BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15004
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%)
Query: 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK 68
+ ++IVYS D ASF A + L + +ILV NK+DLVRCR V+ +G+
Sbjct: 110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR 169
Query: 69 DMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
A +DCKFIETS + HNV EL GI+ Q+RL+ D+
Sbjct: 170 ACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 57/95 (60%)
Query: 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK 68
+ ++IVYS D ASF A + L + +ILV NK+DLVRCR V+ +G+
Sbjct: 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR 138
Query: 69 DMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
A +DCKFIETS + HNV EL GI+ Q+RL+
Sbjct: 139 ACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 57/96 (59%)
Query: 13 GFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT 72
++IVYS D ASF A + L + +ILV NK+DLVR R V+ +G+ A
Sbjct: 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 73 AYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
+DCKFIETS + HNV EL GI+ Q+RL+ D+
Sbjct: 143 VFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR 60
P C+A + ++IVYS D SF A + L + +ILV NK+DLVR R
Sbjct: 71 PGHCMAMGDA---YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 127
Query: 61 VVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
V+ ++G+ A +DCKFIETS ++HNV L G++ QIRL+ D+
Sbjct: 128 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS 173
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR 60
P C+A + ++IVYS D SF A + L + +ILV NK+DLVR R
Sbjct: 71 PGHCMAMGDA---YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 127
Query: 61 VVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
V+ ++G+ A +DCKFIETS ++HNV L G++ QIRL+ D+
Sbjct: 128 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS 173
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR 60
P C+A + ++IVYS D SF A + L + +ILV NK+DLVR R
Sbjct: 66 PGHCMAMGDA---YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 122
Query: 61 VVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
V+ ++G+ A +DCKFIETS ++HNV L G++ QIRL+
Sbjct: 123 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 56/96 (58%)
Query: 13 GFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT 72
++IVYS D ASF A + L + +ILV NK+DLVR R V+ +G+ A
Sbjct: 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 73 AYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
+D KFIETS + HNV EL GI+ Q+RL+ D+
Sbjct: 143 VFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 47/83 (56%)
Query: 13 GFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT 72
++IVYS D SF A + L + +ILV NK DL RCR V+ E+G+ A
Sbjct: 80 AYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV 139
Query: 73 AYDCKFIETSVGINHNVDELLVG 95
+DCKFIETS + HNV EL G
Sbjct: 140 VFDCKFIETSATLQHNVAELFEG 162
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%)
Query: 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK 68
+T F+IV+S D SF + L L VILV NK+DL R R V+ E+G+
Sbjct: 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR 154
Query: 69 DMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+A CK IETS ++HN EL G + QIRL+
Sbjct: 155 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%)
Query: 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK 68
+T F+IV+S D SF + L L VILV NK+DL R R V+ E+G+
Sbjct: 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR 133
Query: 69 DMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+A CK IETS ++HN EL G + QIRL+
Sbjct: 134 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%)
Query: 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK 68
+T F+IV+S D SF + L L VILV NK+DL R R V+ E+G+
Sbjct: 84 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR 143
Query: 69 DMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+A CK IETS ++HN EL G + QIRL+
Sbjct: 144 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+IVYS D ASF ++ Q + + S +ILVANK DL+ R VT + GK+
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 70 MATAYDCKFIETS 82
MAT Y+ +IETS
Sbjct: 149 MATKYNIPYIETS 161
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+IVYS D ASF ++ Q + + S +ILVANK DL+ R VT + GK+
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 70 MATAYDCKFIETS 82
MAT Y+ +IETS
Sbjct: 149 MATKYNIPYIETS 161
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+IVYS D ASF ++ Q + + S +ILVANK DL+ R VT + GK+
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 70 MATAYDCKFIETS 82
MAT Y+ +IETS
Sbjct: 149 MATKYNIPYIETS 161
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+IVYS D ASF ++ Q + + S +ILVANK DL+ R VT + GK+
Sbjct: 84 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 143
Query: 70 MATAYDCKFIETS 82
MAT Y+ +IETS
Sbjct: 144 MATKYNIPYIETS 156
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y HG IIVY D SF +Q +Q + + ++ + +LV NK DLV RVVT ++G
