Query psy15004
Match_columns 167
No_of_seqs 265 out of 1267
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:00:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 3.8E-25 1.3E-29 166.9 10.6 101 2-103 77-177 (216)
2 2g3y_A GTP-binding protein GEM 99.9 3.6E-22 1.2E-26 150.0 12.2 102 3-104 104-205 (211)
3 3cbq_A GTP-binding protein REM 99.9 3.4E-21 1.1E-25 142.3 11.8 101 3-103 89-189 (195)
4 2cjw_A GTP-binding protein GEM 99.9 6.4E-21 2.2E-25 140.5 12.5 102 3-104 73-174 (192)
5 2nzj_A GTP-binding protein REM 99.9 1.1E-20 3.6E-25 135.8 13.3 102 3-104 70-171 (175)
6 3q72_A GTP-binding protein RAD 99.9 8.2E-21 2.8E-25 135.4 12.4 101 3-103 65-165 (166)
7 3q85_A GTP-binding protein REM 99.8 8.6E-21 2.9E-25 135.7 10.8 100 3-102 68-167 (169)
8 3t5g_A GTP-binding protein RHE 99.8 1.6E-20 5.5E-25 136.0 11.7 102 3-104 70-171 (181)
9 2fu5_C RAS-related protein RAB 99.8 2.8E-20 9.6E-25 134.9 13.0 101 3-104 73-173 (183)
10 3ihw_A Centg3; RAS, centaurin, 99.8 2.2E-20 7.5E-25 136.7 11.5 98 7-104 82-182 (184)
11 2hup_A RAS-related protein RAB 99.8 3.2E-20 1.1E-24 137.5 12.4 102 3-105 94-196 (201)
12 3kkq_A RAS-related protein M-R 99.8 2E-20 6.9E-25 135.6 11.1 100 3-102 82-182 (183)
13 3dz8_A RAS-related protein RAB 99.8 3E-20 1E-24 136.1 12.1 102 3-105 88-189 (191)
14 3tkl_A RAS-related protein RAB 99.8 7.7E-20 2.6E-24 133.8 13.4 103 2-105 80-182 (196)
15 2ew1_A RAS-related protein RAB 99.8 5.6E-20 1.9E-24 136.6 12.3 102 3-105 91-192 (201)
16 3oes_A GTPase rhebl1; small GT 99.8 3.1E-20 1.1E-24 137.2 10.7 103 3-105 88-190 (201)
17 2a5j_A RAS-related protein RAB 99.8 7E-20 2.4E-24 134.1 12.4 101 3-104 86-186 (191)
18 2gf9_A RAS-related protein RAB 99.8 1.1E-19 3.7E-24 132.8 13.2 102 2-104 86-187 (189)
19 2fn4_A P23, RAS-related protei 99.8 4.1E-20 1.4E-24 133.2 10.8 104 3-106 73-176 (181)
20 3q3j_B RHO-related GTP-binding 99.8 5.2E-20 1.8E-24 137.7 10.7 102 2-105 90-206 (214)
21 2o52_A RAS-related protein RAB 99.8 1.2E-19 4.2E-24 134.1 12.4 104 3-107 90-193 (200)
22 2iwr_A Centaurin gamma 1; ANK 99.8 9.7E-20 3.3E-24 131.5 11.5 99 5-103 67-170 (178)
23 2atv_A RERG, RAS-like estrogen 99.8 5.5E-20 1.9E-24 135.2 10.4 103 2-104 90-193 (196)
24 1u8z_A RAS-related protein RAL 99.8 6E-20 2E-24 130.5 10.1 100 3-102 68-167 (168)
25 2bme_A RAB4A, RAS-related prot 99.8 1.3E-19 4.4E-24 131.6 12.1 103 3-106 75-177 (186)
26 2bcg_Y Protein YP2, GTP-bindin 99.8 3.2E-19 1.1E-23 131.9 14.0 101 3-104 73-173 (206)
27 2g6b_A RAS-related protein RAB 99.8 2E-19 6.9E-24 129.7 12.2 100 3-103 76-175 (180)
28 1c1y_A RAS-related protein RAP 99.8 8.7E-20 3E-24 129.9 9.9 100 2-101 66-166 (167)
29 2bov_A RAla, RAS-related prote 99.8 2E-19 6.7E-24 132.6 12.1 101 3-103 78-178 (206)
30 1z0f_A RAB14, member RAS oncog 99.8 1.5E-19 5E-24 130.1 11.1 99 3-102 80-178 (179)
31 3tw8_B RAS-related protein RAB 99.8 3.3E-19 1.1E-23 128.4 13.0 100 3-104 74-173 (181)
32 3bc1_A RAS-related protein RAB 99.8 1.5E-19 5.1E-24 131.5 11.3 102 3-104 86-187 (195)
33 1z08_A RAS-related protein RAB 99.8 1.4E-19 4.7E-24 129.3 10.8 99 3-102 71-169 (170)
34 3reg_A RHO-like small GTPase; 99.8 2.2E-19 7.6E-24 131.6 12.1 100 2-103 86-189 (194)
35 3c5c_A RAS-like protein 12; GD 99.8 5E-20 1.7E-24 134.9 8.6 98 5-102 86-186 (187)
36 2a9k_A RAS-related protein RAL 99.8 1.6E-19 5.5E-24 130.7 10.8 101 3-103 82-182 (187)
37 1zbd_A Rabphilin-3A; G protein 99.8 3.5E-19 1.2E-23 131.3 12.6 101 3-104 73-173 (203)
38 3cpj_B GTP-binding protein YPT 99.8 1.7E-19 5.7E-24 135.5 11.0 103 3-106 78-180 (223)
39 1r2q_A RAS-related protein RAB 99.8 1.8E-19 6E-24 128.4 10.7 97 3-100 71-167 (170)
40 2efe_B Small GTP-binding prote 99.8 2.3E-19 7.8E-24 129.5 11.3 99 3-102 77-175 (181)
41 2oil_A CATX-8, RAS-related pro 99.8 3.8E-19 1.3E-23 130.2 12.1 102 2-104 89-190 (193)
42 2f7s_A C25KG, RAS-related prot 99.8 2.5E-19 8.5E-24 133.6 11.2 102 3-104 100-201 (217)
43 1z06_A RAS-related protein RAB 99.8 2.1E-19 7.1E-24 131.3 10.5 100 2-101 85-187 (189)
44 1g16_A RAS-related protein SEC 99.8 3.6E-19 1.2E-23 127.0 11.5 99 3-103 68-166 (170)
45 2hxs_A RAB-26, RAS-related pro 99.8 2.3E-19 7.9E-24 129.2 10.6 101 2-102 71-173 (178)
46 1z0j_A RAB-22, RAS-related pro 99.8 4.3E-19 1.5E-23 126.6 11.8 97 3-100 71-167 (170)
47 1kao_A RAP2A; GTP-binding prot 99.8 1.6E-19 5.5E-24 128.1 9.5 100 3-102 67-166 (167)
48 2yc2_C IFT27, small RAB-relate 99.8 4E-19 1.4E-23 130.9 11.9 102 3-104 89-194 (208)
49 2il1_A RAB12; G-protein, GDP, 99.8 2.1E-19 7.3E-24 131.9 10.2 100 3-103 91-191 (192)
50 2atx_A Small GTP binding prote 99.8 8.6E-19 2.9E-23 128.4 13.1 98 2-101 81-192 (194)
51 2fg5_A RAB-22B, RAS-related pr 99.8 2.3E-19 7.9E-24 131.6 9.7 99 3-102 88-186 (192)
52 3t1o_A Gliding protein MGLA; G 99.8 4.6E-19 1.6E-23 129.4 11.2 100 2-105 89-195 (198)
53 1x3s_A RAS-related protein RAB 99.8 8.2E-19 2.8E-23 128.0 12.3 100 3-103 80-179 (195)
54 2j0v_A RAC-like GTP-binding pr 99.8 2.4E-19 8.4E-24 133.1 9.5 99 3-103 73-181 (212)
55 1ek0_A Protein (GTP-binding pr 99.8 2.5E-19 8.6E-24 127.6 9.1 97 3-100 68-167 (170)
56 2q3h_A RAS homolog gene family 99.8 8.9E-19 3.1E-23 129.0 12.2 100 3-104 84-197 (201)
57 1z2a_A RAS-related protein RAB 99.8 3.3E-19 1.1E-23 126.9 9.4 98 3-102 70-167 (168)
58 4dsu_A GTPase KRAS, isoform 2B 99.8 1E-18 3.6E-23 126.7 12.2 102 2-104 67-168 (189)
59 2p5s_A RAS and EF-hand domain 99.8 3.4E-19 1.2E-23 131.4 9.1 99 3-102 93-197 (199)
60 1m7b_A RND3/RHOE small GTP-bin 99.8 7E-19 2.4E-23 128.1 10.5 98 3-102 71-183 (184)
61 1ky3_A GTP-binding protein YPT 99.8 1.9E-18 6.4E-23 124.5 12.3 102 3-104 74-180 (182)
62 3cph_A RAS-related protein SEC 99.8 1.3E-18 4.5E-23 128.9 11.5 101 3-105 85-185 (213)
63 3bwd_D RAC-like GTP-binding pr 99.8 9.3E-19 3.2E-23 126.4 10.1 98 2-101 71-180 (182)
64 3clv_A RAB5 protein, putative; 99.8 4.8E-18 1.7E-22 124.1 13.9 98 3-104 109-206 (208)
65 3con_A GTPase NRAS; structural 99.8 3.2E-18 1.1E-22 124.8 12.8 100 3-103 85-184 (190)
66 2ce2_X GTPase HRAS; signaling 99.8 2.4E-18 8.3E-23 121.7 11.7 99 3-102 67-165 (166)
67 1wms_A RAB-9, RAB9, RAS-relate 99.8 3.7E-18 1.3E-22 122.7 12.4 99 3-102 72-174 (177)
68 1gwn_A RHO-related GTP-binding 99.8 1.5E-18 5.3E-23 129.1 10.6 98 3-102 92-204 (205)
69 2y8e_A RAB-protein 6, GH09086P 99.8 6.6E-19 2.3E-23 126.6 8.3 98 3-101 79-176 (179)
70 4djt_A GTP-binding nuclear pro 99.8 1.2E-18 4.1E-23 129.9 9.9 102 3-105 77-178 (218)
71 1r8s_A ADP-ribosylation factor 99.8 4.7E-19 1.6E-23 126.0 7.2 100 3-102 60-162 (164)
72 1f6b_A SAR1; gtpases, N-termin 99.8 1.2E-18 4.1E-23 128.7 9.7 96 2-99 84-196 (198)
73 3l0i_B RAS-related protein RAB 99.8 6.9E-20 2.4E-24 135.1 2.9 99 3-102 98-196 (199)
74 2j1l_A RHO-related GTP-binding 99.8 2E-18 6.9E-23 128.9 10.7 99 3-103 98-210 (214)
75 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.8E-18 6E-23 125.2 10.0 99 2-102 68-180 (186)
76 4bas_A ADP-ribosylation factor 99.8 1E-18 3.5E-23 128.0 8.7 103 2-104 78-191 (199)
77 2gco_A H9, RHO-related GTP-bin 99.8 5.3E-18 1.8E-22 125.2 12.6 97 3-101 89-199 (201)
78 1upt_A ARL1, ADP-ribosylation 99.8 1.3E-18 4.6E-23 124.3 8.5 101 2-102 66-169 (171)
79 1m2o_B GTP-binding protein SAR 99.8 2E-18 6.7E-23 126.7 9.3 96 2-99 82-189 (190)
80 2fv8_A H6, RHO-related GTP-bin 99.8 8.4E-18 2.9E-22 124.7 12.3 99 3-103 89-201 (207)
81 1vg8_A RAS-related protein RAB 99.8 7.4E-18 2.5E-22 124.3 11.8 101 3-104 73-177 (207)
82 2erx_A GTP-binding protein DI- 99.8 1.7E-18 5.8E-23 123.5 7.4 98 3-100 67-165 (172)
83 2b6h_A ADP-ribosylation factor 99.8 1E-18 3.4E-23 128.5 6.4 99 3-101 89-190 (192)
84 2x77_A ADP-ribosylation factor 99.8 2.7E-18 9.1E-23 125.2 8.5 100 3-102 82-184 (189)
85 4gzl_A RAS-related C3 botulinu 99.7 3.6E-18 1.2E-22 126.6 9.1 97 2-100 93-203 (204)
86 3c5h_A Glucocorticoid receptor 99.7 2.2E-18 7.5E-23 132.5 8.1 90 10-101 162-254 (255)
87 1zj6_A ADP-ribosylation factor 99.7 1.9E-18 6.6E-23 125.9 6.8 99 2-102 75-178 (187)
88 1fzq_A ADP-ribosylation factor 99.7 2.3E-18 7.8E-23 125.4 6.1 98 3-102 76-178 (181)
89 2gf0_A GTP-binding protein DI- 99.7 7.1E-18 2.4E-22 123.5 8.7 99 3-102 72-171 (199)
90 3llu_A RAS-related GTP-binding 99.7 1.1E-17 3.9E-22 123.0 9.0 93 5-100 90-195 (196)
91 2h17_A ADP-ribosylation factor 99.7 4.1E-18 1.4E-22 123.7 6.3 96 2-99 80-180 (181)
92 3gj0_A GTP-binding nuclear pro 99.7 1E-17 3.5E-22 125.3 8.7 97 3-103 80-176 (221)
93 1moz_A ARL1, ADP-ribosylation 99.7 9.6E-18 3.3E-22 121.3 8.1 100 2-103 77-181 (183)
94 1ksh_A ARF-like protein 2; sma 99.7 1.2E-17 4.1E-22 121.4 8.7 99 3-103 78-181 (186)
95 2h57_A ADP-ribosylation factor 99.7 4.3E-17 1.5E-21 119.0 11.5 99 2-102 82-187 (190)
96 1zd9_A ADP-ribosylation factor 99.7 4.1E-18 1.4E-22 124.5 5.8 98 3-102 83-185 (188)
97 1u0l_A Probable GTPase ENGC; p 99.7 2E-17 7E-22 130.2 8.5 92 2-99 76-170 (301)
98 2wkq_A NPH1-1, RAS-related C3 99.7 5.3E-17 1.8E-21 127.8 10.8 99 2-102 218-330 (332)
99 2zej_A Dardarin, leucine-rich 99.7 2.7E-17 9.2E-22 119.8 5.5 98 3-102 72-178 (184)
100 1cip_A Protein (guanine nucleo 99.7 2.8E-17 9.4E-22 132.1 5.9 102 2-103 208-345 (353)
101 3th5_A RAS-related C3 botulinu 99.5 2.8E-18 9.7E-23 126.8 0.0 96 3-100 94-203 (204)
102 3lvq_E ARF-GAP with SH3 domain 99.7 5.3E-17 1.8E-21 135.4 6.8 102 2-105 381-487 (497)
103 3o47_A ADP-ribosylation factor 99.7 5.3E-17 1.8E-21 129.3 5.5 99 2-102 224-327 (329)
104 2f9l_A RAB11B, member RAS onco 99.7 1.3E-15 4.3E-20 112.2 12.4 101 3-104 70-170 (199)
105 3r7w_B Gtpase2, GTP-binding pr 99.7 4E-17 1.4E-21 129.6 4.4 96 4-102 66-174 (331)
106 2xtz_A Guanine nucleotide-bind 99.6 1.3E-16 4.3E-21 128.3 5.9 102 2-103 198-346 (354)
107 1azs_C GS-alpha; complex (lyas 99.6 3.1E-16 1.1E-20 127.7 6.7 102 2-103 232-386 (402)
108 2qu8_A Putative nucleolar GTP- 99.6 2.1E-15 7E-20 113.5 10.4 96 6-103 104-206 (228)
109 2wji_A Ferrous iron transport 99.6 3.4E-16 1.2E-20 112.1 5.7 90 3-100 72-163 (165)
110 1zcb_A G alpha I/13; GTP-bindi 99.6 3.4E-16 1.2E-20 126.2 6.2 102 2-103 216-354 (362)
111 2fh5_B SR-beta, signal recogni 99.6 8.1E-16 2.8E-20 114.2 6.9 97 3-99 71-213 (214)
112 1oix_A RAS-related protein RAB 99.6 5.6E-15 1.9E-19 108.3 11.2 97 3-100 94-190 (191)
113 2yv5_A YJEQ protein; hydrolase 99.6 1.6E-15 5.4E-20 119.4 7.9 93 2-98 71-165 (302)
