Query psy15004
Match_columns 167
No_of_seqs 265 out of 1267
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:00:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04148 RGK RGK subfamily. Th 100.0 7.4E-30 1.6E-34 194.4 15.6 148 5-167 66-221 (221)
2 KOG0078|consensus 99.9 1.9E-26 4.1E-31 170.4 10.9 104 2-106 76-179 (207)
3 KOG0084|consensus 99.9 3.1E-26 6.7E-31 167.4 11.4 106 2-108 73-179 (205)
4 KOG0092|consensus 99.9 4E-26 8.8E-31 166.2 10.6 102 2-104 69-170 (200)
5 KOG0098|consensus 99.9 1.3E-25 2.8E-30 162.9 9.1 107 2-109 70-176 (216)
6 KOG0093|consensus 99.9 6E-25 1.3E-29 154.0 8.5 103 2-105 85-187 (193)
7 KOG0088|consensus 99.9 2E-24 4.4E-29 153.2 10.0 102 3-105 78-179 (218)
8 cd04121 Rab40 Rab40 subfamily. 99.9 5.8E-24 1.3E-28 158.5 13.0 103 2-106 70-172 (189)
9 KOG0091|consensus 99.9 8.6E-24 1.9E-28 150.6 12.4 108 2-109 73-181 (213)
10 KOG0080|consensus 99.9 1.5E-24 3.3E-29 154.0 7.7 104 1-104 74-177 (209)
11 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.5E-23 3.3E-28 160.6 13.2 102 2-105 76-192 (232)
12 KOG0087|consensus 99.9 9.7E-24 2.1E-28 155.8 10.5 103 2-105 78-180 (222)
13 KOG0094|consensus 99.9 1.9E-23 4.1E-28 152.7 11.3 104 2-105 86-189 (221)
14 cd04120 Rab12 Rab12 subfamily. 99.9 8E-23 1.7E-27 153.8 14.6 102 2-104 64-166 (202)
15 KOG0083|consensus 99.9 1.1E-23 2.3E-28 145.8 7.3 108 1-109 61-169 (192)
16 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.1E-22 2.5E-27 149.1 12.4 104 2-105 65-168 (172)
17 KOG0081|consensus 99.9 5E-23 1.1E-27 146.2 8.3 106 1-106 81-186 (219)
18 KOG0395|consensus 99.9 2.3E-22 5.1E-27 150.5 12.4 104 2-105 66-169 (196)
19 cd04133 Rop_like Rop subfamily 99.9 2.8E-22 6.1E-27 147.8 11.7 98 2-101 64-173 (176)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 2.7E-22 5.8E-27 148.7 11.5 98 2-101 68-180 (182)
21 cd01873 RhoBTB RhoBTB subfamil 99.9 2.6E-22 5.6E-27 150.3 11.5 95 3-99 80-194 (195)
22 KOG0086|consensus 99.9 1.9E-22 4.1E-27 142.4 9.5 109 2-111 73-181 (214)
23 PTZ00099 rab6; Provisional 99.9 9.4E-22 2E-26 145.0 13.4 101 3-104 45-145 (176)
24 KOG0079|consensus 99.9 2.8E-22 6E-27 140.8 9.4 101 2-104 72-172 (198)
25 cd04131 Rnd Rnd subfamily. Th 99.9 1.3E-21 2.8E-26 144.4 11.4 97 3-101 65-176 (178)
26 cd04127 Rab27A Rab27a subfamil 99.9 3.4E-21 7.4E-26 141.4 12.8 101 3-103 79-179 (180)
27 cd04103 Centaurin_gamma Centau 99.9 1.5E-21 3.4E-26 141.4 10.7 95 5-99 60-157 (158)
28 cd01875 RhoG RhoG subfamily. 99.9 3.1E-21 6.6E-26 143.8 12.2 99 2-102 66-178 (191)
29 cd04122 Rab14 Rab14 subfamily. 99.9 4.8E-21 1.1E-25 139.0 12.6 99 3-102 67-165 (166)
30 cd04126 Rab20 Rab20 subfamily. 99.9 4.8E-21 1E-25 145.9 12.9 102 2-104 59-193 (220)
31 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 6E-21 1.3E-25 145.5 13.3 100 3-104 65-179 (222)
32 cd04144 Ras2 Ras2 subfamily. 99.9 6.2E-21 1.3E-25 141.8 12.8 104 3-106 63-168 (190)
33 cd04117 Rab15 Rab15 subfamily. 99.9 7.9E-21 1.7E-25 137.6 12.0 96 3-99 65-160 (161)
34 KOG0394|consensus 99.9 6.5E-21 1.4E-25 138.2 10.9 104 2-105 73-182 (210)
35 cd04111 Rab39 Rab39 subfamily. 99.9 2.2E-20 4.9E-25 141.3 14.1 104 3-106 68-171 (211)
36 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.7E-20 3.6E-25 140.7 12.9 104 2-105 65-172 (201)
37 cd04175 Rap1 Rap1 subgroup. T 99.8 1.9E-20 4.1E-25 135.5 11.9 100 2-101 64-163 (164)
38 cd04136 Rap_like Rap-like subf 99.8 2.4E-20 5.2E-25 134.4 12.0 99 2-100 64-162 (163)
39 cd04109 Rab28 Rab28 subfamily. 99.8 2.8E-20 6.1E-25 141.0 12.8 101 3-103 66-168 (215)
40 smart00176 RAN Ran (Ras-relate 99.8 3E-20 6.6E-25 139.6 12.3 98 2-103 59-156 (200)
41 PTZ00369 Ras-like protein; Pro 99.8 4.1E-20 9E-25 137.3 12.7 104 2-105 68-171 (189)
42 PF00071 Ras: Ras family; Int 99.8 3.6E-20 7.7E-25 133.5 11.9 98 3-101 64-161 (162)
43 cd01874 Cdc42 Cdc42 subfamily. 99.8 3.2E-20 7E-25 136.5 11.6 96 3-100 65-174 (175)
44 KOG0097|consensus 99.8 2.5E-20 5.5E-25 130.3 10.3 107 2-109 75-181 (215)
45 cd01865 Rab3 Rab3 subfamily. 99.8 7.7E-20 1.7E-24 132.7 12.7 99 3-102 66-164 (165)
46 cd04176 Rap2 Rap2 subgroup. T 99.8 4.5E-20 9.8E-25 133.2 11.4 99 2-100 64-162 (163)
47 PLN03110 Rab GTPase; Provision 99.8 1.9E-19 4E-24 136.7 15.2 102 2-104 76-177 (216)
48 cd01867 Rab8_Rab10_Rab13_like 99.8 8.9E-20 1.9E-24 132.6 12.8 99 3-102 68-166 (167)
49 cd04125 RabA_like RabA-like su 99.8 1.7E-19 3.7E-24 133.7 13.8 103 3-106 65-167 (188)
50 cd01871 Rac1_like Rac1-like su 99.8 6.7E-20 1.5E-24 134.6 11.3 95 3-99 65-173 (174)
51 cd04134 Rho3 Rho3 subfamily. 99.8 8.7E-20 1.9E-24 135.6 11.9 98 3-102 64-175 (189)
52 cd04146 RERG_RasL11_like RERG/ 99.8 8.3E-20 1.8E-24 132.3 11.1 99 3-101 64-164 (165)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.6E-19 3.5E-24 130.8 12.2 98 3-101 67-164 (166)
54 cd04119 RJL RJL (RabJ-Like) su 99.8 2.2E-19 4.7E-24 129.5 12.6 99 3-101 65-167 (168)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.6E-19 3.5E-24 133.7 12.0 98 3-102 65-167 (182)
56 cd04142 RRP22 RRP22 subfamily. 99.8 1.8E-19 3.8E-24 135.2 12.3 100 4-103 74-176 (198)
57 cd04140 ARHI_like ARHI subfami 99.8 1.7E-19 3.7E-24 130.9 11.6 97 2-98 64-162 (165)
58 smart00173 RAS Ras subfamily o 99.8 2.6E-19 5.5E-24 129.3 12.2 99 3-101 64-162 (164)
59 cd04112 Rab26 Rab26 subfamily. 99.8 3.9E-19 8.5E-24 132.2 13.4 101 3-104 66-166 (191)
60 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.4E-19 5.3E-24 130.7 12.0 98 3-100 68-168 (170)
61 PLN03108 Rab family protein; P 99.8 6.8E-19 1.5E-23 133.0 14.6 102 3-105 71-172 (210)
62 cd04110 Rab35 Rab35 subfamily. 99.8 5.5E-19 1.2E-23 132.4 13.9 100 3-104 71-170 (199)
63 smart00174 RHO Rho (Ras homolo 99.8 2.3E-19 5.1E-24 130.8 11.5 97 3-101 62-172 (174)
64 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 4E-19 8.7E-24 130.0 12.7 100 3-102 65-166 (170)
65 cd04145 M_R_Ras_like M-Ras/R-R 99.8 3.2E-19 6.9E-24 128.6 11.8 98 3-100 66-163 (164)
66 PLN03071 GTP-binding nuclear p 99.8 2.8E-19 6E-24 136.1 11.7 97 3-103 78-174 (219)
67 cd01868 Rab11_like Rab11-like. 99.8 5.9E-19 1.3E-23 127.6 12.3 97 3-100 68-164 (165)
68 KOG0095|consensus 99.8 1.5E-19 3.3E-24 127.3 8.6 102 2-104 71-172 (213)
69 cd01866 Rab2 Rab2 subfamily. 99.8 7.5E-19 1.6E-23 127.9 12.6 99 3-102 69-167 (168)
70 cd04138 H_N_K_Ras_like H-Ras/N 99.8 7.9E-19 1.7E-23 125.9 11.9 98 2-100 64-161 (162)
71 cd04106 Rab23_lke Rab23-like s 99.8 1.1E-18 2.5E-23 125.5 12.0 95 3-99 67-161 (162)
72 cd00877 Ran Ran (Ras-related n 99.8 1.3E-18 2.8E-23 126.7 12.4 96 3-102 65-160 (166)
73 cd01864 Rab19 Rab19 subfamily. 99.8 1.2E-18 2.6E-23 126.2 11.7 96 3-99 68-164 (165)
74 cd04143 Rhes_like Rhes_like su 99.8 2.8E-18 6.1E-23 132.8 14.4 103 3-105 64-175 (247)
75 cd04132 Rho4_like Rho4-like su 99.8 1.7E-18 3.6E-23 128.0 12.3 101 3-105 65-171 (187)
76 cd04116 Rab9 Rab9 subfamily. 99.8 1.5E-18 3.2E-23 126.2 11.7 96 3-99 70-169 (170)
77 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.2E-18 4.8E-23 124.4 12.4 96 3-100 68-163 (164)
78 cd04113 Rab4 Rab4 subfamily. 99.8 1.8E-18 3.9E-23 124.6 11.9 97 3-100 65-161 (161)
79 cd04177 RSR1 RSR1 subgroup. R 99.8 2.6E-18 5.6E-23 125.0 12.0 101 2-102 64-165 (168)
80 PLN03118 Rab family protein; P 99.8 9.2E-18 2E-22 126.7 14.1 101 3-103 78-179 (211)
81 smart00175 RAB Rab subfamily o 99.8 8.8E-18 1.9E-22 120.9 12.7 99 3-102 65-163 (164)
82 cd04130 Wrch_1 Wrch-1 subfamil 99.8 5.4E-18 1.2E-22 123.9 11.6 94 3-98 64-171 (173)
83 cd01892 Miro2 Miro2 subfamily. 99.8 3.2E-18 6.9E-23 125.1 10.2 96 3-101 70-166 (169)
84 cd04124 RabL2 RabL2 subfamily. 99.8 9.8E-18 2.1E-22 121.3 12.0 96 2-102 64-159 (161)
85 cd04118 Rab24 Rab24 subfamily. 99.8 1.6E-17 3.5E-22 123.3 13.2 100 3-104 66-169 (193)
86 KOG4252|consensus 99.8 2E-18 4.3E-23 125.0 7.8 99 4-104 86-184 (246)
87 cd04158 ARD1 ARD1 subfamily. 99.8 7.5E-18 1.6E-22 122.9 10.8 99 3-103 59-163 (169)
88 cd04123 Rab21 Rab21 subfamily. 99.8 1.7E-17 3.6E-22 118.9 12.5 97 3-100 65-161 (162)
89 cd04129 Rho2 Rho2 subfamily. 99.8 1.2E-17 2.6E-22 123.8 11.9 99 4-104 66-176 (187)
90 cd04135 Tc10 TC10 subfamily. 99.8 1.3E-17 2.8E-22 121.5 11.8 96 3-100 64-173 (174)
91 cd04147 Ras_dva Ras-dva subfam 99.8 2.2E-17 4.8E-22 123.5 12.8 100 3-102 63-164 (198)
92 PLN00223 ADP-ribosylation fact 99.8 9E-18 2E-22 124.2 10.5 97 2-103 76-180 (181)
93 cd04139 RalA_RalB RalA/RalB su 99.7 2.9E-17 6.3E-22 118.1 12.4 99 3-101 64-162 (164)
94 smart00177 ARF ARF-like small 99.7 4.1E-18 8.8E-23 125.2 7.9 97 2-100 72-173 (175)
95 cd01860 Rab5_related Rab5-rela 99.7 3.5E-17 7.6E-22 117.9 12.7 97 3-100 66-162 (163)
96 cd01863 Rab18 Rab18 subfamily. 99.7 2.8E-17 6.2E-22 118.2 12.2 96 3-99 65-160 (161)
97 cd04149 Arf6 Arf6 subfamily. 99.7 8.1E-18 1.8E-22 122.9 9.4 94 3-98 69-167 (168)
98 cd01861 Rab6 Rab6 subfamily. 99.7 3E-17 6.6E-22 118.0 12.1 96 3-99 65-160 (161)
99 cd04150 Arf1_5_like Arf1-Arf5- 99.7 4.7E-18 1E-22 123.0 7.1 95 2-98 59-158 (159)
100 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 7E-18 1.5E-22 122.7 7.6 95 2-98 59-163 (164)
101 cd01862 Rab7 Rab7 subfamily. 99.7 8.8E-17 1.9E-21 116.6 13.2 101 3-103 65-169 (172)
102 PTZ00133 ADP-ribosylation fact 99.7 1E-17 2.2E-22 124.0 8.2 100 3-104 77-181 (182)
103 cd04114 Rab30 Rab30 subfamily. 99.7 8.3E-17 1.8E-21 116.7 12.7 97 3-100 72-168 (169)
104 KOG0393|consensus 99.7 2.1E-17 4.6E-22 122.6 9.2 99 4-104 70-182 (198)
105 cd00876 Ras Ras family. The R 99.7 1.5E-16 3.3E-21 113.7 11.4 98 3-100 63-160 (160)
106 cd04137 RheB Rheb (Ras Homolog 99.7 2.6E-16 5.6E-21 115.4 12.7 102 3-104 65-166 (180)
107 cd04154 Arl2 Arl2 subfamily. 99.7 9.8E-17 2.1E-21 117.2 9.9 94 3-98 74-172 (173)
108 cd01870 RhoA_like RhoA-like su 99.7 3.2E-16 6.8E-21 114.3 12.1 96 3-100 65-174 (175)
109 cd04161 Arl2l1_Arl13_like Arl2 99.7 1E-16 2.2E-21 116.8 7.6 97 2-98 58-166 (167)
110 cd01893 Miro1 Miro1 subfamily. 99.7 6.6E-16 1.4E-20 112.1 10.9 97 3-101 63-164 (166)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4.5E-16 9.7E-21 115.1 10.0 101 2-104 67-173 (183)
112 cd00879 Sar1 Sar1 subfamily. 99.7 5.8E-16 1.2E-20 114.6 10.3 96 3-100 79-190 (190)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.6E-16 5.6E-21 115.3 7.6 95 2-98 74-173 (174)
114 cd00154 Rab Rab family. Rab G 99.7 2.1E-15 4.5E-20 107.1 11.5 94 3-97 65-158 (159)
115 cd04157 Arl6 Arl6 subfamily. 99.7 5E-16 1.1E-20 111.6 8.0 94 3-98 61-161 (162)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.6 4.1E-16 8.9E-21 112.1 7.1 94 3-98 60-159 (160)
117 TIGR00157 ribosome small subun 99.6 9.8E-16 2.1E-20 118.5 9.3 92 2-98 28-120 (245)
118 cd00157 Rho Rho (Ras homology) 99.6 2.8E-15 6E-20 108.6 11.0 94 3-98 64-170 (171)
119 cd04151 Arl1 Arl1 subfamily. 99.6 9.4E-16 2E-20 110.3 7.9 94 3-98 59-157 (158)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.1E-15 4.5E-20 108.2 8.7 94 3-98 59-157 (158)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.6 5.5E-15 1.2E-19 106.9 9.6 94 3-98 66-166 (167)
122 cd04102 RabL3 RabL3 (Rab-like3 99.6 4.9E-15 1.1E-19 111.5 9.7 87 2-88 69-177 (202)
123 PTZ00132 GTP-binding nuclear p 99.6 1.8E-14 3.9E-19 109.0 12.4 97 3-103 74-170 (215)
124 smart00178 SAR Sar1p-like memb 99.6 1.4E-14 3E-19 107.2 9.3 95 3-99 77-183 (184)
125 TIGR02528 EutP ethanolamine ut 99.6 8.1E-15 1.8E-19 103.6 7.4 82 7-97 59-141 (142)
126 PRK12299 obgE GTPase CgtA; Rev 99.6 2.5E-14 5.3E-19 115.2 10.8 98 5-102 231-329 (335)
127 KOG3883|consensus 99.6 5.4E-14 1.2E-18 99.7 10.9 101 2-102 76-176 (198)
128 PF00025 Arf: ADP-ribosylation 99.5 6E-14 1.3E-18 103.2 10.6 97 2-100 73-175 (175)
129 cd01898 Obg Obg subfamily. Th 99.5 2.6E-14 5.7E-19 103.5 8.6 91 8-99 76-169 (170)
130 cd01890 LepA LepA subfamily. 99.5 6.3E-14 1.4E-18 102.5 8.9 92 2-100 82-176 (179)
131 cd01897 NOG NOG1 is a nucleola 99.5 9E-14 1.9E-18 100.6 8.9 86 11-100 80-167 (168)
132 cd04155 Arl3 Arl3 subfamily. 99.5 1.6E-13 3.5E-18 99.8 9.7 91 3-98 74-172 (173)
133 cd04159 Arl10_like Arl10-like 99.5 9.5E-14 2.1E-18 98.6 7.9 94 3-98 60-158 (159)
134 KOG0073|consensus 99.5 7.1E-13 1.5E-17 94.9 9.5 103 1-103 74-180 (185)
135 PLN00023 GTP-binding protein; 99.4 4.7E-13 1E-17 106.6 8.9 75 2-76 98-189 (334)
136 KOG4423|consensus 99.4 4.1E-13 8.9E-18 98.0 7.3 107 3-109 91-202 (229)
137 cd01878 HflX HflX subfamily. 99.4 7E-13 1.5E-17 99.3 8.9 87 7-99 117-203 (204)
138 cd01881 Obg_like The Obg-like 99.4 7E-13 1.5E-17 96.3 7.8 95 5-99 69-175 (176)
139 TIGR02729 Obg_CgtA Obg family 99.4 1.1E-12 2.5E-17 105.4 9.7 93 7-100 232-328 (329)
140 PRK15467 ethanolamine utilizat 99.4 1.5E-12 3.3E-17 94.3 8.6 87 7-103 61-149 (158)
141 cd01879 FeoB Ferrous iron tran 99.4 5.1E-12 1.1E-16 90.1 9.8 88 4-99 66-155 (158)
142 KOG0075|consensus 99.4 1.8E-12 4E-17 91.3 6.2 101 2-102 80-183 (186)
143 cd00882 Ras_like_GTPase Ras-li 99.3 1.7E-11 3.6E-16 85.3 10.7 93 5-97 63-156 (157)
144 KOG0070|consensus 99.3 9.6E-12 2.1E-16 90.7 9.3 101 2-102 76-179 (181)
145 cd04171 SelB SelB subfamily. 99.3 1.3E-11 2.8E-16 88.5 9.8 88 4-98 68-163 (164)
146 PRK03003 GTP-binding protein D 99.3 8.9E-12 1.9E-16 104.7 9.0 94 5-103 288-384 (472)
147 TIGR03156 GTP_HflX GTP-binding 99.3 9.5E-12 2.1E-16 100.9 8.4 88 5-99 263-350 (351)
148 TIGR00450 mnmE_trmE_thdF tRNA 99.3 1.3E-11 2.7E-16 102.9 9.3 89 3-104 275-363 (442)
149 PRK12297 obgE GTPase CgtA; Rev 99.3 4E-11 8.7E-16 99.2 11.4 93 7-103 233-329 (424)
150 KOG0076|consensus 99.3 6E-12 1.3E-16 91.0 4.9 100 2-103 84-189 (197)
151 TIGR00436 era GTP-binding prot 99.3 2.7E-11 5.9E-16 94.9 9.0 92 4-102 73-165 (270)
152 COG1100 GTPase SAR1 and relate 99.3 9.1E-11 2E-15 88.5 11.5 102 2-104 69-188 (219)
153 cd01894 EngA1 EngA1 subfamily. 99.2 3.6E-11 7.9E-16 85.4 8.0 86 5-100 71-157 (157)
154 cd01855 YqeH YqeH. YqeH is an 99.2 3.5E-11 7.5E-16 89.4 8.0 92 2-101 26-125 (190)
155 PRK05291 trmE tRNA modificatio 99.2 2.5E-11 5.5E-16 101.4 7.5 84 4-102 288-371 (449)
156 PRK12289 GTPase RsgA; Reviewed 99.2 5.7E-11 1.2E-15 96.3 9.1 92 3-100 82-174 (352)
157 TIGR03594 GTPase_EngA ribosome 99.2 9.9E-11 2.1E-15 97.1 10.7 94 5-103 249-346 (429)
158 PRK03003 GTP-binding protein D 99.2 4.5E-11 9.8E-16 100.5 8.6 91 3-102 110-200 (472)
159 PRK04213 GTP-binding protein; 99.2 1.6E-11 3.4E-16 91.7 5.1 55 43-101 129-192 (201)
160 PRK12296 obgE GTPase CgtA; Rev 99.2 6.3E-11 1.4E-15 99.5 9.2 99 5-104 231-343 (500)
161 PRK11058 GTPase HflX; Provisio 99.2 1.3E-10 2.7E-15 96.5 10.8 93 4-102 270-363 (426)
162 cd01891 TypA_BipA TypA (tyrosi 99.2 7.3E-11 1.6E-15 87.9 8.2 85 3-92 81-173 (194)
163 cd04164 trmE TrmE (MnmE, ThdF, 99.2 9.5E-11 2.1E-15 83.2 8.0 83 4-100 74-156 (157)
164 KOG0096|consensus 99.2 1.7E-11 3.7E-16 89.7 4.0 95 5-103 77-171 (216)
165 cd01854 YjeQ_engC YjeQ/EngC. 99.2 1.2E-10 2.6E-15 92.1 8.7 86 7-98 75-161 (287)
166 PRK15494 era GTPase Era; Provi 99.2 1.6E-10 3.5E-15 93.4 9.2 88 6-102 127-217 (339)
167 TIGR00231 small_GTP small GTP- 99.2 2.2E-10 4.8E-15 80.5 8.8 91 4-96 67-159 (161)
168 TIGR01393 lepA GTP-binding pro 99.2 1.6E-10 3.4E-15 99.6 9.4 93 3-102 86-181 (595)
169 cd01859 MJ1464 MJ1464. This f 99.2 9.7E-11 2.1E-15 84.3 6.9 93 2-101 4-96 (156)
170 cd01895 EngA2 EngA2 subfamily. 99.2 3.1E-10 6.7E-15 81.6 9.2 88 6-98 80-172 (174)
171 PRK00098 GTPase RsgA; Reviewed 99.1 1.9E-10 4E-15 91.5 8.2 88 7-99 77-165 (298)
172 KOG0072|consensus 99.1 1.5E-10 3.3E-15 81.5 6.7 100 3-102 78-180 (182)
173 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 4.1E-10 9E-15 81.1 9.1 91 3-101 66-166 (168)
174 PRK12288 GTPase RsgA; Reviewed 99.1 3.7E-10 8.1E-15 91.4 9.1 88 9-100 119-207 (347)
175 cd00880 Era_like Era (E. coli 99.1 3.3E-10 7.2E-15 79.7 7.8 91 4-99 69-162 (163)
176 cd00881 GTP_translation_factor 99.1 4.1E-10 8.9E-15 82.4 8.3 93 3-100 78-186 (189)
177 cd01888 eIF2_gamma eIF2-gamma 99.1 3.6E-10 7.8E-15 85.0 8.1 90 5-101 101-199 (203)
178 TIGR00437 feoB ferrous iron tr 99.1 3.5E-10 7.7E-15 97.4 8.7 88 5-100 65-154 (591)
179 PRK12298 obgE GTPase CgtA; Rev 99.1 8.1E-10 1.8E-14 90.8 10.0 97 6-103 233-335 (390)
180 KOG1673|consensus 99.1 9.5E-10 2.1E-14 78.4 8.6 98 3-102 85-187 (205)
181 PRK00089 era GTPase Era; Revie 99.1 1.1E-09 2.3E-14 86.6 9.1 93 4-102 78-172 (292)
182 KOG0071|consensus 99.0 4.7E-10 1E-14 78.7 5.7 97 2-100 76-177 (180)
183 TIGR03597 GTPase_YqeH ribosome 99.0 1.2E-09 2.6E-14 89.0 8.4 90 2-99 55-151 (360)
184 cd04163 Era Era subfamily. Er 99.0 1.8E-09 3.9E-14 76.8 7.9 90 5-99 77-167 (168)
185 PRK05433 GTP-binding protein L 99.0 2.5E-09 5.5E-14 92.3 10.1 94 3-103 90-186 (600)
186 TIGR00475 selB selenocysteine- 99.0 2.5E-09 5.4E-14 92.0 9.8 92 3-102 66-167 (581)
187 PRK00093 GTP-binding protein D 99.0 2.7E-09 5.8E-14 88.8 9.1 92 5-102 250-345 (435)
188 KOG1707|consensus 99.0 5.6E-10 1.2E-14 93.7 4.6 96 7-102 76-176 (625)
189 cd01889 SelB_euk SelB subfamil 99.0 3.3E-09 7.1E-14 78.8 8.4 89 9-102 90-187 (192)
190 PRK09518 bifunctional cytidyla 99.0 4.1E-09 8.9E-14 92.7 10.3 92 5-103 527-623 (712)
191 PF02421 FeoB_N: Ferrous iron 99.0 1.2E-09 2.7E-14 78.8 5.7 85 4-96 70-156 (156)
192 PRK00093 GTP-binding protein D 99.0 3.9E-09 8.4E-14 87.8 9.3 84 4-99 74-160 (435)
193 TIGR03594 GTPase_EngA ribosome 98.9 7.9E-09 1.7E-13 85.7 9.1 90 3-102 71-161 (429)
194 PF08477 Miro: Miro-like prote 98.9 2.1E-09 4.6E-14 73.4 4.7 48 6-55 69-119 (119)
195 PRK09518 bifunctional cytidyla 98.9 8E-09 1.7E-13 90.9 9.2 90 3-102 347-437 (712)
196 cd01896 DRG The developmentall 98.8 3.2E-08 7E-13 76.0 10.1 50 44-100 176-225 (233)
197 PRK00454 engB GTP-binding prot 98.8 2.5E-08 5.4E-13 73.8 9.0 92 5-101 98-194 (196)
198 PF00009 GTP_EFTU: Elongation 98.8 3E-08 6.4E-13 73.5 9.1 92 5-101 88-187 (188)
199 TIGR00487 IF-2 translation ini 98.8 3.1E-08 6.8E-13 85.3 10.0 86 3-99 151-248 (587)
200 TIGR00483 EF-1_alpha translati 98.8 1.2E-08 2.5E-13 84.9 6.5 87 5-94 103-200 (426)
201 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.1E-08 6.6E-13 71.4 7.8 92 6-101 4-95 (157)
202 cd01849 YlqF_related_GTPase Yl 98.8 4.1E-08 9E-13 70.6 8.3 84 12-101 1-85 (155)
203 CHL00189 infB translation init 98.8 4.3E-08 9.4E-13 86.0 9.7 87 3-100 311-409 (742)
204 PRK05306 infB translation init 98.8 3.9E-08 8.5E-13 86.9 9.2 89 3-99 353-450 (787)
205 TIGR00491 aIF-2 translation in 98.7 7.4E-08 1.6E-12 83.0 9.9 90 3-100 85-215 (590)
206 KOG0074|consensus 98.7 1.4E-08 3.1E-13 71.4 4.5 95 3-98 78-176 (185)
207 cd01856 YlqF YlqF. Proteins o 98.7 4.8E-08 1E-12 71.4 7.5 90 3-101 12-101 (171)
208 PRK09554 feoB ferrous iron tra 98.7 6.5E-08 1.4E-12 85.7 9.6 84 9-100 84-167 (772)
209 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 2.8E-08 6.2E-13 70.4 6.0 78 4-88 5-84 (141)
210 TIGR03680 eif2g_arch translati 98.7 5.3E-08 1.1E-12 80.6 8.2 94 5-101 98-196 (406)
211 COG2262 HflX GTPases [General 98.7 1.5E-07 3.3E-12 76.6 10.5 90 8-103 269-358 (411)
212 TIGR03598 GTPase_YsxC ribosome 98.7 3.5E-08 7.7E-13 72.4 6.3 81 5-90 92-179 (179)
213 PRK04000 translation initiatio 98.7 6E-08 1.3E-12 80.4 8.3 85 10-101 108-201 (411)
214 PRK10512 selenocysteinyl-tRNA- 98.7 1.4E-07 3E-12 81.8 9.7 89 5-101 69-166 (614)
215 TIGR01394 TypA_BipA GTP-bindin 98.7 7.7E-08 1.7E-12 83.0 8.0 96 3-103 80-193 (594)
216 cd01876 YihA_EngB The YihA (En 98.7 1.6E-07 3.4E-12 67.0 8.1 83 10-99 81-169 (170)
217 smart00010 small_GTPase Small 98.6 1.6E-07 3.5E-12 64.1 7.0 76 4-90 40-115 (124)
218 COG2229 Predicted GTPase [Gene 98.6 7E-07 1.5E-11 65.4 9.5 91 3-99 84-176 (187)
219 KOG1489|consensus 98.6 3.7E-07 8E-12 72.2 8.2 89 7-98 271-364 (366)
220 PRK13796 GTPase YqeH; Provisio 98.5 4.5E-07 9.8E-12 74.1 9.0 84 8-99 66-157 (365)
221 PRK12317 elongation factor 1-a 98.5 1.8E-07 3.8E-12 77.8 6.5 86 6-94 103-198 (425)
222 COG1159 Era GTPase [General fu 98.5 5.4E-07 1.2E-11 70.7 8.2 94 4-103 79-174 (298)
223 TIGR03596 GTPase_YlqF ribosome 98.5 6E-07 1.3E-11 70.7 8.4 90 4-102 15-104 (276)
224 COG1160 Predicted GTPases [Gen 98.5 5.2E-07 1.1E-11 74.4 8.3 90 2-101 75-165 (444)
225 PF10662 PduV-EutP: Ethanolami 98.5 4.2E-07 9.1E-12 64.6 6.4 79 9-96 62-141 (143)
226 PRK14845 translation initiatio 98.5 1.6E-06 3.4E-11 78.8 11.5 90 4-101 543-673 (1049)
227 PRK04004 translation initiatio 98.5 1.4E-06 2.9E-11 75.3 10.7 90 3-100 87-217 (586)
228 TIGR00101 ureG urease accessor 98.5 7.7E-07 1.7E-11 66.9 8.1 82 11-101 113-196 (199)
229 PRK09866 hypothetical protein; 98.5 1.3E-06 2.7E-11 75.4 10.2 91 6-99 254-351 (741)
230 cd04166 CysN_ATPS CysN_ATPS su 98.5 6.8E-07 1.5E-11 67.4 7.4 84 5-92 95-185 (208)
231 PRK01889 GTPase RsgA; Reviewed 98.5 9.3E-07 2E-11 72.0 8.6 83 8-97 110-193 (356)
232 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.2E-06 2.7E-11 69.3 8.2 90 5-103 19-108 (287)
233 cd01883 EF1_alpha Eukaryotic e 98.4 6.2E-07 1.4E-11 68.1 5.9 81 6-90 96-194 (219)
234 cd04165 GTPBP1_like GTPBP1-lik 98.4 3.3E-06 7.1E-11 64.6 9.6 83 10-97 109-219 (224)
235 COG0536 Obg Predicted GTPase [ 98.4 2.1E-06 4.5E-11 68.7 8.3 98 7-104 234-336 (369)
236 cd04105 SR_beta Signal recogni 98.4 7.7E-07 1.7E-11 66.9 5.6 56 3-58 64-123 (203)
237 PRK10218 GTP-binding protein; 98.4 2.1E-06 4.6E-11 74.3 8.8 95 3-102 84-196 (607)
238 TIGR00073 hypB hydrogenase acc 98.3 3.3E-06 7.1E-11 63.6 8.6 56 44-99 148-205 (207)
239 cd04167 Snu114p Snu114p subfam 98.3 1.4E-06 3E-11 65.9 6.3 50 3-57 87-136 (213)
240 COG1160 Predicted GTPases [Gen 98.3 6.2E-06 1.3E-10 68.2 10.4 94 4-102 254-352 (444)
241 KOG0462|consensus 98.3 4.7E-06 1E-10 70.2 9.7 91 7-102 145-236 (650)
242 COG0481 LepA Membrane GTPase L 98.3 4.6E-06 1E-10 69.3 9.3 90 8-104 97-189 (603)
243 COG0486 ThdF Predicted GTPase 98.3 2.5E-06 5.4E-11 70.7 7.7 90 3-103 289-378 (454)
244 COG0532 InfB Translation initi 98.3 1.2E-05 2.5E-10 67.6 10.9 85 5-100 73-169 (509)
245 cd00066 G-alpha G protein alph 98.3 5.5E-06 1.2E-10 66.5 8.7 103 1-103 175-313 (317)
246 PLN00043 elongation factor 1-a 98.2 2.3E-06 4.9E-11 71.8 6.2 83 4-91 102-203 (447)
247 KOG0077|consensus 98.2 1.4E-06 3.1E-11 62.9 4.1 96 2-99 79-191 (193)
248 COG1162 Predicted GTPases [Gen 98.2 1.1E-05 2.3E-10 63.9 9.4 91 7-101 76-167 (301)
249 cd04168 TetM_like Tet(M)-like 98.2 1.6E-05 3.4E-10 61.3 9.3 50 3-57 80-129 (237)
250 smart00275 G_alpha G protein a 98.2 2.2E-05 4.7E-10 63.8 10.2 103 1-103 198-336 (342)
251 cd01884 EF_Tu EF-Tu subfamily. 98.2 2.1E-05 4.6E-10 58.9 9.4 79 6-89 84-171 (195)
252 PTZ00327 eukaryotic translatio 98.2 1.3E-05 2.7E-10 67.5 9.0 90 8-101 138-233 (460)
253 PRK12736 elongation factor Tu; 98.1 1.5E-05 3.3E-10 65.8 8.8 88 8-100 96-200 (394)
254 PRK13768 GTPase; Provisional 98.1 1.1E-05 2.4E-10 62.8 7.5 88 11-101 129-247 (253)
255 KOG0705|consensus 98.0 1.1E-05 2.4E-10 68.1 5.9 102 4-105 89-193 (749)
256 KOG1423|consensus 98.0 2.2E-05 4.7E-10 62.2 6.2 93 6-102 151-272 (379)
257 cd01885 EF2 EF2 (for archaea a 97.9 2.9E-05 6.2E-10 59.4 6.3 50 3-57 89-138 (222)
258 PRK12735 elongation factor Tu; 97.9 5.6E-05 1.2E-09 62.5 8.4 90 6-100 94-202 (396)
259 TIGR00485 EF-Tu translation el 97.9 7.5E-05 1.6E-09 61.6 8.9 74 9-87 97-179 (394)
260 COG0370 FeoB Fe2+ transport sy 97.9 4.2E-05 9.2E-10 66.0 7.4 91 4-102 73-165 (653)
261 PRK13351 elongation factor G; 97.9 8.5E-05 1.8E-09 65.5 9.4 51 3-58 89-139 (687)
262 PRK00741 prfC peptide chain re 97.8 7.5E-05 1.6E-09 63.9 7.7 50 3-57 95-144 (526)
263 KOG1145|consensus 97.8 0.00035 7.7E-09 59.3 11.2 87 3-100 217-315 (683)
264 COG4917 EutP Ethanolamine util 97.8 7.8E-05 1.7E-09 51.7 6.0 80 9-98 63-143 (148)
265 PF06858 NOG1: Nucleolar GTP-b 97.8 8.2E-05 1.8E-09 44.5 5.3 43 11-55 14-58 (58)
266 KOG1707|consensus 97.8 0.00014 3E-09 61.9 8.1 90 9-102 494-584 (625)
267 COG1084 Predicted GTPase [Gene 97.7 0.00015 3.3E-09 57.9 7.6 88 11-102 248-337 (346)
268 TIGR02034 CysN sulfate adenyly 97.7 0.00012 2.5E-09 60.8 7.2 82 7-92 100-188 (406)
269 PRK05124 cysN sulfate adenylyl 97.7 7.9E-05 1.7E-09 63.0 5.9 82 8-93 128-217 (474)
270 KOG3905|consensus 97.7 0.00058 1.2E-08 54.8 10.3 59 44-102 222-291 (473)
271 PRK12740 elongation factor G; 97.7 0.00025 5.4E-09 62.4 8.9 50 3-57 76-125 (668)
272 CHL00071 tufA elongation facto 97.6 0.0003 6.5E-09 58.4 8.1 78 7-89 95-181 (409)
273 TIGR00750 lao LAO/AO transport 97.6 0.00016 3.5E-09 57.6 6.1 85 8-101 145-238 (300)
274 PRK09435 membrane ATPase/prote 97.6 0.00068 1.5E-08 54.8 9.6 88 8-104 167-263 (332)
275 PRK00049 elongation factor Tu; 97.6 0.00062 1.4E-08 56.3 9.3 77 6-87 94-179 (396)
276 KOG1490|consensus 97.6 0.00035 7.6E-09 58.7 7.6 90 12-103 249-343 (620)
277 cd01899 Ygr210 Ygr210 subfamil 97.6 0.00036 7.8E-09 56.1 7.6 54 44-101 214-269 (318)
278 cd04169 RF3 RF3 subfamily. Pe 97.5 0.00045 9.7E-09 54.2 7.8 50 4-58 88-137 (267)
279 cd04104 p47_IIGP_like p47 (47- 97.5 0.0011 2.4E-08 49.4 9.6 87 8-102 78-185 (197)
280 COG1163 DRG Predicted GTPase [ 97.5 0.00092 2E-08 53.5 9.4 51 45-102 240-290 (365)
281 PRK05506 bifunctional sulfate 97.5 0.00034 7.3E-09 61.2 7.5 81 7-91 124-211 (632)
282 COG5257 GCD11 Translation init 97.5 0.00021 4.6E-09 57.1 5.5 88 11-105 110-206 (415)
283 KOG0090|consensus 97.5 0.00048 1E-08 52.0 6.9 96 3-99 98-237 (238)
284 PLN03127 Elongation factor Tu; 97.4 0.00097 2.1E-08 56.1 8.7 88 8-100 145-251 (447)
285 COG0218 Predicted GTPase [Gene 97.4 0.0019 4.1E-08 48.3 8.7 86 11-102 107-198 (200)
286 COG0378 HypB Ni2+-binding GTPa 97.3 0.00051 1.1E-08 51.2 5.0 54 47-100 145-200 (202)
287 PTZ00141 elongation factor 1- 97.2 0.0014 3E-08 55.2 7.6 81 6-91 104-203 (446)
288 cd04170 EF-G_bact Elongation f 97.2 0.0018 4E-08 50.6 7.9 82 3-91 80-163 (268)
289 PF09439 SRPRB: Signal recogni 97.2 0.00057 1.2E-08 50.6 4.5 52 7-58 72-126 (181)
290 cd01886 EF-G Elongation factor 97.2 0.0009 2E-08 52.6 5.8 50 4-58 81-130 (270)
291 KOG1191|consensus 97.2 0.0011 2.3E-08 55.7 6.4 104 5-109 343-458 (531)
292 PLN03126 Elongation factor Tu; 97.2 0.0014 3.1E-08 55.5 7.2 76 8-88 165-249 (478)
293 KOG1532|consensus 97.2 0.0071 1.5E-07 47.7 10.2 90 12-104 149-267 (366)
294 PRK10463 hydrogenase nickel in 97.1 0.0011 2.4E-08 52.6 5.6 56 44-99 230-287 (290)
295 TIGR00484 EF-G translation elo 97.1 0.0019 4.2E-08 57.1 7.2 50 4-58 92-141 (689)
296 cd04178 Nucleostemin_like Nucl 97.0 0.0012 2.6E-08 48.5 4.8 44 12-58 1-44 (172)
297 PRK12739 elongation factor G; 97.0 0.0044 9.5E-08 54.9 9.1 50 4-58 90-139 (691)
298 PF05783 DLIC: Dynein light in 97.0 0.0078 1.7E-07 51.0 9.8 60 44-103 196-266 (472)
299 PF04670 Gtr1_RagA: Gtr1/RagA 97.0 0.0082 1.8E-07 46.2 9.2 95 5-102 71-177 (232)
300 COG2895 CysN GTPases - Sulfate 96.9 0.005 1.1E-07 50.0 7.3 76 10-91 109-193 (431)
301 TIGR00503 prfC peptide chain r 96.8 0.0034 7.4E-08 53.9 6.2 49 4-58 97-146 (527)
302 KOG0082|consensus 96.8 0.0091 2E-07 48.6 8.1 102 2-103 210-346 (354)
303 PF00503 G-alpha: G-protein al 96.7 0.006 1.3E-07 50.3 7.2 100 1-100 250-389 (389)
304 COG3276 SelB Selenocysteine-sp 96.5 0.016 3.4E-07 48.2 8.1 85 9-101 72-162 (447)
305 TIGR02836 spore_IV_A stage IV 96.4 0.021 4.6E-07 47.6 8.3 87 6-98 139-234 (492)
306 cd01882 BMS1 Bms1. Bms1 is an 96.4 0.014 3.1E-07 44.5 7.0 77 7-88 100-183 (225)
307 cd01850 CDC_Septin CDC/Septin. 96.3 0.0091 2E-07 47.1 5.6 73 6-84 108-185 (276)
308 COG1161 Predicted GTPases [Gen 96.3 0.0091 2E-07 48.1 5.4 82 5-94 29-110 (322)
309 KOG1424|consensus 96.3 0.011 2.4E-07 50.0 5.9 72 7-85 171-244 (562)
310 KOG4273|consensus 96.2 0.014 3.1E-07 45.4 5.9 89 11-102 79-223 (418)
311 COG5256 TEF1 Translation elong 96.2 0.011 2.3E-07 48.9 5.2 82 8-92 106-202 (428)
312 KOG2423|consensus 96.1 0.033 7.2E-07 46.1 7.8 90 8-103 211-302 (572)
313 KOG1144|consensus 96.1 0.03 6.5E-07 49.6 7.7 91 6-104 559-690 (1064)
314 PF11111 CENP-M: Centromere pr 96.1 0.098 2.1E-06 38.4 9.2 91 10-102 64-154 (176)
315 smart00053 DYNc Dynamin, GTPas 96.0 0.018 3.9E-07 44.5 5.5 53 2-58 153-206 (240)
316 PF01926 MMR_HSR1: 50S ribosom 96.0 0.025 5.5E-07 38.1 5.7 43 5-53 74-116 (116)
317 KOG0458|consensus 96.0 0.013 2.8E-07 50.2 4.9 81 8-92 276-373 (603)
318 PF03029 ATP_bind_1: Conserved 95.9 0.033 7.1E-07 43.0 6.6 87 10-99 122-235 (238)
319 PF03308 ArgK: ArgK protein; 95.9 0.0052 1.1E-07 47.9 2.1 86 9-103 141-232 (266)
320 COG1217 TypA Predicted membran 95.8 0.038 8.1E-07 46.6 7.0 94 6-105 87-199 (603)
321 COG1703 ArgK Putative periplas 95.8 0.07 1.5E-06 42.6 8.0 87 10-105 164-258 (323)
322 PRK00007 elongation factor G; 95.6 0.047 1E-06 48.5 7.3 75 5-86 93-171 (693)
323 cd03110 Fer4_NifH_child This p 95.5 0.099 2.1E-06 38.0 7.6 68 5-80 109-176 (179)
324 cd01852 AIG1 AIG1 (avrRpt2-ind 95.4 0.19 4.2E-06 37.1 9.1 93 8-102 81-185 (196)
325 KOG0461|consensus 95.4 0.075 1.6E-06 43.3 7.1 86 11-102 94-194 (522)
326 KOG0410|consensus 95.3 0.017 3.7E-07 46.6 3.2 86 7-103 254-343 (410)
327 KOG2484|consensus 95.1 0.045 9.7E-07 45.1 4.9 72 8-85 144-217 (435)
328 PRK09602 translation-associate 95.1 0.035 7.5E-07 46.1 4.4 54 43-100 216-270 (396)
329 PF14331 ImcF-related_N: ImcF- 95.0 0.14 3E-06 40.2 7.5 93 10-103 25-133 (266)
330 COG0050 TufB GTPases - transla 94.8 0.083 1.8E-06 42.2 5.7 67 10-84 98-176 (394)
331 TIGR00490 aEF-2 translation el 94.7 0.038 8.2E-07 49.3 4.0 50 3-57 102-151 (720)
332 COG1149 MinD superfamily P-loo 93.8 0.35 7.5E-06 38.1 7.2 63 6-79 181-243 (284)
333 KOG0466|consensus 93.8 0.066 1.4E-06 43.0 3.2 57 46-102 181-242 (466)
334 PTZ00416 elongation factor 2; 92.5 0.17 3.7E-06 45.9 4.2 48 5-57 110-157 (836)
335 KOG3886|consensus 91.9 0.57 1.2E-05 36.3 5.8 77 6-84 77-162 (295)
336 KOG0099|consensus 91.8 0.54 1.2E-05 37.1 5.7 55 2-56 217-281 (379)
337 PLN00116 translation elongatio 91.6 0.29 6.2E-06 44.6 4.6 47 6-57 117-163 (843)
338 KOG0468|consensus 91.5 0.21 4.6E-06 44.0 3.5 48 4-56 214-261 (971)
339 PRK07560 elongation factor EF- 91.3 0.25 5.4E-06 44.2 3.9 49 4-57 104-152 (731)
340 COG5258 GTPBP1 GTPase [General 91.2 0.56 1.2E-05 39.0 5.4 56 44-100 255-337 (527)
341 PF09419 PGP_phosphatase: Mito 91.1 3.1 6.7E-05 30.4 8.8 85 8-96 36-127 (168)
342 PRK13505 formate--tetrahydrofo 91.1 2.1 4.5E-05 37.1 8.9 90 6-101 318-429 (557)
343 COG3596 Predicted GTPase [Gene 90.6 1.1 2.3E-05 35.6 6.3 98 3-103 110-224 (296)
344 COG3640 CooC CO dehydrogenase 90.6 2.4 5.2E-05 32.9 8.1 45 7-56 152-197 (255)
345 KOG0460|consensus 89.9 1.3 2.7E-05 36.4 6.3 70 10-86 140-223 (449)
346 KOG1954|consensus 88.6 0.43 9.4E-06 39.4 2.9 52 4-59 175-226 (532)
347 COG4963 CpaE Flp pilus assembl 85.0 4.8 0.0001 33.1 7.1 53 3-57 232-284 (366)
348 KOG0447|consensus 84.7 2.5 5.4E-05 36.9 5.5 68 2-72 440-507 (980)
349 PTZ00258 GTP-binding protein; 84.3 2.8 6.1E-05 34.8 5.6 45 43-87 219-266 (390)
350 TIGR03348 VI_IcmF type VI secr 83.5 4.1 8.8E-05 38.7 6.9 49 9-58 200-257 (1169)
351 KOG2485|consensus 83.3 2.9 6.3E-05 33.7 5.0 86 7-100 43-130 (335)
352 COG0012 Predicted GTPase, prob 82.6 2.8 6.1E-05 34.5 4.9 45 43-87 205-250 (372)
353 COG0480 FusA Translation elong 82.1 1.5 3.3E-05 39.1 3.4 46 6-56 95-140 (697)
354 TIGR00064 ftsY signal recognit 81.8 9.8 0.00021 29.9 7.6 71 10-94 190-261 (272)
355 cd02038 FleN-like FleN is a me 81.0 5 0.00011 27.9 5.2 50 4-56 60-109 (139)
356 KOG1143|consensus 81.0 14 0.0003 31.0 8.2 78 11-93 275-380 (591)
357 COG0523 Putative GTPases (G3E 80.8 6.1 0.00013 32.0 6.2 73 11-93 117-193 (323)
358 KOG1486|consensus 79.2 11 0.00023 29.9 6.7 53 44-103 238-290 (364)
359 PF10087 DUF2325: Uncharacteri 78.4 7.3 0.00016 25.4 5.0 17 65-81 65-81 (97)
360 PF03193 DUF258: Protein of un 78.2 5.4 0.00012 29.0 4.7 31 68-98 5-35 (161)
361 cd02117 NifH_like This family 77.9 26 0.00056 26.0 8.7 67 9-80 140-207 (212)
362 KOG0448|consensus 77.2 13 0.00028 33.2 7.4 50 5-59 227-276 (749)
363 cd02036 MinD Bacterial cell di 76.4 18 0.00039 25.6 7.1 69 5-79 79-147 (179)
364 PRK10416 signal recognition pa 76.3 18 0.00038 29.2 7.6 71 10-94 232-303 (318)
365 COG4108 PrfC Peptide chain rel 75.0 6.2 0.00013 33.5 4.7 44 9-58 103-147 (528)
366 PF09547 Spore_IV_A: Stage IV 75.0 25 0.00053 30.0 8.1 56 23-84 162-218 (492)
367 cd03111 CpaE_like This protein 74.5 11 0.00023 24.9 5.1 48 5-53 59-106 (106)
368 PRK14974 cell division protein 73.6 19 0.00042 29.3 7.2 72 10-95 252-324 (336)
369 PF08438 MMR_HSR1_C: GTPase of 72.1 4.3 9.3E-05 27.5 2.6 31 50-84 1-32 (109)
370 KOG3929|consensus 72.0 8.2 0.00018 30.6 4.5 14 44-57 190-203 (363)
371 COG2179 Predicted hydrolase of 71.9 14 0.00029 27.2 5.3 62 23-100 45-106 (175)
372 KOG2486|consensus 71.2 2.8 6E-05 33.4 1.8 56 43-98 247-313 (320)
373 PRK13695 putative NTPase; Prov 70.8 36 0.00078 24.4 9.1 48 43-100 125-172 (174)
374 PRK09601 GTP-binding protein Y 69.8 9.9 0.00021 31.4 4.8 44 44-87 199-243 (364)
375 KOG0780|consensus 67.3 48 0.001 28.0 8.1 81 9-101 128-210 (483)
376 KOG0463|consensus 66.3 24 0.00052 29.6 6.2 28 73-101 330-357 (641)
377 PRK13185 chlL protochlorophyll 64.5 53 0.0012 25.3 7.8 64 8-79 138-202 (270)
378 PF04548 AIG1: AIG1 family; I 63.7 38 0.00082 25.3 6.6 93 8-103 81-188 (212)
379 KOG0085|consensus 60.5 58 0.0012 25.6 7.0 60 43-102 265-350 (359)
380 cd00959 DeoC 2-deoxyribose-5-p 60.4 58 0.0013 24.2 7.1 69 10-83 82-152 (203)
381 PF03709 OKR_DC_1_N: Orn/Lys/A 60.3 41 0.00089 22.6 5.7 42 10-54 36-77 (115)
382 cd00477 FTHFS Formyltetrahydro 59.6 69 0.0015 27.8 8.0 70 26-101 342-413 (524)
383 KOG3887|consensus 59.2 88 0.0019 24.8 8.0 96 5-102 96-203 (347)
384 TIGR01968 minD_bact septum sit 59.2 57 0.0012 24.6 7.1 48 5-56 128-175 (261)
385 TIGR01969 minD_arch cell divis 58.8 75 0.0016 23.8 10.7 47 5-56 125-172 (251)
386 KOG0459|consensus 58.7 8.3 0.00018 32.4 2.4 86 9-94 179-279 (501)
387 TIGR03371 cellulose_yhjQ cellu 58.7 58 0.0013 24.4 7.0 52 4-57 130-181 (246)
388 cd02032 Bchl_like This family 57.7 66 0.0014 24.7 7.3 48 8-56 136-184 (267)
389 COG4502 5'(3')-deoxyribonucleo 57.7 26 0.00057 25.1 4.4 40 13-54 86-125 (180)
390 PRK13507 formate--tetrahydrofo 56.1 93 0.002 27.4 8.2 68 28-101 389-458 (587)
391 cd02071 MM_CoA_mut_B12_BD meth 55.9 61 0.0013 21.9 7.1 69 10-95 50-119 (122)
392 KOG0467|consensus 55.4 16 0.00035 33.1 3.7 44 7-55 92-135 (887)
393 cd01900 YchF YchF subfamily. 54.1 16 0.00034 28.9 3.2 44 44-88 195-240 (274)
394 cd01840 SGNH_hydrolase_yrhL_li 54.0 72 0.0016 22.1 6.6 66 9-80 49-115 (150)
395 cd02067 B12-binding B12 bindin 53.7 34 0.00073 22.8 4.5 57 14-81 52-108 (119)
396 KOG1249|consensus 53.2 6.6 0.00014 33.9 1.0 23 78-100 188-210 (572)
397 TIGR00640 acid_CoA_mut_C methy 53.1 74 0.0016 22.1 8.3 76 12-102 53-129 (132)
398 TIGR01281 DPOR_bchL light-inde 53.0 1E+02 0.0022 23.6 7.7 48 8-56 136-184 (268)
399 COG1358 RPL8A Ribosomal protei 52.4 19 0.00041 24.7 3.0 41 10-57 43-83 (116)
400 COG1512 Beta-propeller domains 52.4 1.1E+02 0.0025 24.1 7.7 88 10-102 63-159 (271)
401 cd04170 EF-G_bact Elongation f 51.1 17 0.00036 28.2 2.9 25 76-100 241-265 (268)
402 PF00205 TPP_enzyme_M: Thiamin 50.1 36 0.00078 23.3 4.3 38 44-85 12-49 (137)
403 TIGR00991 3a0901s02IAP34 GTP-b 49.9 44 0.00095 27.0 5.1 47 10-57 118-166 (313)
404 CHL00175 minD septum-site dete 49.3 93 0.002 24.1 6.9 47 6-56 144-190 (281)
405 cd02037 MRP-like MRP (Multiple 48.7 94 0.002 22.0 8.2 66 9-79 90-162 (169)
406 TIGR00126 deoC deoxyribose-pho 48.6 1.2E+02 0.0025 23.0 7.6 71 9-84 82-154 (211)
407 PF01268 FTHFS: Formate--tetra 48.3 32 0.0007 30.0 4.4 69 26-100 357-427 (557)
408 KOG2961|consensus 48.0 86 0.0019 22.9 5.8 54 44-98 79-132 (190)
409 PF01939 DUF91: Protein of unk 47.5 72 0.0016 24.6 5.8 67 7-82 141-211 (228)
410 PF13651 EcoRI_methylase: Aden 47.4 27 0.00059 28.4 3.6 44 3-56 128-171 (336)
411 TIGR03677 rpl7ae 50S ribosomal 47.2 24 0.00052 24.1 2.9 14 43-56 68-81 (117)
412 PF07764 Omega_Repress: Omega 46.7 18 0.00039 21.8 1.9 21 82-102 44-64 (71)
413 PRK13506 formate--tetrahydrofo 45.9 1.7E+02 0.0037 25.8 8.3 68 28-101 381-451 (578)
414 COG3523 IcmF Type VI protein s 45.9 35 0.00075 32.7 4.5 50 8-58 212-270 (1188)
415 COG1908 FrhD Coenzyme F420-red 45.2 61 0.0013 22.5 4.5 58 46-103 56-124 (132)
416 TIGR00959 ffh signal recogniti 44.6 1.1E+02 0.0024 25.9 6.9 63 10-83 212-274 (428)
417 PLN02759 Formate--tetrahydrofo 44.5 1.5E+02 0.0033 26.4 7.8 57 43-101 449-508 (637)
418 PF01656 CbiA: CobQ/CobB/MinD/ 44.0 49 0.0011 23.6 4.3 52 5-58 111-162 (195)
419 PF00735 Septin: Septin; Inte 43.2 40 0.00087 26.7 4.0 65 10-80 113-180 (281)
420 PRK13556 azoreductase; Provisi 42.9 1.4E+02 0.003 22.2 8.3 46 7-52 86-143 (208)
421 PRK10818 cell division inhibit 41.2 1.4E+02 0.0031 22.8 6.8 49 7-56 132-185 (270)
422 PRK13555 azoreductase; Provisi 40.8 52 0.0011 24.8 4.1 33 7-39 86-118 (208)
423 COG1010 CobJ Precorrin-3B meth 40.7 71 0.0015 24.9 4.8 48 6-54 150-197 (249)
424 PF14784 ECIST_Cterm: C-termin 40.5 57 0.0012 22.7 3.9 42 8-49 81-123 (126)
425 TIGR03436 acidobact_VWFA VWFA- 40.1 1.8E+02 0.0039 22.7 9.9 88 11-105 165-259 (296)
426 PRK06242 flavodoxin; Provision 39.6 1.2E+02 0.0027 20.8 6.1 67 8-80 41-107 (150)
427 cd01853 Toc34_like Toc34-like 39.6 59 0.0013 25.2 4.4 15 44-58 114-128 (249)
428 CHL00072 chlL photochlorophyll 39.5 1.9E+02 0.0041 22.8 11.6 94 8-103 136-246 (290)
429 PRK11148 cyclic 3',5'-adenosin 38.7 42 0.0009 26.1 3.4 41 10-54 55-96 (275)
430 cd01832 SGNH_hydrolase_like_1 38.2 76 0.0016 22.5 4.6 38 10-51 67-112 (185)
431 cd03115 SRP The signal recogni 37.9 1.4E+02 0.0031 21.0 6.6 41 10-57 112-152 (173)
432 PF07034 ORC3_N: Origin recogn 37.3 58 0.0013 26.3 4.1 84 23-106 55-149 (330)
433 PRK11537 putative GTP-binding 37.1 1.6E+02 0.0035 23.7 6.7 71 11-93 123-196 (318)
434 PF02492 cobW: CobW/HypB/UreG, 37.1 33 0.00072 24.8 2.5 42 11-59 114-156 (178)
435 PTZ00386 formyl tetrahydrofola 37.1 2.9E+02 0.0064 24.6 8.4 57 43-101 436-496 (625)
436 COG4359 Uncharacterized conser 36.7 41 0.00089 25.3 2.9 34 65-98 79-112 (220)
437 TIGR03566 FMN_reduc_MsuE FMN r 36.4 40 0.00088 24.2 2.9 44 8-52 66-109 (174)
438 PF09827 CRISPR_Cas2: CRISPR a 36.3 49 0.0011 20.4 2.9 23 13-35 3-25 (78)
439 cd01828 sialate_O-acetylestera 35.6 1.5E+02 0.0033 20.6 7.4 40 10-51 48-94 (169)
440 PRK13660 hypothetical protein; 35.6 1.4E+02 0.003 22.1 5.6 14 9-22 128-141 (182)
441 TIGR01007 eps_fam capsular exo 35.4 1.3E+02 0.0029 21.9 5.6 47 7-57 147-193 (204)
442 PRK06756 flavodoxin; Provision 34.7 75 0.0016 22.0 4.0 44 8-52 47-91 (148)
443 cd04169 RF3 RF3 subfamily. Pe 34.7 37 0.0008 26.5 2.5 25 76-100 240-264 (267)
444 PRK04175 rpl7ae 50S ribosomal 34.6 51 0.0011 22.6 3.0 14 43-56 72-85 (122)
445 COG2759 MIS1 Formyltetrahydrof 34.2 2.4E+02 0.0052 24.4 7.2 71 26-102 355-427 (554)
446 PRK03892 ribonuclease P protei 34.1 2.1E+02 0.0046 21.8 6.4 67 16-92 10-76 (216)
447 PHA02518 ParA-like protein; Pr 33.4 1.9E+02 0.004 20.9 6.7 49 4-55 92-144 (211)
448 cd01886 EF-G Elongation factor 33.1 41 0.0009 26.3 2.6 25 76-100 243-267 (270)
449 COG3033 TnaA Tryptophanase [Am 33.0 1.5E+02 0.0033 24.9 5.8 48 41-88 182-232 (471)
450 PF00462 Glutaredoxin: Glutare 33.0 28 0.00061 20.0 1.3 43 5-53 16-58 (60)
451 KOG1487|consensus 32.0 60 0.0013 26.0 3.2 51 44-102 231-282 (358)
452 cd01844 SGNH_hydrolase_like_6 32.0 1.7E+02 0.0037 20.6 5.6 42 10-53 57-102 (177)
453 PF10036 RLL: Putative carniti 31.9 72 0.0016 24.8 3.7 67 18-102 17-89 (249)
454 cd08166 MPP_Cdc1_like_1 unchar 31.8 1.2E+02 0.0026 22.8 4.7 65 10-74 42-111 (195)
455 PRK09739 hypothetical protein; 31.6 84 0.0018 23.1 3.9 31 8-38 77-107 (199)
456 PRK00771 signal recognition pa 31.6 1.7E+02 0.0036 24.9 6.1 61 10-82 205-266 (437)
457 PRK10867 signal recognition pa 31.5 2E+02 0.0043 24.4 6.5 63 10-83 213-275 (433)
458 cd07388 MPP_Tt1561 Thermus the 31.0 85 0.0018 24.0 3.9 44 9-56 30-74 (224)
459 PRK00170 azoreductase; Reviewe 30.4 74 0.0016 23.2 3.5 30 8-37 84-113 (201)
460 cd02040 NifH NifH gene encodes 30.3 2.4E+02 0.0053 21.4 8.4 44 10-54 141-185 (270)
461 PF03641 Lysine_decarbox: Poss 29.8 1.4E+02 0.0031 20.5 4.6 44 7-53 50-93 (133)
462 cd07379 MPP_239FB Homo sapiens 29.1 1E+02 0.0023 20.8 3.9 44 9-56 18-62 (135)
463 PF05014 Nuc_deoxyrib_tr: Nucl 29.1 1.3E+02 0.0028 19.8 4.3 43 6-56 57-101 (113)
464 COG0420 SbcD DNA repair exonuc 29.1 96 0.0021 25.4 4.2 44 10-55 40-87 (390)
465 TIGR00503 prfC peptide chain r 29.0 56 0.0012 28.4 2.9 29 76-104 250-278 (527)
466 KOG4271|consensus 28.8 68 0.0015 29.9 3.4 35 75-109 3-37 (1100)
467 PRK09602 translation-associate 28.0 67 0.0015 26.8 3.1 14 8-21 100-113 (396)
468 TIGR02181 GRX_bact Glutaredoxi 27.8 65 0.0014 19.5 2.4 11 43-53 48-58 (79)
469 PF13401 AAA_22: AAA domain; P 27.4 1.1E+02 0.0023 20.2 3.7 42 9-53 84-125 (131)
470 PF08468 MTS_N: Methyltransfer 26.8 2E+02 0.0043 20.6 5.0 42 9-55 68-109 (155)
471 PRK10569 NAD(P)H-dependent FMN 26.5 65 0.0014 23.8 2.6 43 7-53 63-108 (191)
472 TIGR01425 SRP54_euk signal rec 26.4 3.2E+02 0.007 23.2 6.9 40 10-57 212-252 (429)
473 cd02042 ParA ParA and ParB of 26.3 1.8E+02 0.0038 18.4 5.0 28 6-34 57-84 (104)
474 PRK13233 nifH nitrogenase redu 26.1 3E+02 0.0066 21.1 11.4 44 10-54 143-187 (275)
475 TIGR03567 FMN_reduc_SsuE FMN r 26.1 64 0.0014 23.2 2.4 45 8-53 63-107 (171)
476 TIGR01753 flav_short flavodoxi 26.0 1.2E+02 0.0025 20.4 3.7 44 8-52 43-88 (140)
477 TIGR02370 pyl_corrinoid methyl 25.4 2.8E+02 0.0061 20.5 6.4 57 15-83 138-194 (197)
478 cd04501 SGNH_hydrolase_like_4 25.0 2.5E+02 0.0054 19.8 5.4 13 10-22 59-71 (183)
479 cd07393 MPP_DR1119 Deinococcus 24.7 1.3E+02 0.0027 22.8 3.9 42 9-53 40-81 (232)
480 PTZ00222 60S ribosomal protein 24.5 75 0.0016 25.0 2.6 77 10-105 148-224 (263)
481 cd02990 UAS_FAF1 UAS family, F 24.1 2.6E+02 0.0057 19.6 5.5 49 6-55 51-107 (136)
482 PF00319 SRF-TF: SRF-type tran 23.4 83 0.0018 18.1 2.1 15 8-22 30-44 (51)
483 PRK05569 flavodoxin; Provision 23.2 1.4E+02 0.0031 20.3 3.7 69 8-80 46-116 (141)
484 TIGR02016 BchX chlorophyllide 23.1 3.8E+02 0.0083 21.2 10.0 90 8-106 145-254 (296)
485 PRK13601 putative L7Ae-like ri 22.7 76 0.0016 20.2 2.0 14 43-56 49-62 (82)
486 PHA03050 glutaredoxin; Provisi 22.5 81 0.0018 21.0 2.2 6 77-82 71-76 (108)
487 PRK08327 acetolactate synthase 22.5 2.5E+02 0.0054 24.4 5.8 34 44-81 221-254 (569)
488 PRK13235 nifH nitrogenase redu 22.5 3.6E+02 0.0079 20.7 7.9 45 10-55 142-187 (274)
489 TIGR01681 HAD-SF-IIIC HAD-supe 22.2 2.2E+02 0.0047 19.2 4.4 25 26-54 31-55 (128)
490 PF07905 PucR: Purine cataboli 22.1 2.6E+02 0.0056 18.8 9.5 84 6-100 38-122 (123)
491 cd02070 corrinoid_protein_B12- 22.0 2.1E+02 0.0046 21.1 4.6 57 15-83 136-192 (201)
492 PF00072 Response_reg: Respons 21.9 2.1E+02 0.0046 17.8 8.0 39 11-55 44-82 (112)
493 PF14606 Lipase_GDSL_3: GDSL-l 21.9 1.1E+02 0.0024 22.6 3.0 39 11-51 60-100 (178)
494 TIGR03884 sel_bind_Methan sele 21.8 1.6E+02 0.0034 18.5 3.2 27 77-103 15-41 (74)
495 PF00701 DHDPS: Dihydrodipicol 21.6 1.8E+02 0.0039 22.7 4.4 69 10-83 96-164 (289)
496 KOG0465|consensus 21.5 1.3E+02 0.0027 27.0 3.6 29 77-105 284-312 (721)
497 PRK00507 deoxyribose-phosphate 21.5 3.7E+02 0.008 20.4 6.5 72 9-85 86-159 (221)
498 TIGR00315 cdhB CO dehydrogenas 21.3 2.1E+02 0.0045 20.7 4.3 35 44-82 28-62 (162)
499 TIGR01501 MthylAspMutase methy 20.8 3.1E+02 0.0066 19.2 5.1 40 62-102 39-78 (134)
500 PF11288 DUF3089: Protein of u 20.6 1.2E+02 0.0027 22.9 3.1 44 7-51 52-101 (207)
No 1
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.4e-30 Score=194.44 Aligned_cols=148 Identities=42% Similarity=0.651 Sum_probs=122.5
Q ss_pred hcccC-CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 5 IANYE-TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 5 ~~y~~-~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
..|+. ++|++|+|||++++.||+.+..|+.++.......++|+|+||||+|+.+.+.++.+++..++..++++|++|||
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA 145 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSA 145 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecC
Confidence 34566 99999999999999999999999999877544468999999999999887888888888899988999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCCCCcchhhhhhhcccccCCCCCCCcCCCcccccchHHHHHHHHHhhc-------CC
Q psy15004 84 GINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRRRRSKSPGGFRKLRGHRTSASLKVKGLLSKVWQR-------DS 156 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~k~~~~~~~~~~~-------~~ 156 (167)
++|.||+++|+++++++......++.. .+......++++.+...+++.||.+++.+ ++
T Consensus 146 ~~~~gv~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~r~~~~~~~a~~~l~~~~~~~~~~~~~~~ 210 (221)
T cd04148 146 GLQHNVDELLEGIVRQIRLRRDSKEKN---------------ERRSRRAYRGRRESLTSKAKRFLGKLVAKNNKGMAFKS 210 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccccc---------------CccccccccCccchHHHHHHHHHHHHhccccchhhhhh