Sbjct: 79 YRGAHGIIIVYDVTDRDSFDNVKQWIQEI-DRYAMENVNKLLVGNKCDLVSKRVVTSDEG 137
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+++A ++ KFIETS +NV++ + +I+
Sbjct: 138 RELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
HG+++VYS L SF V E Q L + V+LV NK DL R V +GK +A
Sbjct: 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA 156
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQI 100
++ F+E+S N +L GI T++
Sbjct: 157 ESWGATFMESSAREN----QLTQGIFTKV 181
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWK-KDSIRSKAVILVANKTDLVRCRVVTDEDGKDM 70
H FI+VYS S + + + + K + S ++LV NK D R V + + +
Sbjct: 76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL 135
Query: 71 ATAYDCKFIETSVGINHNVDELLVGIL 97
A + C F+ETS +NHNV EL +L
Sbjct: 136 ARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ + GF+ V+S ++ SF + + + + +LV NK+DL R V+ E+
Sbjct: 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 142
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 143 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
GFI+VYS ++ SF + + + VILV NK DL R V+ +G+ +A
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA 135
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQI 100
+ C F+ETS VDEL I+ Q+
Sbjct: 136 EEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ + GF+ V+S ++ SF + + + + +LV NK+DL R V+ E+
Sbjct: 87 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 146
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 147 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ + GF+ V+S ++ SF + + + + +LV NK+DL R V+ E+
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 135 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ + GF+ V+S ++ SF + + + + +LV NK+DL R V+ E+
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 135 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D S+ +Q LQ + D S+ V +LV NK+DL +VV +
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEI---DRYASENVNKLLVGNKSDLTTKKVVDNT 135
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 136 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ + GF+ V+S ++ SF + + + + +LV NK+DL R V+ E+
Sbjct: 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 133 KNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D S+ +Q LQ + D S+ V +LV NK+DL +VV +
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEI---DRYASENVNKLLVGNKSDLTTKKVVDNT 135
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 136 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 8 YETPHGFIIVYSTIDLASFHVA----EQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
+ + GF++V+S + SF EQ L+ ++D I +++V NK+DL R V
Sbjct: 76 FRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKI---PLLVVGNKSDLEERRQVP 132
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
E+ + A + +++ETS NVD++ ++ +IR K
Sbjct: 133 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF++V+S D SF + + + + +IL+ NK DL R VT E+G+
Sbjct: 76 TGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ 135
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A ++E S I NVD+ ++ IR
Sbjct: 136 LARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL +VV
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDLTTKKVVDYT 142
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 143 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 8 YETPHGFIIVYSTIDLASFHVA----EQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
+ + GF++V+S + SF EQ L+ ++D I +++V NK+DL R V
Sbjct: 72 FRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKI---PLLVVGNKSDLEERRQVP 128
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
E+ + A + +++ETS NVD++ ++ +IR K
Sbjct: 129 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTD 64
A Y G ++VY ++ E+ L+ L +D S VI LV NK+DL R V
Sbjct: 73 AYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPT 130
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRRRRS 124
++ + A + FIETS + NV+E ILT+I +++++Q + R
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY--------RIVSQKQIADRAAHD 182
Query: 125 KSPG 128
+SPG
Sbjct: 183 ESPG 186
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL +VV
Sbjct: 95 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDLTTKKVVDYT 151
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 152 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL +VV
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDLTTKKVVDYT 142
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 143 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL +VV
Sbjct: 69 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDLTTKKVVDYT 125
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 126 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y H +++Y + ASF + L + + + A++L+ NK D RVV E
Sbjct: 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEI-HEYAQHDVALMLLGNKVDSAHERVVKRE 137
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
DG+ +A Y F+ETS NVD I +++ + P