114 3r7w_A Gtpase1, GTP-binding pr 99.6 1.6E-15 5.5E-20 119.5 7.7 98 2-100 72-179 (307)
115 3ohm_A Guanine nucleotide-bind 99.6 7.9E-16 2.7E-20 122.4 5.2 102 2-103 182-319 (327)
116 2cxx_A Probable GTP-binding pr 99.6 1.6E-15 5.4E-20 110.0 4.0 98 3-103 71-185 (190)
117 2gj8_A MNME, tRNA modification 99.5 1.9E-15 6.6E-20 109.1 2.9 88 5-101 78-165 (172)
118 2dyk_A GTP-binding protein; GT 99.5 1.6E-14 5.4E-19 101.9 6.8 88 3-100 72-160 (161)
119 3iev_A GTP-binding protein ERA 99.5 3.8E-14 1.3E-18 111.7 8.2 96 3-102 85-182 (308)
120 4fid_A G protein alpha subunit 99.5 1.1E-14 3.6E-19 116.3 4.9 101 2-102 176-328 (340)
121 1svi_A GTP-binding protein YSX 99.5 3.4E-14 1.2E-18 103.6 6.8 93 4-101 96-194 (195)
122 2lkc_A Translation initiation 99.5 2.8E-13 9.5E-18 97.1 11.4 90 3-103 71-172 (178)
123 2wjg_A FEOB, ferrous iron tran 99.5 1.7E-14 5.9E-19 104.6 5.0 92 3-102 76-169 (188)
124 3pqc_A Probable GTP-binding pr 99.5 9.8E-14 3.3E-18 100.7 7.0 92 3-101 94-193 (195)
125 3a1s_A Iron(II) transport prot 99.4 1.9E-13 6.5E-18 105.2 7.4 91 3-101 74-166 (258)
126 3dpu_A RAB family protein; roc 99.4 1.1E-13 3.8E-18 116.5 6.1 96 3-103 114-209 (535)
127 2e87_A Hypothetical protein PH 99.4 7.3E-13 2.5E-17 106.3 10.3 93 6-102 242-336 (357)
128 3b1v_A Ferrous iron uptake tra 99.4 2E-13 7E-18 105.9 5.3 91 3-101 71-163 (272)
129 1lnz_A SPO0B-associated GTP-bi 99.4 3.5E-13 1.2E-17 107.8 6.3 94 5-102 228-330 (342)
130 4dcu_A GTP-binding protein ENG 99.4 1.1E-12 3.7E-17 108.5 8.6 96 5-105 272-372 (456)
131 3iby_A Ferrous iron transport 99.4 1.7E-13 5.8E-18 105.4 3.5 89 3-99 74-164 (256)
132 2hjg_A GTP-binding protein ENG 99.4 1.5E-12 5.1E-17 107.1 8.6 95 5-104 252-351 (436)
133 3gee_A MNME, tRNA modification 99.4 1.6E-12 5.5E-17 108.1 8.7 93 3-101 305-397 (476)
134 4dhe_A Probable GTP-binding pr 99.3 2.8E-12 9.5E-17 95.4 7.6 94 4-102 106-211 (223)
135 3i8s_A Ferrous iron transport 99.3 7.4E-13 2.5E-17 102.7 4.1 85 9-101 84-168 (274)
136 3qq5_A Small GTP-binding prote 99.3 4.3E-13 1.5E-17 110.1 2.8 91 4-103 107-197 (423)
137 1nrj_B SR-beta, signal recogni 99.3 3.8E-13 1.3E-17 99.9 2.0 86 3-88 71-170 (218)
138 1xzp_A Probable tRNA modificat 99.3 6E-12 2E-16 104.8 8.7 90 3-102 316-405 (482)
139 3k53_A Ferrous iron transport 99.3 5.6E-12 1.9E-16 97.3 6.1 94 4-104 73-168 (271)
140 3l82_B F-box only protein 4; T 99.2 1.4E-12 4.9E-17 97.2 2.0 99 1-102 116-223 (227)
141 3geh_A MNME, tRNA modification 99.2 2E-11 6.9E-16 101.1 7.8 89 3-102 296-384 (462)
142 1mky_A Probable GTP-binding pr 99.2 1.7E-11 5.8E-16 100.9 7.3 90 3-103 74-167 (439)
143 1wf3_A GTP-binding protein; GT 99.2 1.2E-11 4E-16 97.2 5.8 91 3-101 79-172 (301)
144 3h2y_A GTPase family protein; 99.2 4.6E-11 1.6E-15 96.4 7.6 90 3-100 62-158 (368)
145 3sjy_A Translation initiation 99.2 5E-11 1.7E-15 97.1 7.6 97 3-102 91-192 (403)
146 3cb4_D GTP-binding protein LEP 99.1 8.5E-11 2.9E-15 100.2 8.1 94 3-103 87-183 (599)
147 2qtf_A Protein HFLX, GTP-bindi 99.1 3.3E-10 1.1E-14 91.2 10.5 98 5-103 252-355 (364)
148 2ywe_A GTP-binding protein LEP 99.1 1.7E-10 6E-15 98.2 8.7 93 3-102 89-184 (600)
149 1mky_A Probable GTP-binding pr 99.1 1.5E-10 5E-15 95.2 7.8 94 5-103 258-356 (439)
150 1ega_A Protein (GTP-binding pr 99.1 1.4E-10 4.9E-15 91.0 7.2 92 4-101 82-174 (301)
151 1wb1_A Translation elongation 99.1 2.7E-10 9.2E-15 94.9 9.0 92 3-102 89-189 (482)
152 2hjg_A GTP-binding protein ENG 99.1 4.7E-11 1.6E-15 98.1 4.2 90 3-102 75-165 (436)
153 3l2o_B F-box only protein 4; s 99.1 4.2E-11 1.5E-15 93.3 3.4 99 1-102 201-308 (312)
154 1s0u_A EIF-2-gamma, translatio 99.0 7E-10 2.4E-14 90.4 8.9 90 5-101 99-197 (408)
155 3ec1_A YQEH GTPase; atnos1, at 99.0 3.5E-10 1.2E-14 91.2 5.1 90 3-100 64-160 (369)
156 1jny_A EF-1-alpha, elongation 98.9 1.7E-10 5.9E-15 94.8 2.1 91 3-94 100-205 (435)
157 1g7s_A Translation initiation 98.9 6.5E-09 2.2E-13 88.6 11.8 93 3-103 86-219 (594)
158 2elf_A Protein translation elo 98.9 1.3E-09 4.3E-14 88.0 6.8 92 4-102 77-180 (370)
159 1d2e_A Elongation factor TU (E 98.9 1.2E-09 4.1E-14 88.8 6.5 94 3-101 82-194 (397)
160 1kk1_A EIF2gamma; initiation o 98.9 2.5E-09 8.7E-14 87.1 8.4 90 5-101 101-199 (410)
161 3p26_A Elongation factor 1 alp 98.9 7.9E-10 2.7E-14 92.0 5.4 87 3-92 127-228 (483)
162 2aka_B Dynamin-1; fusion prote 98.9 1.9E-10 6.5E-15 89.3 1.5 95 3-101 154-252 (299)
163 3tr5_A RF-3, peptide chain rel 98.9 4.9E-09 1.7E-13 88.2 10.1 52 2-58 97-148 (528)
164 3izy_P Translation initiation 98.9 5.4E-10 1.9E-14 94.1 3.8 95 2-101 67-167 (537)
165 2qag_A Septin-2, protein NEDD5 98.9 7.3E-11 2.5E-15 94.9 -1.4 85 15-105 148-236 (361)
166 2c78_A Elongation factor TU-A; 98.9 8.2E-10 2.8E-14 89.9 4.6 81 3-88 91-180 (405)
167 1puj_A YLQF, conserved hypothe 98.9 2.9E-09 1E-13 82.8 6.4 89 3-102 16-106 (282)
168 2xtp_A GTPase IMAP family memb 98.9 1.8E-09 6E-14 82.5 5.1 95 6-103 101-209 (260)
169 1zun_B Sulfate adenylate trans 98.9 1.3E-09 4.5E-14 89.5 4.4 88 3-95 120-217 (434)
170 1udx_A The GTP-binding protein 98.8 7.7E-09 2.6E-13 84.6 8.4 95 8-105 233-328 (416)
171 3j2k_7 ERF3, eukaryotic polype 98.8 6.7E-09 2.3E-13 85.5 7.5 88 3-94 111-217 (439)
172 2wsm_A Hydrogenase expression/ 98.8 3E-09 1E-13 78.9 4.4 85 9-102 128-214 (221)
173 1r5b_A Eukaryotic peptide chai 98.8 6.2E-10 2.1E-14 92.3 0.6 91 3-94 137-244 (467)
174 4dcu_A GTP-binding protein ENG 98.8 2.6E-09 8.8E-14 88.2 4.1 89 3-101 95-184 (456)
175 1zo1_I IF2, translation initia 98.8 1.8E-09 6E-14 90.3 2.7 89 3-99 67-164 (501)
176 3avx_A Elongation factor TS, e 98.8 7.4E-09 2.5E-13 93.4 6.6 93 3-100 375-484 (1289)
177 2j69_A Bacterial dynamin-like 98.8 7.8E-09 2.7E-13 89.5 6.4 96 3-102 193-325 (695)
178 3izq_1 HBS1P, elongation facto 98.7 4.4E-09 1.5E-13 89.9 3.5 88 3-93 261-363 (611)
179 2ged_A SR-beta, signal recogni 98.7 8.5E-09 2.9E-13 74.6 4.5 58 4-61 108-173 (193)
180 3lxx_A GTPase IMAP family memb 98.7 5.2E-08 1.8E-12 73.4 8.9 95 5-102 107-214 (239)
181 1f60_A Elongation factor EEF1A 98.7 7.2E-09 2.5E-13 85.7 4.0 86 3-92 101-202 (458)
182 1pui_A ENGB, probable GTP-bind 98.7 5.1E-08 1.7E-12 71.5 7.5 86 9-101 107-198 (210)
183 2dy1_A Elongation factor G; tr 98.7 3.6E-08 1.2E-12 85.0 7.4 50 3-57 90-139 (665)
184 2qag_C Septin-7; cell cycle, c 98.7 6.4E-09 2.2E-13 85.1 2.6 93 4-101 130-226 (418)
185 2hf9_A Probable hydrogenase ni 98.6 1.3E-09 4.6E-14 81.1 -2.1 58 45-102 165-224 (226)
186 3t34_A Dynamin-related protein 98.6 8E-09 2.7E-13 82.7 1.5 96 2-100 164-259 (360)
187 3p32_A Probable GTPase RV1496/ 98.6 1.6E-08 5.6E-13 80.9 2.2 85 8-102 190-284 (355)
188 2qnr_A Septin-2, protein NEDD5 98.5 5E-08 1.7E-12 76.4 3.6 61 43-104 154-216 (301)
189 3lxw_A GTPase IMAP family memb 98.5 3.7E-07 1.2E-11 69.4 8.2 95 8-103 103-209 (247)
190 1jwy_B Dynamin A GTPase domain 98.5 1.2E-07 4E-12 74.1 5.2 96 3-102 160-262 (315)
191 3t5d_A Septin-7; GTP-binding p 98.5 4E-08 1.4E-12 75.7 2.5 86 11-101 116-203 (274)
192 1yrb_A ATP(GTP)binding protein 98.5 2E-07 6.9E-12 70.7 5.9 92 7-102 135-257 (262)
193 3cnl_A YLQF, putative uncharac 98.5 7.2E-08 2.5E-12 74.2 3.3 84 3-98 14-97 (262)
194 3mca_A HBS1, elongation factor 98.4 4.9E-08 1.7E-12 83.1 1.4 84 3-90 271-371 (592)
195 1t9h_A YLOQ, probable GTPase E 98.4 1.4E-07 4.7E-12 74.3 3.6 87 5-95 81-170 (307)
196 1dar_A EF-G, elongation factor 98.4 7.6E-07 2.6E-11 77.1 8.0 51 3-58 93-143 (691)
197 2h5e_A Peptide chain release f 98.3 1.6E-06 5.5E-11 72.9 8.8 51 3-58 98-148 (529)
198 2p67_A LAO/AO transport system 98.3 6.5E-07 2.2E-11 71.2 5.5 86 7-101 166-260 (341)
199 1wxq_A GTP-binding protein; st 98.2 2.6E-07 9E-12 75.1 1.6 49 44-94 214-262 (397)
200 2x2e_A Dynamin-1; nitration, h 98.2 1.1E-07 3.6E-12 76.0 -1.3 93 3-99 159-255 (353)
201 2rcn_A Probable GTPase ENGC; Y 98.2 5.3E-06 1.8E-10 66.5 8.5 84 7-95 127-212 (358)
202 2rdo_7 EF-G, elongation factor 98.2 6.1E-06 2.1E-10 71.6 9.5 51 3-58 98-148 (704)
203 2xex_A Elongation factor G; GT 98.2 5E-06 1.7E-10 72.0 8.9 51 3-58 91-141 (693)
204 2www_A Methylmalonic aciduria 98.1 4E-06 1.4E-10 66.9 6.8 86 7-102 184-279 (349)
205 2qm8_A GTPase/ATPase; G protei 97.9 1.8E-05 6.3E-10 62.8 6.7 85 8-101 166-260 (337)
206 3zvr_A Dynamin-1; hydrolase, D 97.9 2.7E-06 9.2E-11 74.2 0.9 92 4-99 180-275 (772)
207 2dby_A GTP-binding protein; GD 97.7 4E-05 1.4E-09 61.6 5.9 54 44-97 201-257 (368)
208 1jal_A YCHF protein; nucleotid 97.7 0.00025 8.6E-09 56.9 9.3 43 43-85 198-240 (363)
209 2qpt_A EH domain-containing pr 97.6 1.3E-05 4.5E-10 67.6 1.6 55 3-61 181-235 (550)
210 1h65_A Chloroplast outer envel 97.6 8.7E-05 3E-09 56.7 5.2 53 8-61 117-171 (270)
211 3vqt_A RF-3, peptide chain rel 97.4 0.00052 1.8E-08 57.9 8.8 48 5-57 118-165 (548)
212 3def_A T7I23.11 protein; chlor 97.4 9.5E-05 3.3E-09 56.3 3.6 50 10-60 116-167 (262)
213 1n0u_A EF-2, elongation factor 97.3 0.00013 4.4E-09 64.5 3.6 50 3-57 114-163 (842)
214 3j25_A Tetracycline resistance 96.8 0.00077 2.6E-08 57.8 3.9 48 5-57 85-132 (638)
215 4fn5_A EF-G 1, elongation fact 96.3 0.019 6.4E-07 49.8 9.3 47 6-57 104-150 (709)
216 4a9a_A Ribosome-interacting GT 93.1 0.31 1.1E-05 39.0 7.4 50 6-57 145-195 (376)
217 2j37_W Signal recognition part 91.9 0.13 4.4E-06 42.9 3.8 78 10-99 213-310 (504)
218 3end_A Light-independent proto 90.7 2.6 8.8E-05 32.0 10.0 68 5-80 174-242 (307)
219 3dm5_A SRP54, signal recogniti 84.6 1.9 6.6E-05 35.2 6.0 63 10-83 212-274 (443)
220 3cwq_A Para family chromosome 83.3 5.2 0.00018 28.6 7.4 69 5-79 85-153 (209)
221 4dzz_A Plasmid partitioning pr 83.2 1.8 6.3E-05 30.4 4.9 70 5-79 92-162 (206)
222 4a9a_A Ribosome-interacting GT 78.5 5.8 0.0002 31.6 6.7 52 43-101 248-299 (376)
223 3ea0_A ATPase, para family; al 78.1 16 0.00056 26.1 9.4 71 4-81 134-204 (245)
224 3kl4_A SRP54, signal recogniti 76.3 4.5 0.00015 32.9 5.5 67 10-89 211-277 (433)
225 2qag_B Septin-6, protein NEDD5 74.2 2 6.8E-05 35.0 2.9 65 13-83 151-217 (427)
226 2zay_A Response regulator rece 71.8 17 0.00059 23.4 7.4 75 11-102 53-128 (147)
227 1ni3_A YCHF GTPase, YCHF GTP-b 71.7 7.5 0.00026 31.1 5.7 42 44-85 224-269 (392)
228 1j8m_F SRP54, signal recogniti 71.0 6.4 0.00022 30.1 5.0 71 8-92 210-281 (297)
229 2v3c_C SRP54, signal recogniti 67.9 11 0.00038 30.5 6.0 60 10-81 210-271 (432)
230 1cp2_A CP2, nitrogenase iron p 66.9 34 0.0012 24.9 8.5 66 9-79 139-205 (269)