Confidence 999999999999999998654433220 00012334567788999999999998874 45
Q ss_pred CCCCCccCcCC
Q psy15004 157 KSKSCQNLHVL 167 (167)
Q Consensus 157 k~~~c~~~~~~ 167 (167)
||+||||||||
T Consensus 211 ~~~~~~~~~~~ 221 (221)
T cd04148 211 KSKSCHDLSVL 221 (221)
T ss_pred ccCCccccccC
Confidence 89999999998
No 2
>KOG0078|consensus
Probab=99.94 E-value=1.9e-26 Score=170.40 Aligned_cols=104 Identities=30% Similarity=0.445 Sum_probs=97.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++.+||++|+++++|||+|+..||+++..|+..|.++ ...++|++|||||+|+.+.++|+.+.++.+|.++|+.|+||
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~Et 154 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFET 154 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEc
Confidence 57899999999999999999999999999999999876 44589999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
||++|.||++.|..|++.+..+.+.
T Consensus 155 SAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred cccCCCCHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999975543
No 3
>KOG0084|consensus
Probab=99.94 E-value=3.1e-26 Score=167.41 Aligned_cols=106 Identities=25% Similarity=0.382 Sum_probs=98.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCe-EEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCK-FIE 80 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e 80 (167)
..+.+|||+|+|+|+|||+|++.||+++..|+.++.++ ...++|.+|||||+|+.+.+.|+.++++.++..++++ |+|
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~E 151 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLE 151 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceee
Confidence 46889999999999999999999999999999999876 4567899999999999999999999999999999998 999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhCCCC
Q psy15004 81 TSVGINHNVDELLVGILTQIRLKLDNPP 108 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~~~~~~ 108 (167)
|||+++.||++.|..|...+..+.....
T Consensus 152 TSAK~~~NVe~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 152 TSAKDSTNVEDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred cccCCccCHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999998765443
No 4
>KOG0092|consensus
Probab=99.94 E-value=4e-26 Score=166.24 Aligned_cols=102 Identities=27% Similarity=0.349 Sum_probs=95.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++++|||+|+++|+|||+|+.+||..++.|+.++.+... +++.+.|||||+||.+.++|..+++..+|...|+.|+|+
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ET 147 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFET 147 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEE
Confidence 4789999999999999999999999999999999987744 789999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||++|.||+++|..|.+.+....
T Consensus 148 SAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 148 SAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred ecccccCHHHHHHHHHHhccCcc
Confidence 99999999999999999987643
No 5
>KOG0098|consensus
Probab=99.93 E-value=1.3e-25 Score=162.85 Aligned_cols=107 Identities=25% Similarity=0.349 Sum_probs=100.0
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+.+.+||++|.++|+|||+++++||..+..|+.+++++ ..+++.++|+|||+||...++|+.++++.||+++|+.|+|+
T Consensus 70 sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmET 148 (216)
T KOG0098|consen 70 SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMET 148 (216)
T ss_pred HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehh
Confidence 57899999999999999999999999999999999876 45789999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhCCCCC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLDNPPE 109 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~~~~~ 109 (167)
||++++||+|+|..+..+|..+.+....
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKIQDGVF 176 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999988765544
No 6
>KOG0093|consensus
Probab=99.92 E-value=6e-25 Score=154.00 Aligned_cols=103 Identities=29% Similarity=0.422 Sum_probs=96.3
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+.|-.||++|+++|+|||+|+.+||..+..|.-+|... ...++|+||||||||+.+++.++.+.++.++.++|+.|||+
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEt 163 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFET 163 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhh
Confidence 56788999999999999999999999999999999665 45689999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||+.+.||+++|+.++..|..++.
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987654
No 7
>KOG0088|consensus
Probab=99.91 E-value=2e-24 Score=153.16 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=95.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+-+.||++++++|+|||+||++||+.+++|+.+++.. ....+-+++||||+||.+++.|+..++..++...|+.|+++|
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTS 156 (218)
T KOG0088|consen 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETS 156 (218)
T ss_pred cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecc
Confidence 4578999999999999999999999999999999776 345789999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|+.+.||.++|+.|...+.+...
T Consensus 157 Ak~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 157 AKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred cccccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988653
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=5.8e-24 Score=158.48 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=93.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..||++||++|+|||++++.||+++..|++++... .+++|+||||||+||.+.+.++.++++.+++.++++|+||
T Consensus 70 ~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~ 147 (189)
T cd04121 70 TIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEV 147 (189)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEe
Confidence 35778999999999999999999999999999999664 3589999999999998888889999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
||++|.||+++|++|++.+......
T Consensus 148 SAk~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 148 SPLCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988765543
No 9
>KOG0091|consensus
Probab=99.91 E-value=8.6e-24 Score=150.58 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=98.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
.-|.+||+++-++++|||+|++.||+.++.|+.+...... +..+...|||.|+||...++|+.++++.+++.+|+.|+|
T Consensus 73 sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVE 152 (213)
T KOG0091|consen 73 SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVE 152 (213)
T ss_pred HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEE
Confidence 4688999999999999999999999999999999866554 445667899999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhCCCCC
Q psy15004 81 TSVGINHNVDELLVGILTQIRLKLDNPPE 109 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~~~~~~~ 109 (167)
|||++|.||++.|..|.+.|.........
T Consensus 153 TSak~g~NVeEAF~mlaqeIf~~i~qGei 181 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIFQAIQQGEI 181 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHHHHHhcCce
Confidence 99999999999999999999988776544
No 10
>KOG0080|consensus
Probab=99.91 E-value=1.5e-24 Score=154.03 Aligned_cols=104 Identities=26% Similarity=0.292 Sum_probs=98.1
Q ss_pred ChhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
|.+|++||++|.++|+|||+|.+++|..+..|+.++..+...+++..++||||+|...++.|+.+++..||+++++-|+|
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE 153 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIE 153 (209)
T ss_pred hccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEE
Confidence 45899999999999999999999999999999999988877788999999999998888999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 81 TSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|||++.+||...|++|+..|.+..
T Consensus 154 ~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 154 CSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred cchhhhccHHHHHHHHHHHHhcCc
Confidence 999999999999999999998743
No 11
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=1.5e-23 Score=160.65 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=89.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCC------------ccccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVR------------CRVVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~ 68 (167)
.+++.||++||++|+|||+++++||+.+ ..|+.++.... +++|+||||||+||.+ .+.|+.++++
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~ 153 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC 153 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH
Confidence 3567899999999999999999999985 88999997642 4789999999999964 2678889999
Q ss_pred HHHHhcCC-eEEEEecCCCC-CHHHHHHHHHHHHHhhhC
Q psy15004 69 DMATAYDC-KFIETSVGINH-NVDELLVGILTQIRLKLD 105 (167)
Q Consensus 69 ~~~~~~~~-~~~e~SA~~~~-~v~~lf~~l~~~i~~~~~ 105 (167)
.+|+++++ .|+||||++|. ||+++|..++..+.....
T Consensus 154 ~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 154 ALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred HHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 99999999 69999999998 899999999998876543
No 12
>KOG0087|consensus
Probab=99.90 E-value=9.7e-24 Score=155.83 Aligned_cols=103 Identities=30% Similarity=0.373 Sum_probs=96.7
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
..+.+||++|.|+++|||+|.+.+|+++..|+.+++.+ ..++++++|||||+||...+.|+.+++..+|...+..|+|+
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~Et 156 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLET 156 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEe
Confidence 56889999999999999999999999999999999876 44689999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||+++.||+++|..++.+|.....
T Consensus 157 SAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 157 SALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred cccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 13
>KOG0094|consensus
Probab=99.90 E-value=1.9e-23 Score=152.66 Aligned_cols=104 Identities=26% Similarity=0.303 Sum_probs=96.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+.++||+++.++|+|||++|..||++..+|++.+.......++-++|||||.||.+.++++.+++...|++++..|+|+
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~et 165 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIET 165 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEe
Confidence 46799999999999999999999999999999999887666678999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||+.|.||.++|..|...+.....
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCccc
Confidence 999999999999998888876543
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=8e-23 Score=153.83 Aligned_cols=102 Identities=25% Similarity=0.392 Sum_probs=91.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc-CCeEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY-DCKFIE 80 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e 80 (167)
.++..||++||++|+|||+++++||+++..|+..+... ...++|+|+||||+||.+.+++..+++..+++.+ ++.|+|
T Consensus 64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~e 142 (202)
T cd04120 64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCE 142 (202)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEE
Confidence 46789999999999999999999999999999988654 3467999999999999888888889999999875 789999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 81 TSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|||++|.||+++|.++++.+....
T Consensus 143 tSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 143 ASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999887654
No 15
>KOG0083|consensus
Probab=99.90 E-value=1.1e-23 Score=145.78 Aligned_cols=108 Identities=29% Similarity=0.481 Sum_probs=96.9
Q ss_pred ChhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+..|..||++||+.+++||++++.||+++..|+.+|.++ ....+.++++|||+|+..++.|..+++..+++.+++||+|
T Consensus 61 rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfme 139 (192)
T KOG0083|consen 61 RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFME 139 (192)
T ss_pred hhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCcee
Confidence 356889999999999999999999999999999999776 4467889999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhh-hCCCCC
Q psy15004 81 TSVGINHNVDELLVGILTQIRLK-LDNPPE 109 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~-~~~~~~ 109 (167)
+||++|.||+-.|..|.+++... +..++.
T Consensus 140 tsaktg~nvd~af~~ia~~l~k~~~~~~~~ 169 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEELKKLKMGAPPE 169 (192)
T ss_pred ccccccccHhHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999988764 334433
No 16
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=1.1e-22 Score=149.08 Aligned_cols=104 Identities=32% Similarity=0.502 Sum_probs=93.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..||+++|++|+|||++++.||+.+..|+..+.+.....++|+++||||+|+.+.+.++.+++..+++.++++|+||
T Consensus 65 ~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~ 144 (172)
T cd04141 65 AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFET 144 (172)
T ss_pred HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEE
Confidence 46778999999999999999999999999998888765444679999999999998778888889999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||++|.||+++|++|++.+.....
T Consensus 145 Sa~~~~~v~~~f~~l~~~~~~~~~ 168 (172)
T cd04141 145 SAALRHYIDDAFHGLVREIRRKES 168 (172)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999998886443
No 17
>KOG0081|consensus
Probab=99.89 E-value=5e-23 Score=146.18 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=98.9
Q ss_pred ChhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
|.+|-.||++|-+||++||+|++.||-++.+|+.+++.+....+.-||++|||+||.+.++|+.+++.+++.++|+||||
T Consensus 81 RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 81 RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 35788999999999999999999999999999999988766778889999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 81 TSVGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
+||.+|.||++..+.|+..+.++++.
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 18
>KOG0395|consensus
Probab=99.89 E-value=2.3e-22 Score=150.49 Aligned_cols=104 Identities=37% Similarity=0.553 Sum_probs=96.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.|...|++++|+|++||+++|+.||+.+..++++|.+......+|+|+||||+||...++|+.+++..++..++++|+|+
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~ 145 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIET 145 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEe
Confidence 46788999999999999999999999999999999666566779999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||+.+.+|+++|..|++++.....
T Consensus 146 Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 146 SAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred eccCCcCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999987443
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.88 E-value=2.8e-22 Score=147.82 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=86.8
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCcc----------ccChhHHHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRCR----------VVTDEDGKDM 70 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~----------~v~~~~~~~~ 70 (167)
.++..||++||++|+|||++++.||+++ ..|+.++.... .++|+||||||+||.+.+ .++.+++..+
T Consensus 64 ~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 64 RLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEEL 141 (176)
T ss_pred ccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHH
Confidence 4677899999999999999999999998 68999986553 479999999999996543 4788999999
Q ss_pred HHhcCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 71 ATAYDC-KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 71 ~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+..+++ .|+||||++|.||+++|..+++.+.
T Consensus 142 a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 142 RKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred HHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 999998 6999999999999999999998764
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=2.7e-22 Score=148.66 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=86.8
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCC------------ccccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVR------------CRVVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~ 68 (167)
.+.+.||++||++|+|||++++.||+++ ..|+.++... .+++|+||||||+||.+ .+.++.+++.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 145 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA 145 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH
Confidence 3567899999999999999999999997 7899999765 35789999999999964 3468889999
Q ss_pred HHHHhcCC-eEEEEecCCCCC-HHHHHHHHHHHHH
Q psy15004 69 DMATAYDC-KFIETSVGINHN-VDELLVGILTQIR 101 (167)
Q Consensus 69 ~~~~~~~~-~~~e~SA~~~~~-v~~lf~~l~~~i~ 101 (167)
++|+.+++ +|+||||++|.| |+++|..+++.+.
T Consensus 146 ~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 146 NMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 99999996 999999999998 9999999998654
No 21
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=2.6e-22 Score=150.30 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=84.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCC-------------------cccc
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVR-------------------CRVV 62 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~-------------------~~~v 62 (167)
+...||++||++|+|||++++.||+++. .|+.++... .+++|+||||||+||.+ .+.|
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 3567999999999999999999999996 599988654 25789999999999964 3678
Q ss_pred ChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 63 ~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
+.+++..+|+.++++|+||||++|.||+++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999999999864
No 22
>KOG0086|consensus
Probab=99.88 E-value=1.9e-22 Score=142.44 Aligned_cols=109 Identities=25% Similarity=0.248 Sum_probs=101.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
..+++||++|.++++|||+|+++||+.+..|+..++.. ..+++.+||+|||.||...++|+..++..|+++..+.|.|+
T Consensus 73 SVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flET 151 (214)
T KOG0086|consen 73 SVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 151 (214)
T ss_pred HHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeee
Confidence 56899999999999999999999999999999999765 56789999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhCCCCCCc
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLDNPPEPV 111 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~~~~~~~ 111 (167)
||++|+||+|.|-..++.|..+.+..+..+
T Consensus 152 Sa~TGeNVEEaFl~c~~tIl~kIE~GElDP 181 (214)
T KOG0086|consen 152 SALTGENVEEAFLKCARTILNKIESGELDP 181 (214)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhcCCCH
Confidence 999999999999999999999888776644
No 23
>PTZ00099 rab6; Provisional
Probab=99.88 E-value=9.4e-22 Score=145.04 Aligned_cols=101 Identities=28% Similarity=0.321 Sum_probs=90.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||++||++|+|||++++.||+.+..|+..+.... ..++|+||||||+||.+.+.+..+++..++..+++.|+|||
T Consensus 45 ~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~S 123 (176)
T PTZ00099 45 LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETS 123 (176)
T ss_pred ccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEE
Confidence 56789999999999999999999999999999987653 35789999999999987777888889899998999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|++.+....
T Consensus 124 Ak~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 124 AKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999987643
No 24
>KOG0079|consensus
Probab=99.88 E-value=2.8e-22 Score=140.81 Aligned_cols=101 Identities=29% Similarity=0.370 Sum_probs=95.0
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+++..||++.+++++|||+|+.+||.++..|++++... .+.+|-||||||.|+.+.+.|..++++.||...|+.+||+
T Consensus 72 titstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FET 149 (198)
T KOG0079|consen 72 TITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFET 149 (198)
T ss_pred HHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheeh
Confidence 57889999999999999999999999999999999664 4689999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||+.+.|++..|.-|.+++....
T Consensus 150 SaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 150 SAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hhhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999988755
No 25
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=1.3e-21 Score=144.44 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=85.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCC------------ccccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVR------------CRVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~~ 69 (167)
+.+.||++||++|+|||+++++||+++ ..|+.++.+.. +++|+||||||+||.+ .+.++.+++.+
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH
Confidence 567899999999999999999999996 78999997653 5789999999999964 24588899999
Q ss_pred HHHhcCC-eEEEEecCCCCC-HHHHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHN-VDELLVGILTQIR 101 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~-v~~lf~~l~~~i~ 101 (167)
+++.+++ .|+||||++|.| |+++|..+++...
T Consensus 143 ~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 143 IAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 9999997 899999999995 9999999998544
No 26
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.87 E-value=3.4e-21 Score=141.36 Aligned_cols=101 Identities=23% Similarity=0.380 Sum_probs=91.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||+++++||+++..|+.++.......+.|+++||||+|+.+.+.++.+++..+++.++++|+++|
T Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 158 (180)
T cd04127 79 LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETS 158 (180)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEe
Confidence 56789999999999999999999999999999987654445789999999999987778888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.|++++|+.|++.+.++
T Consensus 159 ak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 159 AATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999887653
No 27
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.87 E-value=1.5e-21 Score=141.37 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=84.2
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC--CccccChhHHHHHHHhc-CCeEEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV--RCRVVTDEDGKDMATAY-DCKFIET 81 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~e~ 81 (167)
..|++++|++|+|||++++.||+++..|+.++.......++|+++||||.||. ..+.++.+++..+++.. ++.|+||
T Consensus 60 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 139 (158)
T cd04103 60 AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYET 139 (158)
T ss_pred hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEE
Confidence 46889999999999999999999999999999776545679999999999985 35778888898999876 5899999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQ 99 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~ 99 (167)
||++|.||+++|..+++.
T Consensus 140 SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 140 CATYGLNVERVFQEAAQK 157 (158)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 28
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.86 E-value=3.1e-21 Score=143.77 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=85.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCcc------------ccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCR------------VVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~ 68 (167)
.++..||++||++|+|||+++++||+.+. .|+.++... ..++|++|||||+||.+.. .++.+++.
T Consensus 66 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 35778999999999999999999999996 598888653 3579999999999996542 36778899
Q ss_pred HHHHhcC-CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 69 DMATAYD-CKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 69 ~~~~~~~-~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.+++.++ +.|+||||++|.||+++|..|++.+..
T Consensus 144 ~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 144 ALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 9999998 599999999999999999999998864
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.86 E-value=4.8e-21 Score=139.04 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=89.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||+++|++|+|||++++.||+.+..|+.++... ..++.|+++||||+|+...+.++.+++..+++..+++|++||
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 145 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECS 145 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEE
Confidence 4677999999999999999999999999999988654 335789999999999988788888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.||+++|.+++..+..
T Consensus 146 a~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 146 AKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 30
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.86 E-value=4.8e-21 Score=145.89 Aligned_cols=102 Identities=24% Similarity=0.203 Sum_probs=89.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC-------------------cccc
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR-------------------CRVV 62 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~-------------------~~~v 62 (167)
.+...||+++|++|+|||++++.||+++..|+..+.+. ...++|+||||||+||.+ .+.+
T Consensus 59 ~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v 137 (220)
T cd04126 59 GLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV 137 (220)
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccC
Confidence 35678999999999999999999999999888877654 345789999999999975 5788
Q ss_pred ChhHHHHHHHhcC--------------CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 63 TDEDGKDMATAYD--------------CKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 63 ~~~~~~~~~~~~~--------------~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
+.+++..++++++ ++|+||||++|.||+++|..+++.+....
T Consensus 138 ~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 138 TLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred CHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 8899999999876 68999999999999999999999887644
No 31
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.86 E-value=6e-21 Score=145.52 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=84.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
+.+.||+++|++|+|||+++++||+.+ ..|..++... .+++|+||||||+||.+. ..++.+++..
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~ 142 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTV 142 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHH
Confidence 567899999999999999999999998 5687776443 467999999999999642 1367789999
Q ss_pred HHHhcCC-eEEEEecCCCCC-HHHHHHHHHHHHHhhh
Q psy15004 70 MATAYDC-KFIETSVGINHN-VDELLVGILTQIRLKL 104 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~-v~~lf~~l~~~i~~~~ 104 (167)
+++..++ .|+||||+++.| |+++|..++.....+.
T Consensus 143 ~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 143 LAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred HHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence 9999996 899999999985 9999999999776543
No 32
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=6.2e-21 Score=141.84 Aligned_cols=104 Identities=26% Similarity=0.394 Sum_probs=91.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+...||+++|++|+|||++++.||+.+..|+..+..... ..++|+|+||||+|+.+.+.++..++..++..++++|++
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 142 (190)
T cd04144 63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIE 142 (190)
T ss_pred HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEE
Confidence 567899999999999999999999999999988865432 257899999999999877788888888899989999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 81 TSVGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
+||++|.||+++|+++++.+......
T Consensus 143 ~SAk~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 143 ASAKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999988765543
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.86 E-value=7.9e-21 Score=137.62 Aligned_cols=96 Identities=25% Similarity=0.342 Sum_probs=87.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++++|||++++.||+.+..|+.++... ...++|+++||||+|+...+.+..+++..+++.++++|+|||
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 143 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETS 143 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 5678999999999999999999999999999998755 335799999999999988788888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQ 99 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~ 99 (167)
|++|.||+++|.+|++.
T Consensus 144 a~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 144 ACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999864
No 34
>KOG0394|consensus
Probab=99.85 E-value=6.5e-21 Score=138.19 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=91.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC---CCCceEEEEEecCCCCC--ccccChhHHHHHHHhc-C
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS---IRSKAVILVANKTDLVR--CRVVTDEDGKDMATAY-D 75 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~---~~~~piilvgNK~Dl~~--~~~v~~~~~~~~~~~~-~ 75 (167)
.+--.|||+||++++|||++++.||+.+..|.+++..... +..-|.||+|||+|+.+ .++|+...++.|+++. +
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 3456799999999999999999999999999999876543 24579999999999975 3899999999999976 5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
++|||||||.+.||++.|+.+++.++....
T Consensus 153 ipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 153 IPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred ceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999987553
No 35
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2.2e-20 Score=141.30 Aligned_cols=104 Identities=25% Similarity=0.338 Sum_probs=93.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.||+++..|+.++........+|+++||||+|+.+.+.+..+++..+++.+++.|+|+|
T Consensus 68 ~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 147 (211)
T cd04111 68 ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETS 147 (211)
T ss_pred HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEe
Confidence 46789999999999999999999999999999987654445688999999999988778888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
|++|.||+++|+.|++.+......
T Consensus 148 ak~g~~v~e~f~~l~~~~~~~~~~ 171 (211)
T cd04111 148 ARTGDNVEEAFELLTQEIYERIKR 171 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998876543
No 36
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=1.7e-20 Score=140.67 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=90.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC---CCCCceEEEEEecCCCCCccccChhHHHHHHHhcC-Ce
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD---SIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD-CK 77 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~---~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~ 77 (167)
.++..||+++|++|+|||+++++||+.+..|+.++.... ...++|+||||||+|+.+.+.+..+++..+++..+ +.
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIG 144 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCce
Confidence 357789999999999999999999999999998886431 23578999999999998667778889999999998 59
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|++|||++|.||+++|++|++.+....+
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhch
Confidence 9999999999999999999999887543
No 37
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.85 E-value=1.9e-20 Score=135.49 Aligned_cols=100 Identities=29% Similarity=0.477 Sum_probs=88.7
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+...||+++|++|+|||++++.+|+.+..|+..+.......++|+++||||+|+.+.+.+..+++..+++.++++|+++
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04175 64 AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLET 143 (164)
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEe
Confidence 35678999999999999999999999999999998765455689999999999998777777777888888889999999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~ 101 (167)
||++|.|++++|.++++.+.
T Consensus 144 Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 144 SAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred eCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999998764
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.84 E-value=2.4e-20 Score=134.35 Aligned_cols=99 Identities=30% Similarity=0.479 Sum_probs=87.8
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+...||+++|++|+|||++++.+|+.+..|+.++.......++|+++||||+|+.+.+.+..+++..+++.++++|+++
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd04136 64 AMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYET 143 (163)
T ss_pred hHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEe
Confidence 35678999999999999999999999999999998765445679999999999998767777778888888888999999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQI 100 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i 100 (167)
||++|.|++++|+++++.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 144 SAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998764
No 39
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.84 E-value=2.8e-20 Score=140.99 Aligned_cols=101 Identities=23% Similarity=0.197 Sum_probs=90.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+...||++||++|+|||+++++||+++..|+..+..... ..++|+++||||+|+.+.+.++.+++..++..+++++++
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~ 145 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCL 145 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 567899999999999999999999999999999876532 245789999999999877888888899999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhh
Q psy15004 81 TSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+||++|.||+++|++|++.+...
T Consensus 146 iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 146 VSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999988753
No 40
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=3e-20 Score=139.60 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=84.8
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..||+++|++|+|||++++.||+.+..|+.++.+. ..++|+||||||+|+.. +.+..+ ...++...++.|+||
T Consensus 59 ~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 134 (200)
T smart00176 59 GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDI 134 (200)
T ss_pred hhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEE
Confidence 35678999999999999999999999999999999765 25799999999999964 445443 346788889999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
||++|.||+++|.+|++.+...
T Consensus 135 SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 135 SAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred eCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 41
>PTZ00369 Ras-like protein; Provisional
Probab=99.84 E-value=4.1e-20 Score=137.29 Aligned_cols=104 Identities=29% Similarity=0.391 Sum_probs=91.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+...||+++|++|+|||++++++|+.+..|+..+.+.....++|+++||||+|+.+.+.+..+++..++..++++|+++
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~ 147 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLET 147 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEe
Confidence 35677999999999999999999999999999998765445688999999999997777777778888888889999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||++|.||+++|.+|++.+....+
T Consensus 148 Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 148 SAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998876543
No 42
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.84 E-value=3.6e-20 Score=133.54 Aligned_cols=98 Identities=26% Similarity=0.368 Sum_probs=90.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...+|+++|++|+|||+++++||+.+..|+..+..... .++|++|||||+|+.+.+.++.+++..+++.++++|+|+|
T Consensus 64 ~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~S 142 (162)
T PF00071_consen 64 LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVS 142 (162)
T ss_dssp HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEB
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEE
Confidence 345789999999999999999999999999999987643 4689999999999988888999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|+++.||.++|..+++.+.
T Consensus 143 a~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TTTTTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999875
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.84 E-value=3.2e-20 Score=136.48 Aligned_cols=96 Identities=17% Similarity=0.293 Sum_probs=83.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
++..||+++|++|+|||+++++||+.+. .|+.++... .+++|+|+||||+|+.+. +.++.+++..
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~ 142 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEK 142 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHH
Confidence 5667999999999999999999999996 598888654 257899999999998653 5677888999
Q ss_pred HHHhcC-CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 70 MATAYD-CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 70 ~~~~~~-~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+++..+ +.|+||||++|.||+++|+.++..+
T Consensus 143 ~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 143 LARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 999887 6999999999999999999998753
No 44
>KOG0097|consensus
Probab=99.84 E-value=2.5e-20 Score=130.28 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=98.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
..+++||++|.+.++|||++.+.++..+..|+...+.. ..++..++++|||.||...+.|+.+++.+|+.+.|+.|+|+
T Consensus 75 avtrsyyrgaagalmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~ 153 (215)
T KOG0097|consen 75 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEA 153 (215)
T ss_pred HHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEe
Confidence 57899999999999999999999999999999988665 34678899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhCCCCC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLDNPPE 109 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~~~~~ 109 (167)
||++|.||++.|-+..++|....+....
T Consensus 154 saktg~nvedafle~akkiyqniqdgsl 181 (215)
T KOG0097|consen 154 SAKTGQNVEDAFLETAKKIYQNIQDGSL 181 (215)
T ss_pred cccccCcHHHHHHHHHHHHHHhhhcCcc
Confidence 9999999999999999999988776543
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.83 E-value=7.7e-20 Score=132.68 Aligned_cols=99 Identities=29% Similarity=0.402 Sum_probs=88.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++++|+.+..|+..+... ....+|+++||||+|+.+.+.+..+++..++..++++++++|
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEAS 144 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEE
Confidence 4678899999999999999999999999999998654 334789999999999987777777888888888899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++++..+..
T Consensus 145 a~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 145 AKENINVKQVFERLVDIICD 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 46
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.83 E-value=4.5e-20 Score=133.25 Aligned_cols=99 Identities=28% Similarity=0.459 Sum_probs=87.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..||+++|++|+|||++++.||+++..|+..+.......++|+++||||+|+.....+...++..++..+++++++|
T Consensus 64 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd04176 64 SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMET 143 (163)
T ss_pred chHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEe
Confidence 46778999999999999999999999999999998765444689999999999997666667777888888888999999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQI 100 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i 100 (167)
||++|.|++++|.++++++
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 144 SAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998754
No 47
>PLN03110 Rab GTPase; Provisional
Probab=99.83 E-value=1.9e-19 Score=136.69 Aligned_cols=102 Identities=26% Similarity=0.372 Sum_probs=91.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..||+++|++|+|||++++.+|+.+..|+..+... ...++|+++||||+|+...+.+..+++..++..++++|+++
T Consensus 76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~ 154 (216)
T PLN03110 76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLET 154 (216)
T ss_pred HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEE
Confidence 35678999999999999999999999999999998765 23579999999999998778888888999999899999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||++|.|++++|+.|+..+....
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987743
No 48
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.83 E-value=8.9e-20 Score=132.59 Aligned_cols=99 Identities=31% Similarity=0.466 Sum_probs=88.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|+++||++|+|||++++.+|+.+..|+..+... ...++|+++||||+|+.+.+.+..+++..++..++++|+++|
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETS 146 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 4567899999999999999999999999999998764 335789999999999987777777888889999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.||+++|+++++.+..
T Consensus 147 a~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 147 AKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 49
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.7e-19 Score=133.67 Aligned_cols=103 Identities=26% Similarity=0.398 Sum_probs=91.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..+|+++|++|+|||++++++|+.+..|+.++.... ...+|+++||||+|+.+.+.+..+++..++...+++|+++|
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 143 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETS 143 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEe
Confidence 46788999999999999999999999999999987652 34689999999999987777888888889888899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
|++|.|++++|++|++.+......
T Consensus 144 a~~~~~i~~~f~~l~~~~~~~~~~ 167 (188)
T cd04125 144 AKQSINVEEAFILLVKLIIKRLEE 167 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999875543
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.83 E-value=6.7e-20 Score=134.65 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=82.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
++..||+++|++|+|||+++++||+.+. .|+..+... .+++|+|+||||+||.+. +.++.+++..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 5678999999999999999999999995 688887654 357999999999999643 3477889999
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
++++++. +|+||||++|.||+++|+.+++.
T Consensus 143 ~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 143 MAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 9999985 99999999999999999999864
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=8.7e-20 Score=135.60 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=84.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCcc------------ccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCR------------VVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~ 69 (167)
++..||+++|++|+|||+++++||+.+. .|+..+... ..++|+++||||+||.+.+ .+..+++..
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 5678999999999999999999999986 599988654 3579999999999997543 345677888
Q ss_pred HHHhcC-CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 70 MATAYD-CKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 70 ~~~~~~-~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++...+ +.|+||||++|.||+++|.+|++.+..