Sbjct: 138 DGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL +VV
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDLTTKKVVDYT 132
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 133 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
GF +VYS ++F+ + + + + +ILV NK DL RVV E G+++A
Sbjct: 76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA 135
Query: 72 TAY-DCKFIETSVGINHNVDELLVGILTQI 100
+ +C F+E+S NV+E+ ++ QI
Sbjct: 136 RQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL +VV
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDLTTKKVVDYT 132
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 133 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
GF +VYS ++F+ + + + + +ILV NK DL RVV E G+++A
Sbjct: 76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA 135
Query: 72 TAY-DCKFIETSVGINHNVDELLVGILTQI 100
+ +C F+E+S NV+E+ ++ QI
Sbjct: 136 RQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI--LVANKTDLVRCRVVTDE 65
Y HG IIVY D SF+ + LQ + D + V+ LV NK DL RVV +
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDLKDKRVVEYD 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
K+ A A F+ETS + NV++ + + QI+
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI--LVANKTDLVRCRVVTDE 65
Y HG IIVY D SF+ + LQ + D + V+ LV NK DL RVV +
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDLKDKRVVEYD 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
K+ A A F+ETS + NV++ + + QI+
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI--LVANKTDLVRCRVVTDE 65
Y HG IIVY D SF+ + LQ + D + V+ LV NK DL RVV +
Sbjct: 91 YRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDLKDKRVVEYD 147
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
K+ A A F+ETS + NV++ + + QI+
Sbjct: 148 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 183
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
GF +VYS ++F+ + + + + +ILV NK DL RVV E G+++A
Sbjct: 76 QGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLA 135
Query: 72 TAY-DCKFIETSVGINHNVDELLVGILTQI 100
+ +C F+E+S NV+E+ ++ QI
Sbjct: 136 RQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
GF +VYS ++F+ + + + + +ILV NK DL RVV E G+++A
Sbjct: 78 QGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLA 137
Query: 72 TAY-DCKFIETSVGINHNVDELLVGILTQI 100
+ +C F+E+S NV+E+ ++ QI
Sbjct: 138 RQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL +VV
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDLTTKKVVDYT 159
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
K+ A + F+ETS NV++ +I+
Sbjct: 160 TAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIK 195
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWK-KDSIRSKAVILVANKTDLVRCRVVTDEDGKDM 70
H FI+V+S S + + + K S+ V+LV NK D + R V + + +
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAV 139
Query: 71 ATAYDCKFIETSVGINHNVDELLVGILT 98
A + C F+ETS +N+NV EL +LT
Sbjct: 140 AQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI--LVANKTDLVRCRVVTDEDGKDMAT 72
I+VY + SF + +Q + + R K VI LV NKTDL R VT E+G A
Sbjct: 78 IVVYDITNRQSFENTTKWIQDILNE---RGKDVIIALVGNKTDLGDLRKVTYEEGXQKAQ 134
Query: 73 AYDCKFIETSVGINHNVDELL 93
Y+ F ETS HN+ L
Sbjct: 135 EYNTXFHETSAKAGHNIKVLF 155
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR---LKLDNPPE 109
+A +Y +IETS V++ ++ +IR L+ NPP+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPD 175
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G I+VY D +F +Q + + + + ++ ++LV NK+D+ RVVT +
Sbjct: 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDM-ETRVVTAD 145
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
G+ +A FIE+S + NV+E+ + I+ K+D
Sbjct: 146 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G I+VY D +F +Q + + + + ++ ++LV NK+D+ RVVT +
Sbjct: 75 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDM-ETRVVTAD 132
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
G+ +A FIE+S + NV+E+ + I+ K+D+
Sbjct: 133 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 173
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
+G+I+VYS + SF V + L ++LV NK DL RV++ E+GK +A
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 72 TAYDCKFIETSVGINH 87
+++ F+E+S N
Sbjct: 139 ESWNAAFLESSAKENQ 154
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
+G+I+VYS + SF V + L ++LV NK DL RV++ E+GK +A
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 72 TAYDCKFIETSVGINH 87
+++ F+E+S N
Sbjct: 139 ESWNAAFLESSAKENQ 154
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
GF++VY D SF L + ++ +ILV NK DL R V+ E+G+ +A
Sbjct: 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA 159
Query: 72 TAYDCKFIETSVGINH-NVDELLVGILTQIR 101
T C F E S N+ E+ + ++R
Sbjct: 160 TELACAFYECSACTGEGNITEIFYELCREVR 190
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y GF+++Y + SF + + K S + VILV NK DL RVV E
Sbjct: 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVILVGNKCDLEDERVVPAE 148
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELL 93
DG+ +A +F E S N NV ++