231 2ph1_A Nucleotide-binding prot 66.3 15 0.0005 27.1 6.1 66 10-80 152-224 (262)
232 1wcv_1 SOJ, segregation protei 65.0 14 0.00049 27.0 5.8 51 6-57 129-182 (257)
233 1g3q_A MIND ATPase, cell divis 64.3 35 0.0012 24.1 8.3 67 5-79 128-194 (237)
234 1k68_A Phytochrome response re 63.2 25 0.00086 22.0 7.6 77 10-103 55-132 (140)
235 1tq4_A IIGP1, interferon-induc 62.1 8.4 0.00029 31.1 4.2 59 44-102 175-253 (413)
236 2ale_A SNU13, NHP2/L7AE family 61.7 12 0.0004 25.3 4.3 76 11-103 49-124 (134)
237 2ohf_A Protein OLA1, GTP-bindi 60.6 2.4 8.2E-05 34.1 0.7 23 4-26 110-132 (396)
238 3sop_A Neuronal-specific septi 58.8 9 0.00031 28.8 3.7 45 9-59 110-155 (270)
239 3k9g_A PF-32 protein; ssgcid, 58.4 22 0.00076 25.9 5.8 48 5-55 161-208 (267)
240 3q9l_A Septum site-determining 56.7 14 0.00046 26.8 4.3 51 5-56 130-185 (260)
241 2yvt_A Hypothetical protein AQ 56.4 17 0.00057 26.3 4.8 17 9-25 31-47 (260)
242 1hyq_A MIND, cell division inh 53.4 60 0.0021 23.4 8.4 66 6-79 128-193 (263)
243 3u7r_A NADPH-dependent FMN red 51.8 13 0.00046 26.4 3.5 47 7-53 64-113 (190)
244 2afh_E Nitrogenase iron protei 51.3 70 0.0024 23.5 8.2 66 9-79 142-208 (289)
245 3kjh_A CO dehydrogenase/acetyl 50.8 35 0.0012 24.2 5.8 47 5-55 148-194 (254)
246 1k66_A Phytochrome response re 49.9 46 0.0016 21.0 7.3 77 10-103 62-139 (149)
247 3bfv_A CAPA1, CAPB2, membrane 47.7 24 0.00082 26.3 4.5 45 8-57 212-257 (271)
248 3grc_A Sensor protein, kinase; 47.0 35 0.0012 21.5 4.8 78 10-103 50-128 (140)
249 3do6_A Formate--tetrahydrofola 43.9 67 0.0023 26.7 6.7 69 26-100 346-416 (543)
250 3i42_A Response regulator rece 43.6 49 0.0017 20.4 5.0 42 11-56 48-89 (127)
251 3uc9_A Increased recombination 42.7 9.2 0.00031 28.5 1.4 39 12-55 104-142 (233)
252 1rtt_A Conserved hypothetical 41.8 12 0.00042 26.1 1.9 46 8-53 70-117 (193)
253 4hs4_A Chromate reductase; tri 41.5 23 0.0008 25.1 3.4 46 8-53 71-118 (199)
254 3fvw_A Putative NAD(P)H-depend 40.2 20 0.00068 25.2 2.8 70 7-78 64-142 (192)
255 2ark_A Flavodoxin; FMN, struct 40.0 53 0.0018 22.6 5.1 48 8-55 50-99 (188)
256 3kht_A Response regulator; PSI 39.5 71 0.0024 20.2 8.9 58 32-102 69-128 (144)
257 2j48_A Two-component sensor ki 38.2 53 0.0018 19.5 4.4 41 11-55 46-86 (119)
258 3e70_C DPA, signal recognition 38.0 42 0.0014 25.9 4.6 69 11-92 242-310 (328)
259 3svl_A Protein YIEF; E. coli C 37.6 35 0.0012 24.0 3.8 45 8-52 70-116 (193)
260 3cg4_A Response regulator rece 37.6 61 0.0021 20.4 4.8 42 11-56 52-93 (142)
261 3gt7_A Sensor protein; structu 37.4 82 0.0028 20.3 10.6 76 10-102 51-127 (154)
262 3k1y_A Oxidoreductase; structu 36.6 23 0.0008 25.1 2.7 45 7-52 82-126 (191)
263 2xzm_U Ribosomal protein L7AE 36.2 22 0.00076 23.6 2.4 16 66-81 58-73 (126)
264 3pzx_A Formate--tetrahydrofola 35.4 35 0.0012 28.6 3.8 70 27-102 361-430 (557)
265 1bif_A 6-phosphofructo-2-kinas 35.1 40 0.0014 27.2 4.2 34 5-39 115-148 (469)
266 2vzf_A NADH-dependent FMN redu 34.4 17 0.00058 25.5 1.6 70 8-79 67-136 (197)
267 3heb_A Response regulator rece 34.3 91 0.0031 19.9 7.8 73 10-99 59-132 (152)
268 3lcm_A SMU.1420, putative oxid 33.9 32 0.0011 24.2 3.1 46 8-53 71-128 (196)
269 3cf4_G Acetyl-COA decarboxylas 33.4 63 0.0022 22.1 4.5 34 44-81 35-68 (170)
270 3ha2_A NADPH-quinone reductase 33.0 51 0.0017 23.0 4.0 47 7-53 48-101 (177)
271 1d4a_A DT-diaphorase, quinone 32.6 39 0.0013 25.2 3.5 47 8-54 91-149 (273)
272 2q62_A ARSH; alpha/beta, flavo 32.1 23 0.00078 26.3 2.1 69 7-77 95-167 (247)
273 2fz5_A Flavodoxin; alpha/beta 32.0 34 0.0011 21.9 2.8 67 8-79 44-112 (137)
274 1t5b_A Acyl carrier protein ph 31.9 29 0.001 23.9 2.6 73 7-79 83-169 (201)
275 1t0i_A YLR011WP; FMN binding p 31.7 36 0.0012 23.4 3.0 44 7-52 81-124 (191)
276 3fwy_A Light-independent proto 31.4 1.7E+02 0.0058 22.2 9.8 65 8-80 184-249 (314)
277 1rli_A Trp repressor binding p 31.4 32 0.0011 23.4 2.7 31 7-37 68-98 (184)
278 3nhm_A Response regulator; pro 31.0 95 0.0032 19.1 7.1 76 10-103 47-123 (133)
279 2qvg_A Two component response 31.0 51 0.0017 20.8 3.5 70 11-97 60-130 (143)
280 2l82_A Designed protein OR32; 30.7 1.1E+02 0.0038 19.9 6.6 76 7-100 74-149 (162)
281 5nul_A Flavodoxin; electron tr 30.3 51 0.0018 21.2 3.5 44 8-53 43-88 (138)
282 3v7e_A Ribosome-associated pro 30.3 22 0.00074 21.6 1.4 13 44-56 53-65 (82)
283 2ohf_A Protein OLA1, GTP-bindi 29.7 46 0.0016 26.6 3.6 44 43-86 221-268 (396)
284 3pg5_A Uncharacterized protein 29.3 1.8E+02 0.006 22.4 7.0 36 72-107 308-352 (361)
285 3jyw_G 60S ribosomal protein L 28.1 31 0.001 22.5 1.9 40 10-56 41-80 (113)
286 1sqs_A Conserved hypothetical 28.1 44 0.0015 24.1 3.1 70 8-79 77-149 (242)
287 2aif_A Ribosomal protein L7A; 28.0 61 0.0021 21.6 3.5 48 43-100 83-130 (135)
288 3f2v_A General stress protein 28.0 47 0.0016 23.5 3.1 47 7-53 55-109 (192)
289 3ez9_A Para; DNA binding, wing 27.8 1.1E+02 0.0039 23.8 5.6 49 6-55 265-321 (403)
290 1zpw_X Hypothetical protein TT 27.7 80 0.0027 19.3 3.8 15 13-27 5-19 (90)
291 3exc_X Uncharacterized protein 27.5 86 0.0029 19.4 3.9 13 12-24 4-16 (91)
292 1byi_A Dethiobiotin synthase; 27.2 1.6E+02 0.0054 20.4 8.0 59 14-79 141-200 (224)
293 3n53_A Response regulator rece 27.0 59 0.002 20.4 3.3 75 11-102 47-122 (140)
294 3j21_Z 50S ribosomal protein L 26.4 1.1E+02 0.0039 18.8 4.4 15 43-57 56-71 (99)
295 3tem_A Ribosyldihydronicotinam 26.3 57 0.0019 23.6 3.4 47 8-54 90-148 (228)
296 3t6k_A Response regulator rece 26.0 1.2E+02 0.0043 18.9 9.3 76 10-102 48-124 (136)
297 2amj_A Modulator of drug activ 25.6 79 0.0027 22.3 4.0 30 8-37 68-97 (204)
298 3gfs_A FMN-dependent NADPH-azo 25.2 14 0.00049 25.3 -0.1 71 8-80 61-131 (174)
299 3ezx_A MMCP 1, monomethylamine 25.2 99 0.0034 22.2 4.5 43 10-52 143-185 (215)
300 2ffh_A Protein (FFH); SRP54, s 25.1 1.2E+02 0.0042 24.3 5.4 62 10-82 210-271 (425)
301 1ko7_A HPR kinase/phosphatase; 25.0 64 0.0022 24.9 3.5 50 43-99 79-128 (314)
302 3la6_A Tyrosine-protein kinase 24.7 1.1E+02 0.0038 22.8 4.8 48 6-57 220-267 (286)
303 1uf3_A Hypothetical protein TT 24.6 1.1E+02 0.0037 21.1 4.6 43 10-56 32-75 (228)
304 2jba_A Phosphate regulon trans 24.5 96 0.0033 18.8 3.9 41 11-55 47-87 (127)
305 3cio_A ETK, tyrosine-protein k 24.2 60 0.0021 24.4 3.3 45 8-57 234-279 (299)
306 3c3m_A Response regulator rece 24.0 1.4E+02 0.0047 18.6 4.8 40 11-54 48-87 (138)
307 1i3c_A Response regulator RCP1 23.6 1.5E+02 0.005 18.8 8.3 73 11-100 62-135 (149)
308 3izc_H 60S ribosomal protein R 23.6 44 0.0015 25.1 2.3 40 10-56 147-186 (256)
309 1wls_A L-asparaginase; structu 23.6 94 0.0032 24.0 4.3 44 7-56 70-113 (328)
310 2ivy_A Hypothetical protein SS 23.6 1E+02 0.0035 19.4 3.8 12 12-23 3-14 (101)
311 1ls1_A Signal recognition part 23.5 1.4E+02 0.0048 22.4 5.2 69 10-91 210-278 (295)
312 2a5l_A Trp repressor binding p 23.5 1.8E+02 0.006 19.7 6.6 73 8-80 69-144 (200)
313 3cnb_A DNA-binding response re 22.7 1.4E+02 0.0049 18.4 9.8 74 11-101 55-129 (143)
314 3to5_A CHEY homolog; alpha(5)b 22.6 1.7E+02 0.0057 19.1 6.2 71 11-98 58-129 (134)
315 2xj4_A MIPZ; replication, cell 22.5 38 0.0013 25.1 1.8 53 4-57 119-191 (286)
316 2jnb_A NHP2-like protein 1; sp 22.4 16 0.00054 25.0 -0.4 50 43-102 92-141 (144)
317 3gl9_A Response regulator; bet 22.2 1.4E+02 0.0048 18.1 9.1 71 11-98 47-118 (122)
318 2zki_A 199AA long hypothetical 22.1 1.9E+02 0.0065 19.6 6.0 73 8-80 68-143 (199)
319 3s2y_A Chromate reductase; ura 27.4 19 0.00065 25.6 0.0 46 7-52 70-117 (199)
320 2him_A L-asparaginase 1; hydro 21.7 91 0.0031 24.5 3.9 44 7-56 98-141 (358)
321 4ici_A Putative flavoprotein; 21.6 1.1E+02 0.0038 20.8 4.0 44 7-54 84-127 (171)
322 1ydg_A Trp repressor binding p 21.2 2E+02 0.0069 19.8 5.5 73 8-80 76-151 (211)
323 1eiw_A Hypothetical protein MT 21.0 1.2E+02 0.0042 19.4 3.8 39 8-51 36-74 (111)
324 2khz_A C-MYC-responsive protei 20.7 1.1E+02 0.0037 20.9 3.8 43 5-55 72-114 (165)
325 2xmo_A LMO2642 protein; phosph 20.5 1.4E+02 0.0047 23.4 4.9 41 9-53 91-135 (443)
326 4pga_A Glutaminase-asparaginas 20.2 1.1E+02 0.0038 23.8 4.1 40 9-55 89-128 (337)
327 3hdg_A Uncharacterized protein 20.1 1.6E+02 0.0056 18.1 5.5 73 11-102 52-125 (137)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=3.8e-25 Score=166.89 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=91.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+++.||+++|++|+|||+++++||+++..|+..+.... .+++|+||||||+||.+.++|+.+++..+++.+++.|+||
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~ 155 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 155 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEE
Confidence 467899999999999999999999999999999987653 4689999999999999889999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
||++|.||+++|+.|++.+...
T Consensus 156 SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC---
T ss_pred eCCCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999988653
No 2
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.6e-22 Score=149.97 Aligned_cols=102 Identities=41% Similarity=0.640 Sum_probs=89.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||+.+|++|+|||++++.||+.+..|+..+.......++|+||||||+||.+.+.+..+++..++..++++|++||
T Consensus 104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~S 183 (211)
T 2g3y_A 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETS 183 (211)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEe
Confidence 45678999999999999999999999999998886532335799999999999987777888888889999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|++.+....
T Consensus 184 Ak~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 184 AAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887543
No 3
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=142.33 Aligned_cols=101 Identities=39% Similarity=0.537 Sum_probs=90.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||+++|++|+|||++++.+|+.+..|+.++.......++|+|+||||+|+.+.+.++.+++..++..++++|++||
T Consensus 89 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 168 (195)
T 3cbq_A 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 168 (195)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence 45678999999999999999999999999999987654445799999999999988788888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.||+++|+.|++.+...