T Consensus 142 ~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 142 VAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 888777 689999999999999999999998864
No 52
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.83 E-value=8.3e-20 Score=132.33 Aligned_cols=99 Identities=30% Similarity=0.474 Sum_probs=87.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+..|++++|++|+|||++++.||+.+..|+..+..... ..++|+++||||+|+...+.+..+++..++...+++|+++
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 143 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEV 143 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEe
Confidence 456789999999999999999999999999988876532 3579999999999997777778888889999999999999
Q ss_pred ecCCC-CCHHHHHHHHHHHHH
Q psy15004 82 SVGIN-HNVDELLVGILTQIR 101 (167)
Q Consensus 82 SA~~~-~~v~~lf~~l~~~i~ 101 (167)
||++| .||+++|..|++.+.
T Consensus 144 Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 144 SAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCCCchhHHHHHHHHHHHHh
Confidence 99999 599999999998764
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.82 E-value=1.6e-19 Score=130.84 Aligned_cols=98 Identities=31% Similarity=0.433 Sum_probs=88.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||+++|++|+|||+++++||+.+..|+..+.... ..+.|+++||||+|+.....+..+++..++..++++|+++|
T Consensus 67 ~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T cd01869 67 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETS 145 (166)
T ss_pred HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 45688999999999999999999999999999986652 35789999999999987777777888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|++|.||+++|..|++.+.
T Consensus 146 a~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 146 AKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.82 E-value=2.2e-19 Score=129.51 Aligned_cols=99 Identities=25% Similarity=0.429 Sum_probs=87.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCC----CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSI----RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~----~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~ 78 (167)
+...||+++|++|+|||++++.+|+.+..|+.++...... .+.|+++|+||+|+.+.+.+..+++..++...+++|
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKY 144 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeE
Confidence 5678899999999999999999999999999998765332 568999999999997666777888888888889999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+++||++|.|++++|+.|++.+.
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998775
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.82 E-value=1.6e-19 Score=133.69 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=82.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC-----ccccChhHHHHHHHhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR-----CRVVTDEDGKDMATAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~-----~~~v~~~~~~~~~~~~~~~ 77 (167)
+...||++||++|+|||++++.||+++..|+.++.... ...+| |+||||+||.. ......+++..+++.++++
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~ 142 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP 142 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE
Confidence 56789999999999999999999999999999987652 33566 68999999952 1112246777888888999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|||++|.||+++|.++++.+..
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998875
No 56
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.82 E-value=1.8e-19 Score=135.20 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=85.0
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC--CCCCceEEEEEecCCCCCccccChhHHHHHHH-hcCCeEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD--SIRSKAVILVANKTDLVRCRVVTDEDGKDMAT-AYDCKFIE 80 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~--~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e 80 (167)
...+++++|++|+|||+++++||+.+..|+..+.+.. ...++|+++||||+|+...+.+..+++..++. .++++|++
T Consensus 74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 153 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE 153 (198)
T ss_pred HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence 3456899999999999999999999999999886643 24579999999999997766677777777754 56899999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhh
Q psy15004 81 TSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
|||++|.||+++|+.+++.+...
T Consensus 154 ~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 154 CSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred ecCCCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999999988753
No 57
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.82 E-value=1.7e-19 Score=130.87 Aligned_cols=97 Identities=31% Similarity=0.465 Sum_probs=84.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
.+...|++++|++|+|||++++.||+.+..|+..+..... ..++|+++||||+|+...+.+..+++..++..+++.|+
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 143 (165)
T cd04140 64 AMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFM 143 (165)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEE
Confidence 3566789999999999999999999999999887765422 25789999999999987677777888888888899999
Q ss_pred EEecCCCCCHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILT 98 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~ 98 (167)
||||++|.||+++|++|+.
T Consensus 144 e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 144 ETSAKTNHNVQELFQELLN 162 (165)
T ss_pred EeecCCCCCHHHHHHHHHh
Confidence 9999999999999999875
No 58
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.82 E-value=2.6e-19 Score=129.30 Aligned_cols=99 Identities=33% Similarity=0.516 Sum_probs=88.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++++|+.+..|+..+.+.....++|+++||||+|+...+.+..+++..++..++++|+++|
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T smart00173 64 MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETS 143 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEee
Confidence 56778999999999999999999999999998886654445789999999999987777777888888888899999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|++|.|++++|++|++++.
T Consensus 144 a~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 144 AKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998765
No 59
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=3.9e-19 Score=132.24 Aligned_cols=101 Identities=26% Similarity=0.429 Sum_probs=90.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++++|+++..|+..+... ...++|+++||||+|+...+.+..+++..++..++++|+++|
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~S 144 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETS 144 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEe
Confidence 4567899999999999999999999999999998765 334789999999999987777777888899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.|++++|.+|++.+....
T Consensus 145 a~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 145 AKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999988653
No 60
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.82 E-value=2.4e-19 Score=130.73 Aligned_cols=98 Identities=23% Similarity=0.310 Sum_probs=88.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+.++.......++|+++||||+|+...+.++.+++..++..++++|+|||
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETS 147 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEe
Confidence 45678999999999999999999999999999987664456899999999999988788888888999999899999999
Q ss_pred cCC---CCCHHHHHHHHHHHH
Q psy15004 83 VGI---NHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~---~~~v~~lf~~l~~~i 100 (167)
|++ +.|++++|..+++++
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 899999999999876
No 61
>PLN03108 Rab family protein; Provisional
Probab=99.82 E-value=6.8e-19 Score=133.04 Aligned_cols=102 Identities=24% Similarity=0.379 Sum_probs=91.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++..+++.++++|+++|
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 4678899999999999999999999999999887654 235789999999999988778888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|+++.||+++|.++++.+..+..
T Consensus 150 a~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987654
No 62
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.81 E-value=5.5e-19 Score=132.38 Aligned_cols=100 Identities=28% Similarity=0.318 Sum_probs=89.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||+++++||+.+..|+..+... ...+|+++||||+|+.+...+..+++..++..+++.|+++|
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 148 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETS 148 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence 5678999999999999999999999999999998654 35789999999999987777777888889988899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|+..+....
T Consensus 149 a~~~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 149 AKENINVEEMFNCITELVLRAK 170 (199)
T ss_pred CCCCcCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887643
No 63
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=2.3e-19 Score=130.81 Aligned_cols=97 Identities=24% Similarity=0.275 Sum_probs=84.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCcc------------ccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCR------------VVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~ 69 (167)
++..||+++|++|+|||++++.||+.+. .|+..+... .+++|+|+||||+|+.... .++.+++..
T Consensus 62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (174)
T smart00174 62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEA 139 (174)
T ss_pred hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHH
Confidence 5667899999999999999999999985 599988654 3579999999999996532 367788889
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+++.+++ .|++|||++|.||+++|+.+++.+.
T Consensus 140 ~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 140 LAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred HHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 9999987 9999999999999999999998775
No 64
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=4e-19 Score=130.01 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=85.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~~~~~~~~~~~e 80 (167)
+...||+++|++|+|||++++++|+.+..|+.++.+.......|+++||||+|+..... +..+++..++..++++|++
T Consensus 65 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e 144 (170)
T cd04108 65 IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWS 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEE
Confidence 56788999999999999999999999999999986654444678999999999965433 3456777888888899999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+||++|.||+++|+.|++.+.+
T Consensus 145 ~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 145 VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.81 E-value=3.2e-19 Score=128.58 Aligned_cols=98 Identities=29% Similarity=0.400 Sum_probs=87.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+...+.+..+++..+++..+++++++|
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETS 145 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEee
Confidence 45688999999999999999999999999999987654456789999999999987677777788888888889999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.||+++|+.|++.+
T Consensus 146 a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 146 AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998765
No 66
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=2.8e-19 Score=136.09 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=83.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.||+.+..|+.++... ..++|++|||||+|+.. +.+..++. .++...++.|++||
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~S 153 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEIS 153 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcC
Confidence 5678999999999999999999999999999999765 35799999999999964 44444444 67778889999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.||+++|.+|++.+...
T Consensus 154 Ak~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 154 AKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999988754
No 67
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.81 E-value=5.9e-19 Score=127.64 Aligned_cols=97 Identities=32% Similarity=0.410 Sum_probs=86.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||++++++|+|||++++.+|+++..|+.++.... ..++|+++||||+|+...+.+..++...++...+++|+++|
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (165)
T cd01868 68 ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETS 146 (165)
T ss_pred HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEE
Confidence 46778999999999999999999999999999987653 34689999999999987777777888888888899999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.|++++|++|+..+
T Consensus 147 a~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 147 ALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 68
>KOG0095|consensus
Probab=99.81 E-value=1.5e-19 Score=127.31 Aligned_cols=102 Identities=26% Similarity=0.363 Sum_probs=92.8
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.-|.+||+.|+++|+|||++-+.||+-+.+|+.+|.++ ....+-.||||||+|+.+.++|+...+++|+.....-|+|+
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyflet 149 (213)
T KOG0095|consen 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLET 149 (213)
T ss_pred HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhh
Confidence 46889999999999999999999999999999999877 34578889999999999999999999999999888899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||+...||+.+|..++..+....
T Consensus 150 sakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 150 SAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred cccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999988776543
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.81 E-value=7.5e-19 Score=127.91 Aligned_cols=99 Identities=25% Similarity=0.346 Sum_probs=88.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.||+.+..|+.++... ..+++|+++||||+|+.+...+..+++..++...++.|+|+|
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETS 147 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 4677999999999999999999999999999998765 246799999999999987677788888889998999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|+++.|++++|..+++.+.+
T Consensus 148 a~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 148 AKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.80 E-value=7.9e-19 Score=125.88 Aligned_cols=98 Identities=26% Similarity=0.392 Sum_probs=85.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+...|++++|++++|||++++.+|+++..|+..+.+.....++|+++||||+|+.. +.+...++..++..++++++++
T Consensus 64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
T cd04138 64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIET 142 (162)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEe
Confidence 356789999999999999999999999999999887654456789999999999975 4556677888888889999999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQI 100 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i 100 (167)
||++|.|++++|+++++.+
T Consensus 143 Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 143 SAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.80 E-value=1.1e-18 Score=125.55 Aligned_cols=95 Identities=27% Similarity=0.348 Sum_probs=85.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..||+++|++|+|||++++++|+.+..|+..+... ..++|+++|+||+|+.....+..+++..++..++++++++|
T Consensus 67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 144 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTS 144 (162)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 4677999999999999999999999999999998653 35799999999999987777778888899999999999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQ 99 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~ 99 (167)
|++|.|++++|++|...
T Consensus 145 a~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 145 VKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998753
No 72
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.80 E-value=1.3e-18 Score=126.69 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=81.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||.++|++|+|||++++.||+.+..|+.++.... .++|+++||||+|+.+ +.+. .+...++...++.|+|+|
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~S 140 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEIS 140 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEe
Confidence 45678999999999999999999999999999997653 3799999999999973 3333 345567777788999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|++.+..
T Consensus 141 a~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 141 AKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCCCCChHHHHHHHHHHHHh
Confidence 99999999999999998864
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.2e-18 Score=126.21 Aligned_cols=96 Identities=25% Similarity=0.317 Sum_probs=85.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
++..+|+++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..+++.+++ .++++
T Consensus 68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 146 (165)
T cd01864 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLET 146 (165)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEE
Confidence 4678999999999999999999999999999999664 345799999999999987777777888889998876 78999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQ 99 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~ 99 (167)
||++|.|++++|+++++.
T Consensus 147 Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 147 SAKESQNVEEAFLLMATE 164 (165)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.79 E-value=2.8e-18 Score=132.80 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=86.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC--------CCCCceEEEEEecCCCCCccccChhHHHHHHHh-
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD--------SIRSKAVILVANKTDLVRCRVVTDEDGKDMATA- 73 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~--------~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~- 73 (167)
+...||.++|++|+|||+++++||+++..|+.++.... ...++|+|+||||+|+...+.+..+++..++..
T Consensus 64 ~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~ 143 (247)
T cd04143 64 MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD 143 (247)
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc
Confidence 56678999999999999999999999999999986531 235789999999999986667777777777653
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 74 YDCKFIETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 74 ~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
.++.|+++||++|.||+++|++|+..+....+
T Consensus 144 ~~~~~~evSAktg~gI~elf~~L~~~~~~p~e 175 (247)
T cd04143 144 ENCAYFEVSAKKNSNLDEMFRALFSLAKLPNE 175 (247)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhccccc
Confidence 46789999999999999999999987754443
No 75
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=1.7e-18 Score=127.96 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=86.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc----cccChhHHHHHHHhcCC-
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC----RVVTDEDGKDMATAYDC- 76 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~----~~v~~~~~~~~~~~~~~- 76 (167)
+...|++++|++|+|||++++.||+++. .|+..+... ..++|+|+||||+|+... +.+..+++..++..+++
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~ 142 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAF 142 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCc
Confidence 4567899999999999999999999985 598887543 357899999999999653 34667788889999988
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
+|++|||++|.||+++|..+++.+.....
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999886543
No 76
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.79 E-value=1.5e-18 Score=126.23 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=83.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC---CCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS---IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~---~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~ 78 (167)
++..||+++|++|+|||+++++||+.+..|+.++..... ..++|+++||||+|+. .+.+..+++.+++.++++ +|
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPY 148 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeE
Confidence 567899999999999999999999999999988865432 2568999999999996 466777888999988875 89
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~ 99 (167)
+++||++|.|++++|++++++
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999999875
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.79 E-value=2.2e-18 Score=124.40 Aligned_cols=96 Identities=26% Similarity=0.335 Sum_probs=84.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...+++++|++|+|||++++++|+.+..|+..+.... .++|+++||||+|+.+..++...++..++..++++++++|
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTS 145 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEe
Confidence 56789999999999999999999999999999986652 4689999999999987776777677778888889999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.|++++|+.|++.+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCChHHHHHHHHHHh
Confidence 999999999999998864
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.79 E-value=1.8e-18 Score=124.59 Aligned_cols=97 Identities=28% Similarity=0.309 Sum_probs=86.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+.++... ..+++|+++|+||+|+...+.+..+++..++...++.|+++|
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETS 143 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEE
Confidence 5678899999999999999999999999999988654 346899999999999987777788888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|+++.|++++|+++++.+
T Consensus 144 a~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 144 ALTGENVEEAFLKCARSI 161 (161)
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.78 E-value=2.6e-18 Score=125.00 Aligned_cols=101 Identities=28% Similarity=0.394 Sum_probs=88.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC-CeEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD-CKFIE 80 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e 80 (167)
.+...||+++|++|+|||++++++|+.+..|...+.+.....++|+++||||+|+.+.+.+..+++..++..++ +++++
T Consensus 64 ~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd04177 64 AMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYE 143 (168)
T ss_pred hhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEE
Confidence 35678999999999999999999999999999988765445689999999999998777777778888888888 79999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+||++|.|++++|++++.++.-
T Consensus 144 ~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 144 TSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred eeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999987753
No 80
>PLN03118 Rab family protein; Provisional
Probab=99.78 E-value=9.2e-18 Score=126.74 Aligned_cols=101 Identities=23% Similarity=0.292 Sum_probs=87.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHH-HHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQ-CLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~-~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
++..||+++|++|+|||++++++|+.+.. |...+.......+.|+++||||+|+...+.+..+++..++...++.|+++
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~ 157 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLEC 157 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEE
Confidence 56789999999999999999999999976 66666444334568999999999998777777788888888889999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
||+++.|++++|++|+..+...
T Consensus 158 SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 158 SAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 81
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.77 E-value=8.8e-18 Score=120.90 Aligned_cols=99 Identities=27% Similarity=0.348 Sum_probs=87.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.....+..+.+..++...+++++++|
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~S 143 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETS 143 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEe
Confidence 45778999999999999999999999999999986653 25799999999999987666777788888888899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|+.+++.+.+
T Consensus 144 a~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 144 AKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998754
No 82
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.77 E-value=5.4e-18 Score=123.94 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=80.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCC------------ccccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVR------------CRVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~~ 69 (167)
+...|++++|++|+|||++++.||+.+. .|+..+... ..++|+++||||+|+.. .+.+..+++..
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH
Confidence 4567899999999999999999999984 699888643 34689999999999963 35677788999
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
+++..++ .|+||||++|.||+++|+.++-
T Consensus 142 ~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 142 LAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 9998887 9999999999999999988753
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=3.2e-18 Score=125.07 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=81.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.. ..++|+++|+||+|+.+.+.+...+...+++.+++ .++++
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHF 146 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEE
Confidence 567889999999999999999999999999987632 24789999999999976555545566778888887 47999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~ 101 (167)
||++|.|++++|+.|++.+.
T Consensus 147 Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 147 SSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EeccCccHHHHHHHHHHHhh
Confidence 99999999999999998875
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.76 E-value=9.8e-18 Score=121.30 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=81.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+...||+++|++|+|||++++.+|+++..|+..+... ..++|+++|+||+|+... + .+++..++..++++++++
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~ 138 (161)
T cd04124 64 TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYV 138 (161)
T ss_pred hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEE
Confidence 35678999999999999999999999999999999654 357899999999998532 1 244556777778999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||++|.|++++|+.+++.+.+
T Consensus 139 Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 139 SAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988875
No 85
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.76 E-value=1.6e-17 Score=123.32 Aligned_cols=100 Identities=25% Similarity=0.295 Sum_probs=85.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc----cccChhHHHHHHHhcCCeE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC----RVVTDEDGKDMATAYDCKF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~----~~v~~~~~~~~~~~~~~~~ 78 (167)
+...||+++|++|+|||++++.+|+.+..|+..+... ..++|+++||||+|+... +.+..+++..++..+++++
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQH 143 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeE
Confidence 4567899999999999999999999999999998654 247899999999998632 3455567778888888999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
+++||++|.||+++|+.+++.+....
T Consensus 144 ~~~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 144 FETSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887543
No 86
>KOG4252|consensus
Probab=99.76 E-value=2e-18 Score=125.04 Aligned_cols=99 Identities=21% Similarity=0.267 Sum_probs=91.9
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
|..||++|.+.++||+.||+.||+.+..|++++... ...+|.++|-||+||.+..++...+++.+++...+.++.+|+
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSv 163 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSV 163 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhh
Confidence 568999999999999999999999999999999654 568999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy15004 84 GINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~~~ 104 (167)
+...||.++|..|+..+.+..
T Consensus 164 ked~NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 164 KEDFNVMHVFAYLAEKLTQQK 184 (246)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999998877654
No 87
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.76 E-value=7.5e-18 Score=122.90 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=80.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC------C
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD------C 76 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~------~ 76 (167)
++..||+++|++|+|||++++.+|+++..|+..+.......+.|+++|+||+|+.+ .++.+++..++...+ +
T Consensus 59 ~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~ 136 (169)
T cd04158 59 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSW 136 (169)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcE
Confidence 56789999999999999999999999999998886543345689999999999964 345566666654222 3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.+++|||++|.||+++|++|++.+...
T Consensus 137 ~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 137 YIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred EEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 688999999999999999999887653
No 88
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.76 E-value=1.7e-17 Score=118.94 Aligned_cols=97 Identities=26% Similarity=0.434 Sum_probs=85.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|+.++|++|+|||++++++|+.+..|+.++..... .++|+++|+||+|+...+.+..++...++...+++++++|
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 143 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETS 143 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 567789999999999999999999999999999876533 3789999999999987677777777888888899999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|+++.|++++|++|.+.+
T Consensus 144 ~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 144 AKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 89
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.76 E-value=1.2e-17 Score=123.80 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=83.5
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCC----------ccccChhHHHHHHH
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVR----------CRVVTDEDGKDMAT 72 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~----------~~~v~~~~~~~~~~ 72 (167)
...++.++|++|+|||++++++|+.+. .|+..+... .+++|+|+||||+|+.. .+.+..+++..+++
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK 143 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH
Confidence 345788999999999999999999996 599988654 34699999999999854 24455677888999
Q ss_pred hcCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 73 AYDC-KFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 73 ~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
.+++ .|++|||++|.||+++|+.+++.+....
T Consensus 144 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 144 EIGAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred HhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 9985 8999999999999999999998887643
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.76 E-value=1.3e-17 Score=121.54 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=82.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
+...||+++|++|+|||++++.+|+.+. .|+..+... ..++|+++||||+|+.+. +.++.+++..
T Consensus 64 ~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 64 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 4567899999999999999999999985 688887644 467999999999998643 3567788899
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+++..++ +|++|||++|.||+++|+.++..+
T Consensus 142 ~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 142 LAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 9998886 899999999999999999998875
No 91
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=2.2e-17 Score=123.51 Aligned_cols=100 Identities=26% Similarity=0.371 Sum_probs=82.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC-ccccChhHHHHHHH-hcCCeEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR-CRVVTDEDGKDMAT-AYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~e 80 (167)
+...||.++|++|+|||++++.+|+.+..|+..+.......++|+|+|+||+|+.. .+.+..++...... .+++.|++
T Consensus 63 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 142 (198)
T cd04147 63 MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVE 142 (198)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEE
Confidence 45678999999999999999999999999999887764445799999999999965 35555544444443 45678999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+||++|.||+++|++|++.+..
T Consensus 143 ~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 143 TSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred ecCCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998764
No 92
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=9e-18 Score=124.15 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=75.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-----
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC----- 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~----- 76 (167)
.++..||+++|++|+|||++++++|+.+..|+..+.......++|++|||||+|+.+.. .. ..+....++
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~---~~~~~~l~l~~~~~ 150 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NA---AEITDKLGLHSLRQ 150 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CH---HHHHHHhCccccCC
Confidence 36778999999999999999999999988888777543334578999999999997532 22 233333332
Q ss_pred ---eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 77 ---KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 77 ---~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.+++|||++|+||+++|++|++++..+
T Consensus 151 ~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 151 RHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 466899999999999999999988653
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.75 E-value=2.9e-17 Score=118.06 Aligned_cols=99 Identities=24% Similarity=0.419 Sum_probs=86.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...+++.+|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.....+..++...++..++++++++|
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETS 143 (164)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEee
Confidence 56678999999999999999999999999998887654446799999999999976555566777788888899999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|++|.|++++|+.+.+++.
T Consensus 144 a~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 144 AKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998765
No 94
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.75 E-value=4.1e-18 Score=125.17 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=74.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHH-----HhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA-----TAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~ 76 (167)
.++..||++||++|+|||++++++|+.+..|+..+.......++|++|||||+||.+.. ..++..... ....+
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~ 149 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNW 149 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcE
Confidence 35678999999999999999999999998888887544334578999999999996432 222222211 12234
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 77 KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.++++||++|.||+++|++|.+.+
T Consensus 150 ~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 150 YIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 577999999999999999998775
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.75 E-value=3.5e-17 Score=117.86 Aligned_cols=97 Identities=28% Similarity=0.365 Sum_probs=86.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++++|+.+..|+..+.... ...+|+++|+||+|+...+.+..++...++..+++.++++|
T Consensus 66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd01860 66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETS 144 (163)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEE
Confidence 45678999999999999999999999999999987653 36799999999999986666677788888888899999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.|++++|++|++.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 145 AKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999999875
No 96
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.75 E-value=2.8e-17 Score=118.23 Aligned_cols=96 Identities=27% Similarity=0.341 Sum_probs=84.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...+++++|++|+|||++++.+|+.+..|+..+.......++|+++||||+|+.. ..+..++...++...+++++++|
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~S 143 (161)
T cd01863 65 LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETS 143 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEe
Confidence 45678899999999999999999999999999987765566899999999999973 44556778888888899999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQ 99 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~ 99 (167)
|++|.|++++|+.++..
T Consensus 144 a~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 144 AKTRDGVQQAFEELVEK 160 (161)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998865
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.75 E-value=8.1e-18 Score=122.87 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=74.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH-----hcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT-----AYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 77 (167)
+++.||++||++|+|||++++.+|+++..|+.++.......++|++||+||+|+.+. +..+++..+.. ...+.
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~ 146 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWY 146 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEE
Confidence 467799999999999999999999999888877754323457899999999999642 34455555432 12347
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~ 98 (167)
+++|||++|.||+++|++|.+
T Consensus 147 ~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 147 VQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEeeCCCCCChHHHHHHHhc
Confidence 899999999999999999864
No 98
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.75 E-value=3e-17 Score=117.96 Aligned_cols=96 Identities=28% Similarity=0.381 Sum_probs=84.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+...+..++...++...++.++++|
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETS 143 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEe
Confidence 46778999999999999999999999999999986542 23699999999999976666777788888888889999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQ 99 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~ 99 (167)
|+++.|++++|.+|.+.
T Consensus 144 a~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 144 AKAGHNVKELFRKIASA 160 (161)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999864
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.74 E-value=4.7e-18 Score=122.96 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=71.7
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhH-HHHHH----HhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED-GKDMA----TAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~-~~~~~----~~~~~ 76 (167)
.++..||++||++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+.. ..++ ...+. ...++
T Consensus 59 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 59 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNW 136 (159)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCE
Confidence 35678999999999999999999999998888777543233468999999999996432 2222 22221 12234
Q ss_pred eEEEEecCCCCCHHHHHHHHHH
Q psy15004 77 KFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
.++++||++|.||+++|++|.+
T Consensus 137 ~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCCCCHHHHHHHHhc
Confidence 6789999999999999999864
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.74 E-value=7e-18 Score=122.69 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=78.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh----hHHHHHHHhcCCe
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD----EDGKDMATAYDCK 77 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~----~~~~~~~~~~~~~ 77 (167)
.++..||+++|++|+|||++++.+|+.+..|+.++... ..++|+++||||+|+...+.+.. ..+..++++.++.
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 136 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI 136 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE
Confidence 45678999999999999999999999999999888543 25899999999999976554432 2345566777889
Q ss_pred EEEEecCC------CCCHHHHHHHHHH
Q psy15004 78 FIETSVGI------NHNVDELLVGILT 98 (167)
Q Consensus 78 ~~e~SA~~------~~~v~~lf~~l~~ 98 (167)
|++|||++ ++||+++|+.++.
T Consensus 137 ~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 137 LQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 99999988 9999999998864
No 101
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.73 E-value=8.8e-17 Score=116.62 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=86.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC---CCCceEEEEEecCCCCCccccChhHHHHHHHhcC-CeE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS---IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD-CKF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~---~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~ 78 (167)
+...|++++|++|+|||++++.+|+.+..|...+..... ..++|+++|+||+|+.....+..++...++...+ .++
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPY 144 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceE
Confidence 467889999999999999999999999899887654422 2378999999999998656666777778888887 799
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+++||++|.|++++|+.+++.+.+.
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 145 FETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988765
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.73 E-value=1e-17 Score=123.95 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=75.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH-H----HHhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD-M----ATAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-~----~~~~~~~ 77 (167)
++..||+++|++|+|||++++++|+.+..|+.++.......++|++||+||.|+.+.. ..++... + +....+.
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~ 154 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWY 154 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEE
Confidence 5678999999999999999999999988877776443233568999999999986422 2222211 1 1112235
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
++++||++|.|++++|++|.+.+..++
T Consensus 155 ~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 155 IQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 779999999999999999999887764
No 103
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=8.3e-17 Score=116.66 Aligned_cols=97 Identities=24% Similarity=0.371 Sum_probs=84.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
....|++.+|++|+|||++++.+|+.+..|+.++... ...++|+++|+||+|+.+.+.+..+.+..+.......++++|
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~S 150 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETS 150 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEee
Confidence 3467899999999999999999999999999888654 234789999999999987777777777778777778999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.|++++|++|.+.+
T Consensus 151 a~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 151 AKESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 104
>KOG0393|consensus
Probab=99.73 E-value=2.1e-17 Score=122.56 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=87.4
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHHH
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKDM 70 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~ 70 (167)
.+.-|.++|+||++|++.++.||+++ ..|+.++..+ .+++|+||||+|.||.++ ..|+.+++..+
T Consensus 70 RplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 70 RPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred cccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 35578899999999999999999997 6799999765 478999999999999843 25778999999
Q ss_pred HHhcCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 71 ATAYDC-KFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 71 ~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++.|+ .|+||||+++.|++++|+..+..+....
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 999995 8999999999999999999999888643
No 105
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.71 E-value=1.5e-16 Score=113.75 Aligned_cols=98 Identities=33% Similarity=0.467 Sum_probs=86.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...+++++|++|+|||++++++++++..|+..+........+|+++|+||+|+.....+..+++..++..++++++++|
T Consensus 63 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (160)
T cd00876 63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETS 142 (160)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEec
Confidence 45678899999999999999999999999998887654435799999999999987677777888889888889999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|+++.|++++|++|++.+
T Consensus 143 ~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 143 AKDNINIDEVFKLLVREI 160 (160)
T ss_pred cCCCCCHHHHHHHHHhhC
Confidence 999999999999998753
No 106
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.71 E-value=2.6e-16 Score=115.45 Aligned_cols=102 Identities=29% Similarity=0.397 Sum_probs=87.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|+..+|++|+|||+++..+|+.+..|+..+.+.....+.|+|+|+||+|+...+.+..++...++..++++++++|
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESS 144 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEe
Confidence 34568889999999999999999999999988887654445789999999999976666666677778888889999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|+++.|++++|.++.+.+....
T Consensus 145 a~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 145 ARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887643
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=9.8e-17 Score=117.25 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=75.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH-----hcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT-----AYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 77 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.. ..++...+.. ..+++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 151 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWR 151 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceE
Confidence 5677999999999999999999999998888887554334679999999999996532 3344444432 23568
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~ 98 (167)
|+++||++|.|++++|++++.
T Consensus 152 ~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 152 IQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEeccCCCCcCHHHHHHHHhc
Confidence 999999999999999999864
No 108
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.70 E-value=3.2e-16 Score=114.32 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=79.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
+...+|.++|++++|||++++++|+.+. .|+..+... ..++|+++|+||+|+... ..+...++..
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~ 142 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 142 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHH
Confidence 3457889999999999999999999985 588887653 357899999999998642 2344577888
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
++...+. .|++|||++|.||+++|++|++.+
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 143 MANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 8888775 899999999999999999998754
No 109
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.68 E-value=1e-16 Score=116.85 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=75.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC----hhHHHHHHHhc--C
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT----DEDGKDMATAY--D 75 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~----~~~~~~~~~~~--~ 75 (167)
.++..||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+... ......++.+. .
T Consensus 58 ~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~ 137 (167)
T cd04161 58 GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSL 137 (167)
T ss_pred HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCce
Confidence 45688999999999999999999999999999988655444578999999999997644211 11122333333 3
Q ss_pred CeEEEEecCCC------CCHHHHHHHHHH
Q psy15004 76 CKFIETSVGIN------HNVDELLVGILT 98 (167)
Q Consensus 76 ~~~~e~SA~~~------~~v~~lf~~l~~ 98 (167)
+.+++|||++| .|+++.|+||.+
T Consensus 138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 57888999998 899999999974
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=6.6e-16 Score=112.15 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=75.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhcC--Ce
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAYD--CK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~ 77 (167)
+...++.++|++|+|||++++.+|+.+. .|+..+.... .++|+++||||+|+.+.... ..++...++..++ ..
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (166)
T cd01893 63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIET 140 (166)
T ss_pred HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccE
Confidence 4566789999999999999999999985 5888776542 47899999999999765432 1233344444443 38
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
|++|||++|.|++++|+.+.+.+.
T Consensus 141 ~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 141 CVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred EEEeccccccCHHHHHHHHHHHhc
Confidence 999999999999999999988765
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.67 E-value=4.5e-16 Score=115.08 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=78.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH--h----cC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT--A----YD 75 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~--~----~~ 75 (167)
.++..||+++|++|+|||++++.+++.+..|+.++.......++|+++|+||+|+.+. +..++...+.. . .+
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 144 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTP 144 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCc
Confidence 3567899999999999999999999999989888865434457899999999998642 23333443332 1 13
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
++++++||++|.|++++|++|++.+.+..
T Consensus 145 ~~~~~~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 145 WHVQPACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred eEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999887543
No 112
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.67 E-value=5.8e-16 Score=114.63 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=77.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh---------
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA--------- 73 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~--------- 73 (167)
++..|++++|++|+|||+++..+|+....|+..+.......+.|+++|+||+|+.. .+..++...+...
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGV 156 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccc
Confidence 45678999999999999999999998888888886543445799999999999864 4445555555432
Q ss_pred -------cCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 74 -------YDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 74 -------~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
..+.+++|||++|.|++++|++|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 224799999999999999999998753
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.66 E-value=2.6e-16 Score=115.34 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=73.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhH-HHHHH----HhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED-GKDMA----TAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~-~~~~~----~~~~~ 76 (167)
..+..||+++|++|+|||++++++|..+..|+..+.......++|+++|+||+|+.+. +..++ ...+. ...++
T Consensus 74 ~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~ 151 (174)
T cd04153 74 SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTW 151 (174)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCce
Confidence 3567889999999999999999999988888777755433457899999999998642 22222 22222 23456
Q ss_pred eEEEEecCCCCCHHHHHHHHHH
Q psy15004 77 KFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
++++|||++|.||+++|++|++
T Consensus 152 ~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 152 HIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEEecccCCCCCHHHHHHHHhc
Confidence 7999999999999999999874
No 114
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.65 E-value=2.1e-15 Score=107.05 Aligned_cols=94 Identities=31% Similarity=0.418 Sum_probs=82.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...+++++|++|+|||++++++++.+..|+..+.... ....|+++|+||+|+.....+..++...++...+++++++|
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 143 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETS 143 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEe
Confidence 45778899999999999999999999999999987652 25789999999999975566677888888888899999999
Q ss_pred cCCCCCHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGIL 97 (167)
Q Consensus 83 A~~~~~v~~lf~~l~ 97 (167)
|+++.|++++|.+|+
T Consensus 144 a~~~~~i~~~~~~i~ 158 (159)
T cd00154 144 AKTGENVEELFQSLA 158 (159)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999999886
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.65 E-value=5e-16 Score=111.60 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=71.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCCCccccChhHHHHH---HH--hcC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLVRCRVVTDEDGKDM---AT--AYD 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~---~~--~~~ 75 (167)
++..||+++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+... .++.... .. ...
T Consensus 61 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~ 138 (162)
T cd04157 61 LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKP 138 (162)
T ss_pred HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCce
Confidence 567899999999999999999999998889888755321 24799999999999965321 1222211 11 123
Q ss_pred CeEEEEecCCCCCHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
+.++++||++|.|++++|++|.+
T Consensus 139 ~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCCchHHHHHHHhc
Confidence 46899999999999999999875
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.64 E-value=4.1e-16 Score=112.06 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=72.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH------HHHHhcCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK------DMATAYDC 76 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~------~~~~~~~~ 76 (167)
++..||+++|++|+|||++++.+|..+..|+.++.......++|+++|+||+|+.... ..++.. .++...++
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~ 137 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDW 137 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcE
Confidence 4567899999999999999999999998888887654333579999999999986421 122221 12222345
Q ss_pred eEEEEecCCCCCHHHHHHHHHH
Q psy15004 77 KFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
++++|||++|.||+++|++|++
T Consensus 138 ~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCCChHHHHHHHhc
Confidence 7999999999999999998864
No 117
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.64 E-value=9.8e-16 Score=118.49 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=76.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
.+++.|++++|++++|||++++. +|+.+..|+..+.. .++|+++|+||+||.+.+.+..+....+. .+++++++
T Consensus 28 ~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v~~ 102 (245)
T TIGR00157 28 ELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQVLM 102 (245)
T ss_pred eEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeEEE
Confidence 35778999999999999999887 99999999987743 47899999999999765555444454444 57899999
Q ss_pred EecCCCCCHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILT 98 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~ 98 (167)
+||++|.|++++|+.+..
T Consensus 103 ~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 103 TSSKNQDGLKELIEALQN 120 (245)
T ss_pred EecCCchhHHHHHhhhcC
Confidence 999999999999998765
No 118
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.64 E-value=2.8e-15 Score=108.63 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=77.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCcc-----------ccChhHHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRCR-----------VVTDEDGKDM 70 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~-----------~v~~~~~~~~ 70 (167)
....+++.+|++++|||++++.+|... ..|+..+... ..++|+++||||+|+.... .+..+++..+
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 64 LRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHH
Confidence 345678899999999999999999886 4588777554 2479999999999997544 3356677888
Q ss_pred HHhcCC-eEEEEecCCCCCHHHHHHHHHH
Q psy15004 71 ATAYDC-KFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 71 ~~~~~~-~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
+..+++ +|+++||++|.|++++|+.|++
T Consensus 142 ~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 142 AKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 888887 9999999999999999998875
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.63 E-value=9.4e-16 Score=110.33 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=69.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHH-HHHH----HhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG-KDMA----TAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~ 77 (167)
+++.||+++|++|+|||++++.++.....|+..+.+.....++|+++|+||+|+.+... ..+. ..+. ...+++
T Consensus 59 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~ 136 (158)
T cd04151 59 YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWS 136 (158)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEE
Confidence 46789999999999999999988887766665553322235789999999999864321 1121 1111 112357
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~ 98 (167)
++++||++|.|++++|++|++
T Consensus 137 ~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCCCCHHHHHHHHhc
Confidence 999999999999999999875
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=2.1e-15 Score=108.24 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=73.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHH-----HhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA-----TAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 77 (167)
....+|.++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.... ..++..... ....++
T Consensus 59 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 136 (158)
T cd00878 59 LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWH 136 (158)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEE
Confidence 4567899999999999999999999998888887664444688999999999987533 122222222 223458
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~ 98 (167)
++++||++|.|++++|++|+.
T Consensus 137 ~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCCCHHHHHHHHhh
Confidence 999999999999999999875
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.61 E-value=5.5e-15 Score=106.88 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=74.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh-------cC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA-------YD 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-------~~ 75 (167)
++..+|+++|++|+|||.+++++++.+..|+..+.+.....++|+++|+||+|+... +..++...+... .+
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCc
Confidence 466789999999999999999999999889888765433457999999999998653 223344443332 24
Q ss_pred CeEEEEecCCCCCHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
++++++||++|.|++++|++|++
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 58999999999999999999875
No 122
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.61 E-value=4.9e-15 Score=111.51 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=71.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC------------------CCCCceEEEEEecCCCCCccccC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD------------------SIRSKAVILVANKTDLVRCRVVT 63 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~------------------~~~~~piilvgNK~Dl~~~~~v~ 63 (167)
.++..||+++|++|+|||++++.||+++..|+.++.... ...++|+||||||+||.+++.++
T Consensus 69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~ 148 (202)
T cd04102 69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESS 148 (202)
T ss_pred HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccc
Confidence 356789999999999999999999999999999997532 12478999999999998776665
Q ss_pred hhH----HHHHHHhcCCeEEEEecCCCCC
Q psy15004 64 DED----GKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 64 ~~~----~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
.+. ...+|.+.+++.++.++.++..
T Consensus 149 ~~~~~~~~~~ia~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 149 GNLVLTARGFVAEQGNAEEINLNCTNGRL 177 (202)
T ss_pred hHHHhhHhhhHHHhcCCceEEEecCCccc
Confidence 543 4457888999999998886654
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.60 E-value=1.8e-14 Score=108.97 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=81.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||.+++++|+|||+++..+|..+..|+..+... ..++|+++||||+|+.+ +.+.. +...++...++.|+++|
T Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~S 149 (215)
T PTZ00132 74 LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKD-RQVKA-RQITFHRKKNLQYYDIS 149 (215)
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCcc-ccCCH-HHHHHHHHcCCEEEEEe
Confidence 4567899999999999999999999999999998654 35789999999999864 33333 33456777889999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.|++++|.+|++.+...
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999988754
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.57 E-value=1.4e-14 Score=107.19 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=73.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh---------
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA--------- 73 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~--------- 73 (167)
++..||+++|++|+|+|++++++|+....|+.++.......++|+++|+||+|+.. .++.++......-
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~ 154 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGK 154 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccc
Confidence 56789999999999999999999999988888875533345789999999999863 2334443332210
Q ss_pred ---cCCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 74 ---YDCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 74 ---~~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
....+++|||++|.|+++++++|...
T Consensus 155 ~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 155 VGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 12368999999999999999999764
No 125
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=8.1e-15 Score=103.55 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=65.4
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGI 85 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~ 85 (167)
+|+++|++|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ +.+..+++..+++..+. +++++||++
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 5789999999999999998865 3454322 239999999999964 33445666777777776 899999999
Q ss_pred CCCHHHHHHHHH
Q psy15004 86 NHNVDELLVGIL 97 (167)
Q Consensus 86 ~~~v~~lf~~l~ 97 (167)
|.|++++|+.+.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999998874
No 126
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=2.5e-14 Score=115.20 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=78.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
..+++.++++|+|||+++.++++++..|..++..... ..+.|+++|+||+|+.+...+..+....++...+++++++||
T Consensus 231 lrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSA 310 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISA 310 (335)
T ss_pred HHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEc
Confidence 3456789999999999998889999999999876522 246899999999999765544444455555666789999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15004 84 GINHNVDELLVGILTQIRL 102 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~ 102 (167)
+++.||+++|++|.+.+..
T Consensus 311 ktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 311 VTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 127
>KOG3883|consensus
Probab=99.56 E-value=5.4e-14 Score=99.66 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=90.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
++-..|+.-+|+|++|||..|++||+.++.+..+|........+||++.|||+|+.+.+++..+.++.||+......+|+
T Consensus 76 eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eV 155 (198)
T KOG3883|consen 76 ELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEV 155 (198)
T ss_pred hhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEE
Confidence 45678999999999999999999999887766667666666789999999999999889999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+|.+...+-|.|..+...+..
T Consensus 156 ta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred EeccchhhhhHHHHHHHhccC
Confidence 999999999999999887754
No 128
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.55 E-value=6e-14 Score=103.19 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=77.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH------hcC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT------AYD 75 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~------~~~ 75 (167)
..++.||.++|++|||+|.+|++.+.+....+.++.......++|+++++||.|+.+. +..++...... ...
T Consensus 73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~ 150 (175)
T PF00025_consen 73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRP 150 (175)
T ss_dssp GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSC
T ss_pred ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCc
Confidence 4678999999999999999999999998888888766545568999999999998653 22333332221 234
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+.++.|||.+|+|+.+.|+||.++|
T Consensus 151 ~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 151 WSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeeeccCCcCHHHHHHHHHhcC
Confidence 5789999999999999999999875
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.55 E-value=2.6e-14 Score=103.47 Aligned_cols=91 Identities=19% Similarity=0.100 Sum_probs=71.5
Q ss_pred cCCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHh-cCCeEEEEecC
Q psy15004 8 YETPHGFIIVYSTIDL-ASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATA-YDCKFIETSVG 84 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~-~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~SA~ 84 (167)
++.+|++|+|||++++ ++++.+..|.+++..... ..++|+++|+||+|+.+...+ .+....+... .+.+++++||+
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecC
Confidence 3459999999999999 799999999988865421 246899999999999764443 2334444454 36789999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy15004 85 INHNVDELLVGILTQ 99 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~ 99 (167)
++.|++++|+++.+.
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998864
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.52 E-value=6.3e-14 Score=102.46 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=70.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC---eE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC---KF 78 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---~~ 78 (167)
.++..||+++|++|+|||+++..+++....|.... . .++|+++|+||+|+.+.. .......+++.+++ .+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccE
Confidence 35677899999999999999877777776665433 1 368999999999986422 12233456666665 48
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+++||++|.|++++|+.|+..+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999999999998765
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.51 E-value=9e-14 Score=100.57 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=67.5
Q ss_pred CcEEEEEEeCCCHHHH--HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 11 PHGFIIVYSTIDLASF--HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~--~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
+|++|+|||++++.++ +....|+..+... ..+.|+|+|+||+|+.....+.. ...+....++++++|||++|.|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 6899999999987654 6666788887543 24789999999999976544332 4455555567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy15004 89 VDELLVGILTQI 100 (167)
Q Consensus 89 v~~lf~~l~~~i 100 (167)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.50 E-value=1.6e-13 Score=99.75 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=69.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC------
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC------ 76 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~------ 76 (167)
....|++++|++++|||+++..+|.....|+..+.......++|+++++||+|+.+... ...+....++
T Consensus 74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----~~~i~~~l~~~~~~~~ 148 (173)
T cd04155 74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP-----AEEIAEALNLHDLRDR 148 (173)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC-----HHHHHHHcCCcccCCC
Confidence 34578899999999999999999998887877765443345799999999999864321 2223333332
Q ss_pred --eEEEEecCCCCCHHHHHHHHHH
Q psy15004 77 --KFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 77 --~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
.++++||++|.|++++|++|++
T Consensus 149 ~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 149 TWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred eEEEEEeECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 133
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.50 E-value=9.5e-14 Score=98.59 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHH-----HHhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDM-----ATAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----~~~~~~~ 77 (167)
+...|++++|++++|+|++++.+|.....|+.++.......++|+++|+||+|+.+...+ .+.... ....+++
T Consensus 60 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 60 MWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVS 137 (159)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceE
Confidence 456789999999999999999999988888877755433457899999999998654321 111111 1122457
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~ 98 (167)
++++||++|.|++++|++|.+
T Consensus 138 ~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCCChHHHHHHHhh
Confidence 899999999999999999865
No 134
>KOG0073|consensus
Probab=99.45 E-value=7.1e-13 Score=94.86 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=82.5
Q ss_pred ChhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc---cccCh-hHHHHHHHhcCC
Q psy15004 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTD-EDGKDMATAYDC 76 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~---~~v~~-~~~~~~~~~~~~ 76 (167)
++-+..||+.+||+|+|+|.+|+..|++....+..+.......+.|+++++||.|+... ..+.. .....+++...+
T Consensus 74 r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~ 153 (185)
T KOG0073|consen 74 RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW 153 (185)
T ss_pred HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc
Confidence 35688999999999999999999999998877777665545567899999999999732 22221 123345577789
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+.+.|||.+|+++.+.|+||+..+.++
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999988763
No 135
>PLN00023 GTP-binding protein; Provisional
Probab=99.44 E-value=4.7e-13 Score=106.60 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=62.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-----------CCCceEEEEEecCCCCCcc---c---cCh
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-----------IRSKAVILVANKTDLVRCR---V---VTD 64 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-----------~~~~piilvgNK~Dl~~~~---~---v~~ 64 (167)
.++..||+++|++|+|||++++.||+++..|+.++..... ..++|+||||||+||...+ . +..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 4678899999999999999999999999999999976521 1358999999999997542 2 357
Q ss_pred hHHHHHHHhcCC
Q psy15004 65 EDGKDMATAYDC 76 (167)
Q Consensus 65 ~~~~~~~~~~~~ 76 (167)
++++++|++.|+
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 899999998874
No 136
>KOG4423|consensus
Probab=99.43 E-value=4.1e-13 Score=98.02 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=88.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh---CCCCCceEEEEEecCCCCCccccC-hhHHHHHHHhcCC-e
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKK---DSIRSKAVILVANKTDLVRCRVVT-DEDGKDMATAYDC-K 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~---~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~~~~~~~~-~ 77 (167)
|+.-||+.|.+..+|||+|+..+|+.+..|.+++... .....+|+|+.+||||........ ......+.+++|+ .
T Consensus 91 mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~g 170 (229)
T KOG4423|consen 91 MTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEG 170 (229)
T ss_pred eEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccc
Confidence 7889999999999999999999999999999998543 234568999999999986432222 3566677888887 7
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhhCCCCC
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRLKLDNPPE 109 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~~~~~~~~ 109 (167)
++|||+|.+.|++|+...|++.+..+...+.+
T Consensus 171 wtets~Kenkni~Ea~r~lVe~~lvnd~q~~~ 202 (229)
T KOG4423|consen 171 WTETSAKENKNIPEAQRELVEKILVNDEQPIK 202 (229)
T ss_pred eeeeccccccChhHHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999877655443
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.43 E-value=7e-13 Score=99.30 Aligned_cols=87 Identities=21% Similarity=0.118 Sum_probs=68.8
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGIN 86 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~ 86 (167)
++.++|++++|+|++++.+++.+..|...+... ...++|+++|+||+|+.....+. ......+.+++++||+++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 367899999999999998888877777776543 33468999999999996543221 334445678999999999
Q ss_pred CCHHHHHHHHHHH
Q psy15004 87 HNVDELLVGILTQ 99 (167)
Q Consensus 87 ~~v~~lf~~l~~~ 99 (167)
.|++++|++|...
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 138
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.42 E-value=7e-13 Score=96.29 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=72.0
Q ss_pred hcccCCCcEEEEEEeCCCH------HHHHHHHHHHHHHHhhCC------CCCceEEEEEecCCCCCccccChhHHHHHHH
Q psy15004 5 IANYETPHGFIIVYSTIDL------ASFHVAEQCLQALWKKDS------IRSKAVILVANKTDLVRCRVVTDEDGKDMAT 72 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~------~s~~~~~~~~~~l~~~~~------~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~ 72 (167)
..+++++|++++|+|+++. .+++.+..|..++..... ..+.|+++|+||+|+.....+..........
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~ 148 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELAL 148 (176)
T ss_pred HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhc
Confidence 3467889999999999988 588888888888754422 1368999999999997544433322233444
Q ss_pred hcCCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 73 AYDCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 73 ~~~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
..+..++++||+++.|++++++.+...
T Consensus 149 ~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 149 EEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 456789999999999999999988764
No 139
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.42 E-value=1.1e-12 Score=105.39 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=73.4
Q ss_pred ccCCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 7 NYETPHGFIIVYSTIDL---ASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~---~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+++.+|++|+|+|+++. ++++++..|..++..... ..+.|+++|+||+|+.+... ..+..+.++..++.+++++|
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iS 310 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPIS 310 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEE
Confidence 34579999999999986 688888888888865421 24689999999999975433 23445556666778999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|+++.||+++|+.|.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998754
No 140
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.40 E-value=1.5e-12 Score=94.26 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=67.9
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC--eEEEEecC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC--KFIETSVG 84 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~--~~~e~SA~ 84 (167)
++++||++|+|||+++..++. ..|+..+ ..+.|+++++||+|+.+. ..+....++...++ +++++||+
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~ 130 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSH 130 (158)
T ss_pred HHhcCCEEEEEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECC
Confidence 478999999999999887763 3455544 135789999999998642 34556677777775 89999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15004 85 INHNVDELLVGILTQIRLK 103 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i~~~ 103 (167)
+|.|++++|+.+.+.+...