Sbjct: 149 DGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
+G+I+VYS + SF V + L ++LV NK DL RV++ E+GK +A
Sbjct: 77 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 136
Query: 72 TAYDCKFIETSVGINH 87
+++ F+E+S N
Sbjct: 137 ESWNAAFLESSAKENQ 152
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
+G+I+VYS + SF V + L ++LV NK DL RV++ E+GK +A
Sbjct: 74 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 133
Query: 72 TAYDCKFIETS 82
+++ F+E+S
Sbjct: 134 ESWNAAFLESS 144
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSK-----AVILVANKTDLVRCRVVTDEDGKD 69
++VY + SFH + + D +R++ ++LV NKTDL R V+ E+G+
Sbjct: 91 VVVYDITNTNSFHQTSKWI------DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER 144
Query: 70 MATAYDCKFIETSVGINHNVDELL 93
A + FIETS +NV +L
Sbjct: 145 KAKELNVMFIETSAKAGYNVKQLF 168
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSK-----AVILVANKTDLVRCRVVTDEDGKD 69
++VY +L SF + + D +R++ ++LV NKTDL R +T E+G+
Sbjct: 79 VVVYDITNLNSFQQTSKWI------DDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQ 132
Query: 70 MATAYDCKFIETSVGINHNVDELL 93
A FIETS +NV +L
Sbjct: 133 RAKELSVMFIETSAKTGYNVKQLF 156
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G I+VY D +F +Q + + + + ++ ++LV NK+D+ RVVT +
Sbjct: 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDM-ETRVVTAD 128
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
G+ +A FIE+S + NV+E+ + I+ K+D+
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCRVVTDE 65
Y HG I+VY D SF+ +Q LQ + D S+ V +LV K DL +VV
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGIKCDLTTKKVVDYT 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 135 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVIL-VANKTDLVRCRVVTD 64
A Y G ++VY SF E+ L+ L +D+ S VIL V NK+DL RV+ D
Sbjct: 76 AYYRGAVGALLVYDITKKNSFENIEKWLKEL--RDNADSNIVILLVGNKSDLKHLRVIND 133
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
D A FIETS NV+ +L +I
Sbjct: 134 NDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y IIV+ + ASF A++ +Q L + + + + L NK+DL+ R VT ED
Sbjct: 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDA 140
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS NV E+ I
Sbjct: 141 QTYAQENGLFFMETSAKTATNVKEIFYEI 169
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQ--ALWKKDSIRSKAVILVANKTDLVR 58
P C H F++VYS SF + L+ AL K++ RS +L+ NK D+ +
Sbjct: 82 PRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 59 CRVVTDEDGKDMATAYDCKFIETSVGIN 86
R VT +G +A + C F E S ++
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLD 169
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G ++VY + SF ++ + + S + +IL NK D+ R V+ E
Sbjct: 74 AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVNDKRQVSKE 132
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
G+ +A Y KF+ETS N NV+ + I+ K+D
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 172
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G I+VY D +F +Q + + + + ++ ++LV NK+D RVVT +
Sbjct: 71 AYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSD-XETRVVTAD 128
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
G+ +A FIE+S + NV+E+ + I+ K+D
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G ++VY + SF ++ + + S + +IL NK D+ R V+ E
Sbjct: 76 AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVNDKRQVSKE 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
G+ +A Y KF+ETS N NV+ + I+ K+D
Sbjct: 135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G I+VY D +F +Q + + + + ++ ++LV NK+D RVVT +
Sbjct: 71 AYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSD-XETRVVTAD 128
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
G+ +A FIE+S + NV+E+ + I+ K+D
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF + + + ++LV NK+DL R V + +D
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQD 133
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y FIETS VD+ ++ +IR
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF + + + ++LV NK+DL R V + +D
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQD 133
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y FIETS VD+ ++ +IR
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
HGF++V++ D SF+ + + + V+LV NK DL R V +
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG 141
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQIR 101
++ + E S + NVDE ++ +R
Sbjct: 142 ASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF + + + ++LV NK+DL R V + +D
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQD 133
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y FIETS VD+ ++ +IR
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSK-----AVILVANKTDLVRCRVVTDEDGKD 69
++VY ++ SF + + D +R++ ++LV NKTDL R V+ E+G+
Sbjct: 93 VVVYDITNVNSFQQTTKWI------DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 146
Query: 70 MATAYDCKFIETSVGINHNVDELL 93
A + FIETS +NV +L