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988753
No 4
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.85 E-value=6.4e-21 Score=140.49 Aligned_cols=102 Identities=39% Similarity=0.559 Sum_probs=89.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||+.+|++|+|||++++.||+.+..|+..+.......++|+|+||||+|+...+.+..+++..++..++++|++||
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~S 152 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETS 152 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEec
Confidence 56788999999999999999999999999988886543345789999999999987677777888888888999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|++.+....
T Consensus 153 A~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 153 AAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999987544
No 5
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=135.75 Aligned_cols=102 Identities=39% Similarity=0.632 Sum_probs=88.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++.+|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++|++||
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETS 149 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECB
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEe
Confidence 45678999999999999999999999999999887653345799999999999988788888888889999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|++.+....
T Consensus 150 a~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987654
No 6
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.85 E-value=8.2e-21 Score=135.41 Aligned_cols=101 Identities=39% Similarity=0.596 Sum_probs=83.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETS 144 (166)
T ss_dssp --------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEec
Confidence 56789999999999999999999999999999987654456899999999999988888888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.|++++|++|++.+...
T Consensus 145 a~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp GGGTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 7
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=8.6e-21 Score=135.67 Aligned_cols=100 Identities=39% Similarity=0.532 Sum_probs=90.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 147 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEec
Confidence 45667889999999999999999999999999997765445899999999999987788888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|++.+..
T Consensus 148 a~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 8
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=1.6e-20 Score=135.96 Aligned_cols=102 Identities=25% Similarity=0.328 Sum_probs=90.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEe
Confidence 56789999999999999999999999999999987665556899999999999988888889999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.|++++|+.|++.+....
T Consensus 150 a~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 150 AKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTSHHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999987643
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=2.8e-20 Score=134.90 Aligned_cols=101 Identities=26% Similarity=0.409 Sum_probs=85.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..++++|++||
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 5678999999999999999999999999999998765 235789999999999988778888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|.+|++.+....
T Consensus 152 a~~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp C---CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999988654
No 10
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=2.2e-20 Score=136.65 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=87.4
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC--CccccChhHHHHHHHhcC-CeEEEEec
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV--RCRVVTDEDGKDMATAYD-CKFIETSV 83 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~--~~~~v~~~~~~~~~~~~~-~~~~e~SA 83 (167)
||+++|++|+|||++++.+|+.+..|+.++.......++|+++||||+|+. ..+.+..+++..++..++ +.|++|||
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence 788999999999999999999999999999765444678999999999994 456788889999999987 89999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy15004 84 GINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~~~ 104 (167)
++|.||+++|++|++.+....
T Consensus 162 ~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=137.48 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=91.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..+++ +|++|
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIET 172 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 46789999999999999999999999999999987653 35799999999999987777888889999999999 99999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||++|.||+++|++|++.+.....
T Consensus 173 SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 173 SAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999986543
No 12
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=2e-20 Score=135.64 Aligned_cols=100 Identities=39% Similarity=0.500 Sum_probs=91.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 82 MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp SHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEec
Confidence 46778999999999999999999999999999987654556899999999999988888889999999999999999999
Q ss_pred cC-CCCCHHHHHHHHHHHHHh
Q psy15004 83 VG-INHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~-~~~~v~~lf~~l~~~i~~ 102 (167)
|+ +|.||+++|+.|++.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 99 999999999999998864
No 13
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3e-20 Score=136.13 Aligned_cols=102 Identities=28% Similarity=0.374 Sum_probs=92.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEAS 166 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEE
Confidence 5678999999999999999999999999999999765 345899999999999988788888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|++|.||+++|+.|++.+.++..
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 167 AKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987543
No 14
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.83 E-value=7.7e-20 Score=133.79 Aligned_cols=103 Identities=28% Similarity=0.413 Sum_probs=92.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++|+++
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 356789999999999999999999999999999987653 3578999999999998888888889999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 82 SVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
||++|.||+++|++|++.+.....
T Consensus 159 Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987654
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.6e-20 Score=136.58 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=91.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|++||
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 169 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETS 169 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEe
Confidence 56789999999999999999999999999999987653 35789999999999987777888888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|++|.||+++|++|++.+.....
T Consensus 170 a~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987654
No 16
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=137.22 Aligned_cols=103 Identities=28% Similarity=0.397 Sum_probs=89.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 167 (201)
T 3oes_A 88 LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESS 167 (201)
T ss_dssp CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEe
Confidence 56789999999999999999999999999999997654456789999999999988888888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|++|.||+++|+.|++.+.....
T Consensus 168 a~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999987543
No 17
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.83 E-value=7e-20 Score=134.15 Aligned_cols=101 Identities=25% Similarity=0.359 Sum_probs=91.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 164 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETS 164 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 46789999999999999999999999999999987652 35789999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|++.+.++.
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 18
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.83 E-value=1.1e-19 Score=132.79 Aligned_cols=102 Identities=30% Similarity=0.419 Sum_probs=91.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..++++++++
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 35678999999999999999999999999999998765 24578999999999998777777888899999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||++|.|++++|++|++.+.++.
T Consensus 165 Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 165 SAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987654
No 19
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=4.1e-20 Score=133.21 Aligned_cols=104 Identities=22% Similarity=0.341 Sum_probs=92.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++...+++|+++|
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 152 (181)
T 2fn4_A 73 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEAS 152 (181)
T ss_dssp CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred HHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 46678999999999999999999999999999885544456789999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
|++|.|++++|++|.+.+......
T Consensus 153 a~~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999875543
No 20
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.82 E-value=5.2e-20 Score=137.73 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=89.4
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHH-HHHHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHV-AEQCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~-~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~ 68 (167)
.++..||+++|++|+|||++++.+|+. +..|+..+... ..++|++|||||+|+.+. +.+..+++.
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 357789999999999999999999999 68999999765 358999999999999753 668889999
Q ss_pred HHHHhcCC-eEEEEecCCCCC-HHHHHHHHHHHHHhhhC
Q psy15004 69 DMATAYDC-KFIETSVGINHN-VDELLVGILTQIRLKLD 105 (167)
Q Consensus 69 ~~~~~~~~-~~~e~SA~~~~~-v~~lf~~l~~~i~~~~~ 105 (167)
.++..+++ +|++|||++|.| |+++|+.|++.+.....
T Consensus 168 ~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999999 999999999998 99999999999886543
No 21
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=134.10 Aligned_cols=104 Identities=25% Similarity=0.266 Sum_probs=92.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|++||
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 168 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETS 168 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 46778999999999999999999999999999987653 35799999999999987777888888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhCCC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLDNP 107 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~~~ 107 (167)
|++|.||+++|++|++.+.......
T Consensus 169 A~~g~gi~~l~~~l~~~i~~~~~~~ 193 (200)
T 2o52_A 169 ALTGENVEEAFLKCARTILNKIDSG 193 (200)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998765443
No 22
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.82 E-value=9.7e-20 Score=131.48 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=84.4
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCC--CccccChhHHHHHHHhc-CCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLV--RCRVVTDEDGKDMATAY-DCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~ 79 (167)
..||+++|++|+|||++++.+|+.+..|+..+..... ..++|+++||||+|+. ..+.+..+++..++..+ +++|+
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence 4688999999999999999999999998766644322 3578999999999994 45677888888898876 68999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+|||++|.||+++|+.|++.+...
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 23
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5.5e-20 Score=135.22 Aligned_cols=103 Identities=27% Similarity=0.406 Sum_probs=92.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++|+++
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYEC 169 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEEC
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEE
Confidence 35678999999999999999999999999999988765445689999999999998777788889999999999999999
Q ss_pred ecCCCC-CHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINH-NVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~-~v~~lf~~l~~~i~~~~ 104 (167)
||++|. ||+++|++|++.+.+..
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHHHhhc
Confidence 999999 99999999999987643
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.82 E-value=6e-20 Score=130.51 Aligned_cols=100 Identities=25% Similarity=0.428 Sum_probs=90.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++..++++++++|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETS 147 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 56788999999999999999999999999999987765455899999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|++.+.+
T Consensus 148 a~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 148 AKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.82 E-value=1.3e-19 Score=131.57 Aligned_cols=103 Identities=24% Similarity=0.286 Sum_probs=91.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|+++|
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 153 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEec
Confidence 46789999999999999999999999999999887653 35789999999999987777888888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
|++|.|++++|++|++.+......
T Consensus 154 a~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999876543
No 26
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=3.2e-19 Score=131.95 Aligned_cols=101 Identities=32% Similarity=0.398 Sum_probs=91.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 56789999999999999999999999999999987653 35789999999999988777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|.+|++.+....
T Consensus 152 a~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=2e-19 Score=129.74 Aligned_cols=100 Identities=29% Similarity=0.452 Sum_probs=87.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++|
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 56789999999999999999999999999999987653 25789999999999988777888888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.|++++|++|.+.+...
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 28
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.81 E-value=8.7e-20 Score=129.87 Aligned_cols=100 Identities=28% Similarity=0.464 Sum_probs=88.8
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc-CCeEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY-DCKFIE 80 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e 80 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..+ +++|++
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence 3567889999999999999999999999999998876544568999999999999877778888889999887 789999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+||++|.|++++|++|.+.+.
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHHT
T ss_pred ecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998763
No 29
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=132.58 Aligned_cols=101 Identities=25% Similarity=0.433 Sum_probs=91.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 45688999999999999999999999999999997765456899999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.||+++|++|++.+...
T Consensus 158 a~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999998764
No 30
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.81 E-value=1.5e-19 Score=130.06 Aligned_cols=99 Identities=23% Similarity=0.312 Sum_probs=88.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEAS 158 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 56788999999999999999999999999999987653 35789999999999987777788889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.||+++|++|++.+.+
T Consensus 159 a~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=128.42 Aligned_cols=100 Identities=28% Similarity=0.327 Sum_probs=90.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+... ..++|+++|+||+|+.+.+.+..+++..++..++++++++|
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 5678999999999999999999999999999998765 35799999999999988777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.|++++|++|.+.+....
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 152 AKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.81 E-value=1.5e-19 Score=131.50 Aligned_cols=102 Identities=22% Similarity=0.372 Sum_probs=91.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..|++++|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++|
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 46788999999999999999999999999999987764446899999999999987777778888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|.+.+....
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 33
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=1.4e-19 Score=129.32 Aligned_cols=99 Identities=24% Similarity=0.309 Sum_probs=87.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 46778999999999999999999999999998886542 24789999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|++.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 150 AKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998763
No 34
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=2.2e-19 Score=131.64 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=88.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc--cccChhHHHHHHHhcCCe-
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC--RVVTDEDGKDMATAYDCK- 77 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~~~- 77 (167)
.++..|++++|++|+|||++++.+|+.+ ..|+..+... ..++|+++||||+|+.+. +.+..+++..++..+++.
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 3567899999999999999999999997 7798888654 357999999999999753 667888999999999997
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
|+++||++|.||+++|++|++.+...
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 35
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=134.86 Aligned_cols=98 Identities=27% Similarity=0.371 Sum_probs=87.5
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
..||+++|++|+|||++++.+|+.+..|+.++..... ..++|+++||||+|+.+.+.++.+++..++..++++|++||
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 4689999999999999999999999999999865421 24789999999999987788888899999999999999999
Q ss_pred c-CCCCCHHHHHHHHHHHHHh
Q psy15004 83 V-GINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A-~~~~~v~~lf~~l~~~i~~ 102 (167)
| ++|.||+++|+.|++.+.+
T Consensus 166 a~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHHHC
T ss_pred ecCccccHHHHHHHHHHHHhh
Confidence 9 8999999999999998753
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.81 E-value=1.6e-19 Score=130.67 Aligned_cols=101 Identities=25% Similarity=0.433 Sum_probs=91.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 161 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 46788999999999999999999999999999987765455899999999999987777788889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|+++.||+++|++|++.+...
T Consensus 162 a~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 37
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.81 E-value=3.5e-19 Score=131.33 Aligned_cols=101 Identities=29% Similarity=0.400 Sum_probs=91.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..++++++++|
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 5678999999999999999999999999999998765 245789999999999988778888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|++.+..+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999888754
No 38
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-19 Score=135.49 Aligned_cols=103 Identities=29% Similarity=0.352 Sum_probs=88.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 156 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETS 156 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 56789999999999999999999999999999987653 45789999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhCC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLDN 106 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~~ 106 (167)
|++|.||+++|++|++.+......
T Consensus 157 a~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999875543
No 39
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.81 E-value=1.8e-19 Score=128.44 Aligned_cols=97 Identities=25% Similarity=0.351 Sum_probs=87.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|+++|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 46778999999999999999999999999999987653 45899999999999987777777888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.|++++|++|++.+
T Consensus 150 a~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TTTCTTHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 40
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.81 E-value=2.3e-19 Score=129.54 Aligned_cols=99 Identities=29% Similarity=0.355 Sum_probs=88.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEE
Confidence 56778999999999999999999999999999987653 35789999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|++.+..
T Consensus 156 a~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999887644
No 41
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=130.17 Aligned_cols=102 Identities=27% Similarity=0.376 Sum_probs=90.7
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++...+++|+++
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLET 167 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 35678899999999999999999999999999998654 23578999999999998777777888899999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||++|.||+++|++|++.+..+.
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 168 SALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 42
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.80 E-value=2.5e-19 Score=133.55 Aligned_cols=102 Identities=22% Similarity=0.389 Sum_probs=90.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..++++|++||
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 46789999999999999999999999999998885543336799999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.||+++|++|++.+....
T Consensus 180 a~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 180 AATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887653
No 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.80 E-value=2.1e-19 Score=131.32 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=87.3
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++..++++|+++
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 164 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFET 164 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEC
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEE
Confidence 35678999999999999999999999999999998776445689999999999998777788888999999999999999
Q ss_pred ecCCC---CCHHHHHHHHHHHHH
Q psy15004 82 SVGIN---HNVDELLVGILTQIR 101 (167)
Q Consensus 82 SA~~~---~~v~~lf~~l~~~i~ 101 (167)
||+++ .||+++|.+|++.+.
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 99999 999999999988764
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.80 E-value=3.6e-19 Score=127.00 Aligned_cols=99 Identities=29% Similarity=0.455 Sum_probs=87.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+ ..+.+..+++..++..++++++++|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~S 145 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESS 145 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEE
Confidence 46778999999999999999999999999999987653 357899999999999 4456677888899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.|++++|..|.+.+.++
T Consensus 146 a~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.80 E-value=2.3e-19 Score=129.19 Aligned_cols=101 Identities=19% Similarity=0.133 Sum_probs=87.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+..... ....|+++|+||+|+.+.+.+..+++..++..++++++
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 3567899999999999999999999999999988865311 12334899999999987777888889999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++||++|.||+++|++|++.+..
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=4.3e-19 Score=126.59 Aligned_cols=97 Identities=29% Similarity=0.384 Sum_probs=87.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+... ..+.+|+++|+||+|+.+.+++..+++..++..++++|+++|
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETS 149 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 5678899999999999999999999999999998765 346899999999999987777888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|++|.|++++|++|.+.+
T Consensus 150 a~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 150 AKNAININELFIEISRRI 167 (170)
T ss_dssp TTTTBSHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999998865
No 47
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.80 E-value=1.6e-19 Score=128.12 Aligned_cols=100 Identities=31% Similarity=0.466 Sum_probs=89.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++++|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.+++..+++..++..++++++++|
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS 146 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence 45678999999999999999999999999999887664456899999999999987777888888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|++.+.+
T Consensus 147 a~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 147 AKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 48
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.80 E-value=4e-19 Score=130.91 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=80.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC--CCCceEEEEEecCCCCC-ccccChhHHHHHHHhcCCeEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS--IRSKAVILVANKTDLVR-CRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~--~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~ 79 (167)
++..|++++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+ .+.+..+++..++..++++|+
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 567899999999999999999999999999999977533 25799999999999987 677888899999999999999
Q ss_pred EEecCC-CCCHHHHHHHHHHHHHhhh
Q psy15004 80 ETSVGI-NHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 80 e~SA~~-~~~v~~lf~~l~~~i~~~~ 104 (167)
++||++ |.||+++|++|++.+....