T Consensus 131 ~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 131 DPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred CccCHHHHHHHHHHhchhh
Confidence 9999999999998877543
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.37 E-value=5.1e-12 Score=90.15 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=67.4
Q ss_pred hhcccC--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 4 CIANYE--TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 4 ~~~y~~--~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+..|+. ++|++|+|+|.++++.. ..|..++.. .++|+++|+||+|+.+...+.. ....++..++++++++
T Consensus 66 ~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~i 137 (158)
T cd01879 66 ARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPT 137 (158)
T ss_pred HHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEE
Confidence 456675 99999999999886443 235545433 2689999999999976544433 3456777778999999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQ 99 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~ 99 (167)
||.++.|++++|+.|.+.
T Consensus 138 Sa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 138 SARKGEGIDELKDAIAEL 155 (158)
T ss_pred EccCCCCHHHHHHHHHHH
Confidence 999999999999988775
No 142
>KOG0075|consensus
Probab=99.35 E-value=1.8e-12 Score=91.33 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=78.0
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc---cccChhHHHHHHHhcCCeE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTDEDGKDMATAYDCKF 78 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~---~~v~~~~~~~~~~~~~~~~ 78 (167)
.|+..||+++++++||.|..|++.++...+.+..+.......++|+++.|||.|+.+. ..+....+..-.++.....
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC 159 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCC 159 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEE
Confidence 6889999999999999999999988887777777766666789999999999998742 1111122222223334568
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
|.+|+++..|++-+.+||+++-..
T Consensus 160 ~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHhhh
Confidence 999999999999999999987653
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.34 E-value=1.7e-11 Score=85.28 Aligned_cols=93 Identities=30% Similarity=0.449 Sum_probs=70.3
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhH-HHHHHHhcCCeEEEEec
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED-GKDMATAYDCKFIETSV 83 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~-~~~~~~~~~~~~~e~SA 83 (167)
..+++.+|++|+|||++++.+++....|+..........++|+++|+||+|+.......... ........+.+++++|+
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 142 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSA 142 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEec
Confidence 45788999999999999999999888873333223344689999999999987543322222 33344455779999999
Q ss_pred CCCCCHHHHHHHHH
Q psy15004 84 GINHNVDELLVGIL 97 (167)
Q Consensus 84 ~~~~~v~~lf~~l~ 97 (167)
.++.|+++++++|.
T Consensus 143 ~~~~~i~~~~~~l~ 156 (157)
T cd00882 143 KTGENVEELFEELA 156 (157)
T ss_pred CCCCChHHHHHHHh
Confidence 99999999999875
No 144
>KOG0070|consensus
Probab=99.33 E-value=9.6e-12 Score=90.66 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=79.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---cChhHHHHHHHhcCCeE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---VTDEDGKDMATAYDCKF 78 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~ 78 (167)
..+..||.+++++|||.|.+|++.+.+++..+..+.......+.|+++.+||.|+++.-. ++...+..-.....+.+
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~i 155 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHI 155 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEE
Confidence 468899999999999999999999999988887776665567899999999999975432 22222222222345678
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
..|+|.+|+|+.|.++++...+..
T Consensus 156 q~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 156 QSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred eeccccccccHHHHHHHHHHHHhc
Confidence 899999999999999999998764
No 145
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.33 E-value=1.3e-11 Score=88.50 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=59.8
Q ss_pred hhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHHHHHh---cC
Q psy15004 4 CIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKDMATA---YD 75 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~~~~~---~~ 75 (167)
...++.++|++|+|||+++ +.+++.+. .+... ...|+++|+||+|+..... ...++....... .+
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLAD 140 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCC
Confidence 4567889999999999987 44444332 22111 1248999999999975321 112233333333 35
Q ss_pred CeEEEEecCCCCCHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
.+++++||+++.|++++|+.+..
T Consensus 141 ~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 141 APIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEEEEeCCCCcCHHHHHHHHhh
Confidence 78999999999999999988754
No 146
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.31 E-value=8.9e-12 Score=104.74 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=67.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHH-HHHHhcCCeEEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGK-DMATAYDCKFIET 81 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~-~~~~~~~~~~~e~ 81 (167)
..++++||++|+|||+++..+++++. ++..+.. .++|+|+|+||+||.+... ....+.. .+.....++++++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 34678999999999999988888764 5555533 3689999999999964221 1111111 1222234689999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
||++|.||+++|+.+.+.+...
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998877543
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.30 E-value=9.5e-12 Score=100.90 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=65.8
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
..++.+||++|+|||++++.+++.+..|...+... ...++|+++|+||+|+.+...+ ..+. ....+++++||+
T Consensus 263 le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAk 335 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAK 335 (351)
T ss_pred HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEcc
Confidence 34588999999999999998888877666655443 2347899999999999643221 1111 122468999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy15004 85 INHNVDELLVGILTQ 99 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~ 99 (167)
+|.|++++++.|...
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999988764
No 148
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.30 E-value=1.3e-11 Score=102.93 Aligned_cols=89 Identities=17% Similarity=0.041 Sum_probs=71.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+++.. |+..+.. .++|+|+|+||+|+... ....++..++.+++++|
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vS 342 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLS 342 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEE
Confidence 356799999999999999998888765 7776632 36799999999999642 22345666778899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++ .||+++|+.|.+.+....
T Consensus 343 ak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHHHh
Confidence 998 699999999999887654
No 149
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=4e-11 Score=99.23 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=73.4
Q ss_pred ccCCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 7 NYETPHGFIIVYSTIDL---ASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~---~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+++.++++|+|+|+++. +++++...|..++..... ..+.|+|+|+||+||... .+....+.+.++.+++++|
T Consensus 233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iS 308 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPIS 308 (424)
T ss_pred HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEe
Confidence 35569999999999864 678888888888865422 247899999999998432 2345566666678899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|+++.|++++++.|.+.+...
T Consensus 309 A~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 309 ALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
No 150
>KOG0076|consensus
Probab=99.27 E-value=6e-12 Score=90.96 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=80.7
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHH---HH---hcC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDM---AT---AYD 75 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~---~~---~~~ 75 (167)
+++.-||..++++|+|+|.++++.|+....-++.+.......++|+++.+||.|+.+...+. +.... +. ...
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~--El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAA--ELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHH--HHHHHhhhhhhcCCcc
Confidence 57888999999999999999999999888777777666566789999999999997654322 22211 22 234
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++|.++||.+|+||++...|++..+...
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 6899999999999999999999988765
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.26 E-value=2.7e-11 Score=94.89 Aligned_cols=92 Identities=16% Similarity=-0.005 Sum_probs=67.8
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEe
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETS 82 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 82 (167)
+..+++++|++++|+|+++..+++ ..++..+.. .+.|+++|+||+|+.+.... .+....++...++ +++++|
T Consensus 73 ~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iS 145 (270)
T TIGR00436 73 ARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPIS 145 (270)
T ss_pred HHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEe
Confidence 456789999999999999876664 344555533 36899999999999643222 2334444444454 799999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++++.|.+.+..
T Consensus 146 A~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 146 ALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred cCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999887643
No 152
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.26 E-value=9.1e-11 Score=88.49 Aligned_cols=102 Identities=25% Similarity=0.247 Sum_probs=77.3
Q ss_pred hhhhcccCCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc------------ccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTID-LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR------------VVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~-~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~ 68 (167)
+++..||.+++++++|||.++ ..+++....|..++.... ....|+++||||+|+.... .+..+...
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLA 147 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhH
Confidence 457889999999999999999 556666788999987653 2468999999999998653 22222222
Q ss_pred HHHHhc---CCeEEEEecC--CCCCHHHHHHHHHHHHHhhh
Q psy15004 69 DMATAY---DCKFIETSVG--INHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 69 ~~~~~~---~~~~~e~SA~--~~~~v~~lf~~l~~~i~~~~ 104 (167)
...... ...++++||+ ++.+|+++|..++..+....
T Consensus 148 ~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 148 PKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred hHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 222222 3359999999 99999999999999887543
No 153
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.24 E-value=3.6e-11 Score=85.43 Aligned_cols=86 Identities=21% Similarity=0.142 Sum_probs=61.7
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEec
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSV 83 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA 83 (167)
..+++++|++|+|+|..+..++... .+...+.. .+.|+++|+||+|+...... .......++ .++++||
T Consensus 71 ~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa 140 (157)
T cd01894 71 ELAIEEADVILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISA 140 (157)
T ss_pred HHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEec
Confidence 4578899999999999875544432 22233322 25899999999999754322 222334566 7899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15004 84 GINHNVDELLVGILTQI 100 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i 100 (167)
+++.|++++|++|++++
T Consensus 141 ~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 141 EHGRGIGDLLDAILELL 157 (157)
T ss_pred ccCCCHHHHHHHHHhhC
Confidence 99999999999998753
No 154
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.24 E-value=3.5e-11 Score=89.42 Aligned_cols=92 Identities=20% Similarity=0.101 Sum_probs=64.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHH-----HhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA-----TAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~ 76 (167)
.+...|++++|++|+|+|++++.. .|...+... ..+.|+++|+||+|+.... ...+....+. ...+.
T Consensus 26 ~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 26 NLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCC
Confidence 356789999999999999987531 133333222 2468999999999996432 2223333333 22333
Q ss_pred ---eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 77 ---KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 77 ---~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
.++++||++|.|++++++.|.+.+.
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988764
No 155
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.23 E-value=2.5e-11 Score=101.39 Aligned_cols=84 Identities=20% Similarity=0.129 Sum_probs=66.7
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
+..+++++|++|+|||++++.++++...|.. ..+.|+++|+||+|+.+...+. ...+.+++++||
T Consensus 288 ~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSA 352 (449)
T PRK05291 288 SREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISA 352 (449)
T ss_pred HHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEe
Confidence 5568999999999999999888876554433 2468999999999996533221 334568999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15004 84 GINHNVDELLVGILTQIRL 102 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~ 102 (167)
++|.|++++++.|.+.+..
T Consensus 353 ktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 353 KTGEGIDELREAIKELAFG 371 (449)
T ss_pred eCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998754
No 156
>PRK12289 GTPase RsgA; Reviewed
Probab=99.22 E-value=5.7e-11 Score=96.26 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=68.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+.+.++.++|.+++|+|++++. ++..+..|+..+.. .++|+|||+||+||.+.... +........+|+.++.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 3455789999999999999875 45566778776632 47899999999999643221 11122334678899999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQI 100 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i 100 (167)
||+++.|++++++.|...+
T Consensus 156 SA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 156 SVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EcCCCCCHHHHhhhhccce
Confidence 9999999999999887654
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.22 E-value=9.9e-11 Score=97.08 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=66.1
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh----cCCeEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA----YDCKFIE 80 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~----~~~~~~e 80 (167)
..+++.||++|+|+|+++..+.++.. ++..+.. .+.|+|+|+||+|+.+......+....+... .++++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 45789999999999999887776643 4444433 3689999999999972211111111122222 2468999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhh
Q psy15004 81 TSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+||++|.|++++|+++.+.+...
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998876543
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.22 E-value=4.5e-11 Score=100.50 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=65.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..|+++||++|+|||+++..++.. ..|...+.. .++|+|+|+||+|+.... .+....+...++ .++++|
T Consensus 110 ~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iS 180 (472)
T PRK03003 110 QAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVS 180 (472)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEE
Confidence 35668999999999999998766543 345555532 368999999999986421 122222222223 457999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|+.|+..+..
T Consensus 181 A~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred cCCCCCcHHHHHHHHhhccc
Confidence 99999999999999988754
No 159
>PRK04213 GTP-binding protein; Provisional
Probab=99.22 E-value=1.6e-11 Score=91.73 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCC---------eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC---------KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---------~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
.++|+++|+||+|+.+.. .+....++..+++ +++++||++| ||+++|++|++.+.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 378999999999996433 2345556665554 4899999999 99999999998764
No 160
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=6.3e-11 Score=99.54 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=71.8
Q ss_pred hcccCCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhC----------CCCCceEEEEEecCCCCCccccChhHHHHH
Q psy15004 5 IANYETPHGFIIVYSTID----LASFHVAEQCLQALWKKD----------SIRSKAVILVANKTDLVRCRVVTDEDGKDM 70 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~----~~s~~~~~~~~~~l~~~~----------~~~~~piilvgNK~Dl~~~~~v~~~~~~~~ 70 (167)
..+++.+|++|+|+|+++ ++.++++..|..+|..+. .....|+|+|+||+|+.+...+. +.....
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~ 309 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPE 309 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHH
Confidence 346788999999999985 346666666666665432 12468999999999997543322 222223
Q ss_pred HHhcCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 71 ATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 71 ~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
....+++++++||+++.|+++++.+|.+.+....
T Consensus 310 l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 310 LEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 3445789999999999999999999998886643
No 161
>PRK11058 GTPase HflX; Provisional
Probab=99.21 E-value=1.3e-10 Score=96.52 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=67.0
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCe-EEEEe
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCK-FIETS 82 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~S 82 (167)
+..++++||++|+|+|++++.+++.+..|...+... ...++|+++|+||+|+..... .... ....+.+ ++++|
T Consensus 270 tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~IS 343 (426)
T PRK11058 270 TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLS 343 (426)
T ss_pred HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEe
Confidence 345678999999999999998888775554444332 224689999999999864211 0111 1123454 58899
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++++.|...+..
T Consensus 344 AktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999998854
No 162
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.20 E-value=7.3e-11 Score=87.88 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=57.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc-cChhHHHHHHH-------hc
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV-VTDEDGKDMAT-------AY 74 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~-v~~~~~~~~~~-------~~ 74 (167)
+...||+++|++|+|||+++. .+.....|+..+.. .++|+++|+||+|+.+... ...++...+.. ..
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence 456789999999999999873 23333445554432 3689999999999964332 11233444432 23
Q ss_pred CCeEEEEecCCCCCHHHH
Q psy15004 75 DCKFIETSVGINHNVDEL 92 (167)
Q Consensus 75 ~~~~~e~SA~~~~~v~~l 92 (167)
+++++++||++|.|+++.
T Consensus 156 ~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 156 DFPVLYASAKNGWASLNL 173 (194)
T ss_pred ccCEEEeehhcccccccc
Confidence 678999999999877443
No 163
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.19 E-value=9.5e-11 Score=83.17 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=64.2
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
...++..+|++++|+|++++.+..+...|.. ..+.|+++|+||+|+.+.... .....+.+++++||
T Consensus 74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa 139 (157)
T cd04164 74 AREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISA 139 (157)
T ss_pred HHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEEC
Confidence 3456789999999999998877776544322 246899999999998754332 33445678999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15004 84 GINHNVDELLVGILTQI 100 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i 100 (167)
+++.|+++++++|...+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999988754
No 164
>KOG0096|consensus
Probab=99.19 E-value=1.7e-11 Score=89.74 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=78.5
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
.-||-++.++|++||++..-++.++..|..++.+.. .++||+++|||.|..... + ......+-...++.|+++||+
T Consensus 77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSak 152 (216)
T KOG0096|consen 77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAK 152 (216)
T ss_pred cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-c-ccccceeeecccceeEEeecc
Confidence 457888999999999999999999999999997664 579999999999986533 2 223334555668899999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15004 85 INHNVDELLVGILTQIRLK 103 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i~~~ 103 (167)
.+.|.+.-|.++++.+...
T Consensus 153 sn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 153 SNYNFERPFLWLARKLTGD 171 (216)
T ss_pred cccccccchHHHhhhhcCC
Confidence 9999999999999988653
No 165
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.18 E-value=1.2e-10 Score=92.07 Aligned_cols=86 Identities=19% Similarity=0.091 Sum_probs=68.2
Q ss_pred ccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 7 NYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
.+.++|.+|+|+|++++. ++..+..|+..+.. .++|+++|+||+||.+... ......+....+++++.+||++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 478899999999999987 88888889887754 3689999999999965321 1122333445788999999999
Q ss_pred CCCHHHHHHHHHH
Q psy15004 86 NHNVDELLVGILT 98 (167)
Q Consensus 86 ~~~v~~lf~~l~~ 98 (167)
+.|+++++..|..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999988775
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.17 E-value=1.6e-10 Score=93.38 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=64.4
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC--CeEEEEe
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD--CKFIETS 82 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~S 82 (167)
.++.+||++|+|+|.++ +|+.+. .|+..+... +.|+|+|+||+|+.+. ...+...++...+ ..++++|
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEe
Confidence 45789999999999765 565554 355555432 4577889999998643 1334455554443 5799999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|...+..
T Consensus 198 Aktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 198 ALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCccCHHHHHHHHHHhCCC
Confidence 99999999999999887754
No 167
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.16 E-value=2.2e-10 Score=80.54 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=68.9
Q ss_pred hhcccCCCcEEEEEEeCCCH-HHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDL-ASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~-~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
...++++++++++++|++.. .++.... .|...+...... +.|+++|+||+|+.... +.......+......+++++
T Consensus 67 ~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 144 (161)
T TIGR00231 67 RRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPL 144 (161)
T ss_pred HHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEe
Confidence 45568889999999999887 7777765 677777655322 78999999999997543 33333444444445689999
Q ss_pred ecCCCCCHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGI 96 (167)
Q Consensus 82 SA~~~~~v~~lf~~l 96 (167)
||++|.|++++|+.|
T Consensus 145 sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 145 SAETGKNIDSAFKIV 159 (161)
T ss_pred ecCCCCCHHHHHHHh
Confidence 999999999999876
No 168
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.16 E-value=1.6e-10 Score=99.61 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=70.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC---eEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC---KFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---~~~ 79 (167)
....|++.||++|+|||+++..+++....|...+. .++|+|+|+||+|+.+.. ..+...+++..+++ .++
T Consensus 86 ~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi 158 (595)
T TIGR01393 86 EVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAI 158 (595)
T ss_pred HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEE
Confidence 45678999999999999998777777666755442 267999999999986422 12233455555665 489
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++||++|.||+++|+.|++.+..
T Consensus 159 ~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 159 LASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EeeccCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999987754
No 169
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.16 E-value=9.7e-11 Score=84.28 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=64.3
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
++...+.+++|++|+|+|++++....+ ..+...+. ..+.|+++|+||+|+.+.... .....+....+.+++.+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 466778889999999999987643332 12222221 135799999999998542211 11112333456789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~ 101 (167)
||+++.|++++++.+.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999987765
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.15 E-value=3.1e-10 Score=81.63 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=62.4
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhH-HHHHHHhc----CCeEEE
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED-GKDMATAY----DCKFIE 80 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~-~~~~~~~~----~~~~~e 80 (167)
.++.++|++|+|+|.+++.++... .++..+.. .+.|+++|+||+|+.+......++ ...+...+ +.++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 467899999999999988776553 34444322 257999999999997643222222 22233333 368999
Q ss_pred EecCCCCCHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILT 98 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~ 98 (167)
+||+++.|++++++.+.+
T Consensus 155 ~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 155 ISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EeccCCCCHHHHHHHHHH
Confidence 999999999999998875
No 171
>PRK00098 GTPase RsgA; Reviewed
Probab=99.14 E-value=1.9e-10 Score=91.48 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=66.3
Q ss_pred ccCCCcEEEEEEeCCCHHHHHH-HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHV-AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~-~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
...++|++|+|+|+++++++.. +..|+..+.. .++|+++|+||+||.+.... ..........++++++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999998876554 4778777643 37899999999999633221 1223344556788999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy15004 86 NHNVDELLVGILTQ 99 (167)
Q Consensus 86 ~~~v~~lf~~l~~~ 99 (167)
+.|++++++.+...
T Consensus 152 g~gi~~L~~~l~gk 165 (298)
T PRK00098 152 GEGLDELKPLLAGK 165 (298)
T ss_pred CccHHHHHhhccCc
Confidence 99999999887543
No 172
>KOG0072|consensus
Probab=99.14 E-value=1.5e-10 Score=81.49 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=70.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---cChhHHHHHHHhcCCeEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---VTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~~ 79 (167)
.++-||.+.|++|+|.|.+|.+........+-.+.+.....+..+++++||.|...... +....+..-.+..-+.++
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv 157 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIV 157 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEE
Confidence 46789999999999999999877665544333333333445678999999999864221 111111111223346899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++||.+|+|+++.++||.+.+.+
T Consensus 158 ~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 158 KTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eeccccccCCcHHHHHHHHHHhc
Confidence 99999999999999999998764
No 173
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.13 E-value=4.1e-10 Score=81.10 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=60.3
Q ss_pred hhhcccCCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC-hhHHHHHHH----h-
Q psy15004 3 ECIANYETPHGFIIVYSTIDL---ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT-DEDGKDMAT----A- 73 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~---~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~~~~----~- 73 (167)
++..++..+|++|+|+|+++. .+++.+ ..+.. .++|+++|+||+|+....... .+....+.. .
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~----~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 137 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAI----KLAKA----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEW 137 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHH----HHHHH----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccc
Confidence 355678899999999999873 333322 22322 368999999999986432100 011111111 1
Q ss_pred -cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 74 -YDCKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 74 -~~~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
.+++++++||++|.|++++|++|.+...
T Consensus 138 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 138 GGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 1358999999999999999999987643
No 174
>PRK12288 GTPase RsgA; Reviewed
Probab=99.11 E-value=3.7e-10 Score=91.42 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=67.6
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc-ChhHHHHHHHhcCCeEEEEecCCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV-TDEDGKDMATAYDCKFIETSVGINH 87 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v-~~~~~~~~~~~~~~~~~e~SA~~~~ 87 (167)
.++|.+++||+++...+|..+..|+..+.. .++|+++|+||+||.+.... ............+++++++||+++.
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 459999999999988899999999876632 36899999999999653211 1122223344568899999999999
Q ss_pred CHHHHHHHHHHHH
Q psy15004 88 NVDELLVGILTQI 100 (167)
Q Consensus 88 ~v~~lf~~l~~~i 100 (167)
|++++++.|...+
T Consensus 195 GideL~~~L~~ki 207 (347)
T PRK12288 195 GLEELEAALTGRI 207 (347)
T ss_pred CHHHHHHHHhhCC
Confidence 9999999887644
No 175
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.11 E-value=3.3e-10 Score=79.67 Aligned_cols=91 Identities=21% Similarity=0.131 Sum_probs=65.7
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChh---HHHHHHHhcCCeEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE---DGKDMATAYDCKFIE 80 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~---~~~~~~~~~~~~~~e 80 (167)
...++..+|++++|+|.++..+..... |...... .+.|+++|+||+|+......... .........+.++++
T Consensus 69 ~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd00880 69 ARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIA 143 (163)
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEE
Confidence 445789999999999999977666544 4444422 47899999999998754332211 112222334678999
Q ss_pred EecCCCCCHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~ 99 (167)
+||+++.|++++++.+.+.
T Consensus 144 ~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 VSALTGEGIDELREALIEA 162 (163)
T ss_pred EeeeccCCHHHHHHHHHhh
Confidence 9999999999999998875
No 176
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.11 E-value=4.1e-10 Score=82.44 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=65.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC--hhHHHHHHHh-------
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT--DEDGKDMATA------- 73 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~~~~------- 73 (167)
.+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+....... .++.......
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 45678889999999999987654443 334444432 378999999999997522211 1223333322
Q ss_pred -------cCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 74 -------YDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 74 -------~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
...+++++||++|.|++++|..|.+.+
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346899999999999999999998875
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.11 E-value=3.6e-10 Score=84.96 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=59.2
Q ss_pred hcccCCCcEEEEEEeCCCH----HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhc---C
Q psy15004 5 IANYETPHGFIIVYSTIDL----ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAY---D 75 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~----~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~---~ 75 (167)
...+.++|++|+|+|++++ .+++.+..| ... ...|+|+|+||+|+.+.... ..++...+...+ +
T Consensus 101 ~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~ 173 (203)
T cd01888 101 LSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM---GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAEN 173 (203)
T ss_pred HHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc---CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCC
Confidence 3445678999999999873 333333222 211 12479999999999753221 112333333332 5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++++++||++|.|++++|+.|.+.+.
T Consensus 174 ~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 174 APIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999999987553
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.10 E-value=3.5e-10 Score=97.38 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=67.0
Q ss_pred hccc--CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 5 IANY--ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 5 ~~y~--~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
..|+ +++|++++|+|.++.+ ....+..++.+ .++|+++|+||+|+.+...+. .+.+.+.+..+++++++|
T Consensus 65 ~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tS 136 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTS 136 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEE
Confidence 4454 3799999999998742 22334444433 368999999999986544443 356778888899999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.|++++|+.+.+..
T Consensus 137 A~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 137 ATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 179
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.09 E-value=8.1e-10 Score=90.78 Aligned_cols=97 Identities=21% Similarity=0.156 Sum_probs=72.9
Q ss_pred cccCCCcEEEEEEeCC---CHHHHHHHHHHHHHHHhhC-CCCCceEEEEEecCCCCCccccChhHHHHHHHhcC--CeEE
Q psy15004 6 ANYETPHGFIIVYSTI---DLASFHVAEQCLQALWKKD-SIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD--CKFI 79 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t---~~~s~~~~~~~~~~l~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~--~~~~ 79 (167)
.+++.+|++|+|+|++ +.+.+++...|+.++.... ...+.|+|+|+||+|+.....+ .+....+.+.++ .+++
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi 311 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVY 311 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEE
Confidence 4578899999999998 5567888888888886542 1236899999999999654332 233444555444 3789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.+||+++.|++++++.|.+.+...
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHhhhC
Confidence 999999999999999999887653
No 180
>KOG1673|consensus
Probab=99.08 E-value=9.5e-10 Score=78.42 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=79.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC----c-cccChhHHHHHHHhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR----C-RVVTDEDGKDMATAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~----~-~~v~~~~~~~~~~~~~~~ 77 (167)
|.+....++-++||+||+|.+.++..+..|+.+.+.. +...+| |+||+|.|+-- + ......+++.+|+-.+++
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~-NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs 162 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGL-NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS 162 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhcc-CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 5567788999999999999999999999999998665 233444 67899999631 1 111234677788889999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.+.||+....||..+|.-++..+..
T Consensus 163 L~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 163 LFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred EEEeeccccccHHHHHHHHHHHHhC
Confidence 9999999999999999999888875
No 181
>PRK00089 era GTPase Era; Reviewed
Probab=99.05 E-value=1.1e-09 Score=86.60 Aligned_cols=93 Identities=23% Similarity=0.183 Sum_probs=65.6
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHH-HHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC-CeEEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQC-LQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD-CKFIET 81 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~-~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~ 81 (167)
+..++.++|++++|+|+++. +.....+ +..+. ..+.|+++|+||+|+.............+...++ ..++++
T Consensus 78 ~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~i 151 (292)
T PRK00089 78 AWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPI 151 (292)
T ss_pred HHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 34567899999999999882 2222223 33332 1368999999999997433323344455555444 589999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||+++.|++++++.|...+..
T Consensus 152 SA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999887754
No 182
>KOG0071|consensus
Probab=99.04 E-value=4.7e-10 Score=78.68 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=78.0
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHH-----HhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA-----TAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~ 76 (167)
-.++.||.+..++|||.|..+.+..+++.+.+..+.......+.|+++.+||.|+.+.. ++.+...+. +...+
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNW 153 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCcc
Confidence 46889999999999999999999999888777777666667789999999999998644 334444332 23346
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 77 KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.+.++||.+|.|+.|-|.+|...+
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 154 YVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred EeeccccccchhHHHHHHHHHhhc
Confidence 788999999999999999988754
No 183
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.02 E-value=1.2e-09 Score=88.98 Aligned_cols=90 Identities=22% Similarity=0.193 Sum_probs=65.3
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH----HHHhcCC-
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD----MATAYDC- 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~----~~~~~~~- 76 (167)
++...|++.++++++|+|+.|.. ..|..++.+.. .+.|+++|+||+||.. +.+..+.... +++..++
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCC
Confidence 35667889999999999997743 23555554432 3679999999999965 2333333333 3556676
Q ss_pred --eEEEEecCCCCCHHHHHHHHHHH
Q psy15004 77 --KFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 77 --~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
.++++||++|.|++++|..|.+.
T Consensus 127 ~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 48999999999999999988654
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.00 E-value=1.8e-09 Score=76.83 Aligned_cols=90 Identities=24% Similarity=0.152 Sum_probs=62.6
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC-CeEEEEec
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD-CKFIETSV 83 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA 83 (167)
..++..+|++++|+|++++.+.. ...+...+... +.|+++|+||+|+........+....+....+ .+++++|+
T Consensus 77 ~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~----~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 77 WSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS----KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred HHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh----CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence 45688899999999999862211 12233444322 57999999999997433322333444444443 58999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy15004 84 GINHNVDELLVGILTQ 99 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~ 99 (167)
+++.|++++|+.|.+.
T Consensus 152 ~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGENVDELLEEIVKY 167 (168)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999998764
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.00 E-value=2.5e-09 Score=92.27 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=68.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC---eEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC---KFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---~~~ 79 (167)
....+++.+|++|+|+|+++....+....|.... . .++|+|+|+||+|+..... .....++...+++ .++
T Consensus 90 ~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~vi 162 (600)
T PRK05433 90 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASDAV 162 (600)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcceEE
Confidence 3567899999999999999865566655665433 1 3689999999999864221 2223344444555 389
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++||++|.|++++++.|++.+...
T Consensus 163 ~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 163 LVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EEecCCCCCHHHHHHHHHHhCccc
Confidence 999999999999999999877543
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.99 E-value=2.5e-09 Score=92.02 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=66.6
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCcccc--ChhHHHHHHHhc--
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVV--TDEDGKDMATAY-- 74 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v--~~~~~~~~~~~~-- 74 (167)
+...++.++|++|+|+|+++ +.+++.+. + +.. .++| +|+|+||+|+.+...+ ..++...+...+
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-i---l~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~ 137 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLA-V---LDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF 137 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHH-H---HHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 34567889999999999988 55655442 2 221 2567 9999999999764432 123445555544
Q ss_pred --CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 75 --DCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 75 --~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+++++++||++|.|+++++..|...+..
T Consensus 138 ~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 138 LKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 4789999999999999999988776654
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.98 E-value=2.7e-09 Score=88.77 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=64.7
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh----cCCeEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA----YDCKFIE 80 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~----~~~~~~e 80 (167)
..+++.+|++|+|+|+++..+.++.. ++..+.. .+.|+|+|+||+|+.+.... .+....+... ..+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence 45788999999999999877766543 4444433 26799999999999743211 1111122222 2468999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+||++|.|++++|+.+.+....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 188
>KOG1707|consensus
Probab=98.97 E-value=5.6e-10 Score=93.70 Aligned_cols=96 Identities=22% Similarity=0.163 Sum_probs=73.4
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhH-HHHHHHhcC-C-eEEEE
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDED-GKDMATAYD-C-KFIET 81 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~-~~~~~~~~~-~-~~~e~ 81 (167)
=++.||++.+||+++++++++.+ ..|+..+++..+ ..++||||||||+|+......+.+. ...+..++. + ..++|
T Consensus 76 EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhh
Confidence 36789999999999999999998 669999976532 2579999999999997654432232 333444432 2 57999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||++..++.|+|...-+.+..
T Consensus 156 SA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred hhhhhhhhHhhhhhhhheeec
Confidence 999999999999877766654
No 189
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.97 E-value=3.3e-09 Score=78.81 Aligned_cols=89 Identities=20% Similarity=0.093 Sum_probs=58.8
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHH-HHH------hcCCeEE
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKD-MAT------AYDCKFI 79 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~-~~~------~~~~~~~ 79 (167)
..+|++++|+|.++.........|.. . .. .+.|+++|+||+|+..... ...++... +.. ..+++++
T Consensus 90 ~~~d~vi~VvD~~~~~~~~~~~~~~~-~-~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 90 QIIDLMLLVVDATKGIQTQTAECLVI-G-EI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred hhCCEEEEEEECCCCccHHHHHHHHH-H-HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 46789999999987443333333321 1 11 2569999999999864221 11122222 111 1356899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++||++|.|++++++.|..+|..
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred EEeccCCCCHHHHHHHHHhcccc
Confidence 99999999999999999998864
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.97 E-value=4.1e-09 Score=92.74 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=65.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH-HHHHhc----CCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK-DMATAY----DCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~~~~----~~~~~ 79 (167)
..+++.+|++|+|+|+++..++++.. ++..+.. .++|+|+|+||+|+.+... .+... .+...+ ..+.+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence 34578999999999999988888765 4444433 3689999999999964321 11111 121221 24679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++||++|.||+++|+.+.+.+...
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877653
No 191
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.96 E-value=1.2e-09 Score=78.84 Aligned_cols=85 Identities=21% Similarity=0.222 Sum_probs=62.7
Q ss_pred hhccc--CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 4 CIANY--ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 4 ~~~y~--~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+..|+ +..|++|+|.|.+..+ .-.....++.+. ++|+|+|.||+|+.....+.. ....+.+.+|++++.+
T Consensus 70 ~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~ 141 (156)
T PF02421_consen 70 ARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPV 141 (156)
T ss_dssp HHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEE
T ss_pred HHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEE
Confidence 34444 6899999999998743 223345555444 689999999999875444332 4567788899999999
Q ss_pred ecCCCCCHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGI 96 (167)
Q Consensus 82 SA~~~~~v~~lf~~l 96 (167)
||+++.|++++++.|
T Consensus 142 sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 142 SARTGEGIDELKDAI 156 (156)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred EeCCCcCHHHHHhhC
Confidence 999999999998764
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.96 E-value=3.9e-09 Score=87.82 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=60.3
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFH--VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIE 80 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~--~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e 80 (167)
+..+++++|++|+|+|.++..+.. .+..|+... +.|+++|+||+|+.+. .+....+ ..+++ .+++
T Consensus 74 ~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-------~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~ 141 (435)
T PRK00093 74 AELAIEEADVILFVVDGRAGLTPADEEIAKILRKS-------NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYP 141 (435)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-------CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEE
Confidence 456789999999999998753332 233343322 6899999999997531 1222222 34566 4899
Q ss_pred EecCCCCCHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~ 99 (167)
+||++|.|++++|+.++..
T Consensus 142 iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 142 ISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EEeeCCCCHHHHHHHHHhh
Confidence 9999999999999999873
No 193
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.90 E-value=7.9e-09 Score=85.74 Aligned_cols=90 Identities=22% Similarity=0.154 Sum_probs=64.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
.+..++++||++|+|+|.++..+..+ ..+...+.+ .+.|+++|+||+|+..... .... ...+++ +++++
T Consensus 71 ~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~----~~~~-~~~lg~~~~~~v 140 (429)
T TIGR03594 71 QAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDA----VAAE-FYSLGFGEPIPI 140 (429)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCcccc----cHHH-HHhcCCCCeEEE
Confidence 46678899999999999987543332 122233322 2679999999999864332 1122 345676 79999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||+.|.|++++++.+...+..
T Consensus 141 Sa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 141 SAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred eCCcCCChHHHHHHHHHhcCc
Confidence 999999999999999887643
No 194
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.90 E-value=2.1e-09 Score=73.42 Aligned_cols=48 Identities=29% Similarity=0.402 Sum_probs=38.1
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHH---HHHHHHhhCCCCCceEEEEEecCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQ---CLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~---~~~~l~~~~~~~~~piilvgNK~D 55 (167)
.++.++|++|+|||++++.||+.+.+ |+..+... ..++|+|+||||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 34788999999999999999998744 56666443 34699999999998
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.89 E-value=8e-09 Score=90.94 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=62.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
.+..|+++||++|+|+|.++.-+..+ ..|...+.. .++|+|+|+||+|+.... .....+. ..++ ..+++
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~i 416 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPI 416 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEE
Confidence 34568899999999999986322111 245555533 378999999999985421 1112221 2233 45789
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||++|.||+++|++|+..+..
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ECCCCCCchHHHHHHHHhccc
Confidence 999999999999999988754
No 196
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.84 E-value=3.2e-08 Score=76.01 Aligned_cols=50 Identities=26% Similarity=0.212 Sum_probs=39.5
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
-+|+++|+||+|+.. .+++..++.. ..++++||++|.|++++|+.+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 369999999999853 3444455543 4689999999999999999998765
No 197
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.84 E-value=2.5e-08 Score=73.80 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=60.0
Q ss_pred hcccCCC---cEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhcCCeEE
Q psy15004 5 IANYETP---HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAYDCKFI 79 (167)
Q Consensus 5 ~~y~~~a---d~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~~~~~ 79 (167)
..|++.+ +++++|+|.+++.+.... .+...+. . .++|+++++||+|+.+..+. ..+............++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 4556544 678889998875443321 1222222 1 26899999999998653322 12223334443467899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++||+++.|++++|+.|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999887664
No 198
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.83 E-value=3e-08 Score=73.50 Aligned_cols=92 Identities=23% Similarity=0.275 Sum_probs=59.7
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHHHHHhc------CC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKDMATAY------DC 76 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~~~~~~------~~ 76 (167)
......+|++|+|+|..+....+. ...+..+... ++|+|+|.||+|+...+. +..+....+.+.. .+
T Consensus 88 ~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~----~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (188)
T PF00009_consen 88 IRGLRQADIAILVVDANDGIQPQT-EEHLKILREL----GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIV 162 (188)
T ss_dssp HHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT----T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTE
T ss_pred cceecccccceeeeeccccccccc-cccccccccc----ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccc
Confidence 344678999999999986433222 3334444333 688999999999972111 1111111333333 24
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+++++||++|.|++++++.|.+.+.
T Consensus 163 ~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 163 PVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCc
Confidence 7999999999999999999988753
No 199
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.81 E-value=3.1e-08 Score=85.27 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=59.4
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH-------
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT------- 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~------- 72 (167)
+...++..+|++|+|||+++ +.+++.+ .... ..++|+|+++||+|+.+. ..++......
T Consensus 151 ~r~rga~~aDiaILVVda~dgv~~qT~e~i----~~~~----~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~ 219 (587)
T TIGR00487 151 MRARGAKVTDIVVLVVAADDGVMPQTIEAI----SHAK----AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPE 219 (587)
T ss_pred HHHhhhccCCEEEEEEECCCCCCHhHHHHH----HHHH----HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHH
Confidence 45567899999999999987 3344322 2221 236899999999998642 1222222222
Q ss_pred hcC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 73 AYD--CKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 73 ~~~--~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
.++ .+++++||++|.|++++|+.+..+
T Consensus 220 ~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 220 DWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred hcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 222 479999999999999999998753
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.79 E-value=1.2e-08 Score=84.95 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=56.5
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHH--HHHhhCCCCCceEEEEEecCCCCCccc----cChhHHHHHHHhcC---
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQ--ALWKKDSIRSKAVILVANKTDLVRCRV----VTDEDGKDMATAYD--- 75 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~--~l~~~~~~~~~piilvgNK~Dl~~~~~----v~~~~~~~~~~~~~--- 75 (167)
..++.++|++|+|+|+++.+++.. ..+.. .+... ....|+|+|+||+|+.+... ...++...+++..+
T Consensus 103 ~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~ 179 (426)
T TIGR00483 103 ITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLART--LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNP 179 (426)
T ss_pred HhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCc
Confidence 345688999999999998754321 11211 12111 12357999999999964211 11345555666555
Q ss_pred --CeEEEEecCCCCCHHHHHH
Q psy15004 76 --CKFIETSVGINHNVDELLV 94 (167)
Q Consensus 76 --~~~~e~SA~~~~~v~~lf~ 94 (167)
++|+++||++|.|+++++.
T Consensus 180 ~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 180 DTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred ccceEEEeecccccccccccc
Confidence 5799999999999987553
No 201
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.78 E-value=3.1e-08 Score=71.41 Aligned_cols=92 Identities=20% Similarity=0.128 Sum_probs=58.1
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
.-++++|.+++|.|+.++..-. ...+...+.. ...+.|+|+|.||+|+.+...+ ......+.+.+....+.+||+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK--EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh--ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4578999999999998863221 1222222321 1235899999999999643221 1122223232333357899999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15004 86 NHNVDELLVGILTQIR 101 (167)
Q Consensus 86 ~~~v~~lf~~l~~~i~ 101 (167)
+.|++++.+.+.....
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999988876543
No 202
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=4.1e-08 Score=70.62 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=56.6
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHH-HHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHH
Q psy15004 12 HGFIIVYSTIDLASFHVAEQCLQ-ALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVD 90 (167)
Q Consensus 12 d~~i~v~d~t~~~s~~~~~~~~~-~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~ 90 (167)
|.+|+|+|+.++.+.+. .|+. ... ...++|+|+|.||+|+.....+ .+....+....+..++.+||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~---~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLI---KEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHH---hcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence 78999999988765542 2443 121 1246899999999999643211 111122333345678999999999999
Q ss_pred HHHHHHHHHHH
Q psy15004 91 ELLVGILTQIR 101 (167)
Q Consensus 91 ~lf~~l~~~i~ 101 (167)
++++.+.+...
T Consensus 75 ~L~~~i~~~~~ 85 (155)
T cd01849 75 KKESAFTKQTN 85 (155)
T ss_pred hHHHHHHHHhH
Confidence 99999887654
No 203
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.77 E-value=4.3e-08 Score=86.05 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH-H------HH
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD-M------AT 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-~------~~ 72 (167)
++..++..+|++|+|+|+++ +.+++.+. .+. ..++|+|+|+||+|+.... .++... + ..
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k----~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e 379 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQ----AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPE 379 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHH----hcCceEEEEEECCCccccC---HHHHHHHHHHhccchH
Confidence 56678999999999999987 34444332 221 2368999999999986422 111111 1 22
Q ss_pred hcC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 73 AYD--CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 73 ~~~--~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.++ ++++++||++|.|++++|+.|....
T Consensus 380 ~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 333 6899999999999999999988754
No 204
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.76 E-value=3.9e-08 Score=86.92 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=60.7
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc--ccChh--HHHHHHHhcC
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR--VVTDE--DGKDMATAYD 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~--~v~~~--~~~~~~~~~~ 75 (167)
+...++..+|++|+|||+++ +.+++.+. .+. ..++|+|+|+||+|+.+.. .+..+ +...++..++
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~----~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g 424 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAK----AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWG 424 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHH----hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhC
Confidence 45667889999999999987 44444321 221 2368999999999996421 11111 1111233343
Q ss_pred --CeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 76 --CKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 76 --~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
++++++||++|.||+++|+.|...
T Consensus 425 ~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 425 GDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCceEEEEeCCCCCCchHHHHhhhhh
Confidence 689999999999999999998754
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.74 E-value=7.4e-08 Score=82.97 Aligned_cols=90 Identities=12% Similarity=0.038 Sum_probs=60.6
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc------------ChhH-
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV------------TDED- 66 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v------------~~~~- 66 (167)
++..+++.+|++|+|||+++ +.+++.+.. +.. .++|+++|+||+|+...... ..+.
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 45678899999999999987 566665432 221 26899999999999632100 0000
Q ss_pred -----------HHHHHH------------hc--CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 67 -----------GKDMAT------------AY--DCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 67 -----------~~~~~~------------~~--~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
...++. ++ ..+++++||++|+|++++...|....
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 001111 12 25899999999999999999887544
No 206
>KOG0074|consensus
Probab=98.74 E-value=1.4e-08 Score=71.41 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=69.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH--HHH--HhcCCeE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK--DMA--TAYDCKF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~--~~~--~~~~~~~ 78 (167)
-+..||++.|++|||+|.+|+..|+++..-+-++.+......+|+.+.+||.|+.....+. +.+. .++ ...-+.+
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWHI 156 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEEe
Confidence 3678999999999999999999999987777666655556789999999999986432221 1111 111 1223467
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILT 98 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~ 98 (167)
-+|||..++|+.+-.+++..
T Consensus 157 q~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred eeCccccccCccCcchhhhc
Confidence 89999999999888777643
No 207
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=4.8e-08 Score=71.44 Aligned_cols=90 Identities=17% Similarity=0.049 Sum_probs=60.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+....+++||.+|+|+|.+++....+ ..+...+ .+.|+++|.||+|+.+...+ ....++....+..++.+|
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 34567789999999999987643221 1122222 24689999999999643211 111122233345789999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|+++.|++++...+...+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999998888764
No 208
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.73 E-value=6.5e-08 Score=85.66 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
+.+|++|+|+|.++.+. ...|..++.+. ++|+++|.||+|+.+.+.+. .....+.+.+|++++++||.+|.|
T Consensus 84 ~~aD~vI~VvDat~ler---~l~l~~ql~e~----giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~G 155 (772)
T PRK09554 84 GDADLLINVVDASNLER---NLYLTLQLLEL----GIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRG 155 (772)
T ss_pred cCCCEEEEEecCCcchh---hHHHHHHHHHc----CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCC
Confidence 48999999999987543 23355555443 68999999999987555443 456678888999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15004 89 VDELLVGILTQI 100 (167)
Q Consensus 89 v~~lf~~l~~~i 100 (167)
++++++.+.+..
T Consensus 156 IdeL~~~I~~~~ 167 (772)
T PRK09554 156 IEALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHHHHhh
Confidence 999998887654
No 209
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.73 E-value=2.8e-08 Score=70.41 Aligned_cols=78 Identities=14% Similarity=0.028 Sum_probs=54.0
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFH--VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~--~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
....++.+|++|+|+|+.++.+.. .+..|+... ..+.|+++|.||+|+.+...+ .......+..+..++++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~i 77 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFF 77 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEE
Confidence 345678999999999998876544 334444332 146899999999999643321 22334445567889999
Q ss_pred ecCCCCC
Q psy15004 82 SVGINHN 88 (167)
Q Consensus 82 SA~~~~~ 88 (167)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998865
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.72 E-value=5.3e-08 Score=80.59 Aligned_cols=94 Identities=24% Similarity=0.240 Sum_probs=59.3
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhc---CCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAY---DCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~---~~~~~ 79 (167)
..++..+|++|+|+|.++........+.+..+... .-.|+++|+||+|+.+.... ..++...+.... +++++
T Consensus 98 ~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii 174 (406)
T TIGR03680 98 LSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPII 174 (406)
T ss_pred HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEE
Confidence 34456789999999998632011111222222222 12468999999999753221 123333333332 57899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++||++|.|++++++.|...+.
T Consensus 175 ~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 175 PVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred EEECCCCCChHHHHHHHHHhCC
Confidence 9999999999999999987654
No 211
>COG2262 HflX GTPases [General function prediction only]
Probab=98.72 E-value=1.5e-07 Score=76.61 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=64.5
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINH 87 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~ 87 (167)
...||.+|+|.|.+++...+.+..-.+-+.+. +..++|+|+|.||+|+..+.. ....+..... ..+.+||++|.
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~ 342 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGE 342 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCc
Confidence 45799999999999997666665544444433 345699999999999764322 1111111112 58999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy15004 88 NVDELLVGILTQIRLK 103 (167)
Q Consensus 88 ~v~~lf~~l~~~i~~~ 103 (167)
|++.+++.|...+...
T Consensus 343 gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 343 GLDLLRERIIELLSGL 358 (411)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999888754
No 212
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.71 E-value=3.5e-08 Score=72.45 Aligned_cols=81 Identities=16% Similarity=0.056 Sum_probs=53.1
Q ss_pred hcccCC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhcC--Ce
Q psy15004 5 IANYET---PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAYD--CK 77 (167)
Q Consensus 5 ~~y~~~---ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~ 77 (167)
..|++. +|++|+|+|.+++.+..+.. ++..+.. .+.|+++|+||+|+...... ..++.+......+ +.
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 356654 57999999998765555432 3333322 36899999999998643221 2233444444443 48
Q ss_pred EEEEecCCCCCHH
Q psy15004 78 FIETSVGINHNVD 90 (167)
Q Consensus 78 ~~e~SA~~~~~v~ 90 (167)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.71 E-value=6e-08 Score=80.38 Aligned_cols=85 Identities=25% Similarity=0.215 Sum_probs=56.2
Q ss_pred CCcEEEEEEeCCCH----HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhc---CCeEEE
Q psy15004 10 TPHGFIIVYSTIDL----ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAY---DCKFIE 80 (167)
Q Consensus 10 ~ad~~i~v~d~t~~----~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~---~~~~~e 80 (167)
.+|++|+|+|+++. .+++.+. .+... .-.|+++|+||+|+.+.... ..++...+.... +.++++
T Consensus 108 ~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 180 (411)
T PRK04000 108 LMDGAILVIAANEPCPQPQTKEHLM----ALDII---GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIP 180 (411)
T ss_pred hCCEEEEEEECCCCCCChhHHHHHH----HHHHc---CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEE
Confidence 45999999999853 3333332 22111 12368999999999753221 112333444332 468999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+||++|.|++++++.|...+.
T Consensus 181 vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 181 VSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred EECCCCcCHHHHHHHHHHhCC
Confidence 999999999999999987664
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.67 E-value=1.4e-07 Score=81.83 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=60.6
Q ss_pred hcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccC--hhHHHHHHHhcC---
Q psy15004 5 IANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVT--DEDGKDMATAYD--- 75 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~--~~~~~~~~~~~~--- 75 (167)
..++.++|++|+|+|.++ +.+.+.+ ..+... ++| +|+|+||+|+.+...+. .++...+....+
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~l----gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~ 140 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHL----AILQLT----GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAE 140 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHHc----CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 456788999999999987 4444443 222221 345 67999999997532221 233444444444
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
.+++++||++|.|++++++.|.....
T Consensus 141 ~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 141 AKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999876543
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.67 E-value=7.7e-08 Score=83.02 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=67.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc-ChhHHHHHHH-------hc
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV-TDEDGKDMAT-------AY 74 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v-~~~~~~~~~~-------~~ 74 (167)
....+++.+|++|+|+|.++. .+.....|+..+... ++|+|+|+||+|+.+.+.. ..++...+.. ..