Sbjct: 147 KAKELNVMFIETSAKAGYNVKQLF 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK+DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSK-----AVILVANKTDLVRCRVVTDEDGKD 69
++VY ++ SF + + D +R++ ++LV NKTDL R V+ E+G+
Sbjct: 83 VVVYDITNVNSFQQTTKWI------DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 136
Query: 70 MATAYDCKFIETSVGINHNVDELL 93
A + FIETS +NV +L
Sbjct: 137 KAKELNVMFIETSAKAGYNVKQLF 160
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK+DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y GFI++Y + SF+ + + K S + V+LV NK D+ RVV+ E
Sbjct: 73 AYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVLLVGNKCDMEDERVVSSE 131
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELL 93
G+ +A +F E S N NV +
Sbjct: 132 RGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSK-----AVILVANKTDLVRCRVVTDEDGKD 69
++VY ++ SF + + D +R++ ++LV NKTDL R V+ E+G+
Sbjct: 90 VVVYDITNVNSFQQTTKWI------DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 143
Query: 70 MATAYDCKFIETSVGINHNVDELL 93
A + FIETS +NV +L
Sbjct: 144 KAKELNVMFIETSAKAGYNVKQLF 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSK-----AVILVANKTDLVRCRVVTDEDGKD 69
++VY ++ SF + + D +R++ ++LV NKTDL R V+ E+G+
Sbjct: 83 VVVYDITNVNSFQQTTKWI------DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 136
Query: 70 MATAYDCKFIETSVGINHNVDELL 93
A + FIETS +NV +L
Sbjct: 137 KAKELNVMFIETSAKAGYNVKQLF 160
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF + + + ++LV NK DL R V + +D
Sbjct: 92 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQD 150
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y FIETS VD+ ++ +IR
Sbjct: 151 LARSYGIPFIETSAKTRQGVDDAFYTLVREIR 182
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSK-----AVILVANKTDLVRCRVVTDEDGKD 69
++VY ++ SF + + D +R++ ++LV NKTDL R V+ E+G+
Sbjct: 78 VVVYDITNVNSFQQTTKWI------DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 131
Query: 70 MATAYDCKFIETSVGINHNVDELL 93
A + FIETS +NV +L
Sbjct: 132 KAKELNVMFIETSAKAGYNVKQLF 155
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTD 64
A Y G ++VY ++ E+ L+ L +D S VI LV NK+DL R V
Sbjct: 97 AYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPT 154
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
++ + A FIETS + NV+ ILT+I
Sbjct: 155 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 80 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 138
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 139 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 170
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 81 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 139
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 140 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 171
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTD 64
A Y G ++VY ++ E+ L+ L +D S VI LV NK+DL R V
Sbjct: 97 AYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPT 154
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
++ + A FIETS + NV+ ILT+I
Sbjct: 155 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTD 64
A Y G ++VY ++ E+ L+ L +D S VI LV NK+DL R V
Sbjct: 88 AYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPT 145
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
++ + A FIETS + NV+ ILT+I
Sbjct: 146 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF + + + ++LV NK DL R V + +D
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQD 133
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y FIETS VD+ ++ +IR
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y GFI+ Y + SF+ + + K S + V+LV NK D RVV+ E
Sbjct: 76 AYYRGAXGFILXYDITNEESFNAVQDWSTQI-KTYSWDNAQVLLVGNKCDXEDERVVSSE 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVD---ELLVGILTQIRLKLDNPPEPVLT 113
G+ +A +F E S N NV E LV ++ + + + +P +T
Sbjct: 135 RGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADPAVT 185
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G +IVY +S+ L L ++++ + AV L+ NK+DL R V E
Sbjct: 81 AYYRGAVGALIVYDISKSSSYENCNHWLSEL-RENADDNVAVGLIGNKSDLAHLRAVPTE 139
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ K A F ETS + NVD+ ++ I K+
Sbjct: 140 ESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A + GF++++ SF + L + ++L+ NK DL R V +
Sbjct: 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
+++A Y + ETS NV++ + +L I +++
Sbjct: 163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTD 64
A Y G ++VY ++ E+ L+ L +D S VI LV NK+DL R V
Sbjct: 76 AYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPT 133
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
++ + A FIETS + NV+ ILT+I
Sbjct: 134 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTD 64
A Y G ++VY ++ E+ L+ L +D S VI LV NK+DL R V
Sbjct: 73 AYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIXLVGNKSDLRHLRAVPT 130
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
++ + A FIETS + NV+ ILT+I
Sbjct: 131 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTD 64
A Y G ++VY ++ E+ L+ L +D S VI LV NK+DL R V