T Consensus 169 ~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ECCC-------CHHHHHHHHHHHHHH
T ss_pred EeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999887643
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=131.88 Aligned_cols=100 Identities=27% Similarity=0.393 Sum_probs=88.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc-CCeEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY-DCKFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~ 81 (167)
++..|++++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..+ +++|+++
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence 4678899999999999999999999999999888665 3357999999999999877778888888898875 7899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
||++|.||+++|++|++.+.++
T Consensus 170 SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 170 SAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988653
No 50
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=8.6e-19 Score=128.37 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=86.7
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~ 68 (167)
.++..||+++|++|+|||++++.+|+.+. .|+..+... ..++|+++|+||+|+.+. +.+..+++.
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 35678999999999999999999999997 799998765 247899999999999763 457778899
Q ss_pred HHHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 69 DMATAYDC-KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 69 ~~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
.++..+++ +|++|||++|.||+++|++|++.+.
T Consensus 159 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 159 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999998 9999999999999999999998876
No 51
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.3e-19 Score=131.60 Aligned_cols=99 Identities=26% Similarity=0.309 Sum_probs=88.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECB
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 56789999999999999999999999999999987653 45789999999999987677788889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.||+++|+.|.+.+..
T Consensus 167 a~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999887643
No 52
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.80 E-value=4.6e-19 Score=129.35 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=87.2
Q ss_pred hhhhcccCCCcEEEEEEeCC------CHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC
Q psy15004 2 EECIANYETPHGFIIVYSTI------DLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD 75 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t------~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~ 75 (167)
.++..||+++|++|+|||++ +..+|+.+..|+.++. ....++|+++|+||+|+.+. +..+++..++..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG 164 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence 35678999999999999999 6778888888998883 23468999999999999753 67788999999999
Q ss_pred C-eEEEEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 76 C-KFIETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 76 ~-~~~e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
+ +|+++||++|.||+++|++|++.+..+..
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 9 99999999999999999999999987654
No 53
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=8.2e-19 Score=128.03 Aligned_cols=100 Identities=23% Similarity=0.249 Sum_probs=88.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+. .+.+..+++..++..++++|+++|
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~S 158 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEAS 158 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEec
Confidence 5678899999999999999999999999999999665434679999999999995 456677888899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|+++.||+++|++|++.+...
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 159 AKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998753
No 54
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.79 E-value=2.4e-19 Score=133.14 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=85.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCccc--------cChhHHHHHHHh
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRV--------VTDEDGKDMATA 73 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--------v~~~~~~~~~~~ 73 (167)
++..||+++|++|+|||++++.+|+.+. .|+..+.... .++|+++||||+|+.+.+. +..+++..++..
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 5678999999999999999999999986 7999987652 4789999999999976554 367888889999
Q ss_pred cCC-eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 74 YDC-KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 74 ~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+++ +|++|||++|.||+++|++|++.+...
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 151 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 986 999999999999999999999988754
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=2.5e-19 Score=127.65 Aligned_cols=97 Identities=27% Similarity=0.410 Sum_probs=86.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc---cccChhHHHHHHHhcCCeEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~---~~v~~~~~~~~~~~~~~~~~ 79 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+. +.+..+++..++..++++|+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 56788999999999999999999999999999987653 457999999999999754 66777888889999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i 100 (167)
++||++|.|++++|++|.+.+
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 147 ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHTTS
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998755
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=128.95 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=87.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCC------------ccccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVR------------CRVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~~ 69 (167)
++..||+++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+ .+.+..+++..
T Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 161 (201)
T 2q3h_A 84 LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL 161 (201)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH
Confidence 5677999999999999999999999996 7999887652 4799999999999975 25567788899
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
++..+++ +|++|||++|.||+++|++|++.+....
T Consensus 162 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 162 LAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 9998887 9999999999999999999999987654
No 57
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.79 E-value=3.3e-19 Score=126.93 Aligned_cols=98 Identities=23% Similarity=0.289 Sum_probs=88.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+.+.+..+++..++..++++++++|
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 147 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 56788999999999999999999999999999987653 5789999999999987777778888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|.+.+.+
T Consensus 148 a~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 148 VKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTTBSSHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.79 E-value=1e-18 Score=126.72 Aligned_cols=102 Identities=25% Similarity=0.375 Sum_probs=90.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ +.+..+++..++..++++|+++
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIET 145 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEE
Confidence 356788999999999999999999999999999997765556899999999999974 5567788889999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||++|.|++++|++|++.+....
T Consensus 146 Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999987643
No 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=131.38 Aligned_cols=99 Identities=19% Similarity=0.314 Sum_probs=85.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC------CccccChhHHHHHHHhcCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV------RCRVVTDEDGKDMATAYDC 76 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~------~~~~v~~~~~~~~~~~~~~ 76 (167)
++..|++++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+. ..+.+..+++..++..+++
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA 171 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC
Confidence 4677899999999999999999999999999988665 23478999999999996 3466777888999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+|+++||++|.||+++|.+|++.+..
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998753
No 60
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=7e-19 Score=128.08 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=85.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
+...||+++|++|+|||++++.+|+.+ ..|+..+... ..++|+++||||+|+.+. +.++.+++..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 567899999999999999999999998 7899888665 257899999999999742 5577788999
Q ss_pred HHHhcC-CeEEEEecC-CCCCHHHHHHHHHHHHHh
Q psy15004 70 MATAYD-CKFIETSVG-INHNVDELLVGILTQIRL 102 (167)
Q Consensus 70 ~~~~~~-~~~~e~SA~-~~~~v~~lf~~l~~~i~~ 102 (167)
++..++ ++|++|||+ ++.||+++|+.+++.+..
T Consensus 149 ~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 149 MAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999887 699999999 689999999999998764
No 61
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=1.9e-18 Score=124.54 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=84.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC---CCCceEEEEEecCCCCC-ccccChhHHHHHHH-hcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS---IRSKAVILVANKTDLVR-CRVVTDEDGKDMAT-AYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~---~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~-~~~~~ 77 (167)
++..|++++|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.. .+.+..+++..++. ..+++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe
Confidence 467899999999999999999999999999998865432 25789999999999953 34566778888888 45789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
++++||++|.||+++|++|.+.+.+..
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999887643
No 62
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=1.3e-18 Score=128.85 Aligned_cols=101 Identities=30% Similarity=0.472 Sum_probs=88.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+ ..+.+..+++..++..++++|+++|
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~S 162 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESS 162 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECB
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEe
Confidence 46788999999999999999999999999999987653 347899999999999 4466677888889999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|++|.||+++|++|.+.+.....
T Consensus 163 a~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 63
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=9.3e-19 Score=126.43 Aligned_cols=98 Identities=20% Similarity=0.292 Sum_probs=85.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCccc----------cChhHHHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRV----------VTDEDGKDM 70 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~ 70 (167)
.++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.+. +..+++..+
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 35678999999999999999999999997 6999887652 4789999999999976554 367788889
Q ss_pred HHhcCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 71 ATAYDC-KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 71 ~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+..+++ +|++|||++|.||+++|+.|++.+.
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 149 KKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 998897 9999999999999999999998774
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=4.8e-18 Score=124.15 Aligned_cols=98 Identities=20% Similarity=0.206 Sum_probs=87.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..|++++|++|+|||++++.+|+.+..|+..+.... ++|+++|+||+| ...+.+..+++..++..++++++++|
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~S 184 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEe
Confidence 56788999999999999999999999999999987653 389999999999 55567778889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|++|.|++++|++|.+.+..+.
T Consensus 185 a~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 185 AKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887654
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.78 E-value=3.2e-18 Score=124.77 Aligned_cols=100 Identities=24% Similarity=0.350 Sum_probs=85.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++.+|++|+|||+++..+|+.+..|+..+.......++|+++|+||+|+.. +.+..+++..++..++++++++|
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~S 163 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETS 163 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEe
Confidence 46789999999999999999999999999999887654445789999999999976 55667888899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.|++++|++|++.+...
T Consensus 164 a~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 164 AKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.78 E-value=2.4e-18 Score=121.72 Aligned_cols=99 Identities=25% Similarity=0.393 Sum_probs=87.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++.+|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ +.+..+++..++..++++++++|
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETS 145 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEec
Confidence 45678999999999999999999999999999987664445799999999999976 55667788889999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|++|.+.+.+
T Consensus 146 a~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998753
No 67
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.77 E-value=3.7e-18 Score=122.74 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=86.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC---CCCceEEEEEecCCCCCccccChhHHHHHHH-hcCCeE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS---IRSKAVILVANKTDLVRCRVVTDEDGKDMAT-AYDCKF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~---~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-~~~~~~ 78 (167)
++..|++++|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+. .+.+..+++..++. ..++++
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCE
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceE
Confidence 467899999999999999999999999999998865432 2578999999999997 46677788888888 567899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+++||++|.|++++|++|++.+..
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998875
No 68
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.77 E-value=1.5e-18 Score=129.06 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=85.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
+...||+++|++|+|||++++.+|+.+ ..|+..+... ..++|+++||||+|+.+. +.+..+++..
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 567899999999999999999999998 7899988665 257899999999999742 5577788999
Q ss_pred HHHhcC-CeEEEEecC-CCCCHHHHHHHHHHHHHh
Q psy15004 70 MATAYD-CKFIETSVG-INHNVDELLVGILTQIRL 102 (167)
Q Consensus 70 ~~~~~~-~~~~e~SA~-~~~~v~~lf~~l~~~i~~ 102 (167)
+++.++ +.|++|||+ ++.||+++|+.|++.+..
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999887 699999999 689999999999998764
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.77 E-value=6.6e-19 Score=126.58 Aligned_cols=98 Identities=26% Similarity=0.346 Sum_probs=87.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++|
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 157 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 45678999999999999999999999999999886642 35789999999999987777888888899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|++|.|++++|+.|.+.+.
T Consensus 158 a~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999987653
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.77 E-value=1.2e-18 Score=129.89 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=87.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|+++|
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (218)
T 4djt_A 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEIS 155 (218)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEB
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEe
Confidence 45678999999999999999999999999999987653 34689999999999988778888888889888999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 83 VGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
|++|.||+++|++|++.+.....
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCCTT
T ss_pred cCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999876543
No 71
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=4.7e-19 Score=125.98 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=76.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---cChhHHHHHHHhcCCeEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---VTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~~ 79 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... +....+...+...+++++
T Consensus 60 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (164)
T 1r8s_A 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ 139 (164)
T ss_dssp HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEE
Confidence 45678999999999999999999999999998886543345789999999999975321 111111112223456899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+|||++|.|++++|++|++.+..
T Consensus 140 ~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 140 ATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC--
T ss_pred EcccCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999987753
No 72
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.77 E-value=1.2e-18 Score=128.73 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=79.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh--------
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA-------- 73 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-------- 73 (167)
.++..||+++|++|+|||++++.+|+.+..|+.++.......++|+++||||+|+.+ .+..+++..++..
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 161 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKG 161 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSS
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCccccccccc
Confidence 356789999999999999999999999999999886543345799999999999975 4556666666542
Q ss_pred ---------cCCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 74 ---------YDCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 74 ---------~~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
.+++|++|||++|.||+++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 162 SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999999764
No 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.77 E-value=6.9e-20 Score=135.13 Aligned_cols=99 Identities=29% Similarity=0.416 Sum_probs=78.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..|++++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..++++|+++|
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 176 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 176 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEE
Confidence 5678999999999999999999999999999998654 335799999999999988787877888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.||+++|++|++.+..
T Consensus 177 A~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp C---HHHHHHHHHHTTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=128.88 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=81.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCcc------------ccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCR------------VVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~ 69 (167)
++..||+++|++|+|||++++.+|+.+. .|+..+... ..++|+++|+||+|+.... .+..+++..
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 4667899999999999999999999986 799988665 2578999999999997643 567788899
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++..+++ +|++|||++|.||+++|+.|++.+...
T Consensus 176 ~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 176 MARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999998 999999999999999999999988753
No 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.77 E-value=1.8e-18 Score=125.24 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=86.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~ 68 (167)
.++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+. +.+..+++.
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 145 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 145 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHH
Confidence 35678999999999999999999999987 7998887652 37899999999999753 456778888
Q ss_pred HHHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 69 DMATAYDC-KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 69 ~~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.++..+++ +|+++||++|.|++++|+.|++.+..
T Consensus 146 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 89999987 99999999999999999999998864
No 76
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.77 E-value=1e-18 Score=128.03 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=80.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCC-------CCceEEEEEecCCCCCccc---cChhHHHH-H
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSI-------RSKAVILVANKTDLVRCRV---VTDEDGKD-M 70 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~-------~~~piilvgNK~Dl~~~~~---v~~~~~~~-~ 70 (167)
.++..||+++|++|+|||++++.+|+.+..|+..+...... .++|+|+|+||+|+.+... +....+.. +
T Consensus 78 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 157 (199)
T 4bas_A 78 GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL 157 (199)
T ss_dssp GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh
Confidence 35678999999999999999999999999999888543111 2789999999999976532 21111111 1
Q ss_pred HHhcCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 71 ATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 71 ~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
+...+++|++|||++|.||+++|++|++.+....
T Consensus 158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 158 MGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 2456789999999999999999999999988754
No 77
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.77 E-value=5.3e-18 Score=125.25 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=85.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
++..|++++|++|+|||++++.+|+.+ ..|+..+... ..++|+++|+||+|+.+. +.+..+++..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 567899999999999999999999998 6788888654 247899999999999765 4567788889
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++..+++ +|+++||++|.||+++|+.|.+.+.
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 167 MANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999888 8999999999999999999998775
No 78
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.76 E-value=1.3e-18 Score=124.25 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=79.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---cChhHHHHHHHhcCCeE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---VTDEDGKDMATAYDCKF 78 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~ 78 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... +....+...+...++++
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQI 145 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEE
Confidence 356789999999999999999999999999988886543335789999999999976432 11111122233456789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+++||++|.|++++|++|++.+.+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 146 FKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EECcCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999998864
No 79
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.76 E-value=2e-18 Score=126.73 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=78.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh--------
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA-------- 73 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-------- 73 (167)
.++..||+++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+ .++.++.......
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQR 159 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCcccccccc
Confidence 356789999999999999999999999999999886543345799999999999975 4455555554432
Q ss_pred ----cCCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 74 ----YDCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 74 ----~~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
.+++|++|||++|.||+++|++|++.
T Consensus 160 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 160 IEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 35689999999999999999998754
No 80
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=8.4e-18 Score=124.71 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=86.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~ 69 (167)
++..|++++|++|+|||++++.+|+.+ ..|+..+... ..++|+++|+||+|+.+. +.+..+++..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 567899999999999999999999998 6788888664 257899999999999754 4467778888
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++..+++ +|+++||++|.||+++|++|++.+...
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 167 MAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 9998888 999999999999999999999988753
No 81
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.76 E-value=7.4e-18 Score=124.28 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=86.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC---CCCceEEEEEecCCCCCccccChhHHHHHHH-hcCCeE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS---IRSKAVILVANKTDLVRCRVVTDEDGKDMAT-AYDCKF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~---~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-~~~~~~ 78 (167)
++..|++++|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+. .+.+..+++..++. ..+++|
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCE
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceE
Confidence 457899999999999999999999999999988865422 1468999999999997 45566777888887 667899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
+++||++|.|++++|++|++.+....