T Consensus 80 ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l 154 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQL 154 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccc
Confidence 346788999999999999762 334445666666443 6899999999998653321 1122333332 23
Q ss_pred CCeEEEEecCCCC----------CHHHHHHHHHHHHHhh
Q psy15004 75 DCKFIETSVGINH----------NVDELLVGILTQIRLK 103 (167)
Q Consensus 75 ~~~~~e~SA~~~~----------~v~~lf~~l~~~i~~~ 103 (167)
.++++.+||++|. |++.+|+.+++.+...
T Consensus 155 ~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 155 DFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 5689999999995 7999999988877543
No 216
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.65 E-value=1.6e-07 Score=66.95 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=54.5
Q ss_pred CCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC--hhHHHHHHH--hcCCeEEEEec
Q psy15004 10 TPHGFIIVYSTIDLA--SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT--DEDGKDMAT--AYDCKFIETSV 83 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~--s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~~~--~~~~~~~e~SA 83 (167)
..+++++++|.++.. ....+..|+... +.|+++|+||+|+....... ......... ....+++++||
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 457899999987652 222334454432 47999999999985432211 112222222 23458999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy15004 84 GINHNVDELLVGILTQ 99 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~ 99 (167)
+++.|++++++.|.+.
T Consensus 154 ~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQGIDELRALIEKW 169 (170)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998765
No 217
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.61 E-value=1.6e-07 Score=64.08 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=57.2
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
...|++.++++++||+.+++.+++.+ |...+... ...++|.++++||.|+.+...+..+++ ..|+++|+
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~ 108 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSA 108 (124)
T ss_pred cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhC
Confidence 46789999999999999999999866 88777543 345789999999999854333333222 34567899
Q ss_pred CCCCCHH
Q psy15004 84 GINHNVD 90 (167)
Q Consensus 84 ~~~~~v~ 90 (167)
+++.|+.
T Consensus 109 ~~~~~~~ 115 (124)
T smart00010 109 KTPEEGE 115 (124)
T ss_pred CCcchhh
Confidence 9999874
No 218
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.57 E-value=7e-07 Score=65.42 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=70.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc--CCeEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIE 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e 80 (167)
|+..+.++++++|++.|.+++..| .....++.+... ..+|+++..||.||.+.. +++..+++.... ..+.++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceee
Confidence 677889999999999999999888 445555555332 239999999999997644 455555555543 779999
Q ss_pred EecCCCCCHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~ 99 (167)
++|.++.++.+..+.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999888776654
No 219
>KOG1489|consensus
Probab=98.55 E-value=3.7e-07 Score=72.23 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=64.8
Q ss_pred ccCCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhC-CCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 7 NYETPHGFIIVYSTIDL---ASFHVAEQCLQALWKKD-SIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~---~s~~~~~~~~~~l~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
.++.|+..+||.|++.. ..++.+.....++..+. ...+.|.++|+||+|+.+.. ......+++...- .++++
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pv 347 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPV 347 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEe
Confidence 45678999999999987 77777766666664432 24578999999999985321 1122455665543 49999
Q ss_pred ecCCCCCHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILT 98 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~ 98 (167)
||++++|+.++...|-.
T Consensus 348 sA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeccccchHHHHHHHhh
Confidence 99999999998877654
No 220
>PRK13796 GTPase YqeH; Provisional
Probab=98.55 E-value=4.5e-07 Score=74.08 Aligned_cols=84 Identities=24% Similarity=0.255 Sum_probs=58.1
Q ss_pred cCCCc-EEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH----HHHHhcCC---eEE
Q psy15004 8 YETPH-GFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK----DMATAYDC---KFI 79 (167)
Q Consensus 8 ~~~ad-~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~----~~~~~~~~---~~~ 79 (167)
+..+| .+++|+|+.|.. ..|..++.+.. .+.|+++|+||+||... .+..+... .+++..|+ .++
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 34555 889999998732 23555554432 26799999999999642 22233333 33555665 589
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~ 99 (167)
.+||+++.|++++++.|.+.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 221
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.54 E-value=1.8e-07 Score=77.84 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=53.9
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCccc----cChhHHHHHHHhcC-----
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRCRV----VTDEDGKDMATAYD----- 75 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~----v~~~~~~~~~~~~~----- 75 (167)
..+.++|++|+|+|++++.++... ..++..+... ...|+++|+||+|+.+... ...++...+....+
T Consensus 103 ~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 179 (425)
T PRK12317 103 TGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDD 179 (425)
T ss_pred hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCc
Confidence 345689999999999873222221 2222222222 1246999999999964211 11234445555554
Q ss_pred CeEEEEecCCCCCHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLV 94 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~ 94 (167)
++++++||++|.|+++++.
T Consensus 180 ~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 180 IPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred ceEEEeecccCCCcccccc
Confidence 4799999999999998653
No 222
>COG1159 Era GTPase [General function prediction only]
Probab=98.52 E-value=5.4e-07 Score=70.74 Aligned_cols=94 Identities=21% Similarity=0.120 Sum_probs=65.1
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHH-HHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQC-LQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~-~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
....+.++|+++||.|.++.-. .-.+| ++.+.. .+.|++++.||+|..............+.....+ ..+++
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWG--PGDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred HHHHhccCcEEEEEEeccccCC--ccHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence 4456889999999999987322 22333 344432 3679999999999876544212333333334444 78999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
||+.|.|++.+.+.+...+.+.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCC
Confidence 9999999999998888877653
No 223
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=6e-07 Score=70.67 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=60.8
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
....++.||++|+|+|..++.+.++ .++.++. .+.|+|+|.||+|+.+.... ..... .....+..++.+||
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~-~~~~~-~~~~~~~~vi~iSa 85 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT-KQWLK-YFEEKGIKALAINA 85 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH-HHHHH-HHHHcCCeEEEEEC
Confidence 3456789999999999987654332 2222321 25799999999999642211 11111 22334567899999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15004 84 GINHNVDELLVGILTQIRL 102 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~ 102 (167)
+++.|++++.+.+.+.+..
T Consensus 86 ~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 9999999999888877654
No 224
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.51 E-value=5.2e-07 Score=74.40 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=62.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIE 80 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e 80 (167)
+.+...+..||++|||+|...--+-++ +.....++ . .+.|+|||+||+|-.. .+......-.+|+ .++.
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr-~---~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ 144 (444)
T COG1160 75 EQALIAIEEADVILFVVDGREGITPAD-EEIAKILR-R---SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVP 144 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHH-h---cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceE
Confidence 456777889999999999865222111 11222332 1 3689999999999642 2222222334566 7899
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+||..|.|+.++.+.++..+.
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC
Confidence 999999999999999999874
No 225
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.49 E-value=4.2e-07 Score=64.60 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=57.6
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINH 87 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~ 87 (167)
.+||.+++|.|.+++.+.-. ..+.. .-+.|+|-|.||+|+... ....+.+..+.+..|+ ..|++|+.+|+
T Consensus 62 ~dad~V~ll~dat~~~~~~p-----P~fa~---~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~e 132 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFP-----PGFAS---MFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGE 132 (143)
T ss_pred hhCCEEEEEecCCCCCccCC-----chhhc---ccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCc
Confidence 47999999999998643211 11111 125799999999999732 1234566677777787 67999999999
Q ss_pred CHHHHHHHH
Q psy15004 88 NVDELLVGI 96 (167)
Q Consensus 88 ~v~~lf~~l 96 (167)
||+++.+.|
T Consensus 133 Gi~eL~~~L 141 (143)
T PF10662_consen 133 GIEELKDYL 141 (143)
T ss_pred CHHHHHHHH
Confidence 999998876
No 226
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.49 E-value=1.6e-06 Score=78.78 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=59.2
Q ss_pred hhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh------------hH-H
Q psy15004 4 CIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD------------ED-G 67 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~------------~~-~ 67 (167)
...++..+|++|+|+|+++ +.+++.+. .+.. .++|+|+|+||+|+........ +. .
T Consensus 543 r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~ 614 (1049)
T PRK14845 543 RKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHAL 614 (1049)
T ss_pred HHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHH
Confidence 4456788999999999987 55666443 2222 2579999999999963221100 00 0
Q ss_pred H-----------HHH------------Hhc--CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 68 K-----------DMA------------TAY--DCKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 68 ~-----------~~~------------~~~--~~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
. +++ +++ ..+++++||++|.|++++...|.....
T Consensus 615 ~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 615 TELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 0 011 112 348999999999999999988765443
No 227
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.49 E-value=1.4e-06 Score=75.31 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=59.5
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC------------hh--
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT------------DE-- 65 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~------------~~-- 65 (167)
++..++..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+....... ..
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 44567788999999999997 667765542 221 368999999999985211100 00
Q ss_pred ---------HH-HHHHH------------hc--CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 66 ---------DG-KDMAT------------AY--DCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 66 ---------~~-~~~~~------------~~--~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+. ..+.. .+ ..+++++||++|.|++++++.+....
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 11111 11 25799999999999999998876543
No 228
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.48 E-value=7.7e-07 Score=66.85 Aligned_cols=82 Identities=17% Similarity=0.050 Sum_probs=53.5
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh--cCCeEEEEecCCCCC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA--YDCKFIETSVGINHN 88 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~SA~~~~~ 88 (167)
+|.+|.|+|+++-++.. ..+..++ ...-++|+||+|+.+......+...+..+. .+.+++++||++|.|
T Consensus 113 ~~~~i~vvD~~~~~~~~--~~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 183 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIP--RKGGPGI-------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG 183 (199)
T ss_pred hCcEEEEEEcchhhhhh--hhhHhHh-------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 68899999998754422 1112222 112388899999974211112233333333 356999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy15004 89 VDELLVGILTQIR 101 (167)
Q Consensus 89 v~~lf~~l~~~i~ 101 (167)
++++|+++.+...
T Consensus 184 i~el~~~i~~~~~ 196 (199)
T TIGR00101 184 LDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999987654
No 229
>PRK09866 hypothetical protein; Provisional
Probab=98.48 E-value=1.3e-06 Score=75.39 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=60.0
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH----hcC--C-eE
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT----AYD--C-KF 78 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~----~~~--~-~~ 78 (167)
..++++|++|||.|.+...+..+ ....+.+... ....|+++|.||+|+.+......+....+.. ..+ . .+
T Consensus 254 eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eI 330 (741)
T PRK09866 254 QQLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQI 330 (741)
T ss_pred HHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceE
Confidence 36789999999999987544333 2234444332 1236999999999986422212333333322 112 2 68
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~ 99 (167)
|++||+.|.|++++++.|...
T Consensus 331 fPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 331 FPVSSMWGYLANRARHELANN 351 (741)
T ss_pred EEEeCCCCCCHHHHHHHHHhC
Confidence 999999999999999888763
No 230
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.47 E-value=6.8e-07 Score=67.38 Aligned_cols=84 Identities=19% Similarity=0.065 Sum_probs=51.5
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc----cChhHHHHHHHhcCC---e
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV----VTDEDGKDMATAYDC---K 77 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~----v~~~~~~~~~~~~~~---~ 77 (167)
..+++.+|++|+|+|+++...-+ .......+... ...++|+|+||+|+..... ....+...+...+++ +
T Consensus 95 ~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 170 (208)
T cd04166 95 VTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL---GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDIT 170 (208)
T ss_pred HHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc---CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCce
Confidence 44678999999999998742111 12222222111 1235788999999864211 011234445555553 5
Q ss_pred EEEEecCCCCCHHHH
Q psy15004 78 FIETSVGINHNVDEL 92 (167)
Q Consensus 78 ~~e~SA~~~~~v~~l 92 (167)
++++||++|.|+++.
T Consensus 171 ii~iSA~~g~ni~~~ 185 (208)
T cd04166 171 FIPISALDGDNVVSR 185 (208)
T ss_pred EEEEeCCCCCCCccC
Confidence 899999999998853
No 231
>PRK01889 GTPase RsgA; Reviewed
Probab=98.46 E-value=9.3e-07 Score=72.03 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=59.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH-hcCCeEEEEecCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT-AYDCKFIETSVGIN 86 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~SA~~~ 86 (167)
..++|.+++|+++...-....++.++..+... +++.++|.||+||.+... +....+.. ..+++++.+|++++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~----~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES----GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc----CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence 57899999999997544555566676666443 678899999999975311 11222222 34778999999999
Q ss_pred CCHHHHHHHHH
Q psy15004 87 HNVDELLVGIL 97 (167)
Q Consensus 87 ~~v~~lf~~l~ 97 (167)
.|++++...|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999888774
No 232
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=1.2e-06 Score=69.25 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=61.2
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
...++.||++|+|+|..++.+.++ .++.++. .+.|+++|.||+||.+.... +....+....+..++.+||+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~vSa~ 89 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVT--KKWIEYFEEQGIKALAINAK 89 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHH--HHHHHHHHHcCCeEEEEECC
Confidence 456788999999999977654332 2333332 15799999999999642111 11112223346778999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15004 85 INHNVDELLVGILTQIRLK 103 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i~~~ 103 (167)
++.|++++.+.+...+...
T Consensus 90 ~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 90 KGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 9999999998888776543
No 233
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.40 E-value=6.2e-07 Score=68.13 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=48.3
Q ss_pred cccCCCcEEEEEEeCCCHHH---H----HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc---cc-c--ChhHHHHHHH
Q psy15004 6 ANYETPHGFIIVYSTIDLAS---F----HVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RV-V--TDEDGKDMAT 72 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s---~----~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~---~~-v--~~~~~~~~~~ 72 (167)
.++..+|++|+|+|.++... | +....| ...... ...|+|+|+||+|+... .. . ..++...+..
T Consensus 96 ~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~ 171 (219)
T cd01883 96 TGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL---GVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLK 171 (219)
T ss_pred HHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc---CCCeEEEEEEccccccccccHHHHHHHHHHHHHHHH
Confidence 34567999999999987421 1 122222 222111 23589999999999731 11 0 0112222333
Q ss_pred hcC-----CeEEEEecCCCCCHH
Q psy15004 73 AYD-----CKFIETSVGINHNVD 90 (167)
Q Consensus 73 ~~~-----~~~~e~SA~~~~~v~ 90 (167)
..+ ++++++||++|.|++
T Consensus 172 ~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 172 KVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HcCCCcCCceEEEeecCcCCCCC
Confidence 433 579999999999987
No 234
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.39 E-value=3.3e-06 Score=64.57 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHH---------------
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMAT--------------- 72 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~--------------- 72 (167)
.+|++++|+|...... .....++..+... ++|+++|.||+|+.+...+.. ++...+..
T Consensus 109 ~~D~~llVvda~~g~~-~~d~~~l~~l~~~----~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~ 183 (224)
T cd04165 109 APDYAMLVVAANAGII-GMTKEHLGLALAL----NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDD 183 (224)
T ss_pred CCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeeccc
Confidence 5899999999876322 2223344444332 689999999999864322211 11111211
Q ss_pred -----------hcCCeEEEEecCCCCCHHHHHHHHH
Q psy15004 73 -----------AYDCKFIETSVGINHNVDELLVGIL 97 (167)
Q Consensus 73 -----------~~~~~~~e~SA~~~~~v~~lf~~l~ 97 (167)
....++|.+||.+|.|++++...|.
T Consensus 184 ~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 184 DVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred ceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 0123899999999999999886653
No 235
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.37 E-value=2.1e-06 Score=68.66 Aligned_cols=98 Identities=20% Similarity=0.136 Sum_probs=67.5
Q ss_pred ccCCCcEEEEEEeCCCHH---HHHHHHHHHHHHHhhC-CCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeE-EEE
Q psy15004 7 NYETPHGFIIVYSTIDLA---SFHVAEQCLQALWKKD-SIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKF-IET 81 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~---s~~~~~~~~~~l~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~-~e~ 81 (167)
.++.+.++++|.|++..+ ..++......++..+. ...+.|.++|+||+|+....+........+....++.. +.+
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~I 313 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLI 313 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceee
Confidence 345678999999998644 4666666666665542 23578999999999965443333333444555545432 229
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||.++.|++++...+.+.+....
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 314 SALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHhh
Confidence 99999999999999988877653
No 236
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.37 E-value=7.7e-07 Score=66.93 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=43.6
Q ss_pred hhhcccCCC-cEEEEEEeCCCH-HHHHHHHHHHHHHHhhC--CCCCceEEEEEecCCCCC
Q psy15004 3 ECIANYETP-HGFIIVYSTIDL-ASFHVAEQCLQALWKKD--SIRSKAVILVANKTDLVR 58 (167)
Q Consensus 3 ~~~~y~~~a-d~~i~v~d~t~~-~s~~~~~~~~~~l~~~~--~~~~~piilvgNK~Dl~~ 58 (167)
+...||+++ +++|||+|.++. .++..+..|+..+.... ....+|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 64 KLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 456789998 999999999997 78888777766553321 125799999999999864
No 237
>PRK10218 GTP-binding protein; Provisional
Probab=98.36 E-value=2.1e-06 Score=74.32 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=61.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc-ChhHHHHHHH-------hc
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV-TDEDGKDMAT-------AY 74 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v-~~~~~~~~~~-------~~ 74 (167)
.+..|++.+|++|+|+|.++....+. ..++..+.. .++|+|+|.||+|+...+.. ..++...+.. ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 45678999999999999987432222 333334333 36889999999998643211 0122222321 23
Q ss_pred CCeEEEEecCCCC----------CHHHHHHHHHHHHHh
Q psy15004 75 DCKFIETSVGINH----------NVDELLVGILTQIRL 102 (167)
Q Consensus 75 ~~~~~e~SA~~~~----------~v~~lf~~l~~~i~~ 102 (167)
.++++.+||++|. ++..+++.++..+..
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 4689999999998 577788777776643
No 238
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.35 E-value=3.3e-06 Score=63.63 Aligned_cols=56 Identities=27% Similarity=0.225 Sum_probs=40.6
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhc--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
..|.++++||+|+.+......++.....+.. .++++++||++|.|++++|+++.++
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999753222223333333333 3789999999999999999999875
No 239
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.33 E-value=1.4e-06 Score=65.86 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=37.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..++..+|++|+|+|+++..++.. ..|+..+.. .++|+++|+||+|+.
T Consensus 87 ~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 87 EVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 45677889999999999987665543 345555432 258999999999975
No 240
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.33 E-value=6.2e-06 Score=68.18 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=65.1
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH-HHHhc----CCeE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD-MATAY----DCKF 78 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-~~~~~----~~~~ 78 (167)
+...++.||.+++|.|.+.+.+-++. .....+.+ .+.++|+|.||.|+.+......++... +-..+ .++.
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeE
Confidence 44556789999999999987655542 34444433 367999999999987653333333322 22222 3489
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+.+||++|.+++++|+.+......
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHH
Confidence 999999999999999988765544
No 241
>KOG0462|consensus
Probab=98.33 E-value=4.7e-06 Score=70.22 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=62.4
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC-hhHHHHHHHhcCCeEEEEecCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT-DEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
-+.-+||+|+|.|.+.----+.+.+++.-+. .+.-+|.|.||+|++..+.-. ..+...+......+.+.+||++
T Consensus 145 slaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~ 219 (650)
T KOG0462|consen 145 SLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKT 219 (650)
T ss_pred hhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEecc
Confidence 3556899999999987444455555555552 267899999999998543210 1122222222234799999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15004 86 NHNVDELLVGILTQIRL 102 (167)
Q Consensus 86 ~~~v~~lf~~l~~~i~~ 102 (167)
|.|++++++.+++.|.-
T Consensus 220 G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 220 GLNVEELLEAIIRRVPP 236 (650)
T ss_pred CccHHHHHHHHHhhCCC
Confidence 99999999988887753
No 242
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=4.6e-06 Score=69.33 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=65.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC---eEEEEecC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC---KFIETSVG 84 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---~~~e~SA~ 84 (167)
+.-|.|+|+|.|.+.--.-+.+.+.+.-+. .+.-+|.|.||+||+.... ....+++..-.|+ ..+.+|||
T Consensus 97 LAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~dav~~SAK 169 (603)
T COG0481 97 LAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDASDAVLVSAK 169 (603)
T ss_pred HhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcchheeEecc
Confidence 445889999999998555566666666662 2577999999999975321 2233344445565 57899999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q psy15004 85 INHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i~~~~ 104 (167)
+|.||+++++.+++.+.-..
T Consensus 170 tG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 170 TGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred cCCCHHHHHHHHHhhCCCCC
Confidence 99999999999998876543
No 243
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.31 E-value=2.5e-06 Score=70.66 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=62.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..-.++||.+|+|+|.+.+.+-++.. .+. . ...+.|+++|.||+||....... .+....+.+++.+|
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~-~----~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iS 357 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLA-LIE-L----LPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISIS 357 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH-h----cccCCCEEEEEechhcccccccc-----hhhccCCCceEEEE
Confidence 4556678999999999999852222211 222 1 23478999999999997543311 11112245789999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.|++++.+.|.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999988887765
No 244
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.2e-05 Score=67.63 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=58.3
Q ss_pred hcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHH-------HHhc
Q psy15004 5 IANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDM-------ATAY 74 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-------~~~~ 74 (167)
..-+.=+|.+|||.|++| |.+.+.+.. ++. .++|+|++.||+|..+.. +.....- ...|
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak~----a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~ 141 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINH----AKA----AGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEW 141 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHH----HHH----CCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhc
Confidence 334556899999999988 555554432 222 489999999999987432 2222211 2233
Q ss_pred C--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 75 D--CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 75 ~--~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+ ..|+++||++|+|+++|++.++-+.
T Consensus 142 gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 142 GGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 2 4799999999999999998877543
No 245
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.26 E-value=5.5e-06 Score=66.49 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=71.1
Q ss_pred ChhhhcccCCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc----------
Q psy15004 1 PEECIANYETPHGFIIVYSTIDL----------ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR---------- 60 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~----------~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~---------- 60 (167)
|..+..||.+++++|+|+|+++- ..+++....++.+.......++|++|++||.|+..+.
T Consensus 175 R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~f 254 (317)
T cd00066 175 RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYF 254 (317)
T ss_pred chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccC
Confidence 45788999999999999999873 4566655566666554445689999999999973211
Q ss_pred ------ccChhHHHHHHHh----------cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 61 ------VVTDEDGKDMATA----------YDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 61 ------~v~~~~~~~~~~~----------~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.-..+.+..+... ..+....|+|.+..++..+|+.+.+.|...
T Consensus 255 p~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 255 PDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 1112333333221 123456688999999999999988888764
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.24 E-value=2.3e-06 Score=71.75 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=54.0
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHH-------HHHHHHHHHHhhCCCCCc-eEEEEEecCCCCCcc---c---cChhHHHH
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFH-------VAEQCLQALWKKDSIRSK-AVILVANKTDLVRCR---V---VTDEDGKD 69 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~-------~~~~~~~~l~~~~~~~~~-piilvgNK~Dl~~~~---~---v~~~~~~~ 69 (167)
...++..+|++|+|+|.++ ..|+ ...+.+..+.. .++ ++|+++||+|+.+.. . ...++...
T Consensus 102 ~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~ 176 (447)
T PLN00043 102 MITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS 176 (447)
T ss_pred HHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHH
Confidence 4567889999999999986 3443 22222222222 256 478899999986210 0 01245566
Q ss_pred HHHhcC-----CeEEEEecCCCCCHHH
Q psy15004 70 MATAYD-----CKFIETSVGINHNVDE 91 (167)
Q Consensus 70 ~~~~~~-----~~~~e~SA~~~~~v~~ 91 (167)
+.+..| ++|+++||++|.|+.+
T Consensus 177 ~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 177 YLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHHcCCCcccceEEEEeccccccccc
Confidence 666665 5799999999999854
No 247
>KOG0077|consensus
Probab=98.23 E-value=1.4e-06 Score=62.95 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=69.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH------HHHhc-
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD------MATAY- 74 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~------~~~~~- 74 (167)
..+..||-.+|++++.+|+-|.+.|.+.+.-++.+.......++|+++.|||+|..... ++++.+. +....
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~ 156 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKG 156 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccc
Confidence 34677999999999999999999999888777777655556789999999999987533 2222221 11111
Q ss_pred -------C---CeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 75 -------D---CKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 75 -------~---~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
+ +..+.||...+.+..+.|.++.+.
T Consensus 157 ~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 157 KVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 1 246778888888877888777654
No 248
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=63.86 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=66.5
Q ss_pred ccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 7 NYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
-+.+.|-+|+|+.+.+|+ +..-+..++-... ..++..|+|.||+||.++.....++.......+|++.+.+|+++
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~ 151 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKN 151 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcC
Confidence 345578888888888875 5555566655553 24777888899999986544322345556677899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15004 86 NHNVDELLVGILTQIR 101 (167)
Q Consensus 86 ~~~v~~lf~~l~~~i~ 101 (167)
+.+++++...+...+.
T Consensus 152 ~~~~~~l~~~l~~~~s 167 (301)
T COG1162 152 GDGLEELAELLAGKIT 167 (301)
T ss_pred cccHHHHHHHhcCCeE
Confidence 9999999988876643
No 249
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.18 E-value=1.6e-05 Score=61.30 Aligned_cols=50 Identities=22% Similarity=0.200 Sum_probs=37.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..+++.+|++|+|+|.++.... ....|+..+.. .++|+++|+||+|+.
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence 356788999999999999885443 23445555543 368999999999985
No 250
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.17 E-value=2.2e-05 Score=63.75 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=70.6
Q ss_pred ChhhhcccCCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc----c-----
Q psy15004 1 PEECIANYETPHGFIIVYSTIDL----------ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR----V----- 61 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~----------~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~----~----- 61 (167)
|..|..||.+++++|||.|+++- ..+++....++.+.......++|++|++||.|+..+. .
T Consensus 198 R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~f 277 (342)
T smart00275 198 RKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYF 277 (342)
T ss_pred hhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccC
Confidence 45788999999999999999972 3566666666666555455789999999999984211 0
Q ss_pred ------cChhHHHHHHHh-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 62 ------VTDEDGKDMATA-----------YDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 62 ------v~~~~~~~~~~~-----------~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
-..+.+..+... ..+....|+|.+-.++..+|+.+...|...
T Consensus 278 p~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 278 PDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 012223222211 123456788988899999999888877653
No 251
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.16 E-value=2.1e-05 Score=58.87 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccC---hhHHHHHHHhcC-----C
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVT---DEDGKDMATAYD-----C 76 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-----~ 76 (167)
..+..+|++|+|+|.+..-.-+ ....+..+... ++| +|+|.||+|+....... .++...+....+ +
T Consensus 84 ~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~----~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v 158 (195)
T cd01884 84 TGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV----GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNT 158 (195)
T ss_pred HHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 3456899999999997632211 22233344332 466 78999999986432211 123444444433 5
Q ss_pred eEEEEecCCCCCH
Q psy15004 77 KFIETSVGINHNV 89 (167)
Q Consensus 77 ~~~e~SA~~~~~v 89 (167)
+++++||++|.|+
T Consensus 159 ~iipiSa~~g~n~ 171 (195)
T cd01884 159 PIVRGSALKALEG 171 (195)
T ss_pred eEEEeeCccccCC
Confidence 7999999999985
No 252
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.16 E-value=1.3e-05 Score=67.47 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=55.8
Q ss_pred cCCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC--hhHHHHHHHh---cCCeEEEE
Q psy15004 8 YETPHGFIIVYSTIDL-ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT--DEDGKDMATA---YDCKFIET 81 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~-~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~~~~---~~~~~~e~ 81 (167)
...+|++|+|.|.++. ..-+..+.+ ..+... .-.++|+|.||+|+.+..... .++...+... .+.+++++
T Consensus 138 ~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l---gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipV 213 (460)
T PTZ00327 138 AAVMDAALLLIAANESCPQPQTSEHL-AAVEIM---KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPI 213 (460)
T ss_pred HhhCCEEEEEEECCCCccchhhHHHH-HHHHHc---CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEe
Confidence 4578999999999863 122222222 222111 123689999999997532211 1222333222 25689999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~ 101 (167)
||++|.|+++|++.|...+.
T Consensus 214 SA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 214 SAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred eCCCCCCHHHHHHHHHhhCC
Confidence 99999999999988876443
No 253
>PRK12736 elongation factor Tu; Reviewed
Probab=98.13 E-value=1.5e-05 Score=65.80 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=53.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccC---hhHHHHHHHhcC-----CeE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVT---DEDGKDMATAYD-----CKF 78 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~ 78 (167)
...+|++|+|+|.++...-+ ....+..+... ++| +|+|.||+|+.+...+. .++...+....+ +++
T Consensus 96 ~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~----g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 170 (394)
T PRK12736 96 AAQMDGAILVVAATDGPMPQ-TREHILLARQV----GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPV 170 (394)
T ss_pred HhhCCEEEEEEECCCCCchh-HHHHHHHHHHc----CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccE
Confidence 35689999999997621111 12233333322 567 67899999987433221 123444444444 479
Q ss_pred EEEecCCCC--------CHHHHHHHHHHHH
Q psy15004 79 IETSVGINH--------NVDELLVGILTQI 100 (167)
Q Consensus 79 ~e~SA~~~~--------~v~~lf~~l~~~i 100 (167)
+++||++|. +++++++.+...+
T Consensus 171 i~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 171 IRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred EEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 999999983 4566666665544
No 254
>PRK13768 GTPase; Provisional
Probab=98.13 E-value=1.1e-05 Score=62.75 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=55.4
Q ss_pred CcEEEEEEeCCCH---HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHH-----------------
Q psy15004 11 PHGFIIVYSTIDL---ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGK----------------- 68 (167)
Q Consensus 11 ad~~i~v~d~t~~---~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~----------------- 68 (167)
++++++|+|.+.. ..+... .|+...... ..++|+++|.||+|+....+... ....
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~-~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 205 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSL-LLLALSVQL--RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQG 205 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHH-HHHHHHHHH--HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHH
Confidence 8999999999653 333322 233222211 13689999999999875432110 0000
Q ss_pred -------HHHHhcC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 69 -------DMATAYD--CKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 69 -------~~~~~~~--~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+.....+ .+++++||+++.|++++.++|.+.+.
T Consensus 206 ~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 206 LLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 1122333 47899999999999999999877653
No 255
>KOG0705|consensus
Probab=98.02 E-value=1.1e-05 Score=68.08 Aligned_cols=102 Identities=20% Similarity=0.307 Sum_probs=81.4
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC--CccccChhHHHHHHHhc-CCeEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV--RCRVVTDEDGKDMATAY-DCKFIE 80 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~e 80 (167)
...|..++|++||||.+.|..+|+.+..+..++-.+.....+|+++||++.-.. ..+.+...++..++.++ .+.||+
T Consensus 89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence 456888999999999999999999998887777655556789999999986543 33555566666665554 689999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 81 TSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
++|.+|.+++.+|+.+...+.....
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987776543
No 256
>KOG1423|consensus
Probab=97.96 E-value=2.2e-05 Score=62.19 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=58.4
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc-------------cCh---hHHHH
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV-------------VTD---EDGKD 69 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~-------------v~~---~~~~~ 69 (167)
.....||.+++|+|+++....-. ...+..+..+ ..+|-|||.||+|....+. +.. +..+.
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 34567999999999996322211 2233333333 4789999999999753221 110 11111
Q ss_pred HHH---------hcCC----eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 70 MAT---------AYDC----KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 70 ~~~---------~~~~----~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+.. ..|+ .+|.+||++|+||+++.++|+.++..
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 111 1112 48999999999999999999987754
No 257
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.93 E-value=2.9e-05 Score=59.36 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=36.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..+++.+|++|+|||+++..+.+.... +..... .++|+|+|+||+|+.
T Consensus 89 ~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 89 EVTAALRLCDGALVVVDAVEGVCVQTETV-LRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHHH----cCCCEEEEEECCCcc
Confidence 45678999999999999998655554332 233322 257999999999975
No 258
>PRK12735 elongation factor Tu; Reviewed
Probab=97.92 E-value=5.6e-05 Score=62.50 Aligned_cols=90 Identities=19% Similarity=0.194 Sum_probs=54.3
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecCCCCCcccc---ChhHHHHHHHhcC-----C
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVV---TDEDGKDMATAYD-----C 76 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~Dl~~~~~v---~~~~~~~~~~~~~-----~ 76 (167)
.-...+|++|+|+|+++...-+ ..+.+..+.. .++|.+ +|.||+|+.+.... ...+...+...++ +
T Consensus 94 ~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~ 168 (396)
T PRK12735 94 TGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDT 168 (396)
T ss_pred hhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCce
Confidence 3356789999999998632212 2233333332 257755 67999999643221 1124444555543 5
Q ss_pred eEEEEecCCCC----------CHHHHHHHHHHHH
Q psy15004 77 KFIETSVGINH----------NVDELLVGILTQI 100 (167)
Q Consensus 77 ~~~e~SA~~~~----------~v~~lf~~l~~~i 100 (167)
+++++||.+|. ++.++++.|...+
T Consensus 169 ~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 169 PIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred eEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 79999999985 4566666665543
No 259
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.91 E-value=7.5e-05 Score=61.65 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCCCCccccC---hhHHHHHHHhcC-----CeEE
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDLVRCRVVT---DEDGKDMATAYD-----CKFI 79 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~~ 79 (167)
..+|++|+|+|+++....+. .+.+..+... ++|. |+|.||+|+.+..... .++...+...++ ++++
T Consensus 97 ~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii 171 (394)
T TIGR00485 97 AQMDGAILVVSATDGPMPQT-REHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPII 171 (394)
T ss_pred hhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEE
Confidence 45799999999987221121 1223333222 5665 4689999997533221 234555566554 6899
Q ss_pred EEecCCCC
Q psy15004 80 ETSVGINH 87 (167)
Q Consensus 80 e~SA~~~~ 87 (167)
++||++|.
T Consensus 172 ~vSa~~g~ 179 (394)
T TIGR00485 172 RGSALKAL 179 (394)
T ss_pred ECcccccc
Confidence 99999875
No 260
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.90 E-value=4.2e-05 Score=66.04 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=66.4
Q ss_pred hhccc--CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 4 CIANY--ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 4 ~~~y~--~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
++.|+ .++|++|-|.|.++-+. + -..--++.+. ++|+|++.|.+|....+-+. -+...+.+..|++++++
T Consensus 73 ar~~ll~~~~D~ivnVvDAtnLeR--n-LyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~t 144 (653)
T COG0370 73 ARDFLLEGKPDLIVNVVDATNLER--N-LYLTLQLLEL----GIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPT 144 (653)
T ss_pred HHHHHhcCCCCEEEEEcccchHHH--H-HHHHHHHHHc----CCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEE
Confidence 34454 35799999999998532 1 1122334333 68999999999987655443 34567888899999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||++|.|++++...+.+....
T Consensus 145 vA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 145 VAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred EeecCCCHHHHHHHHHHhccc
Confidence 999999999999888765443
No 261
>PRK13351 elongation factor G; Reviewed
Probab=97.89 E-value=8.5e-05 Score=65.48 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=38.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
.+..+++.+|++|+|+|.++...++....| ..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 89 EVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence 456789999999999999987666655444 33322 3689999999999863
No 262
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.82 E-value=7.5e-05 Score=63.90 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=35.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..+++.+|++|+|+|.++.... ....++.... ..++|+++++||+|+.
T Consensus 95 ~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 95 DTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----LRDTPIFTFINKLDRD 144 (526)
T ss_pred HHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----hcCCCEEEEEECCccc
Confidence 356788999999999999874221 2233443332 2478999999999974
No 263
>KOG1145|consensus
Probab=97.81 E-value=0.00035 Score=59.29 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=59.2
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHH-HHHH------H
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG-KDMA------T 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~~------~ 72 (167)
|...--.-+|++++|....| +.+.+.+.. . ...++|+|+..||+|.++.. ++.. +++. .
T Consensus 217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh----A----k~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E 285 (683)
T KOG1145|consen 217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKH----A----KSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVE 285 (683)
T ss_pred HHhccCccccEEEEEEEccCCccHhHHHHHHH----H----HhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHH
Confidence 44445567899999999987 555554432 1 23589999999999976321 2222 2221 2
Q ss_pred hcC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 73 AYD--CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 73 ~~~--~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
++| .+.+++||++|.|++.|-+.++-+.
T Consensus 286 ~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 286 DLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred HcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 333 4789999999999999988876544
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.80 E-value=7.8e-05 Score=51.72 Aligned_cols=80 Identities=25% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINH 87 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~ 87 (167)
.++|++++|-.++++.|--. ..+. ..-..|+|-|.+|+||.+...+ +....|..+-|. ++|++|+.++.
T Consensus 63 ~dadvi~~v~~and~~s~f~-----p~f~---~~~~k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~IF~~s~~d~~ 132 (148)
T COG4917 63 QDADVIIYVHAANDPESRFP-----PGFL---DIGVKKVIGVVTKADLAEDADI--SLVKRWLREAGAEPIFETSAVDNQ 132 (148)
T ss_pred hccceeeeeecccCccccCC-----cccc---cccccceEEEEecccccchHhH--HHHHHHHHHcCCcceEEEeccCcc
Confidence 46777888877777643111 1111 1124569999999999864443 345666666676 89999999999
Q ss_pred CHHHHHHHHHH
Q psy15004 88 NVDELLVGILT 98 (167)
Q Consensus 88 ~v~~lf~~l~~ 98 (167)
||+++++.|..
T Consensus 133 gv~~l~~~L~~ 143 (148)
T COG4917 133 GVEELVDYLAS 143 (148)
T ss_pred cHHHHHHHHHh
Confidence 99999988764
No 265
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.79 E-value=8.2e-05 Score=44.46 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=29.1
Q ss_pred CcEEEEEEeCCCH--HHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 11 PHGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 11 ad~~i~v~d~t~~--~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
+++++|++|++.. .|.++....+++++.. ..+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 5789999999874 4677777788888654 34889999999998
No 266
>KOG1707|consensus
Probab=97.75 E-value=0.00014 Score=61.88 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=66.8
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINH 87 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~ 87 (167)
..+|++.++||++++.+|+.+...+..-.. ...+|+++|+.|+|+.+..+...-.-.+++.++++ +.+.+|.++..
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence 458999999999999999987665554422 25899999999999976554333334788999988 56667777533
Q ss_pred CHHHHHHHHHHHHHh
Q psy15004 88 NVDELLVGILTQIRL 102 (167)
Q Consensus 88 ~v~~lf~~l~~~i~~ 102 (167)
. .++|..|+..+.-
T Consensus 571 s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 571 S-NELFIKLATMAQY 584 (625)
T ss_pred C-chHHHHHHHhhhC
Confidence 3 7888888876654
No 267
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.73 E-value=0.00015 Score=57.86 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=62.6
Q ss_pred CcEEEEEEeCCCH--HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 11 PHGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 11 ad~~i~v~d~t~~--~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
++++||+||.+.. .+.+....++.++... -+.|+++|.||+|+.+...+...+.. +....+.....+++..+.+
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 323 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKGCG 323 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeehhh
Confidence 5789999999874 4667778888888654 24899999999999764443222222 3333344577889999999
Q ss_pred HHHHHHHHHHHHHh
Q psy15004 89 VDELLVGILTQIRL 102 (167)
Q Consensus 89 v~~lf~~l~~~i~~ 102 (167)
++.+...+.....+
T Consensus 324 ~d~~~~~v~~~a~~ 337 (346)
T COG1084 324 LDKLREEVRKTALE 337 (346)
T ss_pred HHHHHHHHHHHhhc
Confidence 99888777776554
No 268
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.72 E-value=0.00012 Score=60.82 Aligned_cols=82 Identities=20% Similarity=0.090 Sum_probs=48.3
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc-cC---hhHHHHHHHhcC---CeEE
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV-VT---DEDGKDMATAYD---CKFI 79 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~-v~---~~~~~~~~~~~~---~~~~ 79 (167)
-+..+|++|+|+|.+....-+..+.|. .+... ...++|+|.||+|+.+... .. .++...+....+ ++++
T Consensus 100 ~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~---~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii 175 (406)
T TIGR02034 100 GASTADLAVLLVDARKGVLEQTRRHSY-IASLL---GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFI 175 (406)
T ss_pred HHhhCCEEEEEEECCCCCccccHHHHH-HHHHc---CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEE
Confidence 456899999999987532111112221 12111 1236889999999864221 10 122223334444 4799
Q ss_pred EEecCCCCCHHHH
Q psy15004 80 ETSVGINHNVDEL 92 (167)
Q Consensus 80 e~SA~~~~~v~~l 92 (167)
++||++|.|+++.
T Consensus 176 piSA~~g~ni~~~ 188 (406)
T TIGR02034 176 PLSALKGDNVVSR 188 (406)
T ss_pred EeecccCCCCccc
Confidence 9999999998863
No 269
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.70 E-value=7.9e-05 Score=63.01 Aligned_cols=82 Identities=21% Similarity=0.110 Sum_probs=47.9
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc-cCh---hHHHHHHHhc----CCeEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV-VTD---EDGKDMATAY----DCKFI 79 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~-v~~---~~~~~~~~~~----~~~~~ 79 (167)
...+|++|+|+|.+....-+....|. .+... . -.|+|+|.||+|+.+... ... ++...+.... ..+++
T Consensus 128 l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g--~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ii 203 (474)
T PRK05124 128 ASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G--IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFV 203 (474)
T ss_pred HhhCCEEEEEEECCCCccccchHHHH-HHHHh-C--CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 47899999999987532111111121 11111 1 237899999999864221 111 1222223333 36899
Q ss_pred EEecCCCCCHHHHH
Q psy15004 80 ETSVGINHNVDELL 93 (167)
Q Consensus 80 e~SA~~~~~v~~lf 93 (167)
++||++|.|++++-
T Consensus 204 pvSA~~g~ni~~~~ 217 (474)
T PRK05124 204 PLSALEGDNVVSQS 217 (474)
T ss_pred EEEeecCCCccccc
Confidence 99999999998753
No 270
>KOG3905|consensus
Probab=97.69 E-value=0.00058 Score=54.81 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=47.1
Q ss_pred CceEEEEEecCCCC----Ccccc-------ChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 44 SKAVILVANKTDLV----RCRVV-------TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 44 ~~piilvgNK~Dl~----~~~~v-------~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++|+++|.+|||.. .+.+. .....+.||-.+|...|.+|++...|++-+...|+..++-
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 58999999999983 22211 1245577888999999999999999999999999988754
No 271
>PRK12740 elongation factor G; Reviewed
Probab=97.67 E-value=0.00025 Score=62.36 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=37.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 76 ~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 76 EVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence 356678899999999999886655544433 33322 368999999999985
No 272
>CHL00071 tufA elongation factor Tu
Probab=97.61 E-value=0.0003 Score=58.43 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=48.5
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccC---hhHHHHHHHhcC-----Ce
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVT---DEDGKDMATAYD-----CK 77 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-----~~ 77 (167)
-+..+|++++|+|.+.... ......+..+... ++| +|++.||+|+.+..+.. .++...+.+..+ ++
T Consensus 95 ~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~----g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 169 (409)
T CHL00071 95 GAAQMDGAILVVSAADGPM-PQTKEHILLAKQV----GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIP 169 (409)
T ss_pred HHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcce
Confidence 3567999999999876321 2223333344322 577 77899999997533221 123444444433 58
Q ss_pred EEEEecCCCCCH
Q psy15004 78 FIETSVGINHNV 89 (167)
Q Consensus 78 ~~e~SA~~~~~v 89 (167)
++.+||.+|.|+
T Consensus 170 ii~~Sa~~g~n~ 181 (409)
T CHL00071 170 IVSGSALLALEA 181 (409)
T ss_pred EEEcchhhcccc
Confidence 999999998753
No 273
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.59 E-value=0.00016 Score=57.56 Aligned_cols=85 Identities=20% Similarity=0.093 Sum_probs=51.8
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--h----HHHHHHH---hcCCeE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--E----DGKDMAT---AYDCKF 78 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~----~~~~~~~---~~~~~~ 78 (167)
...+|.++++-+.. +-+++......+ .++|.++|.||+|+........ . ....+.. .+..++
T Consensus 145 ~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v 215 (300)
T TIGR00750 145 ANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPV 215 (300)
T ss_pred HHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCE
Confidence 44567777774332 334444333333 2567899999999874321110 0 0011111 123469
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+++||+++.|++++++++.+...
T Consensus 216 ~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 216 LTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEEEccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 274
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.59 E-value=0.00068 Score=54.82 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=53.9
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC--hhHHHHHHH-------hcCCeE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT--DEDGKDMAT-------AYDCKF 78 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~~~-------~~~~~~ 78 (167)
...||.+|+|.+....+..+.++ ..+.+ +.-|+|.||+|+....... ..+...... .+..++
T Consensus 167 ~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pV 237 (332)
T PRK09435 167 AGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPV 237 (332)
T ss_pred HHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCE
Confidence 34689999997644444444332 21211 2248999999986432110 111111111 123479
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
+.+||+++.||+++++.|.+.+....
T Consensus 238 i~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 238 LTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998876443
No 275
>PRK00049 elongation factor Tu; Reviewed
Probab=97.57 E-value=0.00062 Score=56.31 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=46.4
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecCCCCCccccC---hhHHHHHHHhc-----CC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVT---DEDGKDMATAY-----DC 76 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~Dl~~~~~v~---~~~~~~~~~~~-----~~ 76 (167)
.....+|++++|+|.++... .....++..+... ++|.+ ++.||+|+.+..... ..+...+.... ++
T Consensus 94 ~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (396)
T PRK00049 94 TGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDT 168 (396)
T ss_pred hhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc----CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 34578999999999976322 2223344444332 57875 589999996422211 12233333333 35
Q ss_pred eEEEEecCCCC
Q psy15004 77 KFIETSVGINH 87 (167)
Q Consensus 77 ~~~e~SA~~~~ 87 (167)
+++.+||+++.
T Consensus 169 ~iv~iSa~~g~ 179 (396)
T PRK00049 169 PIIRGSALKAL 179 (396)
T ss_pred cEEEeeccccc
Confidence 89999999875
No 276
>KOG1490|consensus
Probab=97.56 E-value=0.00035 Score=58.75 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred cEEEEEEeCCCH--HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHH---HHHHHhcCCeEEEEecCCC
Q psy15004 12 HGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG---KDMATAYDCKFIETSVGIN 86 (167)
Q Consensus 12 d~~i~v~d~t~~--~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~---~~~~~~~~~~~~e~SA~~~ 86 (167)
.++||+.|++.. .|.+....++..|... ..+.|+|+|.||+|+.....+..+.. +.+....+++++++|+.+.
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 368899999874 3555555566666433 35789999999999976666554332 2233344589999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy15004 87 HNVDELLVGILTQIRLK 103 (167)
Q Consensus 87 ~~v~~lf~~l~~~i~~~ 103 (167)
.||.+|.......+...
T Consensus 327 egVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 327 EGVMDVRTTACEALLAA 343 (620)
T ss_pred hceeeHHHHHHHHHHHH
Confidence 99999988888766653
No 277
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.55 E-value=0.00036 Score=56.11 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=38.0
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhc-CCeEEEEecCCCCCHHHHHH-HHHHHHH
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAY-DCKFIETSVGINHNVDELLV-GILTQIR 101 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~SA~~~~~v~~lf~-~l~~~i~ 101 (167)
..|+|+|+||+|+..... ....+.... ...++.+||+.+.+++++.+ .+++.+.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 469999999999853221 111222233 45799999999999999887 5777664
No 278
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.54 E-value=0.00045 Score=54.21 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=35.1
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
+..+++.+|++|+|+|.++.... ....++..... .++|+++++||+|+..
T Consensus 88 ~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~----~~~P~iivvNK~D~~~ 137 (267)
T cd04169 88 TYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL----RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh----cCCCEEEEEECCccCC
Confidence 56678899999999999874321 22334433322 3689999999999864
No 279
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.54 E-value=0.0011 Score=49.42 Aligned_cols=87 Identities=16% Similarity=0.078 Sum_probs=54.6
Q ss_pred cCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCccc-----------cChhHHHHHH----
Q psy15004 8 YETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRCRV-----------VTDEDGKDMA---- 71 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~-----------v~~~~~~~~~---- 71 (167)
+.++|++|+|.| . +|... ..|+..+... +.|+++|+||+|+..... ...++.+..+
T Consensus 78 ~~~~d~~l~v~~-~---~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 149 (197)
T cd04104 78 FSEYDFFIIISS-T---RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL 149 (197)
T ss_pred ccCcCEEEEEeC-C---CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence 678999999854 2 23333 4466666543 579999999999842111 0011111111
Q ss_pred HhcC---CeEEEEecC--CCCCHHHHHHHHHHHHHh
Q psy15004 72 TAYD---CKFIETSVG--INHNVDELLVGILTQIRL 102 (167)
Q Consensus 72 ~~~~---~~~~e~SA~--~~~~v~~lf~~l~~~i~~ 102 (167)
...+ -++|-+|+. .+.++..+.+.+...+..
T Consensus 150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1212 278999998 578999999988887765
No 280
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.54 E-value=0.00092 Score=53.50 Aligned_cols=51 Identities=29% Similarity=0.265 Sum_probs=40.2
Q ss_pred ceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 45 KAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 45 ~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+|.++|.||+|+.. .++...+.+.. .++.+||..+.|++++.+.|.+.+-.