Sbjct: 79 AYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIXLVGNKSDLRHLRAVPT 136
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
++ + A FIETS + NV+ ILT+I
Sbjct: 137 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A + GF++++ SF + L + ++L+ NK DL R V +
Sbjct: 89 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 148
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
+++A Y + ETS NV++ + +L I +++
Sbjct: 149 QARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A + GF++++ + SF + L + ++L NK+DL R V +E
Sbjct: 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148
Query: 66 DGKDMATAYDCKFIETSVG----INHNVDELLVGILTQIRLKLD 105
+ +++A Y + ETS I+H ++ LL I+ ++ +D
Sbjct: 149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVD 192
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-GRTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y IIVY +F + ++ L ++ S V + NK DL R V + D
Sbjct: 75 YRGSAAAIIVYDITKEETFSTLKNWVREL-RQHGPPSIVVAIAGNKCDLTDVREVMERDA 133
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
KD A + F+ETS N++EL + I +I
Sbjct: 134 KDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y IIVY +F + ++ L ++ S V + NK DL R V + D
Sbjct: 76 YRGSAAAIIVYDITKEETFSTLKNWVREL-RQHGPPSIVVAIAGNKCDLTDVREVMERDA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
KD A + F+ETS N++EL + I +I
Sbjct: 135 KDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G +IVY +S+ L L ++++ + AV L+ NK+DL R V +
Sbjct: 78 AYYRGAVGALIVYDISKSSSYENCNHWLTEL-RENADDNVAVGLIGNKSDLAHLRAVPTD 136
Query: 66 DGKDMATAYDCKFIETSVGINHNVD----ELLVGILTQI 100
+ K+ A F ETS + NVD EL+V I +
Sbjct: 137 EAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMV 175
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV N+ DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ +IR
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y GFI++Y + SF+ + + K S + VILV NK D+ RVV E
Sbjct: 91 AYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQVILVGNKCDMEEERVVPTE 149
Query: 66 DGKDMATAYDCKFIETSVGINHNV 89
G+ +A F E S N +V
Sbjct: 150 KGQLLAEQLGFDFFEASAKENISV 173
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTD 64
Y ++VY SF A ++ L ++ S + + LV NK D ++ R V
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAR 131
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
E+G+ +A F ETS NV+++ +GI +I LK
Sbjct: 132 EEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A + GF++++ SF + L + ++L+ NK DL R V +
Sbjct: 89 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 148
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
+++A Y + ETS NV++ + +L I +++
Sbjct: 149 QARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + +F A+ ++ L ++ S S + L NK DL R+V E+
Sbjct: 78 YRGAQAAIVVYDITNQETFARAKTWVKELQRQAS-PSIVIALAGNKADLANKRMVEYEEA 136
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS NV++L + I
Sbjct: 137 QAYADDNSLLFMETSAKTAMNVNDLFLAI 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
T GF+ V++ + SF Q + + + ++LV NK DL R V +D
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+A +Y +IETS V++ ++ + R
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREFR 164
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y + +G I+ Y +SF ++ + +K + + +L+ NK+DL R V+ +
Sbjct: 99 YRSANGAILAYDITKRSSFLSVPHWIEDV-RKYAGSNIVQLLIGNKSDLSELREVSLAEA 157
Query: 68 KDMATAYD--CKFIETSVGINHNVDELLVGILTQIRLKLDNP 107
+ +A YD C IETS + NV+E + + T++ ++ P
Sbjct: 158 QSLAEHYDILCA-IETSAKDSSNVEEAFLRVATELIMRHGGP 198
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 135
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 136 QSYADDNSLLFMETSAKTSMNVNEIFMAI 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 75 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 133
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS + NV+E+ + I
Sbjct: 134 QSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y G ++VY +F+ L+ ++ S + ++L+ NK+DL R V E+G
Sbjct: 80 YRGAAGALLVYDITRRDTFNHLTTWLEDA-RQHSNSNMVIMLIGNKSDLESRREVKKEEG 138
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ A + F+ETS NV+E + +I K
Sbjct: 139 EAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y G ++VY +F+ L+ ++ S + ++L+ NK+DL R V E+G
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIMLIGNKSDLESRRDVKREEG 149
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ A + F+ETS NV+E + +I K+
Sbjct: 150 EAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK--DSIRSKAVILVANKTDLVRCRVVTDE 65
Y HG I+VY SF ++ L + + D R ILV NK D +VV E
Sbjct: 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR----ILVGNKNDDPERKVVETE 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQI-RLKLDN 106
D A + ETS N NV+E+ I + R K DN
Sbjct: 135 DAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 8 YETPHGFIIVYSTIDLASFHV----AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
Y H + VY ++ASFH E+C Q L D R ILV NK DL V
Sbjct: 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR----ILVGNKCDLRSAIQVP 146