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987643
No 82
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.7e-18 Score=123.53 Aligned_cols=98 Identities=29% Similarity=0.443 Sum_probs=84.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC-CCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD-SIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
++..|++++|++|+|||++++.+|+.+..|+..+.... ...++|+++|+||+|+.+.+.+..+++..++..++++|+++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 146 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMET 146 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEe
Confidence 46678999999999999999999999999988876542 22478999999999998777777788888999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQI 100 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i 100 (167)
||++|.|++++|++|++.+
T Consensus 147 Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 147 SAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp BTTTTBSHHHHHHHHHHTC
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999998755
No 83
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.75 E-value=1e-18 Score=128.50 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=76.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---cChhHHHHHHHhcCCeEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---VTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~~ 79 (167)
++..||+++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+... +....+...+...+++++
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 168 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQ 168 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 56678999999999999999999999999998886543345799999999999975421 111111112223456899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+|||++|.||+++|++|++.+.
T Consensus 169 ~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 169 ATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ECBTTTTBTHHHHHHHHHHHTT
T ss_pred ECcCCCcCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 84
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=2.7e-18 Score=125.24 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=78.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---cChhHHHHHHHhcCCeEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---VTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~~ 79 (167)
.+..||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... +....+...+...+++++
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIV 161 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEE
Confidence 46789999999999999999999999999998886654446899999999999975422 111111122233456899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+|||++|.||+++|++|.+.+..
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EccCCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 85
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.75 E-value=3.6e-18 Score=126.61 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=84.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCccc------------cChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRV------------VTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~------------v~~~~~~ 68 (167)
.++..|++++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+... +..+++.
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 35678999999999999999999999996 7998887653 5789999999999976543 6778888
Q ss_pred HHHHhcCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 69 DMATAYDC-KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 69 ~~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.++..+++ +|++|||++|.||+++|++|++.+
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 89999886 699999999999999999998754
No 86
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=132.52 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=75.1
Q ss_pred CCcEEEEEEeCCCH--HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh-cCCeEEEEecCCC
Q psy15004 10 TPHGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA-YDCKFIETSVGIN 86 (167)
Q Consensus 10 ~ad~~i~v~d~t~~--~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~SA~~~ 86 (167)
+||++|+|||++++ .||+.+..|+.++.......++|+++||||+|+.+.+.+ +++..++.. .+++|++|||++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCC
Confidence 89999999999998 999999999998865422247899999999999766655 567778776 4889999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy15004 87 HNVDELLVGILTQIR 101 (167)
Q Consensus 87 ~~v~~lf~~l~~~i~ 101 (167)
.||+++|++|++.+.
T Consensus 240 ~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 240 VNVDLAFSTLVQLID 254 (255)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998764
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.9e-18 Score=125.92 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=79.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHH-----HhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA-----TAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~ 76 (167)
.++..||+++|++|+|||++++++|+.+..|+.++.......++|+++|+||+|+.+. ...++..... ...++
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~ 152 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQW 152 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCc
Confidence 4567899999999999999999999999999999865432357999999999999753 2233333322 23467
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++++|||++|.||+++|++|++.+..
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 153 HIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999998754
No 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=2.3e-18 Score=125.35 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=75.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHH-----HHhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDM-----ATAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----~~~~~~~ 77 (167)
++..||+++|++|+|||++++.+|+.+..|+.++.......++|+++||||+|+.+...+ ++.... +...+++
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQ 153 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEE
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceE
Confidence 457889999999999999999999999999988754333457899999999999754322 222111 1223568
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|||++|.||+++|++|++.+..
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 154 IQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTC--
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987653
No 89
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=7.1e-18 Score=123.52 Aligned_cols=99 Identities=27% Similarity=0.388 Sum_probs=84.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
++..||+++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+ +.+..+++..++..++++|+++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 150 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMET 150 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEE
Confidence 466789999999999999999999999888877755422 24789999999999975 5566788888999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||++|.||+++|++|++.+..
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 151 SAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp BTTTTBSHHHHHHHHHHHCSS
T ss_pred ecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987654
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.73 E-value=1.1e-17 Score=122.97 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=78.7
Q ss_pred hcccCCCcEEEEEEeCCCH--HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC-------ccccChhHHHHHHH---
Q psy15004 5 IANYETPHGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR-------CRVVTDEDGKDMAT--- 72 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~--~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~-------~~~v~~~~~~~~~~--- 72 (167)
..||+++|++|+|||++++ ++++.+..|+.++... ..++|+++||||+|+.+ .+.+..+++..++.
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 6899999999999999997 7778888888877433 35899999999999865 34566677788888
Q ss_pred -hcCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 73 -AYDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 73 -~~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.++++|++|||++ .||+++|..|++.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6788999999999 99999999999865
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=4.1e-18 Score=123.68 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=75.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHH-----HhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA-----TAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~ 76 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...++
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~ 157 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQW 157 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC--CHHHHHHHhCcccccCCce
Confidence 35678999999999999999999999999999888654224679999999999997532 222222222 23456
Q ss_pred eEEEEecCCCCCHHHHHHHHHHH
Q psy15004 77 KFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
++++|||++|.||+++|++|++.
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHHHTC
T ss_pred EEEEccCCCCcCHHHHHHHHHhh
Confidence 89999999999999999998764
No 92
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.73 E-value=1e-17 Score=125.29 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=84.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+... ..++..++...+++|++||
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S 155 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDIS 155 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECB
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEe
Confidence 46788999999999999999999999999999997653 4789999999999975443 2356678888899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.||+++|.+|.+.+...
T Consensus 156 a~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 156 AKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp GGGTBTTTHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=9.6e-18 Score=121.31 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=79.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH-----hcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT-----AYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~ 76 (167)
..+..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.. ..++...... ..++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~ 154 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSW 154 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCce
Confidence 35678999999999999999999999999999988654334689999999999997532 2223322221 2345
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++++|||++|.||+++|++|.+.+..+
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 155 SIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 899999999999999999999988653
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=1.2e-17 Score=121.35 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=79.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHH-----HhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA-----TAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 77 (167)
.+..|++++|++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.+... .++..... ...+++
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 155 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWR 155 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceE
Confidence 56789999999999999999999999999998886543345799999999999976432 22222221 134668
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+++|||++|.|++++|++|.+.+.+.
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988754
No 95
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=119.02 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=79.0
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCC--CCceEEEEEecCCCCCccccChhHHHHHHH-----hc
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSI--RSKAVILVANKTDLVRCRVVTDEDGKDMAT-----AY 74 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~--~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~ 74 (167)
.++..|++++|++|+|||++++.+|+.+..|+..+...... .++|+++|+||+|+.+. +..++...+.. ..
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 159 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDK 159 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSS
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCC
Confidence 35678999999999999999999999999999888665333 57899999999999753 23444544442 23
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 75 DCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 75 ~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++++++|||++|.||+++|++|.+.+..
T Consensus 160 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 160 PWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 6789999999999999999999987653
No 96
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=4.1e-18 Score=124.51 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=75.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH-----HHHhcCCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD-----MATAYDCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-----~~~~~~~~ 77 (167)
++..||+++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++... .+...+++
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 160 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREIC 160 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCee
Confidence 46788999999999999999999999999998886542335799999999999975321 111111 11223568
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+++|||++|.||+++|++|++.+..
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999886643
No 97
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=2e-17 Score=130.16 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=78.2
Q ss_pred hhhhcccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC--CeE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD--CKF 78 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~--~~~ 78 (167)
.+++.||+++|++|+|||++++. +|+.+..|+.++.. .++|++||+||+||.+.+.+ +++..++..++ ++|
T Consensus 76 ~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~ 149 (301)
T 1u0l_A 76 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPI 149 (301)
T ss_dssp EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCE
T ss_pred eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcE
Confidence 46789999999999999999987 78999999998754 37899999999999765543 45667777777 899
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~ 99 (167)
++|||++|.||+++|..+...
T Consensus 150 ~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 150 VKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp EECCTTTCTTHHHHHHHHSSS
T ss_pred EEEECCCCcCHHHHHHHhcCC
Confidence 999999999999999887653
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.71 E-value=5.3e-17 Score=127.79 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=86.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCc------------cccChhHHH
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRC------------RVVTDEDGK 68 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~ 68 (167)
.++..||+++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+. +.+..+++.
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 35678999999999999999999999986 7988886653 37899999999999653 567778899
Q ss_pred HHHHhcCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 69 DMATAYDC-KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 69 ~~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.++...++ +|++|||++|.||+++|+.|++.+..
T Consensus 296 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 296 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 99999997 99999999999999999999998864
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.68 E-value=2.7e-17 Score=119.84 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=80.4
Q ss_pred hhhcccCCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC---hhHHHHHHHhcCCe-
Q psy15004 3 ECIANYETPHGFIIVYSTIDL-ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT---DEDGKDMATAYDCK- 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~-~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~---~~~~~~~~~~~~~~- 77 (167)
+...||+++|++++|||++++ .+|+.+..|+.++.... .++|+++||||+|+.+.+.+. .+.+..++..++++
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA 149 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCE
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcc
Confidence 456789999999999999997 58999999999986642 478999999999997655443 34455666667876
Q ss_pred ---EEEEecCCCC-CHHHHHHHHHHHHHh
Q psy15004 78 ---FIETSVGINH-NVDELLVGILTQIRL 102 (167)
Q Consensus 78 ---~~e~SA~~~~-~v~~lf~~l~~~i~~ 102 (167)
|+++||+++. +++++++.|.+.+..
T Consensus 150 ~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 150 IRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred hhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 9999999997 999999999888765
No 100
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.68 E-value=2.8e-17 Score=132.11 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=85.6
Q ss_pred hhhhcccCCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc-----------
Q psy15004 2 EECIANYETPHGFIIVYSTID----------LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR----------- 60 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~----------~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~----------- 60 (167)
.++..||++++++|||||+++ ..+|++...|+..+.......++|+||||||+||...+
T Consensus 208 ~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp 287 (353)
T 1cip_A 208 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYP 287 (353)
T ss_dssp GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCT
T ss_pred HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhccc
Confidence 578999999999999999999 56799999999998764334679999999999995332
Q ss_pred ----ccChhHHHHHHH-----------hcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 61 ----VVTDEDGKDMAT-----------AYDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 61 ----~v~~~~~~~~~~-----------~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.++.+++..++. ..++.|++|||+++.||+++|.++.+.+...
T Consensus 288 ~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 288 EYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp TCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 356678888876 3567899999999999999999999988753
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.50 E-value=2.8e-18 Score=126.76 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=81.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCcc------------ccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCR------------VVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~ 69 (167)
++..|++++|++|+|||++++.+|+.+. .|+..+... ..++|+++|+||+|+.+.. .+..+++..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 4667899999999999999999999986 788888543 2378999999999997543 556677888
Q ss_pred HHHhcCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 70 MATAYDC-KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 70 ~~~~~~~-~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
+++.+++ +|++|||++|.||+++|+.|++.+
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 8888888 999999999999999999998765
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=5.3e-17 Score=135.37 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=77.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH-----HHHhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD-----MATAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-----~~~~~~~ 76 (167)
.++..||+++|++|+|||++++.+|+.+..|+.++.......++|+|||+||+|+.+... .++... ++...++
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 458 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNW 458 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCE
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCe
Confidence 457889999999999999999999999999998886644446899999999999975322 111111 1122345
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
+|++|||++|.||+++|++|++.+.....
T Consensus 459 ~~~~~SA~~g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 459 YVQPSCATSGDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHCC----
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 79999999999999999999998765443
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=129.26 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=77.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH-----HHHhcCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD-----MATAYDC 76 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-----~~~~~~~ 76 (167)
.++..||+++|++|+|||++++.+|+.+..|+..+.......++|+|+|+||+|+.+... .++... .+...++
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~ 301 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNW 301 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCE
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCC
Confidence 356789999999999999999999999988888876544446899999999999975432 111111 1222356
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+|++|||++|.||+++|+.|++.+..
T Consensus 302 ~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 302 YIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 89999999999999999999998754
No 104
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.66 E-value=1.3e-15 Score=112.24 Aligned_cols=101 Identities=29% Similarity=0.387 Sum_probs=88.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
+...|++++|++|+|||+++..+|+++..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...++.++++|
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~S 148 (199)
T 2f9l_A 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETS 148 (199)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEe
Confidence 4567889999999999999999999998999887654 234789999999999987777777888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy15004 83 VGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~~ 104 (167)
|+++.|++++|+.|.+.+....
T Consensus 149 al~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=4e-17 Score=129.63 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=76.4
Q ss_pred hhcccCCCcEEEEEEeCCCH--HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc-------cccChhHHHHHHHh-
Q psy15004 4 CIANYETPHGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC-------RVVTDEDGKDMATA- 73 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~--~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~-------~~v~~~~~~~~~~~- 73 (167)
+..||++|+++|+|||++++ ++++....|+.++... .+++|+++||||+||..+ ++|..+++.++++.
T Consensus 66 ~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 66 SERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 67899999999999999998 3333344445555433 357999999999999764 46777888888886
Q ss_pred ---cCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 74 ---YDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 74 ---~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+++.|+||||++ .||.++|..+++.+..
T Consensus 144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred ccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 688999999998 6999999999987653
No 106
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.64 E-value=1.3e-16 Score=128.29 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=81.2
Q ss_pred hhhhcccCCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--c-------
Q psy15004 2 EECIANYETPHGFIIVYSTI----------DLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--V------- 62 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t----------~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v------- 62 (167)
.++..||++++++|+|||++ +..+|+++..|+..+.......++|+||||||+||.+++. +
T Consensus 198 ~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~ 277 (354)
T 2xtz_A 198 RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEW 277 (354)
T ss_dssp GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGG
T ss_pred HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccccc
Confidence 57899999999999999998 7889999999999986643346799999999999854322 1
Q ss_pred ------------ChhHHHHHHHh----------------cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 63 ------------TDEDGKDMATA----------------YDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 63 ------------~~~~~~~~~~~----------------~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+.+++..++.. ..+.+++|||+++.||+++|.++.+.|...
T Consensus 278 fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 278 FRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp GTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 13566666432 124578999999999999999999988753
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.63 E-value=3.1e-16 Score=127.74 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=81.8
Q ss_pred hhhhcccCCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---cC-----
Q psy15004 2 EECIANYETPHGFIIVYSTID----------LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---VT----- 63 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~----------~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v~----- 63 (167)
.++..||++++++|||||+++ ..+|+++..|+..+.......++|+||||||+||...+. ++
T Consensus 232 ~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~ 311 (402)
T 1azs_C 232 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDY 311 (402)
T ss_dssp GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGT
T ss_pred hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhc
Confidence 578999999999999999999 899999999999997654456899999999999864432 21
Q ss_pred ----------------------hhHHHHHH-----Hh--------cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 64 ----------------------DEDGKDMA-----TA--------YDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 64 ----------------------~~~~~~~~-----~~--------~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.+++..++ .. .++.+++|||+++.||+++|..+.+.|...
T Consensus 312 fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 312 FPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 24455553 21 246788999999999999999998887753
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.62 E-value=2.1e-15 Score=113.49 Aligned_cols=96 Identities=10% Similarity=0.073 Sum_probs=75.2
Q ss_pred cccCCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChh---HHHHHHHhcC--CeE
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHV--AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDE---DGKDMATAYD--CKF 78 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~--~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~---~~~~~~~~~~--~~~ 78 (167)
.|+..+|++|+|||++++.+|+. ...|+..+... ..++|+++|+||+|+.+.+.+..+ ....++...+ ++|
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 45788999999999999888752 34577776442 247899999999999876666543 4556677777 899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++|||++|.||+++|++|++.+...