T Consensus 240 ~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 240 KPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred eeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 78999999999864 33444454443 78999999999999999999886643
No 281
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.52 E-value=0.00034 Score=61.22 Aligned_cols=81 Identities=22% Similarity=0.111 Sum_probs=47.9
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc-cccC---hhHHHHHHHhcCC---eEE
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC-RVVT---DEDGKDMATAYDC---KFI 79 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~-~~v~---~~~~~~~~~~~~~---~~~ 79 (167)
....+|++|+|+|.+....-+..+.+ ..+... ...++|+|.||+|+.+. .... ..+...+...+++ +++
T Consensus 124 ~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ii 199 (632)
T PRK05506 124 GASTADLAIILVDARKGVLTQTRRHS-FIASLL---GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFI 199 (632)
T ss_pred HHHhCCEEEEEEECCCCccccCHHHH-HHHHHh---CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEE
Confidence 35689999999999753211111111 122212 12578999999998641 1111 1222233344443 699
Q ss_pred EEecCCCCCHHH
Q psy15004 80 ETSVGINHNVDE 91 (167)
Q Consensus 80 e~SA~~~~~v~~ 91 (167)
++||++|.|+++
T Consensus 200 piSA~~g~ni~~ 211 (632)
T PRK05506 200 PISALKGDNVVT 211 (632)
T ss_pred EEecccCCCccc
Confidence 999999999885
No 282
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00021 Score=57.09 Aligned_cols=88 Identities=22% Similarity=0.203 Sum_probs=60.1
Q ss_pred CcEEEEEEeCCC----HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHh---cCCeEEEE
Q psy15004 11 PHGFIIVYSTID----LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATA---YDCKFIET 81 (167)
Q Consensus 11 ad~~i~v~d~t~----~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~---~~~~~~e~ 81 (167)
-|++|+|.+.+. |.+-+.+.. -+|.. -..+|+|.||+||...... ..++..+|.+. .+.+++++
T Consensus 110 MDgAlLvIaANEpcPQPQT~EHl~A--leIig-----ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPi 182 (415)
T COG5257 110 MDGALLVIAANEPCPQPQTREHLMA--LEIIG-----IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPI 182 (415)
T ss_pred hcceEEEEecCCCCCCCchHHHHHH--Hhhhc-----cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeee
Confidence 389999999876 334443321 12211 2358999999999753221 23455555552 36799999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||..+.|+|.+++.|.+.|.....
T Consensus 183 SA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 183 SAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred hhhhccCHHHHHHHHHHhCCCCcc
Confidence 999999999999999998876443
No 283
>KOG0090|consensus
Probab=97.49 E-value=0.00048 Score=51.98 Aligned_cols=96 Identities=17% Similarity=0.307 Sum_probs=59.3
Q ss_pred hhhcccC---CCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhC--CCCCceEEEEEecCCCCCccc---------------
Q psy15004 3 ECIANYE---TPHGFIIVYSTID-LASFHVAEQCLQALWKKD--SIRSKAVILVANKTDLVRCRV--------------- 61 (167)
Q Consensus 3 ~~~~y~~---~ad~~i~v~d~t~-~~s~~~~~~~~~~l~~~~--~~~~~piilvgNK~Dl~~~~~--------------- 61 (167)
....||. .+-++|||.|..- ..-..++.+++-.+.... ....+|++++.||.|+...+.
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence 3456666 7999999999853 334455555555544332 245789999999999842110
Q ss_pred ---------cCh----------hHHHH--HHH--hcCCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 62 ---------VTD----------EDGKD--MAT--AYDCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 62 ---------v~~----------~~~~~--~~~--~~~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
+.. .++.. |.. .....|.++|++++ +++++-+|+.+.
T Consensus 178 r~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 178 RESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 100 11111 111 12346899999988 899998888654
No 284
>PLN03127 Elongation factor Tu; Provisional
Probab=97.42 E-value=0.00097 Score=56.07 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=49.5
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccCh---hHHHHHHHhc-----CCeE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVTD---EDGKDMATAY-----DCKF 78 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~~---~~~~~~~~~~-----~~~~ 78 (167)
...+|++++|+|.++...-+ ..+.+..+... ++| +|+|.||+|+.+...... .+...+.... .+++
T Consensus 145 ~~~aD~allVVda~~g~~~q-t~e~l~~~~~~----gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpi 219 (447)
T PLN03127 145 AAQMDGGILVVSAPDGPMPQ-TKEHILLARQV----GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPI 219 (447)
T ss_pred HhhCCEEEEEEECCCCCchh-HHHHHHHHHHc----CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 34699999999987632211 12233333322 578 578899999975322111 1222333322 2578
Q ss_pred EEEecC---CCCC-------HHHHHHHHHHHH
Q psy15004 79 IETSVG---INHN-------VDELLVGILTQI 100 (167)
Q Consensus 79 ~e~SA~---~~~~-------v~~lf~~l~~~i 100 (167)
+.+||. +|.| +.++++.|...+
T Consensus 220 ip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 220 IRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred EEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 888876 4555 556666655543
No 285
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.36 E-value=0.0019 Score=48.34 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=53.7
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh----cCCe--EEEEecC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA----YDCK--FIETSVG 84 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~----~~~~--~~e~SA~ 84 (167)
-.+++++.|+.....-.+ .++++-+.. .++|+++|.||+|-....+.. ......++. .... ++..|+.
T Consensus 107 L~~vvlliD~r~~~~~~D-~em~~~l~~----~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 107 LKGVVLLIDARHPPKDLD-REMIEFLLE----LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSL 180 (200)
T ss_pred heEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecc
Confidence 568888999865432222 123333432 279999999999976533221 111222222 2222 7788999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15004 85 INHNVDELLVGILTQIRL 102 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i~~ 102 (167)
.+.|++++...|...+..
T Consensus 181 ~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 181 KKKGIDELKAKILEWLKE 198 (200)
T ss_pred cccCHHHHHHHHHHHhhc
Confidence 999999999888876653
No 286
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.29 E-value=0.00051 Score=51.18 Aligned_cols=54 Identities=30% Similarity=0.168 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCccccChhHHHHHHHhc--CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 47 VILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 47 iilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
=++|.||.||...-..+.+....-+++. +.+++++|+++|+|+++++.++....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4889999999754444445455545543 57999999999999999998887654
No 287
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.23 E-value=0.0014 Score=55.16 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=47.2
Q ss_pred cccCCCcEEEEEEeCCCHH---HH----HHHHHHHHHHHhhCCCCCce-EEEEEecCCCCC--c--ccc--ChhHHHHHH
Q psy15004 6 ANYETPHGFIIVYSTIDLA---SF----HVAEQCLQALWKKDSIRSKA-VILVANKTDLVR--C--RVV--TDEDGKDMA 71 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~---s~----~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~--~--~~v--~~~~~~~~~ 71 (167)
.-...+|++|+|+|.+.-. .| +..+.|. .+... ++| +|++.||+|... . ..+ ..++...+.
T Consensus 104 ~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~----gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l 178 (446)
T PTZ00141 104 TGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL----GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYL 178 (446)
T ss_pred HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc----CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHH
Confidence 3456899999999987531 11 1112232 23222 555 678999999531 1 111 112333333
Q ss_pred Hhc-----CCeEEEEecCCCCCHHH
Q psy15004 72 TAY-----DCKFIETSVGINHNVDE 91 (167)
Q Consensus 72 ~~~-----~~~~~e~SA~~~~~v~~ 91 (167)
... +++|+.+||.+|.|+.+
T Consensus 179 ~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 179 KKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HhcCCCcccceEEEeecccCCCccc
Confidence 333 35799999999999864
No 288
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.23 E-value=0.0018 Score=50.57 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=49.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE--E
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI--E 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~--e 80 (167)
.+..+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+.... ..+....+...++..++ .
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 356678899999999999886554433333 23322 368999999999986431 12233344444554433 3
Q ss_pred EecCCCCCHHH
Q psy15004 81 TSVGINHNVDE 91 (167)
Q Consensus 81 ~SA~~~~~v~~ 91 (167)
+...++.++..
T Consensus 153 ip~~~~~~~~~ 163 (268)
T cd04170 153 LPIGEGDDFKG 163 (268)
T ss_pred ecccCCCceeE
Confidence 34455544433
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.21 E-value=0.00057 Score=50.60 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=35.2
Q ss_pred ccCCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhC--CCCCceEEEEEecCCCCC
Q psy15004 7 NYETPHGFIIVYSTID-LASFHVAEQCLQALWKKD--SIRSKAVILVANKTDLVR 58 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~-~~s~~~~~~~~~~l~~~~--~~~~~piilvgNK~Dl~~ 58 (167)
|...+.++|||.|.+. +..+.++.+++-.+.... ....+|++++.||.|+..
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 5778999999999974 556666665555543221 245789999999999864
No 290
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.20 E-value=0.0009 Score=52.59 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=34.5
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
+..+++.+|++|+|+|.++...-+. ...+..+.. .++|++++.||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 4567899999999999976322121 223333332 3689999999999864
No 291
>KOG1191|consensus
Probab=97.20 E-value=0.0011 Score=55.71 Aligned_cols=104 Identities=20% Similarity=0.165 Sum_probs=64.7
Q ss_pred hcccCCCcEEEEEEeC--CCHHHHHHHHHHHHHHHhhC-----CCCCceEEEEEecCCCCCc-cccChhHHHHHHHhcC-
Q psy15004 5 IANYETPHGFIIVYST--IDLASFHVAEQCLQALWKKD-----SIRSKAVILVANKTDLVRC-RVVTDEDGKDMATAYD- 75 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~--t~~~s~~~~~~~~~~l~~~~-----~~~~~piilvgNK~Dl~~~-~~v~~~~~~~~~~~~~- 75 (167)
..-.+.||++++|+|. ++-.+-..+.+.+....... .....|++++.||+|+... .+.... ...+....+
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccC
Confidence 3446789999999999 44433334444444432110 1134689999999999754 222211 111111122
Q ss_pred --C-eEEEEecCCCCCHHHHHHHHHHHHHhhhCCCCC
Q psy15004 76 --C-KFIETSVGINHNVDELLVGILTQIRLKLDNPPE 109 (167)
Q Consensus 76 --~-~~~e~SA~~~~~v~~lf~~l~~~i~~~~~~~~~ 109 (167)
+ ...++|+++++|++.+...+...+......+..
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s 458 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHS 458 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCC
Confidence 2 456799999999999999999988876654433
No 292
>PLN03126 Elongation factor Tu; Provisional
Probab=97.18 E-value=0.0014 Score=55.49 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=47.1
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccC---hhHHHHHHHhc-----CCeE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVT---DEDGKDMATAY-----DCKF 78 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~-----~~~~ 78 (167)
+..+|++|+|+|.++-..-+ ..+++..+... ++| +|++.||+|+.+..... .++...+.... ++++
T Consensus 165 ~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ 239 (478)
T PLN03126 165 AAQMDGAILVVSGADGPMPQ-TKEHILLAKQV----GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPI 239 (478)
T ss_pred HhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 45789999999987632222 23344444332 577 78899999997532211 12334444443 4589
Q ss_pred EEEecCCCCC
Q psy15004 79 IETSVGINHN 88 (167)
Q Consensus 79 ~e~SA~~~~~ 88 (167)
+.+||.+|.+
T Consensus 240 vp~Sa~~g~n 249 (478)
T PLN03126 240 ISGSALLALE 249 (478)
T ss_pred EEEEcccccc
Confidence 9999998854
No 293
>KOG1532|consensus
Probab=97.16 E-value=0.0071 Score=47.67 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=54.9
Q ss_pred cEEEEEEeC---CCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC----h----hHHHH---------HH
Q psy15004 12 HGFIIVYST---IDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT----D----EDGKD---------MA 71 (167)
Q Consensus 12 d~~i~v~d~---t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~----~----~~~~~---------~~ 71 (167)
-++++|.|. +++.+|-.-.-+.--|. .....|.|+|.||+|+.+..-.. . .++.. +.
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSil---yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~ 225 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSIL---YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLT 225 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHH---HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhh
Confidence 366778776 34666654332322221 12478999999999997642110 0 01110 00
Q ss_pred -------Hh--cCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 72 -------TA--YDCKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 72 -------~~--~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
.+ .++..+-+|+.+|.|.+++|..+-..+-+..
T Consensus 226 ~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 226 RSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred hhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 01 1457889999999999999998887776544
No 294
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.12 E-value=0.0011 Score=52.58 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=38.8
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhc--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
..+-++|.||+||........+......+.. ..+++++||++|.|++++.++|..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999642211122233333332 4689999999999999999998764
No 295
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.06 E-value=0.0019 Score=57.06 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=36.3
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
+..+++.+|++|+|+|.++....+... ++..+.. .++|+++|+||+|+..
T Consensus 92 ~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 92 VERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred HHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCCC
Confidence 456789999999999998754444333 3333432 3689999999999874
No 296
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.03 E-value=0.0012 Score=48.45 Aligned_cols=44 Identities=27% Similarity=0.273 Sum_probs=28.2
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 12 d~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
|++++|.|..++.+..+ ..+.+.+. . ...+.|+|+|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l-~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-Q-AGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-h-ccCCCCEEEEEehhhcCC
Confidence 78999999987643221 22333321 1 113579999999999965
No 297
>PRK12739 elongation factor G; Reviewed
Probab=97.03 E-value=0.0044 Score=54.89 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=34.4
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
+..+++.+|++|+|+|.++...-+.. ..+..+.. .++|+|++.||+|+..
T Consensus 90 ~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 90 VERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 45678899999999999874333322 23333322 3689999999999863
No 298
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.98 E-value=0.0078 Score=50.95 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=45.9
Q ss_pred CceEEEEEecCCCCC----ccc-------cChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 44 SKAVILVANKTDLVR----CRV-------VTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 44 ~~piilvgNK~Dl~~----~~~-------v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++|++||.+|+|... +.. +.....+.+|-.+|+..|.||++...|++-++..|...+...
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 379999999999632 111 112345667788999999999999999999999988887653
No 299
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.98 E-value=0.0082 Score=46.19 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=59.0
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHH---HHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cC----hhHHHHHHHhcC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHV---AEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VT----DEDGKDMATAYD 75 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~---~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~----~~~~~~~~~~~~ 75 (167)
...|++++++|||+|+.+.+-.++ ....+..+.+. .+++.+.+...|+|+..+.. .. .+.....+...+
T Consensus 71 ~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~ 148 (232)
T PF04670_consen 71 EEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG 148 (232)
T ss_dssp HHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456899999999999984433333 34445555444 46889999999999864321 11 122233334445
Q ss_pred ---CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 76 ---CKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 76 ---~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+.|+.||.-+ +.+-+.|-.+++.+.-
T Consensus 149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 149 IEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp -TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred ccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 7899999876 6888888888776654
No 300
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.005 Score=49.98 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=47.8
Q ss_pred CCcEEEEEEeCCCHHHHHHHH--HHHHHHHhhCCCCCceEEEEEecCCCCCccccCh----hHHHHHHHhcCC---eEEE
Q psy15004 10 TPHGFIIVYSTIDLASFHVAE--QCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD----EDGKDMATAYDC---KFIE 80 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~--~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~----~~~~~~~~~~~~---~~~e 80 (167)
.||++|++.|.-. .-.+... .++..+.. . ..+|+..||+||.+-.+-.. ++-..|+.++++ .|++
T Consensus 109 TadlAIlLVDAR~-Gvl~QTrRHs~I~sLLG---I--rhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IP 182 (431)
T COG2895 109 TADLAILLVDARK-GVLEQTRRHSFIASLLG---I--RHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIP 182 (431)
T ss_pred cccEEEEEEecch-hhHHHhHHHHHHHHHhC---C--cEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEe
Confidence 5899999999732 1222211 12333321 1 25888899999986433222 334557777775 7999
Q ss_pred EecCCCCCHHH
Q psy15004 81 TSVGINHNVDE 91 (167)
Q Consensus 81 ~SA~~~~~v~~ 91 (167)
+||+.|.||-.
T Consensus 183 iSAl~GDNV~~ 193 (431)
T COG2895 183 ISALLGDNVVS 193 (431)
T ss_pred chhccCCcccc
Confidence 99999998743
No 301
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.79 E-value=0.0034 Score=53.87 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=34.7
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFH-VAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~-~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
+..+++.+|++|+|+|.++. ++ ....++..... .++|+++++||+|+..
T Consensus 97 ~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 97 TYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEECccccC
Confidence 45678899999999999873 22 22334443322 3689999999999853
No 302
>KOG0082|consensus
Probab=96.76 E-value=0.0091 Score=48.56 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=66.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHH--HH--------HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc----------
Q psy15004 2 EECIANYETPHGFIIVYSTIDLA--SF--------HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---------- 61 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~--s~--------~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---------- 61 (167)
..+...|++++++|||.++++=+ .+ .+-....+.|-...--.+.++||..||.||-.+..
T Consensus 210 rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fp 289 (354)
T KOG0082|consen 210 KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFP 289 (354)
T ss_pred hhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCc
Confidence 46778999999999999997622 11 12233445554444446789999999999843211
Q ss_pred ----c-ChhHHHHHHHh----------cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 62 ----V-TDEDGKDMATA----------YDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 62 ----v-~~~~~~~~~~~----------~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
. ..+++..+... ..+-+..|.|.+-.+|+.+|..+...|...
T Consensus 290 dy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 290 DYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred CCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 1 12333333221 123455678888899999999999888764
No 303
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.73 E-value=0.006 Score=50.28 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=62.7
Q ss_pred ChhhhcccCCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc-----c-----
Q psy15004 1 PEECIANYETPHGFIIVYSTIDL----------ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC-----R----- 60 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~----------~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~-----~----- 60 (167)
|..|..||.+++++|||.++++= ..+.+.....+.+.......+.|+||+.||.|+-.+ .
T Consensus 250 RkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~ 329 (389)
T PF00503_consen 250 RKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKY 329 (389)
T ss_dssp GGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGT
T ss_pred hhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhh
Confidence 46789999999999999998531 234444556666655444468999999999997311 0
Q ss_pred ------c--cChhHHHHHHHh------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 61 ------V--VTDEDGKDMATA------------YDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 61 ------~--v~~~~~~~~~~~------------~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
. -..+.+..+... ..+.+..|+|.+..++..+|..+.+.|
T Consensus 330 fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 330 FPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp STTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 0 011233333221 112355788888888888888776543
No 304
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.016 Score=48.19 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc---CCeEEEEe
Q psy15004 9 ETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY---DCKFIETS 82 (167)
Q Consensus 9 ~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~---~~~~~e~S 82 (167)
...|.+++|.|.++ +.+-|.+. .++.+ .-...++|.||+|..++..+. +...++.... +.++|.+|
T Consensus 72 ~~~d~alLvV~~deGl~~qtgEhL~-iLdll------gi~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s 143 (447)
T COG3276 72 GGIDYALLVVAADEGLMAQTGEHLL-ILDLL------GIKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTS 143 (447)
T ss_pred cCCceEEEEEeCccCcchhhHHHHH-HHHhc------CCCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccc
Confidence 36789999999864 34444322 22222 122468999999998654321 2222222222 35789999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
+.+|.||+++.+.|.....
T Consensus 144 ~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 144 AKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccCCCHHHHHHHHHHhhh
Confidence 9999999999999998883
No 305
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.43 E-value=0.021 Score=47.64 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=54.2
Q ss_pred cccC-CCcEEEEEE-eCC--C--HHHHHH-HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeE
Q psy15004 6 ANYE-TPHGFIIVY-STI--D--LASFHV-AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKF 78 (167)
Q Consensus 6 ~y~~-~ad~~i~v~-d~t--~--~~s~~~-~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~ 78 (167)
..+. .+|..|+|. |.+ + ++.+.. -..|+.++... ++|+|+|.||+|-.... +.+....+...++.++
T Consensus 139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~----~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpv 212 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL----NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPV 212 (492)
T ss_pred HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc----CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCce
Confidence 3344 789999998 663 1 122333 26688888654 78999999999932211 2334456667788888
Q ss_pred EEEecCCC--CCHHHHHHHHHH
Q psy15004 79 IETSVGIN--HNVDELLVGILT 98 (167)
Q Consensus 79 ~e~SA~~~--~~v~~lf~~l~~ 98 (167)
+.+|+..- ..|..++..++-
T Consensus 213 l~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 213 LAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred EEEEHHHcCHHHHHHHHHHHHh
Confidence 88887532 344444444433
No 306
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.42 E-value=0.014 Score=44.46 Aligned_cols=77 Identities=13% Similarity=0.006 Sum_probs=43.9
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccc-cC--hhHHHH-HHHhc--CCeEE
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRV-VT--DEDGKD-MATAY--DCKFI 79 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~-v~--~~~~~~-~~~~~--~~~~~ 79 (167)
..+.+|++++|+|.+....... ..++..+... +.| +|+|.||+|+.+... .. ..+.+. +.... +.+++
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~----g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~ 174 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMET-FEFLNILQVH----GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF 174 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc----CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 3567999999999875432222 2233334222 456 455999999863221 11 111111 22221 45899
Q ss_pred EEecCCCCC
Q psy15004 80 ETSVGINHN 88 (167)
Q Consensus 80 e~SA~~~~~ 88 (167)
.+||++...
T Consensus 175 ~iSa~~~~~ 183 (225)
T cd01882 175 YLSGIVHGR 183 (225)
T ss_pred EEeeccCCC
Confidence 999998854
No 307
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.34 E-value=0.0091 Score=47.08 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=44.3
Q ss_pred cccCC--CcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc--cccChhHHHHHHHhcCCeEEE
Q psy15004 6 ANYET--PHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC--RVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 6 ~y~~~--ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~~~~~e 80 (167)
.++.+ +|+++++++.+.. .+... ...+..+. ..+|+|+|+||+|+... .........+.+..+++++|.
T Consensus 108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 108 PRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred ccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceEC
Confidence 34554 6667777766542 12111 33344442 25899999999998652 222345566677788998887
Q ss_pred EecC
Q psy15004 81 TSVG 84 (167)
Q Consensus 81 ~SA~ 84 (167)
....
T Consensus 182 ~~~~ 185 (276)
T cd01850 182 FPED 185 (276)
T ss_pred CCCC
Confidence 6653
No 308
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.29 E-value=0.0091 Score=48.15 Aligned_cols=82 Identities=20% Similarity=0.083 Sum_probs=55.8
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
..+....|+++.|.|+-++.+.... -++++. .+.|.++|+||+||.+.. +.......+....+...+.+++.
T Consensus 29 ~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v-----~~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~~~~~~~v~~~ 100 (322)
T COG1161 29 KEVLKSVDVVVEVVDARDPLGTRNP--ELERIV-----KEKPKLLVLNKADLAPKE-VTKKWKKYFKKEEGIKPIFVSAK 100 (322)
T ss_pred HHhcccCCEEEEEEeccccccccCc--cHHHHH-----ccCCcEEEEehhhcCCHH-HHHHHHHHHHhcCCCccEEEEee
Confidence 3567789999999999998765432 223332 234569999999997633 34445555666656777888888
Q ss_pred CCCCHHHHHH
Q psy15004 85 INHNVDELLV 94 (167)
Q Consensus 85 ~~~~v~~lf~ 94 (167)
.+.++..+..
T Consensus 101 ~~~~~~~i~~ 110 (322)
T COG1161 101 SRQGGKKIRK 110 (322)
T ss_pred cccCccchHH
Confidence 8887666653
No 309
>KOG1424|consensus
Probab=96.28 E-value=0.011 Score=50.04 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=49.8
Q ss_pred ccCCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 7 NYETPHGFIIVYSTIDLASFH--VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~--~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
.++.+|++|.+.|+-++--|. ++..++.++. +..-.+|+.||+||....++. .-..+..+.+++|+.-||.
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~qr~--aWa~YF~~~ni~~vf~SA~ 243 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQRV--AWAEYFRQNNIPVVFFSAL 243 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHHHH--HHHHHHHhcCceEEEEecc
Confidence 456799999999999986664 4555665552 245688999999997543321 1122344557899999998
Q ss_pred C
Q psy15004 85 I 85 (167)
Q Consensus 85 ~ 85 (167)
.
T Consensus 244 ~ 244 (562)
T KOG1424|consen 244 A 244 (562)
T ss_pred c
Confidence 7
No 310
>KOG4273|consensus
Probab=96.23 E-value=0.014 Score=45.43 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=60.9
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc------------------cc---------c-
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC------------------RV---------V- 62 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------------~~---------v- 62 (167)
..++++|||++....+..+..|+..-.-. .-+ .++.+|||+|.... +. +
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htdin--sfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgis 155 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTDIN--SFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGIS 155 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhccccccc--cch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccc
Confidence 35899999999999999999997643111 112 35778999996311 00 0
Q ss_pred ----------------ChhHHHHHHHhcCCeEEEEecCCC------------CCHHHHHHHHHHHHHh
Q psy15004 63 ----------------TDEDGKDMATAYDCKFIETSVGIN------------HNVDELLVGILTQIRL 102 (167)
Q Consensus 63 ----------------~~~~~~~~~~~~~~~~~e~SA~~~------------~~v~~lf~~l~~~i~~ 102 (167)
....+.+|+.++|+.|+|.+|.+. .||+.+|..|-..+..
T Consensus 156 etegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 156 ETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred ccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 012345678888999999999543 4788899888776643
No 311
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.011 Score=48.88 Aligned_cols=82 Identities=18% Similarity=0.106 Sum_probs=48.5
Q ss_pred cCCCcEEEEEEeCCCHHHHHH------HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh----hHHHHHHHhcC--
Q psy15004 8 YETPHGFIIVYSTIDLASFHV------AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD----EDGKDMATAYD-- 75 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~------~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~----~~~~~~~~~~~-- 75 (167)
..+||++|+|.|..+. .|+. .......|....+ =-.+|++.||+|+.+-.+-.. .+...+.+..|
T Consensus 106 asqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~ 182 (428)
T COG5256 106 ASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYN 182 (428)
T ss_pred hhhccEEEEEEECCCC-ccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCC
Confidence 4579999999998774 2221 1111111211111 125888899999985322111 22233555554
Q ss_pred ---CeEEEEecCCCCCHHHH
Q psy15004 76 ---CKFIETSVGINHNVDEL 92 (167)
Q Consensus 76 ---~~~~e~SA~~~~~v~~l 92 (167)
.+|+++||..|.|+.+.
T Consensus 183 ~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 183 PKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccCCeEEecccccCCccccc
Confidence 46999999999998764
No 312
>KOG2423|consensus
Probab=96.14 E-value=0.033 Score=46.06 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=59.1
Q ss_pred cCCCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 8 YETPHGFIIVYSTIDLAS--FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s--~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
+..+|++|-|.|.-||.. -..++.++.+ ..+...+|+|.||+||.. .-++......+.+++..--|..|.-+
T Consensus 211 iDSSDVvvqVlDARDPmGTrc~~ve~ylkk-----e~phKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTiAfHAsi~n 284 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRCKHVEEYLKK-----EKPHKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTIAFHASINN 284 (572)
T ss_pred hcccceeEEeeeccCCcccccHHHHHHHhh-----cCCcceeEEEeecccccc-HHHHHHHHHHHhhhCcceeeehhhcC
Confidence 467899999999988742 2334444333 235678999999999975 33455566667777665566677667
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy15004 86 NHNVDELLVGILTQIRLK 103 (167)
Q Consensus 86 ~~~v~~lf~~l~~~i~~~ 103 (167)
..|-..++..|-+.....
T Consensus 285 sfGKgalI~llRQf~kLh 302 (572)
T KOG2423|consen 285 SFGKGALIQLLRQFAKLH 302 (572)
T ss_pred ccchhHHHHHHHHHHhhc
Confidence 777666655444444333
No 313
>KOG1144|consensus
Probab=96.06 E-value=0.03 Score=49.57 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=57.6
Q ss_pred cccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc-----------------cC--
Q psy15004 6 ANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV-----------------VT-- 63 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~-----------------v~-- 63 (167)
..-.-||.+|+|.|+.. +.+.+.+. .|+. .+.|+|+..||+|..-... +.
T Consensus 559 rgsslC~~aIlvvdImhGlepqtiESi~----lLR~----rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 559 RGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred ccccccceEEEEeehhccCCcchhHHHH----HHHh----cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 34456899999999964 44555432 3322 3789999999999642110 00
Q ss_pred -----hhHHHHHHHh-cC-------------CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 64 -----DEDGKDMATA-YD-------------CKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 64 -----~~~~~~~~~~-~~-------------~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
.....+|+.+ ++ +..++|||.+|+||-+|+.+|++.....+
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0111122221 11 24678999999999999999998776554
No 314
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.06 E-value=0.098 Score=38.41 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCH
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNV 89 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v 89 (167)
..|.|+|++|.+...|++.++.=+..+...... -.+.++++-..-.+...+...+..+++..+.++++.+--.+..+.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl--GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~ 141 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFL--GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR 141 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhc--cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence 368999999999999999887766655322111 235666666665565677888999999999999998877777776
Q ss_pred HHHHHHHHHHHHh
Q psy15004 90 DELLVGILTQIRL 102 (167)
Q Consensus 90 ~~lf~~l~~~i~~ 102 (167)
..+-+.|++.+.-
T Consensus 142 ~~lAqRLL~~lqi 154 (176)
T PF11111_consen 142 TSLAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.98 E-value=0.018 Score=44.54 Aligned_cols=53 Identities=13% Similarity=-0.059 Sum_probs=34.4
Q ss_pred hhhhcccCC-CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 2 EECIANYET-PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 2 ~~~~~y~~~-ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
+++..|+++ .+.+|+|.|.+..-.-++...+...+.. ...|+++|.||+|..+
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~----~~~rti~ViTK~D~~~ 206 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP----QGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH----cCCcEEEEEECCCCCC
Confidence 467889984 5689999987542111122233444422 3679999999999864
No 316
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.97 E-value=0.025 Score=38.08 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=29.6
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
...+..+|++|+|+|.+++.. +...+++.++. .+.|+++|.||
T Consensus 74 ~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 74 LEQISKSDLIIYVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp HHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred HHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence 344578999999999877322 22334445552 37899999998
No 317
>KOG0458|consensus
Probab=95.95 E-value=0.013 Score=50.19 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=48.6
Q ss_pred cCCCcEEEEEEeCCCHHHHHH-------HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHH----HHHH-HhcC
Q psy15004 8 YETPHGFIIVYSTIDLASFHV-------AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG----KDMA-TAYD 75 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~-------~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~----~~~~-~~~~ 75 (167)
.-.||++|+|.|.+. ..|+. ..+....+ +.-+ -.-+|++.||.|+.+-.+-..++. ..|. +..|
T Consensus 276 ~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~ll-r~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~g 351 (603)
T KOG0458|consen 276 ASQADVAVLVVDAST-GEFESGFDPGGQTREHALLL-RSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCG 351 (603)
T ss_pred ccccceEEEEEECCc-chhhhccCCCCchHHHHHHH-HHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcC
Confidence 456899999999864 34442 12222222 2212 235889999999976433222222 2233 3344
Q ss_pred -----CeEEEEecCCCCCHHHH
Q psy15004 76 -----CKFIETSVGINHNVDEL 92 (167)
Q Consensus 76 -----~~~~e~SA~~~~~v~~l 92 (167)
+.|++||+..|+|+-..
T Consensus 352 f~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 352 FKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccCCcceEecccccCCccccc
Confidence 47999999999997544
No 318
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.88 E-value=0.033 Score=43.00 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=42.8
Q ss_pred CCcEEEEEEeCC---CHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc--c----------c-------ChhHH
Q psy15004 10 TPHGFIIVYSTI---DLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR--V----------V-------TDEDG 67 (167)
Q Consensus 10 ~ad~~i~v~d~t---~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~--~----------v-------~~~~~ 67 (167)
..-++|++.|.. ++..|-. .++--+... ..-+.|.|.|.||+|+.... . . .....
T Consensus 122 ~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~-~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~ 198 (238)
T PF03029_consen 122 GRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIM-LRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLN 198 (238)
T ss_dssp ---EEEEEE-GGG-SSHHHHHH--HHHHHHHHH-HHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHH
T ss_pred cceEEEEEEecccccChhhHHH--HHHHHHHHH-hhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 345788899874 3444432 222221110 01268999999999997621 0 0 00011
Q ss_pred HHHHH---hcCC--eEEEEecCCCCCHHHHHHHHHHH
Q psy15004 68 KDMAT---AYDC--KFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 68 ~~~~~---~~~~--~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
..++. +++. .|+.+|+.++.++++++..+-+.
T Consensus 199 ~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 199 EEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 11222 2333 69999999999999998766543
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.88 E-value=0.0052 Score=47.91 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=47.9
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHH----hcCCeEEEEe
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMAT----AYDCKFIETS 82 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~----~~~~~~~e~S 82 (167)
.-+|.+++|.-..--+..+.++.=+-+ +.=|+|.||+|+......-. .....+.. .|.-+++.||
T Consensus 141 ~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 141 DMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp TTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred HhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 347888888876544444433322222 24578889999643221111 11111111 1234899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|.++.||+++++.|.++-...
T Consensus 212 A~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999888765543
No 320
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=95.84 E-value=0.038 Score=46.60 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=58.7
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHHHH-------HhcCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKDMA-------TAYDC 76 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~~~-------~~~~~ 76 (167)
..+.-.|++|++.|..+- ..-+..-.+..... .+.+.|+|.||+|..+.+. |- .+...+. .++++
T Consensus 87 Rvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vv-d~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 87 RVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVV-DEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHH-HHHHHHHHHhCCChhhCCC
Confidence 345568999999998761 11121222333322 2677889999999875442 11 1222222 23567
Q ss_pred eEEEEecCCC----------CCHHHHHHHHHHHHHhhhC
Q psy15004 77 KFIETSVGIN----------HNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 77 ~~~e~SA~~~----------~~v~~lf~~l~~~i~~~~~ 105 (167)
+++..||++| .++.-+|+.|++++.....
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 8999999988 3677888888888765443
No 321
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.78 E-value=0.07 Score=42.55 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHH------hcCCeEEEE
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMAT------AYDCKFIET 81 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~------~~~~~~~e~ 81 (167)
-+|.+++|--..--+..+-++.=+-+ +-=|+|.||.|.......-. ..+..+.. .|.-+++.|
T Consensus 164 ~aDt~~~v~~pg~GD~~Q~iK~GimE---------iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t 234 (323)
T COG1703 164 MADTFLVVMIPGAGDDLQGIKAGIME---------IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTT 234 (323)
T ss_pred hcceEEEEecCCCCcHHHHHHhhhhh---------hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEe
Confidence 46788877655444445544432222 23578889999643211000 11111111 123479999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||..|+|++++++.+.++..-...
T Consensus 235 ~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 235 SALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred eeccCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999887765443
No 322
>PRK00007 elongation factor G; Reviewed
Probab=95.62 E-value=0.047 Score=48.48 Aligned_cols=75 Identities=9% Similarity=-0.007 Sum_probs=43.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC----eEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC----KFIE 80 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~----~~~e 80 (167)
...++.+|++|+|+|.+..-.-+....| ..+.. .++|+|++.||+|+.+.. .......+...++. ..++
T Consensus 93 ~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~----~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 93 ERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK----YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCeeeEEec
Confidence 3456789999999998764333332323 33333 267899999999987532 12222333334333 3456
Q ss_pred EecCCC
Q psy15004 81 TSVGIN 86 (167)
Q Consensus 81 ~SA~~~ 86 (167)
+||..+
T Consensus 166 isa~~~ 171 (693)
T PRK00007 166 IGAEDD 171 (693)
T ss_pred CccCCc
Confidence 666655
No 323
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.50 E-value=0.099 Score=38.02 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=47.8
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
...+..+|.+|++...+ ..+...+..+++.+... +.|+.+|.||+|.... ...+..++.+.+|++++.
T Consensus 109 ~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~~---~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 109 IASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----GIPVGVVINKYDLNDE---IAEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCcc---hHHHHHHHHHHcCCCeEE
Confidence 34567899999999877 44667777777766543 4678899999996432 234566677777877653
No 324
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.42 E-value=0.19 Score=37.12 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=53.0
Q ss_pred cCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC------hhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT------DEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~------~~~~~~~~~~~~~~~~e 80 (167)
..++|++|+|.|+.+.. ....+.+++.++-. ...-.++|+|.|+.|......+. ....+.+.+..+-.|+.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 47899999999987621 12222333333311 11124788999999965432211 12334444554544544
Q ss_pred Ee-----cCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TS-----VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~S-----A~~~~~v~~lf~~l~~~i~~ 102 (167)
.+ +..+.+++++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 43 45667888888887777765
No 325
>KOG0461|consensus
Probab=95.42 E-value=0.075 Score=43.33 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=47.9
Q ss_pred CcEEEEEEeCCCHHHHHHHHH-HHHHHHhhCCCCCceEEEEEecCCCCCcccc---ChhHHHHHHHhc-------CCeEE
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQ-CLQALWKKDSIRSKAVILVANKTDLVRCRVV---TDEDGKDMATAY-------DCKFI 79 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~-~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v---~~~~~~~~~~~~-------~~~~~ 79 (167)
.|..++|+|+..-..-+.++- .+.++. -...|+|.||+|+..+.+- ..+......+.+ +.+++
T Consensus 94 iDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~ 167 (522)
T KOG0461|consen 94 IDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIV 167 (522)
T ss_pred eeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCcee
Confidence 478899999975222122222 233331 1247778899987654221 112222233221 25899
Q ss_pred EEecCCC----CCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGIN----HNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~----~~v~~lf~~l~~~i~~ 102 (167)
++||+.| +++.++.+.|-.++.+
T Consensus 168 ~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 168 EVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred EEecCCCccchhHHHHHHHHHHHhhcC
Confidence 9999999 5666666555555554
No 326
>KOG0410|consensus
Probab=95.32 E-value=0.017 Score=46.55 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=56.0
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce----EEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p----iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
-...||.+|.|.|++.|+--+.....+.-+... +.+..| +|=|-||+|...... .. ..++ .+.+|
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~-e~-------E~n~--~v~is 322 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEV-EE-------EKNL--DVGIS 322 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccC-cc-------ccCC--ccccc
Confidence 356799999999999987555544444444333 223333 566788888754221 11 1222 57789
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|+|++++...+-..+...
T Consensus 323 altgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred cccCccHHHHHHHHHHHhhhh
Confidence 999999999988777666543
No 327
>KOG2484|consensus
Probab=95.06 E-value=0.045 Score=45.13 Aligned_cols=72 Identities=22% Similarity=0.146 Sum_probs=45.1
Q ss_pred cCCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 8 YETPHGFIIVYSTIDLASFH--VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~--~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
.+.+|++|.|.|.-||.+-. +++.|+-+. ..+.-.|+|.||+||.. +++-......+..++..-.|-+|...
T Consensus 144 ve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----~gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~~ptv~fkast~~ 217 (435)
T KOG2484|consen 144 VEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----HGNKKLILVLNKIDLVP-REVVEKWLVYLRREGPTVAFKASTQM 217 (435)
T ss_pred HhhhheEEEeeeccCCCCCCChhHHHHHHhc-----cCCceEEEEeehhccCC-HHHHHHHHHHHHhhCCcceeeccccc
Confidence 45689999999999987543 345554332 12478999999999975 33334444445555443444444433
No 328
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.06 E-value=0.035 Score=46.09 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHH-HHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDE-LLVGILTQI 100 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~-lf~~l~~~i 100 (167)
...|+|+|.||+|+..... ....+....+..++.+||+.+.++++ +.+.+++.+
T Consensus 216 t~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 3589999999999753211 12222222244789999999999988 555555544
No 329
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=95.01 E-value=0.14 Score=40.17 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCcEEEEEEeCCC-----HH--HHHH-HHH---HHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHHHHHhcCC
Q psy15004 10 TPHGFIIVYSTID-----LA--SFHV-AEQ---CLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKDMATAYDC 76 (167)
Q Consensus 10 ~ad~~i~v~d~t~-----~~--s~~~-~~~---~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~~~~~~~~ 76 (167)
-.+|+|+++|+.+ .+ .+.. ... -+.++.+. -.-.+||.+|.||+|+...-. ...-......+-+|+
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~-lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~ 103 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRT-LGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGF 103 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHH-hCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCccc
Confidence 3689999999954 11 1221 222 33344332 235799999999999875311 011111222344566
Q ss_pred eEEEEecCCCCC---HHHHHHHHHHHHHhh
Q psy15004 77 KFIETSVGINHN---VDELLVGILTQIRLK 103 (167)
Q Consensus 77 ~~~e~SA~~~~~---v~~lf~~l~~~i~~~ 103 (167)
.+-......+.. +++.|+.+...+...
T Consensus 104 t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 133 (266)
T PF14331_consen 104 TFPYDEDADGDAWAWFDEEFDELVARLNAR 133 (266)
T ss_pred ccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 544333444444 777777777766543
No 330
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.083 Score=42.20 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccC---hhHHHHHHHhcCC-----e
Q psy15004 10 TPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVT---DEDGKDMATAYDC-----K 77 (167)
Q Consensus 10 ~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~~-----~ 77 (167)
+.|+.|+|.+.+| |.+-+.+. ..++ -++| ++++.||+|+.++.+.. ..+.+.+...+++ +
T Consensus 98 qmDgAILVVsA~dGpmPqTrEHiL----larq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~P 169 (394)
T COG0050 98 QMDGAILVVAATDGPMPQTREHIL----LARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTP 169 (394)
T ss_pred hcCccEEEEEcCCCCCCcchhhhh----hhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 5799999999998 44444321 1111 2454 56668999998755432 2456667777765 4
Q ss_pred EEEEecC
Q psy15004 78 FIETSVG 84 (167)
Q Consensus 78 ~~e~SA~ 84 (167)
++.-||+
T Consensus 170 ii~gSal 176 (394)
T COG0050 170 IIRGSAL 176 (394)
T ss_pred eeechhh
Confidence 5655654
No 331
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.71 E-value=0.038 Score=49.30 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=33.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..+++.+|++|+|+|.++.-..+....|. .+.. .++|+++|+||+|..
T Consensus 102 ~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 102 DVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK----ENVKPVLFINKVDRL 151 (720)
T ss_pred HHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH----cCCCEEEEEEChhcc
Confidence 3567889999999999997632222222232 2222 357889999999985
No 332
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.85 E-value=0.35 Score=38.09 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=48.0
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
..+.+||.+|+|-..| +..+.+++..++.+... ++|..+|.||.++.. .+.+.++.+.|++++
T Consensus 181 ~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f----~ip~~iViNr~~~g~------s~ie~~~~e~gi~il 243 (284)
T COG1149 181 ASLKGADLAILVTEPT-PFGLHDLKRALELVEHF----GIPTGIVINRYNLGD------SEIEEYCEEEGIPIL 243 (284)
T ss_pred HhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh----CCceEEEEecCCCCc------hHHHHHHHHcCCCee
Confidence 3467899999998877 56777777777766544 799999999997543 266778888887665
No 333
>KOG0466|consensus
Probab=93.76 E-value=0.066 Score=42.97 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=43.0
Q ss_pred eEEEEEecCCCCCcccc--ChhHHHHHHHh---cCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 46 AVILVANKTDLVRCRVV--TDEDGKDMATA---YDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 46 piilvgNK~Dl~~~~~v--~~~~~~~~~~~---~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.++++.||+||..+.+- ..++.+.|.+. .+++++++||.-+.|++-+.+.++..|..
T Consensus 181 hiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred eEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 58999999999754332 12344455543 36799999999999999999999988764
No 334
>PTZ00416 elongation factor 2; Provisional
Probab=92.45 E-value=0.17 Score=45.94 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=33.0
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
...++.+|++|+|+|.++.-..+. ...+..+.. .++|+|++.||+|+.
T Consensus 110 ~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 110 TAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred HHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 345678999999999887433232 223344432 258999999999986
No 335
>KOG3886|consensus
Probab=91.91 E-value=0.57 Score=36.31 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=46.3
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHH---HHHHHhhCCCCCceEEEEEecCCCCCc--cccChh----HHHHHHHhcCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQC---LQALWKKDSIRSKAVILVANKTDLVRC--RVVTDE----DGKDMATAYDC 76 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~---~~~l~~~~~~~~~piilvgNK~Dl~~~--~~v~~~----~~~~~~~~~~~ 76 (167)
..|++.+++|+|||+...+--.++..+ ++.+.+ +.+...+.+...|.||... +++... ....+....++
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~ 154 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLEC 154 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccc
Confidence 357789999999999886544444433 334433 3456778899999999743 222111 11222223455
Q ss_pred eEEEEecC
Q psy15004 77 KFIETSVG 84 (167)
Q Consensus 77 ~~~e~SA~ 84 (167)
.++.+|.-
T Consensus 155 ~~f~Tsiw 162 (295)
T KOG3886|consen 155 KCFPTSIW 162 (295)
T ss_pred cccccchh
Confidence 67777764
No 336
>KOG0099|consensus
Probab=91.81 E-value=0.54 Score=37.10 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=39.4
Q ss_pred hhhhcccCCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 2 EECIANYETPHGFIIVYSTID----------LASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~----------~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
..+...|.+.-++|||...+. ...+++.......+|...-...+.+||..||.|+
T Consensus 217 rKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 217 RKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred hhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 456778899999999987643 2233444445666666554567889999999998
No 337
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=91.59 E-value=0.29 Score=44.59 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=32.5
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
..++.+|++|+|+|.+..-.......| ..+.. .++|+|++.||+|+.
T Consensus 117 ~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 117 AALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred HHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH----CCCCEEEEEECCccc
Confidence 345789999999998864333332333 33332 368999999999986
No 338
>KOG0468|consensus
Probab=91.50 E-value=0.21 Score=44.02 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=34.0
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
+..-++-+|++++|+|+..--.+.. +..++... ..+.|+++|.||+|.
T Consensus 214 ~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 214 TTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred HHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHH
Confidence 4455788999999999976544442 33333332 247899999999995
No 339
>PRK07560 elongation factor EF-2; Reviewed
Probab=91.27 E-value=0.25 Score=44.24 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=32.1
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
....++.+|++|+|+|....-.-+....|. ..... ++|.|++.||+|+.
T Consensus 104 ~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 104 VTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc----CCCeEEEEECchhh
Confidence 345678899999999987642222223333 22222 46789999999975
No 340
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=91.22 E-value=0.56 Score=38.97 Aligned_cols=56 Identities=21% Similarity=0.161 Sum_probs=34.0
Q ss_pred CceEEEEEecCCCCCccccC----------------------hhHH--HHHHHhcC---CeEEEEecCCCCCHHHHHHHH
Q psy15004 44 SKAVILVANKTDLVRCRVVT----------------------DEDG--KDMATAYD---CKFIETSVGINHNVDELLVGI 96 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~----------------------~~~~--~~~~~~~~---~~~~e~SA~~~~~v~~lf~~l 96 (167)
..|+|+|.+|+|+.++..+. .... ...+-+.+ .|+|.+|+.+|+|++-+ +++
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~ 333 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEF 333 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHH
Confidence 68999999999997542111 0111 01111222 38999999999998744 444
Q ss_pred HHHH
Q psy15004 97 LTQI 100 (167)
Q Consensus 97 ~~~i 100 (167)
...+
T Consensus 334 f~~L 337 (527)
T COG5258 334 FLLL 337 (527)
T ss_pred HHhC
Confidence 4444
No 341
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=91.10 E-value=3.1 Score=30.44 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=57.6
Q ss_pred cCCCcEEEEEEeCCCH-------HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDL-------ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~-------~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
++....=.+|+|.++- +-..++..|+.++++... .--+++|-|-+-..+ ....+++..+.+.+|++++.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~--~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~ 111 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFG--KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLR 111 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCC--CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEE
Confidence 4556666778888661 122467889999876521 125889999864332 23457888899999999998
Q ss_pred EecCCCCCHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGI 96 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l 96 (167)
-+++...+.+++...+
T Consensus 112 h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 112 HRAKKPGCFREILKYF 127 (168)
T ss_pred eCCCCCccHHHHHHHH
Confidence 8888876666655544
No 342
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=91.09 E-value=2.1 Score=37.11 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=57.3
Q ss_pred cccCCCcEEEEEEeCC----------------C----HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChh
Q psy15004 6 ANYETPHGFIIVYSTI----------------D----LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE 65 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t----------------~----~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~ 65 (167)
..--..|++++|-.+. | ...|.++..-++.++.+ ++|++++.||.|...+.+ .+
T Consensus 318 ~~gl~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~F----GvPvVVAINKFd~DTe~E--i~ 391 (557)
T PRK13505 318 KAGLKPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKF----GVPVVVAINKFVTDTDAE--IA 391 (557)
T ss_pred cCCCCCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEEeCCCCCCHHH--HH
Confidence 3334578888887441 1 12345555555666443 899999999999854333 35
Q ss_pred HHHHHHHhcCCeEEEEec--CCCCCHHHHHHHHHHHHH
Q psy15004 66 DGKDMATAYDCKFIETSV--GINHNVDELLVGILTQIR 101 (167)
Q Consensus 66 ~~~~~~~~~~~~~~e~SA--~~~~~v~~lf~~l~~~i~ 101 (167)
..++++.+.|+++..+.+ +-|.|-.++-+.+++.+.
T Consensus 392 ~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 392 ALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 677889999998775443 445566666666665554
No 343
>COG3596 Predicted GTPase [General function prediction only]
Probab=90.64 E-value=1.1 Score=35.56 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=62.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc--------ccC-------hhHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR--------VVT-------DEDG 67 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~--------~v~-------~~~~ 67 (167)
+...|+...|.++++.+..|++---+ .+++.++... ..+.+++++.|.+|..... .-+ .+.+
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 34567788999999999988742222 3344555333 2357999999999975321 111 1111
Q ss_pred HHHHHhc--CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 68 KDMATAY--DCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 68 ~~~~~~~--~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
....+.+ =.+++..|+..+.|++++...+++.+...
