RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15003
         (317 letters)



>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 95.1 bits (236), Expect = 4e-25
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 1/109 (0%)

Query: 20  PPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAE 79
           P S  W  R   +F+  C+ED K+  +N +K++L F  +GG++   H   I  +  I+  
Sbjct: 3   PASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62

Query: 80  KSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFNKWKDED 128
            S+    +R+I   ++K +  +  WP LTKE+ K +WL VDFN WKD +
Sbjct: 63  DSKHKRTDRSILCCLRKGESGQ-SWPRLTKERAKLNWLSVDFNNWKDWE 110



 Score = 95.1 bits (236), Expect = 4e-25
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 1/109 (0%)

Query: 181 PPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAE 240
           P S  W  R   +F+  C+ED K+  +N +K++L F  +GG++   H   I  +  I+  
Sbjct: 3   PASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62

Query: 241 KSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFNKWKDED 289
            S+    +R+I   ++K +  +  WP LTKE+ K +WL VDFN WKD +
Sbjct: 63  DSKHKRTDRSILCCLRKGESGQ-SWPRLTKERAKLNWLSVDFNNWKDWE 110


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 25  WAQRNHCIFLTICLEDCKNPTINLDKNQLYFD-GIGGTEKKHHQVTIPFYKEINAEKSQT 83
           W Q    + +T+ +++ +   +N++ ++      +     + + + +     I  E+S  
Sbjct: 7   WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 66

Query: 84  FVRERNIEILIKKTDDDKTYWPHLTKE 110
            V    IEI +KK   +   W  L  +
Sbjct: 67  KVLSTKIEIKLKKP--EAVRWEKLEGQ 91



 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 186 WAQRNHCIFLTICLEDCKNPTINLDKNQLYFD-GIGGTEKKHHQVTIPFYKEINAEKSQT 244
           W Q    + +T+ +++ +   +N++ ++      +     + + + +     I  E+S  
Sbjct: 7   WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 66

Query: 245 FVRERNIEILIKKTDDDKTYWPHLTKE 271
            V    IEI +KK   +   W  L  +
Sbjct: 67  KVLSTKIEIKLKKP--EAVRWEKLEGQ 91


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 8/69 (11%), Positives = 15/69 (21%), Gaps = 2/69 (2%)

Query: 45  TINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKTYW 104
                         G       +  +     I  E+         I+I ++K       W
Sbjct: 58  IFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKR--QSQRW 115

Query: 105 PHLTKEKNK 113
             L     +
Sbjct: 116 GGLEAPAAR 124



 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 8/69 (11%), Positives = 15/69 (21%), Gaps = 2/69 (2%)

Query: 206 TINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKTYW 265
                         G       +  +     I  E+         I+I ++K       W
Sbjct: 58  IFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKR--QSQRW 115

Query: 266 PHLTKEKNK 274
             L     +
Sbjct: 116 GGLEAPAAR 124


>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli
           [TaxId: 562]}
          Length = 168

 Score = 26.7 bits (59), Expect = 2.5
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 9/69 (13%)

Query: 114 YHWLKVDFNKWKDEDDSD---------DENNGGNFEDVAGFLLENSPAWDILYQIVYNFN 164
           YH L V ++  +D+   D         D      +     F++     +       + FN
Sbjct: 73  YHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHFDAGTHGFN 132

Query: 165 SLVVSRSTY 173
           +       Y
Sbjct: 133 AQTPMWEKY 141


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,317,483
Number of extensions: 64767
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 12
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)