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.62 E-value=3.4e-16 Score=112.07 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=73.1
Q ss_pred hhhcccC--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANYE--TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~--~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+...||+ ++|++++|||+++.+. ...|+.++... ++|+++|+||+|+...+.+.. ++..++..++++|++
T Consensus 72 ~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~ 143 (165)
T 2wji_A 72 IARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM----GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVP 143 (165)
T ss_dssp HHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT----TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEE
T ss_pred HHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc----CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEE
Confidence 3467775 8999999999998543 45587777542 689999999999975555543 467788888999999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i 100 (167)
+||++|.||+++|++|++.+
T Consensus 144 ~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 144 LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CBGGGTBSHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 110
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.62 E-value=3.4e-16 Score=126.17 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=82.2
Q ss_pred hhhhcccCCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc-----------
Q psy15004 2 EECIANYETPHGFIIVYSTID----------LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR----------- 60 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~----------~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~----------- 60 (167)
.++..||++++++|||||+++ ..+|++...|+..+.......++|+||||||+||..++
T Consensus 216 ~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp 295 (362)
T 1zcb_A 216 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFL 295 (362)
T ss_dssp --CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCT
T ss_pred hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCc
Confidence 578899999999999999999 78999999999998764334679999999999986432
Q ss_pred -----ccChhHHHHHHH-----------hcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 61 -----VVTDEDGKDMAT-----------AYDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 61 -----~v~~~~~~~~~~-----------~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.++.+++..++. ..++.+++|||+++.||+++|.++.+.|...
T Consensus 296 ~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 296 EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 255677777651 3457899999999999999999999988753
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.61 E-value=8.1e-16 Score=114.16 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=66.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHH-HHHHHHHHHHH-HHhh-CCCCCceEEEEEecCCCCCcccc-----------------
Q psy15004 3 ECIANYETPHGFIIVYSTIDLA-SFHVAEQCLQA-LWKK-DSIRSKAVILVANKTDLVRCRVV----------------- 62 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~-l~~~-~~~~~~piilvgNK~Dl~~~~~v----------------- 62 (167)
++..||+++|++|+|||+++.. ++..+..|+.. +... ....++|+++|+||+|+......
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 150 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT 150 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence 5677899999999999999953 56666554444 3321 12347899999999999754321
Q ss_pred -----------------ChhHHHHHHHhc---CCeEEEEecCCC------CCHHHHHHHHHHH
Q psy15004 63 -----------------TDEDGKDMATAY---DCKFIETSVGIN------HNVDELLVGILTQ 99 (167)
Q Consensus 63 -----------------~~~~~~~~~~~~---~~~~~e~SA~~~------~~v~~lf~~l~~~ 99 (167)
..+++..++.+. ++.|+||||++| .||+++|++|.+.
T Consensus 151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111122222211 668999999999 9999999999875
No 112
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.61 E-value=5.6e-15 Score=108.33 Aligned_cols=97 Identities=29% Similarity=0.394 Sum_probs=84.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
....||++++++++|||+++..+|+++..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...++.++++|
T Consensus 94 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~S 172 (191)
T 1oix_A 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 172 (191)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 4567889999999999999999999998899887554 234689999999999987677777889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQI 100 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i 100 (167)
|+++.|++++|+.|.+.+
T Consensus 173 ald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 173 ALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 113
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.60 E-value=1.6e-15 Score=119.45 Aligned_cols=93 Identities=15% Similarity=0.015 Sum_probs=76.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC-hhHHHHHHHhcCCeEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT-DEDGKDMATAYDCKFI 79 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~~~~~~~~~~~ 79 (167)
.+.+.|++++|++|+|||++++. +|+.+..|+..+.. .++|+++|+||+||.+...+. .++...++...+++++
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~ 146 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVL 146 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEE
Confidence 35678999999999999999986 89999999988754 378999999999997654332 3455566677789999
Q ss_pred EEecCCCCCHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILT 98 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~ 98 (167)
++||++|.|++++|..+..
T Consensus 147 ~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 147 KVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ECCTTTCTTHHHHHHHTTT
T ss_pred EEECCCCCCHHHHHhhccC
Confidence 9999999999999987643
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.60 E-value=1.6e-15 Score=119.51 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=80.1
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh-CCCCCceEEEEEecCCCCC--ccc----cChhHHHHHHHhc
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKK-DSIRSKAVILVANKTDLVR--CRV----VTDEDGKDMATAY 74 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~-~~~~~~piilvgNK~Dl~~--~~~----v~~~~~~~~~~~~ 74 (167)
.++..||+++|++|+|||++++.+|+++..|...+... ...+++|+++||||+|+.+ .+. +..+++..++..+
T Consensus 72 ~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp TTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 35678899999999999999999999997775544332 1135799999999999986 454 5667888899998
Q ss_pred C---CeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 75 D---CKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 75 ~---~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
| ++|++|||++ .++.++|..+++.+
T Consensus 152 g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 152 GFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 7 7999999999 89999999988754
No 115
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.59 E-value=7.9e-16 Score=122.36 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=84.0
Q ss_pred hhhhcccCCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc-----------
Q psy15004 2 EECIANYETPHGFIIVYSTI----------DLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR----------- 60 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t----------~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~----------- 60 (167)
.++..||++++++|+|||++ +..+|++...|+..+.......++|+||+|||+||.+++
T Consensus 182 ~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp 261 (327)
T 3ohm_A 182 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFP 261 (327)
T ss_dssp TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCT
T ss_pred HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhch
Confidence 57889999999999999654 678899888899888665444689999999999996544
Q ss_pred -----ccChhHHHHHH----------HhcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 61 -----VVTDEDGKDMA----------TAYDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 61 -----~v~~~~~~~~~----------~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.++.+++..+. ...++.+++|||+++.||+++|..+.+.|...
T Consensus 262 ~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 262 EYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 35667777773 34567889999999999999999999998864
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.56 E-value=1.6e-15 Score=110.04 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=75.9
Q ss_pred hhhcccCC-CcEEEEEEeCCCHHHHHHH-HHHHHH--------HHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH
Q psy15004 3 ECIANYET-PHGFIIVYSTIDLASFHVA-EQCLQA--------LWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT 72 (167)
Q Consensus 3 ~~~~y~~~-ad~~i~v~d~t~~~s~~~~-~~~~~~--------l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~ 72 (167)
++..||++ ++++++||+++|..+|+.+ ..|... +.......++|+++|+||+|+.... .+++..++.
T Consensus 71 ~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~ 147 (190)
T 2cxx_A 71 EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAE 147 (190)
T ss_dssp HHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHH
T ss_pred HHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHH
Confidence 34567887 8988899999998899887 667642 2111112478999999999997644 456777888
Q ss_pred hcCCe-------EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 73 AYDCK-------FIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 73 ~~~~~-------~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.++++ +++|||++|.||+++|++|++.+...
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 88764 79999999999999999999988753
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.54 E-value=1.9e-15 Score=109.06 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=68.5
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 84 (167)
..||+++|++|+|||++++.+|+. ..|+..+.... ..++|+++|+||+|+.+... .++...+++|++|||+
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSAR 148 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTT
T ss_pred HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCC
Confidence 357899999999999999888874 56887776542 34789999999999854211 1122346789999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15004 85 INHNVDELLVGILTQIR 101 (167)
Q Consensus 85 ~~~~v~~lf~~l~~~i~ 101 (167)
+|.||+++|+.|.+.+.
T Consensus 149 ~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TCTTHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999988764
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.52 E-value=1.6e-14 Score=101.91 Aligned_cols=88 Identities=18% Similarity=0.139 Sum_probs=65.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
.+..|++.+|++|+|||+++..++. ..|+.++... .++|+++|+||+|+.+.. +++..++ .+++ +|+++
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~ 141 (161)
T 2dyk_A 72 KVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPT 141 (161)
T ss_dssp HHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEEC
T ss_pred HHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEE
Confidence 3567899999999999999854433 2233232222 368999999999997542 3444555 5677 89999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQI 100 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i 100 (167)
||++|.|++++|++|++.+
T Consensus 142 Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 142 SSEHARGLEELLEAIWERL 160 (161)
T ss_dssp BTTTTBSHHHHHHHHHHHC
T ss_pred ecccCCChHHHHHHHHHhC
Confidence 9999999999999998764
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.50 E-value=3.8e-14 Score=111.72 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=80.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcC--CeEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD--CKFIE 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e 80 (167)
.+..|++++|++|+|+|+++..++++...|+..+.. .++|+++|+||+|+........+....+...++ .++++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 456789999999999999998888888888888855 368999999999997445555666777777775 68999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+||++|.|++++|+.|.+.+..
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988754
No 120
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.50 E-value=1.1e-14 Score=116.34 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=80.5
Q ss_pred hhhhcccCCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc----------
Q psy15004 2 EECIANYETPHGFIIVYSTI----------DLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---------- 61 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t----------~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---------- 61 (167)
.++..||++++++|+|||++ +..+|++...|+..+.......++|+||+|||+||..++.
T Consensus 176 ~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp 255 (340)
T 4fid_A 176 KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFP 255 (340)
T ss_dssp HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCT
T ss_pred ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhh
Confidence 47889999999999999999 7889999989998887654456899999999999854221
Q ss_pred -----cChhHHHHHHH-hc--------------------------CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 62 -----VTDEDGKDMAT-AY--------------------------DCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 62 -----v~~~~~~~~~~-~~--------------------------~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
...+++..++. .+ ++.+++|||+++.||+.+|..+.+.|..
T Consensus 256 ~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 256 EYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 12345544432 22 3678999999999999999999998876
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.50 E-value=3.4e-14 Score=103.58 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=67.9
Q ss_pred hhcccCCC---cEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHH-HHHhcCCe
Q psy15004 4 CIANYETP---HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKD-MATAYDCK 77 (167)
Q Consensus 4 ~~~y~~~a---d~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~-~~~~~~~~ 77 (167)
...|++.+ |++|+|||+++..++.... ++..+.. .++|+++|+||+|+.+.+.+.. ++... ++...+++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 55677777 9999999999987777642 2233322 3689999999999987554432 22222 33234679
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++++||++|.||+++|++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999988763
No 122
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.49 E-value=2.8e-13 Score=97.08 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=64.8
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH-------
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT------- 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~------- 72 (167)
++..|+..+|++|+|||+++ ..+++. +..+.. .++|+++|+||+|+.+.. .++......
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----l~~~~~----~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~ 139 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVEA----INHAKA----ANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPE 139 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHHH----HHHHGG----GSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBT
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHHH----HHHHHh----CCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChh
Confidence 45678899999999999998 444443 233322 368999999999997531 122222222
Q ss_pred hcC--CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 73 AYD--CKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 73 ~~~--~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
.++ ++|++|||++|.||+++|++|++.+...
T Consensus 140 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 140 EWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp TTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred HcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 222 5899999999999999999999987753
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=1.7e-14 Score=104.57 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred hhhcccC--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANYE--TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~--~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
++..||. .+|++++|+|.++ ++....|+.++.. .++|+++|+||+|+...+.+. .++..++..+++++++
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 147 (188)
T 2wjg_A 76 IARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVP 147 (188)
T ss_dssp HHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEE
T ss_pred HHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEE
Confidence 3556775 4999999999875 5666778888754 368999999999997555444 4677888888999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+||+++.||+++|+.+++.+..
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTT
T ss_pred EEecCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.46 E-value=9.8e-14 Score=100.75 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=67.7
Q ss_pred hhhcccCCC---cEEEEEEeCCCHHH--HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcc--ccChhHHHHHHHhc-
Q psy15004 3 ECIANYETP---HGFIIVYSTIDLAS--FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR--VVTDEDGKDMATAY- 74 (167)
Q Consensus 3 ~~~~y~~~a---d~~i~v~d~t~~~s--~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~--~v~~~~~~~~~~~~- 74 (167)
+...||+++ |++++|+|.++..+ +..+..|+... ++|+++|+||+|+.+.. .+..+++..++...
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 345677666 99999999987533 33344454432 68999999999997533 33345556666664
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 75 DCKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 75 ~~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+++|+++||++|.||+++|++|.+.+.
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 469999999999999999999998774
No 125
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.44 E-value=1.9e-13 Score=105.24 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=73.7
Q ss_pred hhhccc--CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANY--ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~--~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
++..|+ .++|++|+|||+++.++. ..|..++... ++|+++|+||+|+...+.+. .++..++..+|+++++
T Consensus 74 v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~----~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~ 145 (258)
T 3a1s_A 74 IARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM----EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVF 145 (258)
T ss_dssp HHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT----TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEE
T ss_pred HHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc----CCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEE
Confidence 345676 589999999999986543 3466676543 68999999999997655554 3477888899999999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+||++|.|++++|+.|.+.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 146 TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHhh
Confidence 999999999999999998765
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.43 E-value=1.1e-13 Score=116.46 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=77.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
....|++++|++|+|||+++. +.+..|+.++.... .++|+|+||||+|+.+.+.+..+++..++...+++++++|
T Consensus 114 ~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 114 SHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRIS 188 (535)
T ss_dssp TCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred HHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence 355688899999999999764 55677998887653 4689999999999988777777888888888899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy15004 83 VGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~~ 103 (167)
|++|.||+++|+.|.+.+...
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp C-----CTTHHHHHHHHHTCT
T ss_pred cCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999988654
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.42 E-value=7.3e-13 Score=106.28 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=76.7
Q ss_pred cccCCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 6 ANYETPHGFIIVYSTIDLA--SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~--s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
.++..+|++|+|+|+++.. +++....|+.++.... .+.|+|+|+||+|+.....+ +++..++...+++++++||
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence 3556799999999999877 7888888998886642 27899999999999765443 4455666777889999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15004 84 GINHNVDELLVGILTQIRL 102 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~ 102 (167)
++|.||+++|++|.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999998865
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.40 E-value=2e-13 Score=105.92 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=72.9
Q ss_pred hhhcccC--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANYE--TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~--~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
++..|+. ++|++|+|||+++.+++ ..|..++.. .++|+++|+||+|+...+.+. .++..++..+++++++
T Consensus 71 v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~ 142 (272)
T 3b1v_A 71 VARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVA 142 (272)
T ss_dssp HHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEE
T ss_pred HHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEE
Confidence 4566776 69999999999986544 456666654 268999999999987544444 4567788889999999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~ 101 (167)
|||++|.||+++|+.|++.+.
T Consensus 143 ~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSCT
T ss_pred EEccCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 129
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.39 E-value=3.5e-13 Score=107.81 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=76.5
Q ss_pred hcccC---CCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcC--
Q psy15004 5 IANYE---TPHGFIIVYSTID---LASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD-- 75 (167)
Q Consensus 5 ~~y~~---~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-- 75 (167)
..|++ .+|++|+|||+++ +++++++..|+.++..... ..++|+++|+||+|+.... +....++..++
T Consensus 228 ~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~ 303 (342)
T 1lnz_A 228 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDD 303 (342)
T ss_dssp HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSC
T ss_pred HHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcC
Confidence 44544 4999999999998 7899999999999876532 2578999999999997532 34556667666
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++++++||+++.|++++|..|.+.+..
T Consensus 304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 304 YPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 689999999999999999999998864
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=1.1e-12 Score=108.46 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=74.4
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc-----CCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY-----DCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~ 79 (167)
..|++.||++|+|+|+++..+ +....|+..+.. .++|+|+|+||+|+.+.+.+..+++...+... +++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 357899999999999987433 223446666644 36899999999999876666666666666544 57999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhC
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~~~ 105 (167)
++||++|.||+++|+.+.+.+.....