T Consensus 187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 1111111 13778888899999999999999888743
No 344
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=90.64 E-value=2.4 Score=32.87 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=31.3
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCC-ceEEEEEecCCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRS-KAVILVANKTDL 56 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~-~piilvgNK~Dl 56 (167)
..+++|.+|+|.|.+. .|+...++..+...+. + .++.+|.||.|-
T Consensus 152 ~~~~vD~vivVvDpS~-~sl~taeri~~L~~el----g~k~i~~V~NKv~e 197 (255)
T COG3640 152 TIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL----GIKRIFVVLNKVDE 197 (255)
T ss_pred cccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh----CCceEEEEEeeccc
Confidence 4578999999999875 4666555443333222 3 589999999994
No 345
>KOG0460|consensus
Probab=89.85 E-value=1.3 Score=36.35 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=42.1
Q ss_pred CCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc---ChhHHHHHHHhcCC-----eE
Q psy15004 10 TPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV---TDEDGKDMATAYDC-----KF 78 (167)
Q Consensus 10 ~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v---~~~~~~~~~~~~~~-----~~ 78 (167)
+-|++|+|...+| |.+-+.+. ..++. .. ..+++..||.|+.++.+. -+-+.+++...+|+ |+
T Consensus 140 qMDGaILVVaatDG~MPQTrEHlL----LArQV-GV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv 212 (449)
T KOG0460|consen 140 QMDGAILVVAATDGPMPQTREHLL----LARQV-GV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV 212 (449)
T ss_pred ccCceEEEEEcCCCCCcchHHHHH----HHHHc-CC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe
Confidence 4699999999999 33333321 11122 11 246777899999854432 23456677777764 56
Q ss_pred EEEec---CCC
Q psy15004 79 IETSV---GIN 86 (167)
Q Consensus 79 ~e~SA---~~~ 86 (167)
+.=|| +.|
T Consensus 213 I~GSAL~ALeg 223 (449)
T KOG0460|consen 213 IRGSALCALEG 223 (449)
T ss_pred eecchhhhhcC
Confidence 65444 555
No 346
>KOG1954|consensus
Probab=88.57 E-value=0.43 Score=39.41 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=34.9
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC 59 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~ 59 (167)
+.=|...+|.||++||...-+--++.+..+..++.+ .-.+-+|.||+|..+.
T Consensus 175 ~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 175 LEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQVDT 226 (532)
T ss_pred HHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEeccccccCH
Confidence 445667899999999986544334445556666433 3356677899998654
No 347
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=84.97 E-value=4.8 Score=33.13 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=43.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
-+..|+.++|-+++|.+.+ -.+....+++++.+.+. ...+.+..+|.||.+-.
T Consensus 232 ~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~-r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 232 WTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRL-RPNDPKPILVLNRVGVP 284 (366)
T ss_pred HHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHh-CCCCCCceEEeeecCCC
Confidence 4667889999999999976 45888889999999776 44577889999999864
No 348
>KOG0447|consensus
Probab=84.71 E-value=2.5 Score=36.89 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=43.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT 72 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~ 72 (167)
.++..|+.+.+++|+|+--.. .+.-......+.....+.+...|+|.+|+||.+...-.+...+.+..
T Consensus 440 ~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 440 SISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred HHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 367889999999999985432 22212222233333345577899999999998765555555555443
No 349
>PTZ00258 GTP-binding protein; Provisional
Probab=84.32 E-value=2.8 Score=34.84 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCceEEEEEecC--CCCCccccChhHHHHHHHhc-CCeEEEEecCCCC
Q psy15004 43 RSKAVILVANKT--DLVRCRVVTDEDGKDMATAY-DCKFIETSVGINH 87 (167)
Q Consensus 43 ~~~piilvgNK~--Dl~~~~~v~~~~~~~~~~~~-~~~~~e~SA~~~~ 87 (167)
...|+|+|+|+. |+.....-..+....++... +.+++.+||+...
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 457999999999 76211111234445556666 4789999987654
No 350
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=83.46 E-value=4.1 Score=38.69 Aligned_cols=49 Identities=29% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCcEEEEEEeCCCHH-----HH----HHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 9 ETPHGFIIVYSTIDLA-----SF----HVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~-----s~----~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
+-.+|+|+++|+.+-- .. ..+...+.++.+. -.-.+||.||.+|+|+..
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3579999999996521 11 2334455555443 235899999999999864
No 351
>KOG2485|consensus
Probab=83.27 E-value=2.9 Score=33.71 Aligned_cols=86 Identities=19% Similarity=0.072 Sum_probs=49.8
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE--ecC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET--SVG 84 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~--SA~ 84 (167)
-+...|+||=|-|+--|-|-.+ ..++++ ....|-|+|.||+||.+..+ ....++.++.+....|+.. +..
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn--~~~~~~-----~~~k~riiVlNK~DLad~~~-~k~~iq~~~~~~~~~~~~~~c~~~ 114 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRN--ELFQDF-----LPPKPRIIVLNKMDLADPKE-QKKIIQYLEWQNLESYIKLDCNKD 114 (335)
T ss_pred hcccccEEEEeeccccCCcccc--HHHHHh-----cCCCceEEEEecccccCchh-hhHHHHHHHhhcccchhhhhhhhh
Confidence 3567899999999866544332 122222 23678999999999987433 2345555555543344433 333
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15004 85 INHNVDELLVGILTQI 100 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i 100 (167)
...++..++..+....
T Consensus 115 ~~~~v~~l~~il~~~~ 130 (335)
T KOG2485|consen 115 CNKQVSPLLKILTILS 130 (335)
T ss_pred hhhccccHHHHHHHHH
Confidence 4444666665444433
No 352
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=82.59 E-value=2.8 Score=34.48 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCceEEEEEecCCCCCccc-cChhHHHHHHHhcCCeEEEEecCCCC
Q psy15004 43 RSKAVILVANKTDLVRCRV-VTDEDGKDMATAYDCKFIETSVGINH 87 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~-v~~~~~~~~~~~~~~~~~e~SA~~~~ 87 (167)
...|+++|+||.|...... -.......++...+..++.+||..-.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~E~ 250 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAIEL 250 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHHHH
Confidence 4689999999999754221 01245566677777889999996543
No 353
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=82.12 E-value=1.5 Score=39.12 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=31.2
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.-++-+|++|+|+|...--..+.-.-|. +..+ .++|.|++.||+|.
T Consensus 95 rslrvlDgavvVvdaveGV~~QTEtv~r-qa~~----~~vp~i~fiNKmDR 140 (697)
T COG0480 95 RSLRVLDGAVVVVDAVEGVEPQTETVWR-QADK----YGVPRILFVNKMDR 140 (697)
T ss_pred HHHHhhcceEEEEECCCCeeecHHHHHH-HHhh----cCCCeEEEEECccc
Confidence 4456789999999997632223222243 3322 47999999999996
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.81 E-value=9.8 Score=29.92 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=42.8
Q ss_pred CCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTID-LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~-~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
.+|..++|.|.+. .+.+..+..+.+.+ -+.-+|.||.|..... -.+..++...+.|+..++ +|++
T Consensus 190 ~~~~~~LVl~a~~~~~~~~~~~~f~~~~--------~~~g~IlTKlDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~ 255 (272)
T TIGR00064 190 APDEVLLVLDATTGQNALEQAKVFNEAV--------GLTGIILTKLDGTAKG----GIILSIAYELKLPIKFIG--VGEK 255 (272)
T ss_pred CCceEEEEEECCCCHHHHHHHHHHHhhC--------CCCEEEEEccCCCCCc----cHHHHHHHHHCcCEEEEe--CCCC
Confidence 4789999999975 23333332222111 1456778999964321 233444556678887777 7888
Q ss_pred HHHHHH
Q psy15004 89 VDELLV 94 (167)
Q Consensus 89 v~~lf~ 94 (167)
++++-.
T Consensus 256 ~~dl~~ 261 (272)
T TIGR00064 256 IDDLAP 261 (272)
T ss_pred hHhCcc
Confidence 877643
No 355
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=81.05 E-value=5 Score=27.91 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=34.6
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
....+..+|.+|+|.+.+ ..++......++.+.+.. ...++.+|.|+++-
T Consensus 60 ~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 60 VLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 345678899999999876 456666555565654331 34567899999974
No 356
>KOG1143|consensus
Probab=81.00 E-value=14 Score=30.99 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=44.8
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc------------------------cChhH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV------------------------VTDED 66 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~------------------------v~~~~ 66 (167)
.|.+++|.+...--.... .+-+..+... ++|++++.+|+||.+... .+..+
T Consensus 275 Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL----~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~dd 349 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWTT-REHLGLIAAL----NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDD 349 (591)
T ss_pred CceEEEEEEcCCCCcccc-HHHHHHHHHh----CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHH
Confidence 466777777654211111 2223333332 799999999999965311 12233
Q ss_pred HHHHHHh---cCC-eEEEEecCCCCCHHHHH
Q psy15004 67 GKDMATA---YDC-KFIETSVGINHNVDELL 93 (167)
Q Consensus 67 ~~~~~~~---~~~-~~~e~SA~~~~~v~~lf 93 (167)
+...+++ .++ ++|-+|..+|+|++-+.
T Consensus 350 Av~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 350 AVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 3333332 233 88999999999987543
No 357
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=80.75 E-value=6.1 Score=32.00 Aligned_cols=73 Identities=27% Similarity=0.261 Sum_probs=40.6
Q ss_pred CcEEEEEEeCCCHHH-HHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc--CCeEEEEecCCC
Q psy15004 11 PHGFIIVYSTIDLAS-FHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIETSVGIN 86 (167)
Q Consensus 11 ad~~i~v~d~t~~~s-~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SA~~~ 86 (167)
-|++|-|+|...-.. ...+ ....+++. . -=+||.||+||.+... .+..+...++. .++++.++. .+
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~------AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~ 186 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLA-F------ADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY-GD 186 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHH-h------CcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc-cC
Confidence 578999999865322 1112 22334441 1 2467889999987553 22333444444 468888887 33
Q ss_pred CCHHHHH
Q psy15004 87 HNVDELL 93 (167)
Q Consensus 87 ~~v~~lf 93 (167)
....+++
T Consensus 187 ~~~~~ll 193 (323)
T COG0523 187 VDLAELL 193 (323)
T ss_pred CCHHHhh
Confidence 4443333
No 358
>KOG1486|consensus
Probab=79.21 E-value=11 Score=29.91 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=42.0
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
-++.+.|-||+|. ++.++...+|..-+- +-+|+..+.|++.+.+.+..++...
T Consensus 238 Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred EEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhceE
Confidence 4789999999995 457778888886553 4568888899999999999887653
No 359
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.39 E-value=7.3 Score=25.39 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=9.2
Q ss_pred hHHHHHHHhcCCeEEEE
Q psy15004 65 EDGKDMATAYDCKFIET 81 (167)
Q Consensus 65 ~~~~~~~~~~~~~~~e~ 81 (167)
..+...|++.+.+++.+
T Consensus 65 ~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 34555555555555554
No 360
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=78.17 E-value=5.4 Score=28.96 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=19.0
Q ss_pred HHHHHhcCCeEEEEecCCCCCHHHHHHHHHH
Q psy15004 68 KDMATAYDCKFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 68 ~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
....+..|++++.+|++++.+++++...+..
T Consensus 5 ~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 5 LEQYEKLGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 3344556777777777777777776655443
No 361
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=77.93 E-value=26 Score=26.04 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+.||.+|++.+.+ ..++..+...++.+.......+.+ ..+|.|+.+.. ...+...++.+.++.+++.
T Consensus 140 ~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 140 GKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETELIDAFAERLGTQVIH 207 (212)
T ss_pred ccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHHHHHHHHHHcCCCEEE
Confidence 3799999999864 456555554444443332222333 45899999953 2233455666777765543
No 362
>KOG0448|consensus
Probab=77.20 E-value=13 Score=33.19 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=33.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC 59 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~ 59 (167)
..+..+||++|||....+..+..+ ++++....+ .+..++++-||.|....
T Consensus 227 d~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 227 DSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----EKPNIFILNNKWDASAS 276 (749)
T ss_pred HHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----cCCcEEEEechhhhhcc
Confidence 456789999999998876544332 455555532 24457788899998654
No 363
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=76.42 E-value=18 Score=25.62 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=41.8
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
...+..+|.+|++.+.+. .++..+..+++.+... ......+|.|++|-.... ..+....+.+.++.+++
T Consensus 79 ~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~~--~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 79 ITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMVE--GGDMVEDIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccccc--hhhHHHHHHHHhCCCEE
Confidence 345678999999998753 5666666666666442 123577899999854221 12223345555566544
No 364
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=76.26 E-value=18 Score=29.23 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTID-LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~-~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
..+..++|.|.+. .+.+..+..+.+.+ -+.-+|.||.|.... .-.+..++...++|+..++ +|++
T Consensus 232 ~p~~~~LVl~a~~g~~~~~~a~~f~~~~--------~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~ 297 (318)
T PRK10416 232 APHEVLLVLDATTGQNALSQAKAFHEAV--------GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEG 297 (318)
T ss_pred CCceEEEEEECCCChHHHHHHHHHHhhC--------CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCC
Confidence 4677888888875 22333222221111 245678899995422 1233445566788888887 7888
Q ss_pred HHHHHH
Q psy15004 89 VDELLV 94 (167)
Q Consensus 89 v~~lf~ 94 (167)
++++-.
T Consensus 298 ~~Dl~~ 303 (318)
T PRK10416 298 IDDLQP 303 (318)
T ss_pred hhhCcc
Confidence 877643
No 365
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=75.05 E-value=6.2 Score=33.47 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=29.1
Q ss_pred CCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
--+|.+|+|+|...- .+.. .++. +.+...++||+-..||.|...
T Consensus 103 tAvDsAvMVIDaAKG--iE~qT~KLf----eVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 103 TAVDSAVMVIDAAKG--IEPQTLKLF----EVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred HhhheeeEEEecccC--ccHHHHHHH----HHHhhcCCceEEEeecccccc
Confidence 358999999998652 2211 1122 223446899999999999653
No 366
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=75.03 E-value=25 Score=29.96 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=38.7
Q ss_pred HHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 23 LASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 23 ~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
++.|..+ +..+.+|... +.|+|++.|=.+-.. .-+.+.+.++..+++.+++.+++.
T Consensus 162 Re~Y~eAEervI~ELk~i----gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEI----GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCE 218 (492)
T ss_pred hHHHHHHHHHHHHHHHHh----CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehH
Confidence 4556555 4456777554 689999999888432 223456667778899999988775
No 367
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=74.51 E-value=11 Score=24.94 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=31.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
...+..+|.+|++.+.+ ..++..+..+++.+.+........+.+|.|+
T Consensus 59 ~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 44567899999998854 5677777777777755422113456777775
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=73.56 E-value=19 Score=29.31 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=39.9
Q ss_pred CCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDL-ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~-~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
+.|.+++|.|.+.. +..+.+..+...+ + +--+|.||.|..... -.+..++...+.|+..++ +|++
T Consensus 252 ~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~-~~giIlTKlD~~~~~----G~~ls~~~~~~~Pi~~i~--~Gq~ 317 (336)
T PRK14974 252 KPDLVIFVGDALAGNDAVEQAREFNEAV-------G-IDGVILTKVDADAKG----GAALSIAYVIGKPILFLG--VGQG 317 (336)
T ss_pred CCceEEEeeccccchhHHHHHHHHHhcC-------C-CCEEEEeeecCCCCc----cHHHHHHHHHCcCEEEEe--CCCC
Confidence 46777888887542 2222222221111 1 345677999974321 123334445677877776 7888
Q ss_pred HHHHHHH
Q psy15004 89 VDELLVG 95 (167)
Q Consensus 89 v~~lf~~ 95 (167)
++++...
T Consensus 318 v~Dl~~~ 324 (336)
T PRK14974 318 YDDLIPF 324 (336)
T ss_pred hhhcccC
Confidence 8886543
No 369
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=72.11 E-value=4.3 Score=27.53 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=18.0
Q ss_pred EEecCCCCCccccChhHHHHHHHhcC-CeEEEEecC
Q psy15004 50 VANKTDLVRCRVVTDEDGKDMATAYD-CKFIETSVG 84 (167)
Q Consensus 50 vgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~ 84 (167)
++||+|+.. ..+-...+...+. ..++.|||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 589999743 2344555666654 689999985
No 370
>KOG3929|consensus
Probab=72.02 E-value=8.2 Score=30.62 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=12.4
Q ss_pred CceEEEEEecCCCC
Q psy15004 44 SKAVILVANKTDLV 57 (167)
Q Consensus 44 ~~piilvgNK~Dl~ 57 (167)
.+|+++||.|.|.-
T Consensus 190 P~PV~IVgsKYDvF 203 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVF 203 (363)
T ss_pred CCceEEeccchhhh
Confidence 58999999999964
No 371
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=71.92 E-value=14 Score=27.19 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 23 LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 23 ~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
++.-.++..|+.++... ++-+++|-|.. +.....++..+|++|+- .|+...+ -.|...++++
T Consensus 45 ~~~tpe~~~W~~e~k~~----gi~v~vvSNn~---------e~RV~~~~~~l~v~fi~-~A~KP~~--~~fr~Al~~m 106 (175)
T COG2179 45 PDATPELRAWLAELKEA----GIKVVVVSNNK---------ESRVARAAEKLGVPFIY-RAKKPFG--RAFRRALKEM 106 (175)
T ss_pred CCCCHHHHHHHHHHHhc----CCEEEEEeCCC---------HHHHHhhhhhcCCceee-cccCccH--HHHHHHHHHc
Confidence 44456788999999654 67888888853 34566788889999885 3443332 3344444433
No 372
>KOG2486|consensus
Probab=71.23 E-value=2.8 Score=33.41 Aligned_cols=56 Identities=20% Similarity=0.049 Sum_probs=34.6
Q ss_pred CCceEEEEEecCCCCCccc----cChhHHHH----HHH---hcCCeEEEEecCCCCCHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRV----VTDEDGKD----MAT---AYDCKFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~----v~~~~~~~----~~~---~~~~~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
.++|+.+|.||||-..... -....+.. +.+ ....+++.+|+.++.|++++...+.+
T Consensus 247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 3799999999999642111 00111111 111 11346778999999999988766554
No 373
>PRK13695 putative NTPase; Provisional
Probab=70.76 E-value=36 Score=24.35 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=31.4
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.+.|+|++.||.... .....+....+..++++ +.+|-+++...+++.+
T Consensus 125 ~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 125 SEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 367999999986431 22334444456667776 5667778888877765
No 374
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=69.83 E-value=9.9 Score=31.36 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=28.6
Q ss_pred CceEEEEEecCCCCC-ccccChhHHHHHHHhcCCeEEEEecCCCC
Q psy15004 44 SKAVILVANKTDLVR-CRVVTDEDGKDMATAYDCKFIETSVGINH 87 (167)
Q Consensus 44 ~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~~~ 87 (167)
..|+|+|+|+.|..- ...-..+....++...+.+++.+||+.-.
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E~ 243 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIEA 243 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 489999999998420 11111244455666678889999985443
No 375
>KOG0780|consensus
Probab=67.33 E-value=48 Score=27.97 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCe--EEEEecCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCK--FIETSVGIN 86 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~--~~e~SA~~~ 86 (167)
++-...+++-|.-....|+.++.|-... .+|++--++++|-. ....++..-.++.++. .+.||-...
T Consensus 128 kG~K~~LvcaDTFRagAfDQLkqnA~k~-------~iP~ygsyte~dpv----~ia~egv~~fKke~fdvIIvDTSGRh~ 196 (483)
T KOG0780|consen 128 KGYKVALVCADTFRAGAFDQLKQNATKA-------RVPFYGSYTEADPV----KIASEGVDRFKKENFDVIIVDTSGRHK 196 (483)
T ss_pred cCCceeEEeecccccchHHHHHHHhHhh-------CCeeEecccccchH----HHHHHHHHHHHhcCCcEEEEeCCCchh
Confidence 3567888999988888999887765544 78999888888832 2234555555666664 455666544
Q ss_pred CCHHHHHHHHHHHHH
Q psy15004 87 HNVDELLVGILTQIR 101 (167)
Q Consensus 87 ~~v~~lf~~l~~~i~ 101 (167)
.. .++|+++.+...
T Consensus 197 qe-~sLfeEM~~v~~ 210 (483)
T KOG0780|consen 197 QE-ASLFEEMKQVSK 210 (483)
T ss_pred hh-HHHHHHHHHHHh
Confidence 33 568888877544
No 376
>KOG0463|consensus
Probab=66.26 E-value=24 Score=29.63 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=19.5
Q ss_pred hcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 73 AYDCKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 73 ~~~~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+.-|++|.+|-.+|.|++-+. ..+..+.
T Consensus 330 er~CPIFQvSNVtG~NL~LLk-mFLNlls 357 (641)
T KOG0463|consen 330 ERVCPIFQVSNVTGTNLPLLK-MFLNLLS 357 (641)
T ss_pred ccccceEEeccccCCChHHHH-HHHhhcC
Confidence 334789999999999987543 3444443
No 377
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=64.50 E-value=53 Score=25.27 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=37.3
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
+..||.+|++... +..++..+...+..+.......++++ -+|.|+.+. .+....+.+.++.+++
T Consensus 138 l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~~~~~~~~g~~vl 202 (270)
T PRK13185 138 LQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLIDKFNEAVGLKVL 202 (270)
T ss_pred hhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHHHHHHHHcCCCEE
Confidence 4569999998865 45666666555555433222345664 378899772 1233445555555443
No 378
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=63.73 E-value=38 Score=25.31 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=49.1
Q ss_pred cCCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC-------hhHHHHHHHhcCCeE
Q psy15004 8 YETPHGFIIVYSTIDLASFHV--AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT-------DEDGKDMATAYDCKF 78 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~--~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~-------~~~~~~~~~~~~~~~ 78 (167)
..+.++||||+.++.. +-++ +.+++..+-.... -.-+|||.+..|......+. ......+.+..+-.|
T Consensus 81 ~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp TT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred cCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 4678999999998832 2222 2223333321111 12477778877765433221 112344556666667
Q ss_pred EEEecC------CCCCHHHHHHHHHHHHHhh
Q psy15004 79 IETSVG------INHNVDELLVGILTQIRLK 103 (167)
Q Consensus 79 ~e~SA~------~~~~v~~lf~~l~~~i~~~ 103 (167)
...... ....+.+++..+-..+.+.
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 766655 2245667776665555543
No 379
>KOG0085|consensus
Probab=60.52 E-value=58 Score=25.58 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=37.9
Q ss_pred CCceEEEEEecCCCCCccc----------------cChhHHHHHHHh----cC------CeEEEEecCCCCCHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRV----------------VTDEDGKDMATA----YD------CKFIETSVGINHNVDELLVGI 96 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~----------------v~~~~~~~~~~~----~~------~~~~e~SA~~~~~v~~lf~~l 96 (167)
.+.++|+..||.||.++.- ...+.++.|.-+ .+ +---.+.|.+-+||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 4678999999999865321 112233333221 11 112357788889999999988
Q ss_pred HHHHHh
Q psy15004 97 LTQIRL 102 (167)
Q Consensus 97 ~~~i~~ 102 (167)
...|..
T Consensus 345 kDtiLq 350 (359)
T KOG0085|consen 345 KDTILQ 350 (359)
T ss_pred HHHHHH
Confidence 877764
No 380
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=60.40 E-value=58 Score=24.22 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=45.3
Q ss_pred CCcEEEEEEeCCCH--HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 10 TPHGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 10 ~ad~~i~v~d~t~~--~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
+||.+-+|.++... ..++.+.+++..+.+... +.|+.++.....+.+ . ....+-+.+.+.|..|+.||.
T Consensus 82 GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~-~--~i~~a~ria~e~GaD~IKTsT 152 (203)
T cd00959 82 GADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLLTD-E--EIIKACEIAIEAGADFIKTST 152 (203)
T ss_pred CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCH-H--HHHHHHHHHHHhCCCEEEcCC
Confidence 79999999988631 233445566666655432 678777777666631 1 123455567788999999993
No 381
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=60.32 E-value=41 Score=22.62 Aligned_cols=42 Identities=17% Similarity=0.038 Sum_probs=27.5
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKT 54 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~ 54 (167)
.+|...+|+|.. ....+.....+..+... ..++|+++++++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRER--NFGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHH--STT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHh--CCCCCEEEEecCC
Confidence 355555555544 55555667788888665 3689999999865
No 382
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=59.56 E-value=69 Score=27.79 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec--CCCCCHHHHHHHHHHHHH
Q psy15004 26 FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV--GINHNVDELLVGILTQIR 101 (167)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA--~~~~~v~~lf~~l~~~i~ 101 (167)
|.++..-++.++.+ ++|+|+..|+..-..+.+ .+....++.+.|+.+..+.+ +-|.|-.++-+.+++.+.
T Consensus 342 ~~NL~~Hi~n~~~f----g~p~VVaiN~F~~Dt~~E--i~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 342 FANLRKHIENIKKF----GVPVVVAINKFSTDTDAE--LALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHHHHHc----CCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 34444445555443 789999999997433222 34566788888887665543 455677777766665554
No 383
>KOG3887|consensus
Probab=59.23 E-value=88 Score=24.77 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=54.7
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHH-hhCCCCCceEEEEEecCCCCCc-cc------cChhHHHHHHHh---
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALW-KKDSIRSKAVILVANKTDLVRC-RV------VTDEDGKDMATA--- 73 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~-~~~~~~~~piilvgNK~Dl~~~-~~------v~~~~~~~~~~~--- 73 (167)
.+.|+++.+.|+|.|.-+. -.+.+..+...+. ...-.+++.+=+...|.|-..+ -. +.......++..
T Consensus 96 e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle 174 (347)
T KOG3887|consen 96 EMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLE 174 (347)
T ss_pred HHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhc
Confidence 3457889999999997542 2233333322221 1223467888888999995432 11 111111222221
Q ss_pred -cCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 74 -YDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 74 -~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
....|+-||. ..+.+-|.|..+++.+..
T Consensus 175 ~v~vsf~LTSI-yDHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 175 KVQVSFYLTSI-YDHSIFEAFSKVVQKLIP 203 (347)
T ss_pred cceEEEEEeee-cchHHHHHHHHHHHHHhh
Confidence 1235777776 467888888888876653
No 384
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=59.15 E-value=57 Score=24.63 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=33.3
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
...+..+|.+|+|...+ ..++..+...++.+.... ..++.+|.|+++-
T Consensus 128 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~ 175 (261)
T TIGR01968 128 RNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP 175 (261)
T ss_pred HHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence 34456789999998864 567777777766665432 2367788899885
No 385
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=58.84 E-value=75 Score=23.83 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=29.0
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDL 56 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl 56 (167)
...+..||.+|+|.+.+ ..++..+....+.+... +.+ +.+|.|+.+-
T Consensus 125 ~~~l~~ad~vliv~~~~-~~s~~~~~~~~~~~~~~----~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 125 VTALAAADELLLVVNPE-ISSITDALKTKIVAEKL----GTAILGVVLNRVTR 172 (251)
T ss_pred HHHHHhCCeEEEEECCC-CchHHHHHHHHHHHHhc----CCceEEEEEECCCc
Confidence 34456799999999875 44555544443333221 333 5688999985
No 386
>KOG0459|consensus
Probab=58.71 E-value=8.3 Score=32.40 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=44.6
Q ss_pred CCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc---ccC---hhHHHHHHHhcC----
Q psy15004 9 ETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR---VVT---DEDGKDMATAYD---- 75 (167)
Q Consensus 9 ~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~---~v~---~~~~~~~~~~~~---- 75 (167)
.+||..++|.+... ...|+.--+-.+...-.....-...|++.||.|-+... +-. .+....+....|
T Consensus 179 sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~ 258 (501)
T KOG0459|consen 179 SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPK 258 (501)
T ss_pred chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCC
Confidence 46788888887632 22233211111111001011224688899999965311 101 122233333333
Q ss_pred --CeEEEEecCCCCCHHHHHH
Q psy15004 76 --CKFIETSVGINHNVDELLV 94 (167)
Q Consensus 76 --~~~~e~SA~~~~~v~~lf~ 94 (167)
..|+++|..+|.++++...
T Consensus 259 ~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 259 PDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CCceeeecccccccchhhccc
Confidence 3699999999999988654
No 387
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=58.65 E-value=58 Score=24.43 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=31.3
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
+...+..||.+|++...+ ..++..+...+.++... .....++-+|.|+.|..
T Consensus 130 ~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 130 TRQALAAADLVLVVVNAD-AACYATLHQQALALFAG-SGPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhc-ccccccceEEeeccCcc
Confidence 345567789999998864 45666655333333221 12244567889998853
No 388
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=57.74 E-value=66 Score=24.74 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=28.8
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDL 56 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl 56 (167)
+..||.+|++...+ ..++..+...++.+.......++++ .+|.|++|.
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56799999988764 4455555554444432211235553 467899984
No 389
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=57.67 E-value=26 Score=25.11 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=27.9
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecC
Q psy15004 13 GFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKT 54 (167)
Q Consensus 13 ~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~ 54 (167)
+.|+--.+.-+.|+++-.+|+.+. ....+.-.+|++|||-
T Consensus 86 vYivtaamdhp~s~~dK~eWl~E~--FPFi~~qn~vfCgnKn 125 (180)
T COG4502 86 VYIVTAAMDHPKSCEDKGEWLKEK--FPFISYQNIVFCGNKN 125 (180)
T ss_pred EEEEEeccCCchhHHHHHHHHHHH--CCCCChhhEEEecCCC
Confidence 445444445688999888899887 3334455689999984
No 390
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=56.09 E-value=93 Score=27.37 Aligned_cols=68 Identities=7% Similarity=-0.082 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec--CCCCCHHHHHHHHHHHHH
Q psy15004 28 VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV--GINHNVDELLVGILTQIR 101 (167)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA--~~~~~v~~lf~~l~~~i~ 101 (167)
++..-++.++. -++|+|+..|+..-..+.+ .+...+++.+.|+.+..+.+ +-|.|-.++-+.+++.+.
T Consensus 389 NL~~Hi~n~~~----fg~pvVVaiN~F~~Dt~~E--i~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 389 NLLHHIGTVKK----SGINPVVCINAFYTDTHAE--IAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHHHHH----cCCCeEEEeCCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 34434444443 3799999999987433222 34556677888886654433 444566666666665443
No 391
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=55.90 E-value=61 Score=21.90 Aligned_cols=69 Identities=7% Similarity=0.065 Sum_probs=39.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
++|++++. .++....+.+..+++.+.+. ...++++++-|+... ++ .....+.|+ .||. .+..
T Consensus 50 ~~d~V~iS--~~~~~~~~~~~~~~~~L~~~-~~~~i~i~~GG~~~~---------~~-~~~~~~~G~d~~~~----~~~~ 112 (122)
T cd02071 50 DVDVIGLS--SLSGGHMTLFPEVIELLREL-GAGDILVVGGGIIPP---------ED-YELLKEMGVAEIFG----PGTS 112 (122)
T ss_pred CCCEEEEc--ccchhhHHHHHHHHHHHHhc-CCCCCEEEEECCCCH---------HH-HHHHHHCCCCEEEC----CCCC
Confidence 45555554 45667778888899988765 334666666666432 12 223345676 4554 3445
Q ss_pred HHHHHHH
Q psy15004 89 VDELLVG 95 (167)
Q Consensus 89 v~~lf~~ 95 (167)
++++...
T Consensus 113 ~~~~~~~ 119 (122)
T cd02071 113 IEEIIDK 119 (122)
T ss_pred HHHHHHH
Confidence 5555443
No 392
>KOG0467|consensus
Probab=55.37 E-value=16 Score=33.10 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=27.8
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
..+=+|+++++.|+..--.-+. ...+.+.|.. +...+||.||+|
T Consensus 92 as~l~d~alvlvdvvegv~~qt-~~vlrq~~~~----~~~~~lvinkid 135 (887)
T KOG0467|consen 92 ASRLSDGALVLVDVVEGVCSQT-YAVLRQAWIE----GLKPILVINKID 135 (887)
T ss_pred hhhhcCCcEEEEeeccccchhH-HHHHHHHHHc----cCceEEEEehhh
Confidence 3455899999999865222121 2234444432 556899999999
No 393
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=54.09 E-value=16 Score=28.93 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=27.1
Q ss_pred CceEEEEEecCC--CCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 44 SKAVILVANKTD--LVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 44 ~~piilvgNK~D--l~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
..|+++|+|+.| +..... .......++...+.+++.+||+.-..
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~-~~~~~~~~~~~~~~~~i~~sa~~E~e 240 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNN-KVLKVREIAAKEGAEVIPISAKIEAE 240 (274)
T ss_pred cCCceeecccCHHHhccccH-HHHHHHHHHhcCCCeEEEeeHHHHHH
Confidence 379999999998 321111 11223344455678899999965433
No 394
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=53.99 E-value=72 Score=22.15 Aligned_cols=66 Identities=18% Similarity=0.100 Sum_probs=35.1
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc-CCeEEE
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY-DCKFIE 80 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e 80 (167)
...|.+++.+-.+|....+++...++.+. ++.++++++.........+ ......++++++ ++.++.
T Consensus 49 ~~~d~vvi~lGtNd~~~~~nl~~ii~~~~-----~~~~ivlv~~~~~~~~~~~-~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 49 KLRKTVVIGLGTNGPFTKDQLDELLDALG-----PDRQVYLVNPHVPRPWEPD-VNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHcC-----CCCEEEEEECCCCcchHHH-HHHHHHHHHHHCCCcEEec
Confidence 34678888888877655566665555541 2456777776532111111 113334455555 555544
No 395
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=53.69 E-value=34 Score=22.85 Aligned_cols=57 Identities=7% Similarity=-0.026 Sum_probs=33.4
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 14 FIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 14 ~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
-+++++.++...+..+.++++.+++. ...++++++-|+=... . . ......|+..+..
T Consensus 52 dvV~iS~~~~~~~~~~~~~i~~l~~~-~~~~~~i~vGG~~~~~-~--------~-~~~~~~G~D~~~~ 108 (119)
T cd02067 52 DAIGLSGLLTTHMTLMKEVIEELKEA-GLDDIPVLVGGAIVTR-D--------F-KFLKEIGVDAYFG 108 (119)
T ss_pred CEEEEeccccccHHHHHHHHHHHHHc-CCCCCeEEEECCCCCh-h--------H-HHHHHcCCeEEEC
Confidence 34555666667788889999999765 2225565555543321 1 1 2456667755543
No 396
>KOG1249|consensus
Probab=53.20 E-value=6.6 Score=33.94 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=18.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
...+|++++.|+++|...|....
T Consensus 188 ~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 188 VDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred hhhhhhhhcccHHHHHHHhhhee
Confidence 35689999999999988777644
No 397
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.15 E-value=74 Score=22.07 Aligned_cols=76 Identities=11% Similarity=0.039 Sum_probs=45.4
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCHH
Q psy15004 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVD 90 (167)
Q Consensus 12 d~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v~ 90 (167)
++=+++.+..+..+.+.+...++.+.+. ...++++++=|+..+ ++.. ...+.|+ .||. .|.++.
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~-g~~~i~vivGG~~~~---------~~~~-~l~~~Gvd~~~~----~gt~~~ 117 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKL-GRPDILVVVGGVIPP---------QDFD-ELKEMGVAEIFG----PGTPIP 117 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhc-CCCCCEEEEeCCCCh---------HhHH-HHHHCCCCEEEC----CCCCHH
Confidence 4444555666666778888888888664 233555554445532 1112 2445677 4553 566888
Q ss_pred HHHHHHHHHHHh
Q psy15004 91 ELLVGILTQIRL 102 (167)
Q Consensus 91 ~lf~~l~~~i~~ 102 (167)
++...+.+.+..
T Consensus 118 ~i~~~l~~~~~~ 129 (132)
T TIGR00640 118 ESAIFLLKKLRK 129 (132)
T ss_pred HHHHHHHHHHHH
Confidence 988888876643
No 398
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=53.03 E-value=1e+02 Score=23.63 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=28.9
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDL 56 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl 56 (167)
+.-||.+|++... +..++..+...++.+.......++++ .+|.|++|-
T Consensus 136 l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 136 LQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred hhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 5679999998764 45566655555444433211235553 577899874
No 399
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=52.44 E-value=19 Score=24.68 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=26.1
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..+|+.=|++-++.... +..+- ...++|++.|++|.+|-
T Consensus 43 ~a~LVviA~Dv~P~~~~~~----l~~lc---~~~~vpyv~V~sk~~LG 83 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKH----LPALC---EEKNVPYVYVGSKKELG 83 (116)
T ss_pred CCcEEEEecCCCHHHHHHH----HHHHH---HhcCCCEEEeCCHHHHH
Confidence 4777777777664433333 33332 22489999999998863
No 400
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=52.39 E-value=1.1e+02 Score=24.13 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=49.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCC--------ccccChhHHHHHHHhcCCeEEE
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVR--------CRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~--------~~~v~~~~~~~~~~~~~~~~~e 80 (167)
.++++|++.+.++.++.|.-..-+-+-|.... ..+--++||..|-|-.. +..+++..+..+..+.=+|.|.
T Consensus 63 ~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i~P~fr 142 (271)
T COG1512 63 GAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEVGYGLEGVLTDAQAGRIIRETIAPAFR 142 (271)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEEecCcccccChHHHHHHHHhhhCcccc
Confidence 57899999999997777754332222233211 12335888888888321 2345566666666655445553
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
..|.-.-++..++.+..
T Consensus 143 -----~gny~~gi~~~id~l~~ 159 (271)
T COG1512 143 -----DGNYAGGLEAGIDRLVA 159 (271)
T ss_pred -----cCcHHHHHHHHHHHHHH
Confidence 33344444444444443
No 401
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=51.13 E-value=17 Score=28.22 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
++++..||+++.|++++++.+...+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 3789999999999999999887754
No 402
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=50.14 E-value=36 Score=23.31 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.3
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
+.|++++|.-+... -..++..+++...+++++.+-...
T Consensus 12 ~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~~~k 49 (137)
T PF00205_consen 12 KRPVILAGRGARRS----GAAEELRELAEKLGIPVATTPMGK 49 (137)
T ss_dssp SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEGGGT
T ss_pred CCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecCccc
Confidence 67999999887633 235788999999999998775443
No 403
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=49.86 E-value=44 Score=27.03 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=22.9
Q ss_pred CCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCC-CCCceEEEEEecCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVA-EQCLQALWKKDS-IRSKAVILVANKTDLV 57 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~-~~~~piilvgNK~Dl~ 57 (167)
+.|++|||..++.. .+... ...++.+...-+ .--.++|+|.|+.|..
T Consensus 118 g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 118 TIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred CCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 57888888654421 11111 222333322110 0113578888888865
No 404
>CHL00175 minD septum-site determining protein; Validated
Probab=49.28 E-value=93 Score=24.09 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=31.2
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
..+..+|.+|+|.+.+ ..++..+..+++.+... .. ..+-+|.|+++-
T Consensus 144 ~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~-~~--~~~~lvvN~~~~ 190 (281)
T CHL00175 144 NAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEAN-GI--YNVKLLVNRVRP 190 (281)
T ss_pred HHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHc-CC--CceEEEEeccCh
Confidence 4456789999998754 56777776666666543 22 235677899874
No 405
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=48.66 E-value=94 Score=21.96 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=41.1
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCc-eEEEEEecCCCCCc-----ccc-ChhHHHHHHHhcCCeEE
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSK-AVILVANKTDLVRC-----RVV-TDEDGKDMATAYDCKFI 79 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~-piilvgNK~Dl~~~-----~~v-~~~~~~~~~~~~~~~~~ 79 (167)
..+|.+|+|...+ +.+...+..+++.+.+. +. ..-+|.|+.+-... ... .....+.+++.++.+++
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV----NIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHhc----CCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEE
Confidence 4689999998765 56788888888888654 33 34578999885311 111 12344556666655443
No 406
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=48.63 E-value=1.2e+02 Score=23.02 Aligned_cols=71 Identities=11% Similarity=0.028 Sum_probs=47.0
Q ss_pred CCCcEEEEEEeCCC--HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 9 ETPHGFIIVYSTID--LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 9 ~~ad~~i~v~d~t~--~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
.+||.+=+|+++.. ...++.+.+.+..+.+.. .++|+.++....-|.++ + ...+-.++.+.|+.|+.||.-
T Consensus 82 ~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~--~g~~lKvIlE~~~L~~~-e--i~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 82 YGADEVDMVINIGALKDGNEEVVYDDIRAVVEAC--AGVLLKVIIETGLLTDE-E--IRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHc--CCCeEEEEEecCCCCHH-H--HHHHHHHHHHhCCCEEEeCCC
Confidence 47899999998863 234555566666665543 26777777666666442 1 235566777889999999944
No 407
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=48.34 E-value=32 Score=30.01 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec--CCCCCHHHHHHHHHHHH
Q psy15004 26 FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV--GINHNVDELLVGILTQI 100 (167)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA--~~~~~v~~lf~~l~~~i 100 (167)
|.++..-++.++. -++|+|+..|+.--..+.+ .+...+++.+.|+.+..+.. +-|.|-.++-+.+++.+
T Consensus 357 ~~NL~rHIeNik~----fGvpvVVAIN~F~tDT~aE--i~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 357 FANLERHIENIKK----FGVPVVVAINRFPTDTDAE--IELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHHHHC----TT--EEEEEE--TTS-HHH--HHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHh----cCCCeEEEecCCCCCCHHH--HHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 4455555555544 3899999999987433222 24455667777887554432 45677788888888777
No 408
>KOG2961|consensus
Probab=47.98 E-value=86 Score=22.89 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=41.1
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHH
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
+.-++++.|-+-+.+ ..-+.+.+..+..++|++++.-|.+...+..|+.+....
T Consensus 79 ek~i~v~SNsaG~~~-~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 79 EKDIAVFSNSAGLTE-YDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred cccEEEEecCcCccc-cCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhC
Confidence 456888888887643 223457788888999999999999999888877665543
No 409
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=47.53 E-value=72 Score=24.57 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=40.3
Q ss_pred ccCCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 7 NYETPHGFIIVYSTID----LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~----~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+..++++-++|+-+-. .+...++..|+..+.+......+--|+|+..++ ..+..++++.|+.|+.+.
T Consensus 141 L~~D~~G~~VVIElKR~~a~~~aV~QL~rY~~~l~~~~~~~~VRGilvA~~i~---------~~a~~ll~~~glef~~ld 211 (228)
T PF01939_consen 141 LAKDKDGNLVVIELKRRRADRDAVEQLLRYVELLKRDPGLEPVRGILVAPSIT---------PQARELLEDRGLEFVELD 211 (228)
T ss_dssp EEE-TTS-EEEEEE-SS-B-HHHHHHHHHHHHHHHHHH--S-EEEEEEES-B----------HHHHHHHHHHT-EEEE--
T ss_pred EEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHhhccCCCceeEEEECCCCC---------HHHHHHHHHcCCEEEEec
Confidence 4556677777777633 456666777777776543335667889888875 466788899999999877
No 410
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=47.41 E-value=27 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=31.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.|..++++||+|| |+| .|.-..+++.+|.+. +...+|+||.--+
T Consensus 128 E~i~Ll~eADIVV-----TNP-PFSLFrEyv~~Li~~----~KkFlIIGN~Nai 171 (336)
T PF13651_consen 128 ECIELLKEADIVV-----TNP-PFSLFREYVAQLIEY----DKKFLIIGNINAI 171 (336)
T ss_pred HHHHHHhcCCEEE-----eCC-CcHHHHHHHHHHHHh----CCCEEEEeccccc
Confidence 4666778888874 675 466556677777554 6789999998543
No 411
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=47.15 E-value=24 Score=24.07 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.6
Q ss_pred CCceEEEEEecCCC
Q psy15004 43 RSKAVILVANKTDL 56 (167)
Q Consensus 43 ~~~piilvgNK~Dl 56 (167)
.++|++.+++|.+|
T Consensus 68 ~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 68 KGIPYVYVKKKEDL 81 (117)
T ss_pred cCCCEEEeCCHHHH
Confidence 47999999998775
No 412
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=46.74 E-value=18 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.5
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+|++|.||.|+.+..++...+
T Consensus 44 tAknGgNvKEvme~~lr~~l~ 64 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLK 64 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 789999999999887776554
No 413
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=45.92 E-value=1.7e+02 Score=25.77 Aligned_cols=68 Identities=7% Similarity=-0.099 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh-cCCeEEEEec--CCCCCHHHHHHHHHHHHH
Q psy15004 28 VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA-YDCKFIETSV--GINHNVDELLVGILTQIR 101 (167)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~SA--~~~~~v~~lf~~l~~~i~ 101 (167)
++..-++.++. -++|+|+..|+..-..+.+ .+...+++.+ .+..+..+.+ +-|+|-.++-+.+++.+.
T Consensus 381 NL~~Hi~n~~~----fg~pvVVaiN~F~~Dt~~E--i~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 381 NLKWHINNVAQ----YGLPVVVAINRFPTDTDEE--LEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHHHHH----cCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 44434444543 3799999999987433222 2455667777 5666655443 455667777666665553
No 414
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.90 E-value=35 Score=32.68 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=32.1
Q ss_pred cCCCcEEEEEEeCCCHH----HHH-----HHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 8 YETPHGFIIVYSTIDLA----SFH-----VAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~----s~~-----~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
.+-.+|||+..|+.+-- ... .+..-+.++... -....||+|++||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 45678999999995521 111 122234455433 235789999999999864
No 415
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=45.19 E-value=61 Score=22.49 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=40.1
Q ss_pred eEEEEEecCCCCCccc------cChhHHHHHHHhcCC-----eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 46 AVILVANKTDLVRCRV------VTDEDGKDMATAYDC-----KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 46 piilvgNK~Dl~~~~~------v~~~~~~~~~~~~~~-----~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
-++++|-|.+--.-.. -..+...++..++|+ .++.+||.+++.+.+.+++.+++|.+-
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 4888899987421000 011333445556664 689999999999999999999988764
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.60 E-value=1.1e+02 Score=25.88 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=34.6
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
..|.+++|.|.+.. +++..+...+...- + ..=+|.||.|-... .-.+..++...++|+..++.
T Consensus 212 ~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~~----~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 212 NPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDAR----GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred CCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCccc----ccHHHHHHHHHCcCEEEEeC
Confidence 47888999998642 33333444443211 1 23456899995321 12245555666777666544
No 417
>PLN02759 Formate--tetrahydrofolate ligase
Probab=44.52 E-value=1.5e+02 Score=26.35 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=37.3
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEec--CCCCCHHHHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSV--GINHNVDELLVGILTQIR 101 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA--~~~~~v~~lf~~l~~~i~ 101 (167)
-++|+|+..|+..-..+.+ .+..++++.+.|+ .+..+.. +-|.|-.++-+.+++.+.
T Consensus 449 fg~pvVVaiN~F~~Dt~~E--i~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 449 YGVNVVVAINMFATDTEAE--LEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred cCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 3799999999987533332 3456677888884 6655543 445666677666665443
No 418
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=43.95 E-value=49 Score=23.65 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=36.8
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
...+..+|.+|++.+.+ ..+...+..+++.+..... .-..+.+|.|+++...
T Consensus 111 ~~~l~~ad~viv~~~~~-~~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 111 RNALAAADYVIVPIEPD-PSSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN 162 (195)
T ss_dssp HHHHHTSSEEEEEEESS-HHHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred HHHHHhCceeeeecCCc-HHHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence 34566899999999976 4567888888877765421 1125678899998653
No 419
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=43.18 E-value=40 Score=26.65 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=33.6
Q ss_pred CCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC--hhHHHHHHHhcCCeEEE
Q psy15004 10 TPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT--DEDGKDMATAYDCKFIE 80 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~~~~~~~~~~e 80 (167)
..|++||+.+.+... +-.+ ...+.+|. ..+++|-|..|+|.....++. ......-....++.+|.
T Consensus 113 RVH~cLYfI~pt~~~L~~~D-i~~mk~Ls-----~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLD-IEFMKRLS-----KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHH-HHHHHHHT-----TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S--
T ss_pred CcceEEEEEcCCCccchHHH-HHHHHHhc-----ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeec
Confidence 468999999987632 1112 23555552 357899999999986533321 12223333456665554
No 420
>PRK13556 azoreductase; Provisional
Probab=42.94 E-value=1.4e+02 Score=22.17 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=29.9
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC------------CCCCceEEEEEe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD------------SIRSKAVILVAN 52 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~------------~~~~~piilvgN 52 (167)
-+..||++|+++-+-+-.---.++.|++.+.... ...+.+++++..
T Consensus 86 ~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~t 143 (208)
T PRK13556 86 QFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNA 143 (208)
T ss_pred HHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEe
Confidence 3568999999988765322234578998887541 124567777655
No 421
>PRK10818 cell division inhibitor MinD; Provisional
Probab=41.17 E-value=1.4e+02 Score=22.78 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=31.6
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC----C-CCCceEEEEEecCCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD----S-IRSKAVILVANKTDL 56 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~----~-~~~~piilvgNK~Dl 56 (167)
.+..+|.+|++.+.+ ..++..+..+++.+.... . ..++...+|.|..|-
T Consensus 132 ~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 132 ALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred HHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 356799999998876 456777766666654211 1 113345778898884
No 422
>PRK13555 azoreductase; Provisional
Probab=40.79 E-value=52 Score=24.76 Aligned_cols=33 Identities=3% Similarity=0.051 Sum_probs=23.5
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKK 39 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~ 39 (167)
-+..||++|+++-+-+-.---.++.|++.+...
T Consensus 86 ~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13555 86 QFLEADKVVFAFPLWNFTVPAPLITYISYLSQA 118 (208)
T ss_pred HHHHcCEEEEEcCcccccchHHHHHHHHHHhcC
Confidence 356799999999886643334457899888653
No 423
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=40.73 E-value=71 Score=24.85 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=30.9
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKT 54 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~ 54 (167)
.....+|.+|..|..-++..-+++.+-++-+.++ ..++.|+.+|-|=-
T Consensus 150 ~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~-r~~~tpVgivrnag 197 (249)
T COG1010 150 RAAAEADFVIALYNPISKRRPEQLGRAFEILREH-RSPDTPVGIVRNAG 197 (249)
T ss_pred HHHhhCCEEEEEECCccccchHHHHHHHHHHHHh-cCCCCcEEEEecCC
Confidence 3456799999999987754333444444444444 33578988887654
No 424
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=40.51 E-value=57 Score=22.70 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=27.7
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVIL 49 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piil 49 (167)
-+.-|+.||..-++...+=+.+..|+..|++.+. ...+||++
T Consensus 81 heq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 81 HEQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eEeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 3455777777777666566667789999876422 35677765
No 425
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=40.14 E-value=1.8e+02 Score=22.71 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=53.0
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC---cc----ccChhHHHHHHHhcCCeEEEEec
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR---CR----VVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~---~~----~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
.-.+|++=|-.+..+-..+.+.++.+.+ .++++..|+---.... .. ....+..+.+|..-|-.+|..