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ + A + ETS N N ++ + I + KL
Sbjct: 147 TDLAQKFADTHSMPLFETSAK-NPNDNDHVEAIFMTLAHKL 186
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G ++V+ ++ V E+ L+ L+ + V+LV NK+DL + R V E
Sbjct: 93 AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA-TIVVMLVGNKSDLSQAREVPTE 151
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ + A F+ETS + NV+ +L +I K+
Sbjct: 152 EARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y + G I+VY +F + ++ + K S ++LV NK D R +T +
Sbjct: 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCETDREITRQ 152
Query: 66 DGKDMATAY-DCKFIETSVGINHNVDELLVGILTQIRLKL 104
G+ A +F E S N NVDE+ + ++ I K+
Sbjct: 153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y +IVY SF+ ++ ++ L K+ + + + NK DL R V +D
Sbjct: 93 YRGSAAAVIVYDITKQDSFYTLKKWVKEL-KEHGPENIVMAIAGNKCDLSDIREVPLKDA 151
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
K+ A + +ETS N++EL GI QI
Sbjct: 152 KEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A + GF++ + SF L + ++L+ NK DL R V +
Sbjct: 89 AFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNER 148
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+++A Y + ETS NV++ + +L I
Sbjct: 149 QARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A + GF++ + SF L + ++L+ NK DL R V +
Sbjct: 89 AFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNER 148
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+++A Y + ETS NV++ + +L I
Sbjct: 149 QARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65
A Y G ++V+ ++ V E+ L+ L+ + V+LV NK+DL + R V E
Sbjct: 78 AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA-TIVVMLVGNKSDLSQAREVPTE 136
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ + A F+ETS + NV+ +L +I K+
Sbjct: 137 EARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEA 135
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F ETS + NV+E+ I
Sbjct: 136 QSYADDNSLLFXETSAKTSXNVNEIFXAI 164
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 8 YETPHGFIIVYSTIDLASFHV----AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
Y H + VY + ASFH E+C Q L D R ILV NK DL V
Sbjct: 100 YRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPR----ILVGNKCDLRSAIQVP 155
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ + A + ETS N N ++ + I + KL
Sbjct: 156 TDLAQKFADTHSXPLFETSAK-NPNDNDHVEAIFXTLAHKL 195
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y + + I+ Y SF + L+ + + S + V LV NK DL R V+ +
Sbjct: 96 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV-LVGNKIDLAERREVSQQRA 154
Query: 68 KDMATAYDCKFIETSVGINHNVDELLV 94
++ + A D ++ETS + NV++L +
Sbjct: 155 EEFSEAQDMYYLETSAKESDNVEKLFL 181
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + +F A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLASKRAVEFQEA 133
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS NV+E+ + I
Sbjct: 134 QAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + +F A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLASKRAVEFQEA 133
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS NV+E+ + I
Sbjct: 134 QAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + +F A+ ++ L ++ S + + L NK DL R V ++
Sbjct: 73 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLASKRAVEFQEA 131
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGI 96
+ A F+ETS NV+E+ + I
Sbjct: 132 QAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 10 TPHGFIIVYSTIDLASF---HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED 66
T GF+ V++ + SF ++ + ++ + D + ++LV NK DL R V +
Sbjct: 92 TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV---PMVLVGNKCDLP-TRTVDTKQ 147
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
++A +Y FIETS V++ ++ +IR
Sbjct: 148 AHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y +G I+VY D SF + ++ L +K + +V NK DL + R V+ ++
Sbjct: 90 YRDSNGAILVYDITDEDSFQKVKNWVKEL-RKMLGNEICLCIVGNKIDLEKERHVSIQEA 148
Query: 68 KDMATAYDCKFIETSVGINHNVDELLV 94
+ A + K TS N ++EL +
Sbjct: 149 ESYAESVGAKHYHTSAKQNKGIEELFL 175
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y +G I+VY D SF + ++ L +K + +V NK DL + R V+ ++
Sbjct: 76 YRDSNGAILVYDITDEDSFQKVKNWVKEL-RKMLGNEICLCIVGNKIDLEKERHVSIQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLV 94
+ A + K TS N ++EL +
Sbjct: 135 ESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI---LVANKTDLVRCRVV 62
A Y ++V+ST D SF W++ + I LV NK DL+ +
Sbjct: 73 AYYRGAQACVLVFSTTDRESFEAISS-----WREKVVAEVGDIPTALVQNKIDLLDDSCI 127
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELL 93
+E+ + +A +F TSV + NV E+
Sbjct: 128 KNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y +G I+VY D SF + ++ L +K + +V NK DL + R V+ ++
Sbjct: 76 YRDSNGAILVYDITDEDSFQKVKNWVKEL-RKMLGNEICLCIVGNKIDLEKERHVSIQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLV 94
+ A + K TS N ++EL +
Sbjct: 135 ESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDL 56
Y HG I+VY D SF+ +Q LQ + D S+ V +LV NK DL
Sbjct: 68 YRGAHGIIVVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGNKCDL 115
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLV 94
+IL+ NK DL R VT E+ K A F+E S NV++ +
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLV 94
+IL+ NK DL R VT E+ K A F+E S NV++ +
Sbjct: 138 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 185
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
Y G ++VY +++ A W D+ R+ A VIL NK DL R V
Sbjct: 95 YRGAAGALLVYDITSRETYNSL-----AAWLTDA-RTLASPNIVVILCGNKKDLDPEREV 148
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
T + A + F+ETS NV+E + I K+D+
Sbjct: 149 TFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLV 94
+IL NK DL R VT + A + F+ETS NV+E V
Sbjct: 118 IILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 100 IRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRG----------------HRTSASLK 143
+ K+D EP+ ++ + R SK P GF L G HR+ L
Sbjct: 337 FKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLM 396
Query: 144 VKGLLSKVWQRDSKSKSCQNLHVL 167
V+ +++ W + + K + L L
Sbjct: 397 VEYIVA--WNQSEQKKKTEFLDWL 418
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 100 IRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRG----------------HRTSASLK 143
+ K+D EP+ ++ + R SK P GF L G HR+ L
Sbjct: 337 FKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLM 396
Query: 144 VKGLLSKVWQRDSKSKSCQNLHVL 167
V+ +++ W + + K + L L
Sbjct: 397 VEYIVA--WNQSEQKKKTEFLDWL 418
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 100 IRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRG----------------HRTSASLK 143
+ K+D EP+ ++ + R SK P GF L G HR+ L
Sbjct: 356 FKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLM 415
Query: 144 VKGLLSKVWQRDSKSKSCQNLHVL 167
V+ +++ W + + K + L L
Sbjct: 416 VEYIVA--WNQSEQKKKTEFLDWL 437
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 100 IRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRG----------------HRTSASLK 143
+ K+D EP+ ++ + R SK P GF L G HR+ L
Sbjct: 331 FKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLM 390
Query: 144 VKGLLSKVWQRDSKSKSCQNLHVL 167
V+ +++ W + + K + L L
Sbjct: 391 VEYIVA--WNQSEQKKKTEFLDWL 412
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 100 IRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRG----------------HRTSASLK 143
+ K+D EP+ ++ + R SK P GF L G HR+ L
Sbjct: 331 FKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLM 390
Query: 144 VKGLLSKVWQRDSKSKSCQNLHVL 167
V+ +++ W + + K + L L
Sbjct: 391 VEYIVA--WNQSEQKKKTEFLDWL 412
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD 64
Y I+V +ID + ++ L + + +R AV++ ANK D+ C +
Sbjct: 81 YSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAE 137
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 100 IRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRG----------------HRTSASLK 143
+ K+D EP+ ++ + R SK P GF L G HR+ L
Sbjct: 331 FKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLM 390
Query: 144 VKGLLSKVWQRDSKSKSCQNLHVL 167
V+ +++ W + + K + L L
Sbjct: 391 VEYIVA--WNQSEQKKKTEFLDWL 412
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 100 IRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRG----------------HRTSASLK 143
+ K+D EP+ ++ + R SK P GF L G HR+ L
Sbjct: 334 FKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLM 393
Query: 144 VKGLLSKVWQRDSKSKSCQNLHVL 167
V+ +++ W + + K + L L
Sbjct: 394 VEYIVA--WNQSEQKKKTEFLDWL 415
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 14 FIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA 73
FII I LA ++ A+ CL L D + + + VA+ ++ V++E+ ++ A A
Sbjct: 116 FIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA 175
Query: 74 YDCKFIETSVGINH 87
K VGIN+
Sbjct: 176 LGAKV----VGINN 185
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 14 FIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA 73
FII I LA ++ A+ CL L D + + + VA+ ++ V++E+ ++ A A
Sbjct: 116 FIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA 175
Query: 74 YDCKFIETSVGINH 87
K VGIN+
Sbjct: 176 LGAKV----VGINN 185
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLV 94
+IL NK DL R VT + A + F+ETS +V+E V
Sbjct: 119 IILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFV 166
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLV 94
+IL NK DL R VT + A + F+ETS +V+E V
Sbjct: 116 IILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFV 163
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD 64
+ANY G+ ++ + D +Q + W K + +K ++ ANK + VV D
Sbjct: 125 MANYYAELGYKVLIAAADTFRAGATQQLEE--WIKTRLNNKVDLVKANKLNADPASVVFD 182
Query: 65 EDGKDMATAYDCKFIETS 82
K YD I+T+
Sbjct: 183 AIKKAKEQNYDLLLIDTA 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,812,587
Number of Sequences: 62578
Number of extensions: 171468
Number of successful extensions: 611
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 192
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)