T Consensus 165 rk~iIllTDG~~~~~~~~~~~~~~~~~~----~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-- 238 (296)
T TIGR03436 165 RKALIVISDGGDNRSRDTLERAIDAAQR----ADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-- 238 (296)
T ss_pred CeEEEEEecCCCcchHHHHHHHHHHHHH----cCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc--
Confidence 3456666666554444444555555533 3688877765421110 00 012456777888776666554
Q ss_pred CCCCCHHHHHHHHHHHHHhhhC
Q psy15004 84 GINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
+..++.++|..+.+.+...+.
T Consensus 239 -~~~~l~~~f~~i~~~~~~~Y~ 259 (296)
T TIGR03436 239 -NSNDLDGAFAQIAEELRSQYL 259 (296)
T ss_pred -cCccHHHHHHHHHHHHhheEE
Confidence 667999999999999887643
No 426
>PRK06242 flavodoxin; Provisional
Probab=39.63 E-value=1.2e+02 Score=20.76 Aligned_cols=67 Identities=6% Similarity=-0.091 Sum_probs=37.7
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+.++|++|+...+-...-...+..|++++.. ..+.+++++++- +...... ...........|+.++.
T Consensus 41 ~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~---~~~k~~~~f~t~-g~~~~~~--~~~l~~~l~~~g~~~~~ 107 (150)
T PRK06242 41 LSEYDLIGFGSGIYFGKFHKSLLKLIEKLPP---VSGKKAFIFSTS-GLPFLKY--HKALKKKLKEKGFEIVG 107 (150)
T ss_pred HhHCCEEEEeCchhcCCcCHHHHHHHHhhhh---hcCCeEEEEECC-CCCcchH--HHHHHHHHHHCCCEEEE
Confidence 4578888888764332233455667666532 246788888874 3322221 23444555666776653
No 427
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=39.61 E-value=59 Score=25.16 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=9.4
Q ss_pred CceEEEEEecCCCCC
Q psy15004 44 SKAVILVANKTDLVR 58 (167)
Q Consensus 44 ~~piilvgNK~Dl~~ 58 (167)
.+++|+..+++|...
T Consensus 114 ~idvIL~V~rlD~~r 128 (249)
T cd01853 114 TPDVVLYVDRLDMYR 128 (249)
T ss_pred CCCEEEEEEcCCCCC
Confidence 456677777777543
No 428
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=39.50 E-value=1.9e+02 Score=22.82 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=48.7
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCCCCc-------------cccChhHHHHHHHh
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDLVRC-------------RVVTDEDGKDMATA 73 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl~~~-------------~~v~~~~~~~~~~~ 73 (167)
+..||.+|++.+. +..++..+...++.+.......++++ -+|.|+.+.... ..+........+..
T Consensus 136 l~~AD~viIp~~p-~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~ 214 (290)
T CHL00072 136 LNYADYCIIITDN-GFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYVEACPMPVLEVLPLIEDIRVSRV 214 (290)
T ss_pred hhcCCEEEEEecC-CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHHHHcCCceEEECCCChHHHHHHh
Confidence 3568999998875 45566666555544433211234433 478899883210 00111122222333
Q ss_pred cCCeEEEEecCCCCC---HHHHHHHHHHHHHhh
Q psy15004 74 YDCKFIETSVGINHN---VDELLVGILTQIRLK 103 (167)
Q Consensus 74 ~~~~~~e~SA~~~~~---v~~lf~~l~~~i~~~ 103 (167)
.+.++++... ...+ ....|..|++++...
T Consensus 215 ~g~pv~~~~p-~s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 215 KGKTLFEMVE-SEPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred CCCceEEeCC-CCcchhHHHHHHHHHHHHHHhC
Confidence 4555565533 2332 456677788777654
No 429
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=38.67 E-value=42 Score=26.10 Aligned_cols=41 Identities=7% Similarity=-0.062 Sum_probs=26.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEE-EEecC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVIL-VANKT 54 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piil-vgNK~ 54 (167)
++|.+|+.=|+++..+.+....+.+.+... ++|+++ .||-=
T Consensus 55 ~~D~vvitGDl~~~~~~~~~~~~~~~l~~l----~~Pv~~v~GNHD 96 (275)
T PRK11148 55 EFDLIVATGDLAQDHSSEAYQHFAEGIAPL----RKPCVWLPGNHD 96 (275)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHhhc----CCcEEEeCCCCC
Confidence 589999999999865555544455554332 456644 46653
No 430
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=38.17 E-value=76 Score=22.48 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=20.7
Q ss_pred CCcEEEEEEeCCCHHH--------HHHHHHHHHHHHhhCCCCCceEEEEE
Q psy15004 10 TPHGFIIVYSTIDLAS--------FHVAEQCLQALWKKDSIRSKAVILVA 51 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s--------~~~~~~~~~~l~~~~~~~~~piilvg 51 (167)
++|.+|+.+-++|... .+.+..++..++ .++.++|++.
T Consensus 67 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~----~~~~~vil~~ 112 (185)
T cd01832 67 RPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLR----AAGARVVVFT 112 (185)
T ss_pred CCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHH----hCCCEEEEec
Confidence 5677777776665432 334455555554 1345555553
No 431
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=37.95 E-value=1.4e+02 Score=21.01 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=20.8
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
..|.+++|.|..... ...++...+.+.. + ..-+|.||.|..
T Consensus 112 ~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~ 152 (173)
T cd03115 112 KPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGD 152 (173)
T ss_pred CCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCC
Confidence 377788888875432 1122333332211 2 244555888864
No 432
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=37.29 E-value=58 Score=26.31 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhCCC-----------CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHH
Q psy15004 23 LASFHVAEQCLQALWKKDSI-----------RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDE 91 (167)
Q Consensus 23 ~~s~~~~~~~~~~l~~~~~~-----------~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~ 91 (167)
...|+++..|+..-...... ..+|..++.+-+...+....-......+....+..++-.++++-.++..
T Consensus 55 ~~~f~~l~~Fi~~~~~~~~~~~~~~~~~~~~~~IPtA~lltGvN~~dh~~~F~~L~~~L~~~~~~~vv~L~S~dc~~lk~ 134 (330)
T PF07034_consen 55 SKLFDDLVDFIRNSHSSDESSARDWASQMNSREIPTALLLTGVNIPDHDLLFEQLSERLQSSVGPYVVRLNSKDCSNLKS 134 (330)
T ss_pred HHHHHHHHHHHHhhcCccccccccccccccccccchHHHHhCCCCccHHHHHHHHHHHHHhCCCcEEEEEecccchHHHH
Confidence 44566666676665322111 2577666555444433222212222333333366778889999999999
Q ss_pred HHHHHHHHHHhhhCC
Q psy15004 92 LLVGILTQIRLKLDN 106 (167)
Q Consensus 92 lf~~l~~~i~~~~~~ 106 (167)
++..|++++......
T Consensus 135 ~lk~iv~ql~~~~~~ 149 (330)
T PF07034_consen 135 ALKSIVRQLMSDKSD 149 (330)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999865443
No 433
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=37.12 E-value=1.6e+02 Score=23.65 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=35.6
Q ss_pred CcEEEEEEeCCCHHHH-HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc--CCeEEEEecCCCC
Q psy15004 11 PHGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIETSVGINH 87 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~-~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SA~~~~ 87 (167)
-+++|.|+|..+-... +.......++.. -=++|.||+|+.... +......+.. .++++++.-- ..
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~~~~----~~~~~~l~~lnp~a~i~~~~~~-~v 190 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVAGEA----EKLRERLARINARAPVYTVVHG-DI 190 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccCCHH----HHHHHHHHHhCCCCEEEEeccC-CC
Confidence 4789999998642211 111112233421 236778999997532 2333344433 3566665422 23
Q ss_pred CHHHHH
Q psy15004 88 NVDELL 93 (167)
Q Consensus 88 ~v~~lf 93 (167)
....+|
T Consensus 191 ~~~~l~ 196 (318)
T PRK11537 191 DLSLLF 196 (318)
T ss_pred CHHHHh
Confidence 444444
No 434
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=37.10 E-value=33 Score=24.81 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=24.4
Q ss_pred CcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc
Q psy15004 11 PHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC 59 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~ 59 (167)
-+.+|.|.|..+....... ..+.+++. . -=++|.||+|+.+.
T Consensus 114 ~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~------ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 114 LDSIITVVDATNFDELENIPELLREQIA-F------ADVIVLNKIDLVSD 156 (178)
T ss_dssp ESEEEEEEEGTTHGGHTTHCHHHHHHHC-T-------SEEEEE-GGGHHH
T ss_pred ccceeEEeccccccccccchhhhhhcch-h------cCEEEEeccccCCh
Confidence 5789999998764333333 22444442 1 23667899998643
No 435
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=37.10 E-value=2.9e+02 Score=24.61 Aligned_cols=57 Identities=14% Similarity=-0.000 Sum_probs=35.8
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHH-hcCC-eEEEEec--CCCCCHHHHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMAT-AYDC-KFIETSV--GINHNVDELLVGILTQIR 101 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-~~~~-~~~e~SA--~~~~~v~~lf~~l~~~i~ 101 (167)
-++|+|+..|+.--..+.+ .+...+++. +.|+ .+..+.. +-|.|-.++-+.+++.+.
T Consensus 436 fgvpvVVAIN~F~tDT~~E--i~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~ 496 (625)
T PTZ00386 436 FGVPVVVALNKFSTDTDAE--LELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTE 496 (625)
T ss_pred cCCCeEEEecCCCCCCHHH--HHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHh
Confidence 3899999999987433222 345566777 7783 5555443 445666666666665543
No 436
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=36.69 E-value=41 Score=25.29 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=29.6
Q ss_pred hHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHH
Q psy15004 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILT 98 (167)
Q Consensus 65 ~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~ 98 (167)
.+--+++++.+++|+-+|+-+..-|..||+.++.
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 4556788999999999999999999999998884
No 437
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=36.36 E-value=40 Score=24.24 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=22.2
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEe
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVAN 52 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgN 52 (167)
+..||++|++.-.=+-.---.++.|++.+.. ....+.|++++++
T Consensus 66 i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~-~~l~~K~~~~v~~ 109 (174)
T TIGR03566 66 IESADLLVVGSPVYRGSYTGLFKHLFDLVDP-NALIGKPVLLAAT 109 (174)
T ss_pred HHHCCEEEEECCcCcCcCcHHHHHHHHhcCH-hHhCCCEEEEEEe
Confidence 4568888887554321111223445444321 1234677777766
No 438
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=36.31 E-value=49 Score=20.37 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=14.7
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHH
Q psy15004 13 GFIIVYSTIDLASFHVAEQCLQA 35 (167)
Q Consensus 13 ~~i~v~d~t~~~s~~~~~~~~~~ 35 (167)
.++++||+++......+...+..
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~ 25 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKS 25 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCcHHHHHHHHHHHH
Confidence 57899999877555544444333
No 439
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.61 E-value=1.5e+02 Score=20.60 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCcEEEEEEeCCCH------HHH-HHHHHHHHHHHhhCCCCCceEEEEE
Q psy15004 10 TPHGFIIVYSTIDL------ASF-HVAEQCLQALWKKDSIRSKAVILVA 51 (167)
Q Consensus 10 ~ad~~i~v~d~t~~------~s~-~~~~~~~~~l~~~~~~~~~piilvg 51 (167)
..|.+++.+-.+|. +.| +.+..++..++.. .++.++++++
T Consensus 48 ~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~--~~~~~vi~~~ 94 (169)
T cd01828 48 QPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKH--FPNIKIVVQS 94 (169)
T ss_pred CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHH--CCCCeEEEEe
Confidence 56788888777662 222 3344455555432 2355666554
No 440
>PRK13660 hypothetical protein; Provisional
Probab=35.60 E-value=1.4e+02 Score=22.12 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=8.1
Q ss_pred CCCcEEEEEEeCCC
Q psy15004 9 ETPHGFIIVYSTID 22 (167)
Q Consensus 9 ~~ad~~i~v~d~t~ 22 (167)
..+|++|.+||-..
T Consensus 128 ~~sd~~i~~YD~e~ 141 (182)
T PRK13660 128 EHTDGALLVYDEEN 141 (182)
T ss_pred HccCeEEEEEcCCC
Confidence 45666666666543
No 441
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=35.45 E-value=1.3e+02 Score=21.91 Aligned_cols=47 Identities=17% Similarity=0.044 Sum_probs=30.8
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
..+.+|.+|+|.+.. ..+...+..-++.+... .-..+-+|.||.|..
T Consensus 147 ~~~~~D~vilV~~~~-~~~~~~~~~~~~~l~~~---~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAG-EIKKRDVQKAKEQLEQT---GSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECC-CCCHHHHHHHHHHHHhC---CCCEEEEEEeCcccc
Confidence 345689999999874 34556666666666433 123466788999964
No 442
>PRK06756 flavodoxin; Provisional
Probab=34.69 E-value=75 Score=22.01 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=24.3
Q ss_pred cCCCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhCCCCCceEEEEEe
Q psy15004 8 YETPHGFIIVYSTIDLASFH-VAEQCLQALWKKDSIRSKAVILVAN 52 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~-~~~~~~~~l~~~~~~~~~piilvgN 52 (167)
+.++|++|+....-....+. .+..|+..+... ...+.++.++|+
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~-~l~~k~~~~fgt 91 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSI-DLTGKKAAVFGS 91 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcC-CCCCCEEEEEeC
Confidence 34667777776543212222 355566665332 235677777777
No 443
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=34.68 E-value=37 Score=26.54 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+|++..||.++.||..|++.|...+
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHC
Confidence 3788899999999999999888765
No 444
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=34.57 E-value=51 Score=22.65 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.4
Q ss_pred CCceEEEEEecCCC
Q psy15004 43 RSKAVILVANKTDL 56 (167)
Q Consensus 43 ~~~piilvgNK~Dl 56 (167)
.++|++.+++|.+|
T Consensus 72 ~~Vp~~~~~tk~eL 85 (122)
T PRK04175 72 KKIPYVYVPSKKDL 85 (122)
T ss_pred cCCCEEEECCHHHH
Confidence 47899999988765
No 445
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=34.24 E-value=2.4e+02 Score=24.41 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE--EecCCCCCHHHHHHHHHHHHHh
Q psy15004 26 FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE--TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e--~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
|.++..-++.++. -++|+|+..||.-...+.+ .+....++.+.|.++.. +=|+-|+|-.++-+.++..+.+
T Consensus 355 ~aNL~~Hi~Nikk----fgvp~VVAIN~F~tDt~~E--i~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 355 FANLLKHIENIKK----FGVPVVVAINKFPTDTEAE--IAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HHHHHHHHHHHHH----cCCCeEEEeccCCCCCHHH--HHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 3344334444543 3799999999986322222 24456677788865443 3356778888888777777765
No 446
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=34.11 E-value=2.1e+02 Score=21.83 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=42.9
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHH
Q psy15004 16 IVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDEL 92 (167)
Q Consensus 16 ~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~l 92 (167)
+=.|+-+.+.++-.++|++++.= . .=++.++. .......++...+...+|+.-+++.+.+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~---~~~~~~~~d~~~l~~~yg~~gv~i~~~np~~l~~~ 76 (216)
T PRK03892 10 VEMDVRSEEAYELAKEWFDEVVF-----T--KKLVLEDS---PDFGSLKEELKELKKEYGKVAILLVTPKPSLIREV 76 (216)
T ss_pred EEeecccHHHHHHHHHHhhheEE-----E--EEEeccCC---CChhhhHHHHHHHHHhcCcceEEEecCCHHHHHHH
Confidence 44688999999999999988721 1 11111211 12333457778888888888888888765544443
No 447
>PHA02518 ParA-like protein; Provisional
Probab=33.42 E-value=1.9e+02 Score=20.94 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=27.3
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHH---HHHHHHHHhhCCCCCce-EEEEEecCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVA---EQCLQALWKKDSIRSKA-VILVANKTD 55 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~---~~~~~~l~~~~~~~~~p-iilvgNK~D 55 (167)
+...+..||.+|++...+. .++..+ ..++.++... ....| ..++.|+.+
T Consensus 92 ~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 92 ARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEV--TDGLPKFAFIISRAI 144 (211)
T ss_pred HHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhh--CCCCceEEEEEeccC
Confidence 3445667999999988763 344433 3344443222 12344 456667765
No 448
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=33.06 E-value=41 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.180 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+|+|..||.++.||+.+++.+...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 3888899999999999999888765
No 449
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=32.98 E-value=1.5e+02 Score=24.85 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCCCceEEEEEecCCCCCccccChh---HHHHHHHhcCCeEEEEecCCCCC
Q psy15004 41 SIRSKAVILVANKTDLVRCRVVTDE---DGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 41 ~~~~~piilvgNK~Dl~~~~~v~~~---~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
+..++|.|+..--+.......|+.+ +..+++.+++++++.-+|..-+|
T Consensus 182 G~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaEN 232 (471)
T COG3033 182 GADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAEN 232 (471)
T ss_pred CcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhh
Confidence 5568998887766666666667653 55668889999999888876655
No 450
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=32.95 E-value=28 Score=20.01 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=19.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
..+++..+.=.-++|++... ...+.+.++ .+....|.|+++++
T Consensus 16 ~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~---~g~~~~P~v~i~g~ 58 (60)
T PF00462_consen 16 KEFLDEKGIPYEEVDVDEDE---EAREELKEL---SGVRTVPQVFIDGK 58 (60)
T ss_dssp HHHHHHTTBEEEEEEGGGSH---HHHHHHHHH---HSSSSSSEEEETTE
T ss_pred HHHHHHcCCeeeEcccccch---hHHHHHHHH---cCCCccCEEEECCE
Confidence 33444444445566665432 111222222 13356787777654
No 451
>KOG1487|consensus
Probab=32.04 E-value=60 Score=25.96 Aligned_cols=51 Identities=25% Similarity=0.263 Sum_probs=35.4
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
-+|.+.+.||+|-.. .++..- .+.+ ..+.+||-++.|++++.+.+...+..
T Consensus 231 yVp~iyvLNkIdsIS-----iEELdi---i~~iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSIS-----IEELDI---IYTIPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred eeeeeeeecccceee-----eeccce---eeeccceeecccccccchHHHHHHHhhcchh
Confidence 479999999999532 221111 1122 46889999999999998888776554
No 452
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.00 E-value=1.7e+02 Score=20.64 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=26.2
Q ss_pred CCcEEEEEEeCCCHH----HHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 10 TPHGFIIVYSTIDLA----SFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~----s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
.+|.+++.+-++|-. -.+++..++..++.. .++.|++++.-.
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~--~p~~~iil~~~~ 102 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRET--HPDTPILLVSPR 102 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHH--CcCCCEEEEecC
Confidence 578888888877632 234455666666543 245677777654
No 453
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=31.93 E-value=72 Score=24.80 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=41.8
Q ss_pred EeCCCHHHHHHHHHHHHH--HHhhCCCCCceEEEEEecCCCCCccccC----hhHHHHHHHhcCCeEEEEecCCCCCHHH
Q psy15004 18 YSTIDLASFHVAEQCLQA--LWKKDSIRSKAVILVANKTDLVRCRVVT----DEDGKDMATAYDCKFIETSVGINHNVDE 91 (167)
Q Consensus 18 ~d~t~~~s~~~~~~~~~~--l~~~~~~~~~piilvgNK~Dl~~~~~v~----~~~~~~~~~~~~~~~~e~SA~~~~~v~~ 91 (167)
|++.|+..|.++--|+++ |+.+..... -.| +.+. .+....+..+.+|++ ....-.+
T Consensus 17 ~n~~d~~~fr~lVvWLEDqKIR~Y~iedR---------~~L---R~i~s~~W~~~~~kYl~dl~cP~------~~~~~~~ 78 (249)
T PF10036_consen 17 FNIDDEEEFRSLVVWLEDQKIRHYKIEDR---------EKL---RNIDSSDWPKAFEKYLKDLGCPF------SSESRQE 78 (249)
T ss_pred CCCCCHHHHHHHHHHHhhhhhccCCHhhH---------HHH---hcCCcchHHHHHHHHHHhcCCCC------cchhHHH
Confidence 467889999999999988 432210000 001 1111 244566778889988 4456678
Q ss_pred HHHHHHHHHHh
Q psy15004 92 LLVGILTQIRL 102 (167)
Q Consensus 92 lf~~l~~~i~~ 102 (167)
+++||+..+..
T Consensus 79 ~ldWLL~~AV~ 89 (249)
T PF10036_consen 79 QLDWLLGLAVR 89 (249)
T ss_pred HHHHHHHHHHH
Confidence 88888876664
No 454
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=31.78 E-value=1.2e+02 Score=22.75 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=38.3
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC----CCCCceEEEEEecCCCCCc-cccChhHHHHHHHhc
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKD----SIRSKAVILVANKTDLVRC-RVVTDEDGKDMATAY 74 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~----~~~~~piilvgNK~Dl~~~-~~v~~~~~~~~~~~~ 74 (167)
+.|++|++=|++|.......++|.+.+.+.. ...++|++.|.--=|.-.+ ....++....+.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 6899999999999665444455555544332 1345676666444476532 223344555565554
No 455
>PRK09739 hypothetical protein; Provisional
Probab=31.56 E-value=84 Score=23.12 Aligned_cols=31 Identities=6% Similarity=0.188 Sum_probs=21.5
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWK 38 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~ 38 (167)
+.+||++|+++-+-.-.---.++.|++.+..
T Consensus 77 l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~ 107 (199)
T PRK09739 77 LLEHDALVFVFPLWWYSFPAMLKGYIDRVWN 107 (199)
T ss_pred HHhCCEEEEECchhhhcchHHHHHHHHHHcc
Confidence 5679999999887553222345778888753
No 456
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.55 E-value=1.7e+02 Score=24.86 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=30.8
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCc-eEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSK-AVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~-piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+|.+++|.|.+... +..+....+.. .+ ..-+|.||.|-... .=.+..++...+.|+..++
T Consensus 205 ~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~a~----~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 205 KPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGTAK----GGGALSAVAETGAPIKFIG 266 (437)
T ss_pred cccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCCCc----ccHHHHHHHHHCcCEEEEe
Confidence 578899999986531 22222233321 12 23566799996421 1122334444566554444
No 457
>PRK10867 signal recognition particle protein; Provisional
Probab=31.49 E-value=2e+02 Score=24.44 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=32.6
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
..+.+++|.|.+.. +++.+....+... -+ ..-+|.||.|-.... -.+.......++|+..++.
T Consensus 213 ~p~evllVlda~~g---q~av~~a~~F~~~---~~-i~giIlTKlD~~~rg----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 213 NPDEILLVVDAMTG---QDAVNTAKAFNEA---LG-LTGVILTKLDGDARG----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred CCCeEEEEEecccH---HHHHHHHHHHHhh---CC-CCEEEEeCccCcccc----cHHHHHHHHHCcCEEEEeC
Confidence 46778999997642 2223333333221 01 234556999953211 1244455566776655544
No 458
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=30.99 E-value=85 Score=23.96 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=30.7
Q ss_pred CCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 9 ETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.++|.+|++=|+++.. ..+.+..+++.+... +.|+++|---.|-
T Consensus 30 ~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l----~~pv~~V~GNhD~ 74 (224)
T cd07388 30 TGADAIVLIGNLLPKAAKSEDYAAFFRILGEA----HLPTFYVPGPQDA 74 (224)
T ss_pred cCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc----CCceEEEcCCCCh
Confidence 4799999999999865 355555566666432 4678777666773
No 459
>PRK00170 azoreductase; Reviewed
Probab=30.36 E-value=74 Score=23.20 Aligned_cols=30 Identities=3% Similarity=0.074 Sum_probs=20.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALW 37 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~ 37 (167)
+.+||++|+++-+=.-.---.++.|++.+.
T Consensus 84 i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 84 FLAADKIVIAAPMYNFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHCCEEEEeecccccCCcHHHHHHHHhhe
Confidence 567999999987644222234577888874
No 460
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=30.33 E-value=2.4e+02 Score=21.35 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=25.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKT 54 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~ 54 (167)
-||.+|++...+ +.++..+...++.+.......+.++. +|.|+.
T Consensus 141 aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 141 KAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred cccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 589999998864 55666665555554333222244554 444653
No 461
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=29.77 E-value=1.4e+02 Score=20.50 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=24.7
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
..+.+|++|++ .---.+++++-..+...+-. ...++|++++...
T Consensus 50 m~~~sda~I~l--PGG~GTl~El~~~~~~~~l~-~~~~~Piil~~~~ 93 (133)
T PF03641_consen 50 MIESSDAFIAL--PGGIGTLDELFEALTLMQLG-RHNKVPIILLNID 93 (133)
T ss_dssp HHHHESEEEEE--S-SHHHHHHHHHHHHHHHTT-SSTS-EEEEEECG
T ss_pred HHHhCCEEEEE--ecCCchHHHHHHHHHHHhhc-cccCCCEEEeCCc
Confidence 45668888887 33345666665444433222 2345598888754
No 462
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=29.15 E-value=1e+02 Score=20.83 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDL 56 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl 56 (167)
.++|.+|++=|+++.........+++.+.+. ...+ +++.|| .|.
T Consensus 18 ~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~---~~~~~~~v~GN-HD~ 62 (135)
T cd07379 18 PDGDVLIHAGDLTERGTLEELQKFLDWLKSL---PHPHKIVIAGN-HDL 62 (135)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHhC---CCCeEEEEECC-CCC
Confidence 5789999999988754333333333333222 1223 456677 564
No 463
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=29.11 E-value=1.3e+02 Score=19.79 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=25.6
Q ss_pred cccCCCcEEEEEEeCCC--HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 6 ANYETPHGFIIVYSTID--LASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~--~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
..+++||++|..+|... ..+.-++- | ... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG-~---A~a----lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELG-Y---AYA----LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHH-H---HHH----TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHH-H---HHH----CCCEEEEEEcCCcc
Confidence 34678999999998743 32221111 1 111 26799988877664
No 464
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=29.09 E-value=96 Score=25.45 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCcEEEEE---EeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEE-EecCC
Q psy15004 10 TPHGFIIV---YSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTD 55 (167)
Q Consensus 10 ~ad~~i~v---~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilv-gNK~D 55 (167)
++|++|+- ||..+| +...+....+.++... ..++|++++ ||-=.
T Consensus 40 ~vD~vliAGDlFd~~~P-s~~a~~~~~~~l~~l~-~~~Ipv~~I~GNHD~ 87 (390)
T COG0420 40 KVDFVLIAGDLFDTNNP-SPRALKLFLEALRRLK-DAGIPVVVIAGNHDS 87 (390)
T ss_pred cCCEEEEccccccCCCC-CHHHHHHHHHHHHHhc-cCCCcEEEecCCCCc
Confidence 56999995 444443 5566666666665553 257887665 66644
No 465
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=29.03 E-value=56 Score=28.35 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=25.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
.|+|.-||.++.||+.+++.++..+....
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~ 278 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAPKPE 278 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCCCc
Confidence 37889999999999999999999886543
No 466
>KOG4271|consensus
Probab=28.75 E-value=68 Score=29.91 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=28.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhhhCCCCC
Q psy15004 75 DCKFIETSVGINHNVDELLVGILTQIRLKLDNPPE 109 (167)
Q Consensus 75 ~~~~~e~SA~~~~~v~~lf~~l~~~i~~~~~~~~~ 109 (167)
+.+++|||+..+.||+-+|..|++.+......+..
T Consensus 3 ~l~~vetss~~nvnve~~f~tl~~l~~ksr~~~k~ 37 (1100)
T KOG4271|consen 3 NLPVVETSSVKNVNVEYLFGTLVQLCDKSRKKVKI 37 (1100)
T ss_pred CCCceeecccccccHHHHHHHHHHHHHhhccccee
Confidence 46789999999999999999999988765544443
No 467
>PRK09602 translation-associated GTPase; Reviewed
Probab=28.01 E-value=67 Score=26.78 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=13.2
Q ss_pred cCCCcEEEEEEeCC
Q psy15004 8 YETPHGFIIVYSTI 21 (167)
Q Consensus 8 ~~~ad~~i~v~d~t 21 (167)
+++||++++|+|+.
T Consensus 100 ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 100 LRQADALIHVVDAS 113 (396)
T ss_pred HHHCCEEEEEEeCC
Confidence 88999999999997
No 468
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=27.77 E-value=65 Score=19.52 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=5.7
Q ss_pred CCceEEEEEec
Q psy15004 43 RSKAVILVANK 53 (167)
Q Consensus 43 ~~~piilvgNK 53 (167)
..+|.|+++.+
T Consensus 48 ~~vP~i~i~g~ 58 (79)
T TIGR02181 48 RTVPQIFIGDV 58 (79)
T ss_pred CCcCEEEECCE
Confidence 34566555443
No 469
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=27.40 E-value=1.1e+02 Score=20.20 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
+.....++|+|=-+.-. . ..+++.++......++++|++|+-
T Consensus 84 ~~~~~~~lviDe~~~l~-~--~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S--DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T--HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C--HHHHHHHHHHHhCCCCeEEEEECh
Confidence 33444778888555431 1 333333333333567899999976
No 470
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=26.76 E-value=2e+02 Score=20.59 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=23.5
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
..+|.+|+-|-=+ =+.+..++..+... -..+.+++|||-|-.
T Consensus 68 ~~~D~vvly~PKa----K~e~~~lL~~l~~~-L~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 68 QDFDTVVLYWPKA----KAEAQYLLANLLSH-LPPGTEIFVVGENKG 109 (155)
T ss_dssp TT-SEEEEE--SS----HHHHHHHHHHHHTT-S-TT-EEEEEEEGGG
T ss_pred cCCCEEEEEccCc----HHHHHHHHHHHHHh-CCCCCEEEEEecCcc
Confidence 3578888888533 23444456666443 345789999996654
No 471
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=26.52 E-value=65 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=25.3
Q ss_pred ccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 7 NYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
-+.+||++|++.-+-. +..+.+.-.|+. . ....+.|++++++-
T Consensus 63 ~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~---~-~~l~~K~v~iiat~ 108 (191)
T PRK10569 63 QLAQADGLIVATPVYKASFSGALKTLLDLLP---E-RALEHKVVLPLATG 108 (191)
T ss_pred HHHHCCEEEEECCccCCCCCHHHHHHHHhCC---h-hhhCCCEEEEEEec
Confidence 3567999999776533 334444333432 1 12346788888885
No 472
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.45 E-value=3.2e+02 Score=23.19 Aligned_cols=40 Identities=20% Similarity=0.077 Sum_probs=23.1
Q ss_pred CCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 10 TPHGFIIVYSTIDL-ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 10 ~ad~~i~v~d~t~~-~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
+.|-+++|.|.+-- +..+.+ ..+.+. -.+.-+|.||.|-.
T Consensus 212 ~p~e~lLVlda~~Gq~a~~~a----~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 212 QPDNIIFVMDGSIGQAAEAQA----KAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred CCcEEEEEeccccChhHHHHH----HHHHhc----cCCcEEEEECccCC
Confidence 46788999997642 222222 222211 12567788999964
No 473
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=26.34 E-value=1.8e+02 Score=18.44 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=19.4
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHH
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQ 34 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~ 34 (167)
..+..+|.+|++.+.+ ..++..+..+++
T Consensus 57 ~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 57 NALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred HHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 4456788898888764 556776666655
No 474
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=26.11 E-value=3e+02 Score=21.08 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=27.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKT 54 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~ 54 (167)
-||.+|++.+. ++.++..+...++.+.......+++++ +|.|+.
T Consensus 143 aad~viIp~~p-~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 143 KAQEVYIVASG-EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred cCceEEEeccc-cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 58889998875 466777766665544322222456544 778875
No 475
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=26.05 E-value=64 Score=23.18 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=20.0
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
+..||++|++.-.-+-.---.++.|++.+.. ....+.|+.++++-
T Consensus 63 i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~-~~l~~K~v~~~~~g 107 (171)
T TIGR03567 63 VAQADGVVVATPVYKASYSGVLKALLDLLPQ-RALRGKVVLPIATG 107 (171)
T ss_pred HHHCCEEEEECCcccCCCCHHHHHHHHhCCh-hhhCCCEEEEEEcC
Confidence 3467777776544321111122334443321 12235566666553
No 476
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.02 E-value=1.2e+02 Score=20.44 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=20.7
Q ss_pred cCCCcEEEEEEeCCCHHHH--HHHHHHHHHHHhhCCCCCceEEEEEe
Q psy15004 8 YETPHGFIIVYSTIDLASF--HVAEQCLQALWKKDSIRSKAVILVAN 52 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~--~~~~~~~~~l~~~~~~~~~piilvgN 52 (167)
+.++|.+|++..+-....+ ..+..|++.+... ...+.+++++++
T Consensus 43 l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~-~~~gk~~~vfgt 88 (140)
T TIGR01753 43 LLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDI-DLGGKKVALFGS 88 (140)
T ss_pred HhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhC-CCCCCEEEEEec
Confidence 3456777776655322111 2344455554322 123455666554
No 477
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.41 E-value=2.8e+02 Score=20.46 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=33.3
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 15 i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
++.++++...+...+.++++.+++.....++++++-|.=. .+ .+++..|...+-..|
T Consensus 138 ~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--------~~----~~~~~~gad~~~~da 194 (197)
T TIGR02370 138 MLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPV--------TQ----DWADKIGADVYGENA 194 (197)
T ss_pred EEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhc--------CH----HHHHHhCCcEEeCCh
Confidence 4455555555677788888888765333345555544332 11 366677876665444
No 478
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=25.00 E-value=2.5e+02 Score=19.76 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=6.4
Q ss_pred CCcEEEEEEeCCC
Q psy15004 10 TPHGFIIVYSTID 22 (167)
Q Consensus 10 ~ad~~i~v~d~t~ 22 (167)
+.|.+++.+-.+|
T Consensus 59 ~~d~v~i~~G~ND 71 (183)
T cd04501 59 KPAVVIIMGGTND 71 (183)
T ss_pred CCCEEEEEeccCc
Confidence 3455555554433
No 479
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=24.67 E-value=1.3e+02 Score=22.79 Aligned_cols=42 Identities=14% Similarity=-0.038 Sum_probs=24.0
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
.++|++|+.=|+++....+.....+..+... ....+++.||-
T Consensus 40 ~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l---~~~v~~V~GNH 81 (232)
T cd07393 40 APEDIVLIPGDISWAMKLEEAKLDLAWIDAL---PGTKVLLKGNH 81 (232)
T ss_pred CCCCEEEEcCCCccCCChHHHHHHHHHHHhC---CCCeEEEeCCc
Confidence 3799999999998754444333333333222 12235555665
No 480
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=24.52 E-value=75 Score=24.98 Aligned_cols=77 Identities=8% Similarity=0.115 Sum_probs=43.1
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCH
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNV 89 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v 89 (167)
.+..+|+.-|++.. ++..|+..+-+. .++|+++|++|.+|- ..+-.. .+..+-+.- .|..-
T Consensus 148 KAkLVIIA~DVsPi----e~vk~LpaLCrk---~~VPY~iVktKaeLG----------~AIGkK-travVAItD-~g~ed 208 (263)
T PTZ00222 148 QARMVVIANNVDPV----ELVLWMPNLCRA---NKIPYAIVKDMARLG----------DAIGRK-TATCVAITD-VNAED 208 (263)
T ss_pred CceEEEEeCCCCHH----HHHHHHHHHHHh---cCCCEEEECCHHHHH----------HHHCCC-CCeEEEEee-CCccc
Confidence 46677777776532 233455555332 489999999998762 111111 122332222 23344
Q ss_pred HHHHHHHHHHHHhhhC
Q psy15004 90 DELLVGILTQIRLKLD 105 (167)
Q Consensus 90 ~~lf~~l~~~i~~~~~ 105 (167)
...|..|++.+...+.
T Consensus 209 ~~~l~~lv~~~~~~~n 224 (263)
T PTZ00222 209 EAALKNLIRSVNARFL 224 (263)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 5677888887776654
No 481
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=24.11 E-value=2.6e+02 Score=19.62 Aligned_cols=49 Identities=4% Similarity=-0.127 Sum_probs=29.0
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHH--------HHhhCCCCCceEEEEEecCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQA--------LWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~--------l~~~~~~~~~piilvgNK~D 55 (167)
.|++ .+.+++.+|+++++-.+..-.|+.. ..+.-....-|.+.+..+..
T Consensus 51 ~fl~-~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP~~avI~~~~ 107 (136)
T cd02990 51 QYLS-QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLPAILIIMGKR 107 (136)
T ss_pred HHHH-cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCCeEEEEEecC
Confidence 3555 5899999999987644433333221 11111245678888877765
No 482
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=23.38 E-value=83 Score=18.10 Aligned_cols=15 Identities=20% Similarity=0.065 Sum_probs=11.4
Q ss_pred cCCCcEEEEEEeCCC
Q psy15004 8 YETPHGFIIVYSTID 22 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~ 22 (167)
+-+++++++||+.++
T Consensus 30 LC~~~v~~iv~~~~g 44 (51)
T PF00319_consen 30 LCGVDVALIVFSPDG 44 (51)
T ss_dssp HHT-EEEEEEEETTS
T ss_pred ecCCeEEEEEECCCC
Confidence 457999999999765
No 483
>PRK05569 flavodoxin; Provisional
Probab=23.19 E-value=1.4e+02 Score=20.28 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=35.1
Q ss_pred cCCCcEEEEEEeCCCHHHH--HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASF--HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~--~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+.++|++++..-+-....+ ..+..+++.+... ...+.+++++++= ....... ......+....|+.++.
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~-~~~~K~v~~f~t~-g~~~~~~--~~~~~~~l~~~g~~~~~ 116 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLT-PNENKKCILFGSY-GWDNGEF--MKLWKDRMKDYGFNVIG 116 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhcc-CcCCCEEEEEeCC-CCCCCcH--HHHHHHHHHHCCCeEee
Confidence 4568888888765322111 3455666666432 2346788888763 2211111 22334445556665443
No 484
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=23.14 E-value=3.8e+02 Score=21.18 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=49.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHH---HHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE---
Q psy15004 8 YETPHGFIIVYSTIDLASFHVA---EQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET--- 81 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~---~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~--- 81 (167)
...||.+|++.+. +..++..+ ...++.+... +..-.++-+|.|+.+.. ..++.+++.++++++..
T Consensus 145 ~~~Ad~viVvt~~-e~~sl~~a~~l~k~v~~~~~~-~~~v~i~GVV~N~~~~~-------~~~~~~~~~~~i~vLg~IP~ 215 (296)
T TIGR02016 145 RSLAEEVIVIGSN-DRQSLYVANNICNAVEYFRKL-GGRVGLLGLVVNRDDGS-------GEAQAFAREVGIPVLAAIPA 215 (296)
T ss_pred hhhCCeEEEEecc-hHHHHHHHHHHHHHHHHHHHc-CCCCcceEEEEeCCCCc-------cHHHHHHHHcCCCeEEECCC
Confidence 3468888888764 34455443 4444444332 11122466889999742 23455566666544321
Q ss_pred -------ec------C-CCCCHHHHHHHHHHHHHhhhCC
Q psy15004 82 -------SV------G-INHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 82 -------SA------~-~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
+. . ......+.|..|++.+......
T Consensus 216 d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~~ 254 (296)
T TIGR02016 216 DEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPPL 254 (296)
T ss_pred CHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 00 0 1122678899999988876543
No 485
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.68 E-value=76 Score=20.20 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=9.5
Q ss_pred CCceEEEEEecCCC
Q psy15004 43 RSKAVILVANKTDL 56 (167)
Q Consensus 43 ~~~piilvgNK~Dl 56 (167)
.++|++.+++|.+|
T Consensus 49 ~~Vpv~~~~t~~eL 62 (82)
T PRK13601 49 KSIKIVYIDTMKEL 62 (82)
T ss_pred CCCCEEEeCCHHHH
Confidence 46777777777665
No 486
>PHA03050 glutaredoxin; Provisional
Probab=22.52 E-value=81 Score=21.01 Aligned_cols=6 Identities=17% Similarity=-0.302 Sum_probs=2.6
Q ss_pred eEEEEe
Q psy15004 77 KFIETS 82 (167)
Q Consensus 77 ~~~e~S 82 (167)
|.+.+-
T Consensus 71 P~IfI~ 76 (108)
T PHA03050 71 PRIFFG 76 (108)
T ss_pred CEEEEC
Confidence 444443
No 487
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=22.49 E-value=2.5e+02 Score=24.44 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.5
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+.|+|++|.-+...+ ..++..+++..++++++.+
T Consensus 221 krPvi~~G~g~~~~~----a~~~l~~lae~l~~Pv~tt 254 (569)
T PRK08327 221 ERPVIITWRAGRTAE----GFASLRRLAEELAIPVVEY 254 (569)
T ss_pred CCCEEEEecccCCcc----cHHHHHHHHHHhCCCEEec
Confidence 679999999986532 2467788999999988853
No 488
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=22.46 E-value=3.6e+02 Score=20.69 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=27.5
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTD 55 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~D 55 (167)
-||.+|++... ++.++..+...++.+.......+..+ -+|.|+..
T Consensus 142 aad~vlIp~~~-e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 142 KAEEIYIVCSG-EMMAMYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred cccEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 68899999854 56778777666555443322234544 36678653
No 489
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=22.16 E-value=2.2e+02 Score=19.25 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhCCCCCceEEEEEecC
Q psy15004 26 FHVAEQCLQALWKKDSIRSKAVILVANKT 54 (167)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~piilvgNK~ 54 (167)
|..+.++++.+.+. ++++.++-|+.
T Consensus 31 ~~gv~e~L~~Lk~~----g~~l~i~Sn~~ 55 (128)
T TIGR01681 31 IKEIRDKLQTLKKN----GFLLALASYND 55 (128)
T ss_pred HHHHHHHHHHHHHC----CeEEEEEeCCC
Confidence 66777788887543 67888888873
No 490
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=22.06 E-value=2.6e+02 Score=18.82 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=46.9
Q ss_pred cccCCCcEEEE-EEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 6 ANYETPHGFII-VYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 6 ~y~~~ad~~i~-v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
.|+++-..++- .|.+.+ +..+.+.+++..+.+. ++--+++...-.+ ..+ +++..++|.++++|.|++..
T Consensus 38 ~~l~~gElvlttg~~~~~-~~~~~~~~~i~~L~~~----~~agL~i~~~~~~---~~i-P~~~i~~A~~~~lPli~ip~- 107 (123)
T PF07905_consen 38 DWLRGGELVLTTGYALRD-DDEEELREFIRELAEK----GAAGLGIKTGRYL---DEI-PEEIIELADELGLPLIEIPW- 107 (123)
T ss_pred HhCCCCeEEEECCcccCC-CCHHHHHHHHHHHHHC----CCeEEEEeccCcc---ccC-CHHHHHHHHHcCCCEEEeCC-
Confidence 34555555444 233332 1123456677777543 3333443333222 133 46788899999999999887
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15004 85 INHNVDELLVGILTQI 100 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i 100 (167)
.....++...+.++|
T Consensus 108 -~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 108 -EVPFSDITREVMRAI 122 (123)
T ss_pred -CCCHHHHHHHHHHHh
Confidence 455556666665554
No 491
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=21.96 E-value=2.1e+02 Score=21.10 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=33.5
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 15 IIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 15 i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
++.++.+...++..+..+++.+++.....++++++-|.=.. . .++...|+.++--.|
T Consensus 136 ~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~--------~----~~~~~~GaD~~~~da 192 (201)
T cd02070 136 ILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVN--------Q----EFADEIGADGYAEDA 192 (201)
T ss_pred EEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCC--------H----HHHHHcCCcEEECCH
Confidence 44445545556788888999987653223566666554332 1 256667776665433
No 492
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.92 E-value=2.1e+02 Score=17.83 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=21.1
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
.|.+++=++..+.+.++ ++..+.... +++|+|++.+..|
T Consensus 44 ~d~iiid~~~~~~~~~~----~~~~i~~~~--~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 44 PDLIIIDLELPDGDGLE----LLEQIRQIN--PSIPIIVVTDEDD 82 (112)
T ss_dssp ESEEEEESSSSSSBHHH----HHHHHHHHT--TTSEEEEEESSTS
T ss_pred ceEEEEEeeeccccccc----ccccccccc--ccccEEEecCCCC
Confidence 34444444445433333 444444332 5788888887766
No 493
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.87 E-value=1.1e+02 Score=22.58 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=21.1
Q ss_pred CcEEEEEEeCC-CHHHHH-HHHHHHHHHHhhCCCCCceEEEEE
Q psy15004 11 PHGFIIVYSTI-DLASFH-VAEQCLQALWKKDSIRSKAVILVA 51 (167)
Q Consensus 11 ad~~i~v~d~t-~~~s~~-~~~~~~~~l~~~~~~~~~piilvg 51 (167)
+|++++-+-++ +++.|. .+..++..|+.. .+++||++|-
T Consensus 60 a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~--hP~tPIllv~ 100 (178)
T PF14606_consen 60 ADLIVLDCGPNMSPEEFRERLDGFVKTIREA--HPDTPILLVS 100 (178)
T ss_dssp -SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE
T ss_pred CCEEEEEeecCCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence 44444444332 244454 456678888654 4688998875
No 494
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=21.82 E-value=1.6e+02 Score=18.51 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=21.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.|+.+=...++++++.++.+.+++.+.
T Consensus 15 ~yl~iv~~~~~d~d~Al~eM~e~A~~l 41 (74)
T TIGR03884 15 YYLGIVSTESDNVDEIVENLREKVKAK 41 (74)
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 566665577889999999999888753
No 495
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=21.59 E-value=1.8e+02 Score=22.69 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=38.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
++|+++++--.-...+-+.+..|+..+... .++|+++- |.=... ...++.+...++++--++..+.-|.
T Consensus 96 Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~---~~~pi~iY-n~P~~t-g~~ls~~~l~~L~~~~nv~giK~s~ 164 (289)
T PF00701_consen 96 GADAVLVIPPYYFKPSQEELIDYFRAIADA---TDLPIIIY-NNPART-GNDLSPETLARLAKIPNVVGIKDSS 164 (289)
T ss_dssp T-SEEEEEESTSSSCCHHHHHHHHHHHHHH---SSSEEEEE-EBHHHH-SSTSHHHHHHHHHTSTTEEEEEESS
T ss_pred CceEEEEeccccccchhhHHHHHHHHHHhh---cCCCEEEE-ECCCcc-ccCCCHHHHHHHhcCCcEEEEEcCc
Confidence 689998886654455667788888888654 46788753 321110 1223345555565532344444333
No 496
>KOG0465|consensus
Probab=21.50 E-value=1.3e+02 Score=27.02 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|++-=||..+.||+-+++.+++.+....+
T Consensus 284 PVl~GSAlKNkGVQPlLDAVvdYLPsP~E 312 (721)
T KOG0465|consen 284 PVLCGSALKNKGVQPLLDAVVDYLPSPSE 312 (721)
T ss_pred eEEechhhcccCcchHHHHHHHhCCChhh
Confidence 56667999999999999999988876543
No 497
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=21.48 E-value=3.7e+02 Score=20.42 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=46.6
Q ss_pred CCCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 9 ETPHGFIIVYSTIDLAS--FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s--~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
.+||-+=+|.++....+ ++.+.+.+..+.... .++++=++..-.+|.++ + ...+-..+...|+.|+.||.-.
T Consensus 86 ~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~--~~~~lKvIlEt~~L~~e-~--i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 86 NGADEIDMVINIGALKSGDWDAVEADIRAVVEAA--GGAVLKVIIETCLLTDE-E--KVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred cCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhc--CCceEEEEeecCcCCHH-H--HHHHHHHHHHhCCCEEEcCCCC
Confidence 45777778888866443 666666666665532 24556566666777532 2 2455566778899999998765
No 498
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=21.32 E-value=2.1e+02 Score=20.75 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=26.1
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+.|+|+||.-+-.. -..++..++++..+++++.+-
T Consensus 28 KRPvIivG~ga~~~----~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 28 KRPLLIVGPENLED----EEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred CCcEEEECCCcCcc----cHHHHHHHHHHHHCCCEEEcC
Confidence 67999999877321 135677889999999988654
No 499
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.81 E-value=3.1e+02 Score=19.19 Aligned_cols=40 Identities=15% Similarity=-0.051 Sum_probs=30.9
Q ss_pred cChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 62 VTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 62 v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++.++..+-+.+.+...+-+|+..+.... .+..+.+.+.+
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~-~~~~~~~~l~~ 78 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEI-DCKGLRQKCDE 78 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHH-HHHHHHHHHHH
Confidence 45677778888889999999999998765 45566666654
No 500
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=20.58 E-value=1.2e+02 Score=22.92 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=0.0
Q ss_pred ccCCCcEEEEE-EeCCC-----HHHHHHHHHHHHHHHhhCCCCCceEEEEE
Q psy15004 7 NYETPHGFIIV-YSTID-----LASFHVAEQCLQALWKKDSIRSKAVILVA 51 (167)
Q Consensus 7 y~~~ad~~i~v-~d~t~-----~~s~~~~~~~~~~l~~~~~~~~~piilvg 51 (167)
|||++....+. -+..+ .-.+.++..-.+....+ ...+.|+||+|
T Consensus 52 ~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~-~n~GRPfILaG 101 (207)
T PF11288_consen 52 RYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLAN-YNNGRPFILAG 101 (207)
T ss_pred hhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHh-cCCCCCEEEEE
Done!