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998876543
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.38 E-value=1.7e-13 Score=105.42 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=69.8
Q ss_pred hhhccc--CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANY--ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~--~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
++..|+ +++|++|+|+|+++.+++..+. .++.. .++|+++|+||+|+...+.+. .....++..+++++++
T Consensus 74 i~~~~~~~~~~d~vi~VvDas~~~~~~~l~---~~l~~----~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~ 145 (256)
T 3iby_A 74 IAAQSVIDLEYDCIINVIDACHLERHLYLT---SQLFE----LGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIP 145 (256)
T ss_dssp HHHHHHHHSCCSEEEEEEEGGGHHHHHHHH---HHHTT----SCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEE
T ss_pred HHHHHHhhCCCCEEEEEeeCCCchhHHHHH---HHHHH----cCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEE
Confidence 456778 8999999999999876665443 33422 268999999999987544332 2345678888999999
Q ss_pred EecCCCCCHHHHHHHHHHH
Q psy15004 81 TSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~ 99 (167)
+||++|.|++++|+.|.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999876
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.36 E-value=1.5e-12 Score=107.08 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=73.5
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH-HHHHh----cCCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK-DMATA----YDCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~ 79 (167)
..|++.||++|+|||+++..++++. .|+..+.. .++|+|+|+||+|+.+.+.+..++.. .+... .+++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3588999999999999998888875 47777754 36899999999999865544333332 22222 367999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
++||++|.||+++|+.+.+.+....
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEecccCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998876543
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.36 E-value=1.6e-12 Score=108.10 Aligned_cols=93 Identities=11% Similarity=-0.024 Sum_probs=68.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..|++++|++|+|||++++.+++.+..+...+... .++|+|+|+||+|+.....+. ...+......+++++|
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vS 378 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGIS 378 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECB
T ss_pred HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEE
Confidence 3567899999999999999988876433333333222 268999999999997654432 2334443236899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|++|.||+++|++|.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999886
No 134
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.33 E-value=2.8e-12 Score=95.40 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=65.2
Q ss_pred hhcccCC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHH-HHHh----
Q psy15004 4 CIANYET---PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKD-MATA---- 73 (167)
Q Consensus 4 ~~~y~~~---ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~-~~~~---- 73 (167)
...|++. +|++|+|+|.++..+.. ...|+..+.. .++|+++|+||+|+.....+.. +.... +...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 3456665 88899999998753322 2446666643 3689999999999976443211 11222 2221
Q ss_pred --cCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 74 --YDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 74 --~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.+++++++||++|.||+++|+.|.+.+..
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 45689999999999999999999988754
No 135
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.32 E-value=7.4e-13 Score=102.70 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=66.8
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
+++|++|+|+|.++.+++.. |..++... ++|+|+|+||+|+.+.+.+. .....++..++++++++||++|.|
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~---~~~~l~~~----~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~g 155 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRG 155 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHH---HHHHHHHH----TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHH
T ss_pred cCCCEEEEEecCCChHHHHH---HHHHHHhc----CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCC
Confidence 79999999999998665544 44444333 68999999999986544332 345677888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy15004 89 VDELLVGILTQIR 101 (167)
Q Consensus 89 v~~lf~~l~~~i~ 101 (167)
++++|+.|.+.+.
T Consensus 156 i~el~~~i~~~~~ 168 (274)
T 3i8s_A 156 IEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877654
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.32 E-value=4.3e-13 Score=110.05 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
+..|++++|++|+|||++... ....|+..+... ++|+|+|+||+|+...... +.+..++..++++++++||
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSA 177 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSA 177 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSS
T ss_pred HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEEC
Confidence 566899999999999994432 335677777554 7899999999999865543 5566677778899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy15004 84 GINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 84 ~~~~~v~~lf~~l~~~i~~~ 103 (167)
++|.|++++|+.|.+.+...
T Consensus 178 ktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999988554
No 137
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=3.8e-13 Score=99.87 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=62.0
Q ss_pred hhhcccCC----CcEEEEEEeCC-CHHHHHHHHHHHHHHHhhC---CCCCceEEEEEecCCCCCccccC------hhHHH
Q psy15004 3 ECIANYET----PHGFIIVYSTI-DLASFHVAEQCLQALWKKD---SIRSKAVILVANKTDLVRCRVVT------DEDGK 68 (167)
Q Consensus 3 ~~~~y~~~----ad~~i~v~d~t-~~~s~~~~~~~~~~l~~~~---~~~~~piilvgNK~Dl~~~~~v~------~~~~~ 68 (167)
+...||++ +|++|+|||++ ++.+|+.+..|+.++.... ...++|+++|+||+|+...+.+. .+++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~ 150 (218)
T 1nrj_B 71 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 150 (218)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHH
Confidence 45667776 89999999999 8899999999988876532 23579999999999998765543 45567
Q ss_pred HHHHhcCCeEEEEecCCCCC
Q psy15004 69 DMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 69 ~~~~~~~~~~~e~SA~~~~~ 88 (167)
.++...++.|+++||++|.+
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 151 KVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHC--------
T ss_pred HHHHHHhccccccccccccc
Confidence 77777788999999999876
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.30 E-value=6e-12 Score=104.82 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=68.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..|++.||++|+|||++++.++++.. +++.+ .+.|+|+|+||+|+.+. +..++...++. ++++++++|
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iS 385 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKIS 385 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEE
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEE
Confidence 3567899999999999999988877643 33333 26799999999999653 33344444332 446899999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|+.|.+.+..
T Consensus 386 Aktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 386 ALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GGGTCCHHHHHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987664
No 139
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.26 E-value=5.6e-12 Score=97.32 Aligned_cols=94 Identities=21% Similarity=0.129 Sum_probs=72.7
Q ss_pred hhccc--CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 4 CIANY--ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 4 ~~~y~--~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+..|+ .++|++|+|+|.++.. ....|..++... ..+|+++|+||+|+.+.+.+.. ....+++.++++++++
T Consensus 73 ~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 73 ARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPT 145 (271)
T ss_dssp HHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEEC
T ss_pred HHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEE
Confidence 45666 7899999999998753 334455555443 2389999999999875444433 3677888899999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 82 SVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
||++|.|++++|+.+...+....
T Consensus 146 Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHHHTCC
T ss_pred EeCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999876543
No 140
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=97.25 Aligned_cols=99 Identities=9% Similarity=-0.036 Sum_probs=68.0
Q ss_pred ChhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHH---HhhCC-CCCceEEEEEecC-CCCCccccChhHHHHHHH---
Q psy15004 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQAL---WKKDS-IRSKAVILVANKT-DLVRCRVVTDEDGKDMAT--- 72 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l---~~~~~-~~~~piilvgNK~-Dl~~~~~v~~~~~~~~~~--- 72 (167)
|.++..||.++|++|||+|.+|++.++ ....+.++ ..... ..++|++|.+||. |+.. .++..+......
T Consensus 116 RplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~ 192 (227)
T 3l82_B 116 IPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNL 192 (227)
T ss_dssp -CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGG
T ss_pred HHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcC
Confidence 357889999999999999999976544 33333222 22211 3678999999995 7753 233333222111
Q ss_pred -hcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 73 -AYDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 73 -~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
...+.+..|||.+|+|+.+.++||+..+..
T Consensus 193 l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 193 LNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 235678999999999999999999987643
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.22 E-value=2e-11 Score=101.14 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=66.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+..+++++|++|+|||++++.+++. ..|+..+. ..|+|+|+||+|+.....+. ....+. .+.+++++|
T Consensus 296 ~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iS 364 (462)
T 3geh_A 296 RSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTA 364 (462)
T ss_dssp ---CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEB
T ss_pred HHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEE
Confidence 35678999999999999998766655 45666652 36999999999997655432 111111 356899999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy15004 83 VGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~~ 102 (167)
|++|.|++++|+.|.+.+..
T Consensus 365 Aktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 365 AAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TTTTBSHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=1.7e-11 Score=100.87 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=66.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHH-HHHHHhcCC-eE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHV--AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG-KDMATAYDC-KF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~--~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~~~~~~~-~~ 78 (167)
++..||++||++|+|||+++..++.+ +..|+.. .++|+++|+||+|+.+. . ..+. ..+. .+++ .+
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~ 142 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEP 142 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSC
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCE
Confidence 46789999999999999987554442 2333322 26899999999998532 1 1122 3333 4576 78
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+++||++|.|++++|+.+++.+...
T Consensus 143 ~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 143 IPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEeccCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999999988753
No 143
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.21 E-value=1.2e-11 Score=97.25 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=65.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHH-HHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh-cC-CeEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCL-QALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA-YD-CKFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~-~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~ 79 (167)
.+..||+++|++|+|||+++..+.. ..|+ ..+... ..++|+++|+||+|+...... ....+.. .+ .+++
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~ 150 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPR 150 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEE
T ss_pred HHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEE
Confidence 3567899999999999999865444 3454 455432 246899999999999754320 1222333 23 4799
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++||++|.|++++|+.|...+.
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCHHHHHHHHHHhcc
Confidence 9999999999999999987654
No 144
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.18 E-value=4.6e-11 Score=96.37 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=67.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH----HHHHhcCC--
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK----DMATAYDC-- 76 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~----~~~~~~~~-- 76 (167)
....|++.+|++|+|+|++|+. ..|..++.+.. .+.|+++|+||+||.+.. +..+... .++...|+
T Consensus 62 ~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~~~g~~~ 133 (368)
T 3h2y_A 62 ILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAKQLGLKP 133 (368)
T ss_dssp HHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHHHcCCCc
Confidence 4567889999999999999853 45666665542 378999999999997532 2222333 33566677
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 77 -KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 77 -~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.++++||++|.|++++++.+.+..
T Consensus 134 ~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 134 EDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 799999999999999999887643
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.17 E-value=5e-11 Score=97.06 Aligned_cols=97 Identities=22% Similarity=0.194 Sum_probs=71.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC--hhHHHHHHHhc---CCe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT--DEDGKDMATAY---DCK 77 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~~~~~---~~~ 77 (167)
.+..++..+|++|+|+|+++..++....+|+..+.... ..|+|+|+||+|+.+..... .++...+.... +++
T Consensus 91 ~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (403)
T 3sjy_A 91 TMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVP 167 (403)
T ss_dssp HHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred HHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCE
Confidence 45678899999999999998766777777777665441 24899999999997643221 12222333222 568
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++++||++|.|++++|+.|.+.+..
T Consensus 168 ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 168 IIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCcChHHHHHHHHHhCCC
Confidence 9999999999999999999886643
No 146
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.14 E-value=8.5e-11 Score=100.15 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=74.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC---eEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC---KFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---~~~ 79 (167)
....+++.+|++|+|+|+++..+++....|...+. .++|+|+|+||+|+.+.. ..+...++...+++ .++
T Consensus 87 ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 87 EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEE
Confidence 34567889999999999999777787777876652 268999999999997543 23344556666676 499
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++||++|.||+++|+.|++.+...
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSCCC
T ss_pred EeecccCCCchhHHHHHhhcCCCc
Confidence 999999999999999999877543
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.13 E-value=3.3e-10 Score=91.24 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=70.3
Q ss_pred hcccCCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc-ChhHHHHHHHhc---CCeE
Q psy15004 5 IANYETPHGFIIVYSTIDLA--SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV-TDEDGKDMATAY---DCKF 78 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~--s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v-~~~~~~~~~~~~---~~~~ 78 (167)
..++..||++++|+|++++. +++.+..|...+... ...+.|+|+|+||+|+...... ..+.+..++..+ +.++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 34678999999999999876 566666666555443 3357899999999998653310 012233344444 3478
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 79 IETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+++||+++.|++++++.|.+.+...
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhccc
Confidence 9999999999999999999877653
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.11 E-value=1.7e-10 Score=98.20 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=73.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC---eEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC---KFI 79 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---~~~ 79 (167)
....+++.+|++|+|+|+++..+++....|...+. .++|+|+|+||+|+.... ..+...++...+++ .++
T Consensus 89 ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 89 EVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCE
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEE
Confidence 34567889999999999999878888887866552 368999999999997533 12334556666676 489
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++||++|.||+++|+.|++.+..
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEeecCCCchHHHHHHHHhccc
Confidence 99999999999999999987754
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.11 E-value=1.5e-10 Score=95.25 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=67.4
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH-HHHHh----cCCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK-DMATA----YDCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~ 79 (167)
..+++.+|++++|+|+++..++++. .+...+.. .+.|+++|+||+|+.+.+....++.. .+... .+++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 4578889999999999986666542 23333322 36899999999999765443333222 22222 356899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 80 ETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
++||++|.||+++|+.+.+.+...
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998877654
No 150
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.10 E-value=1.4e-10 Score=90.97 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=68.0
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEe
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETS 82 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 82 (167)
+..+++.+|++++|+|.++ +.....|+.+.... .+.|+|+|+||+|+...+....+....++..+++ .++++|
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred HHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence 4678999999999999976 33334454433222 3689999999999975333233455556666776 799999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|+++.|++++++.+...+.
T Consensus 156 A~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999999999999887654
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.10 E-value=2.7e-10 Score=94.85 Aligned_cols=92 Identities=18% Similarity=0.120 Sum_probs=67.8
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhc---
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAY--- 74 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~--- 74 (167)
+...++..+|++|+|+|+++ +.+++.+. .+.. .++|+|+|+||+|+.+.... ..++...+....
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence 45678899999999999988 55655433 2222 25788999999999753221 223444555544
Q ss_pred -CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 75 -DCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 75 -~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+++++++||++|.|++++++.|.+.+..
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 5689999999999999999999998763
No 152
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.09 E-value=4.7e-11 Score=98.11 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=64.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
.+..|+++||++|+|+|+++..++.+ .|+.++.+. .++|+++|+||+|+..... +...+. ..++ .++++
T Consensus 75 ~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~i 144 (436)
T 2hjg_A 75 QAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPI 144 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEEC
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEE
Confidence 46778999999999999998766553 344443222 4789999999999864321 111222 3455 78999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy15004 82 SVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~~ 102 (167)
||++|.|++++|+++.+.+..
T Consensus 145 SA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 145 SGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp BTTTTBTHHHHHHHHHHTGGG
T ss_pred eCcCCCChHHHHHHHHHhcCc
Confidence 999999999999999987753
No 153
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.08 E-value=4.2e-11 Score=93.25 Aligned_cols=99 Identities=10% Similarity=-0.019 Sum_probs=67.8
Q ss_pred ChhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHH---HHHhhC-CCCCceEEEEEec-CCCCCccccChhHHHHHHH---
Q psy15004 1 PEECIANYETPHGFIIVYSTIDLASFHVAEQCLQ---ALWKKD-SIRSKAVILVANK-TDLVRCRVVTDEDGKDMAT--- 72 (167)
Q Consensus 1 ~~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~---~l~~~~-~~~~~piilvgNK-~Dl~~~~~v~~~~~~~~~~--- 72 (167)
|.++..||.++|++|||+|.+|++.++ ....+. .+.... ...++|++|.+|| .|+.. .++..+..+...
T Consensus 201 RplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~L~L~~ 277 (312)
T 3l2o_B 201 IPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNL 277 (312)
T ss_dssp CHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHHTTGGG
T ss_pred HHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHHcCCcc
Confidence 457889999999999999999987554 222222 222111 1357899999997 58853 233332222111
Q ss_pred -hcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 73 -AYDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 73 -~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
...+.+..|||.+|+|+.|.++||++.+..
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 235678999999999999999999988753
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.04 E-value=7e-10 Score=90.40 Aligned_cols=90 Identities=22% Similarity=0.185 Sum_probs=58.3
Q ss_pred hcccCCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHh---cC
Q psy15004 5 IANYETPHGFIIVYSTID----LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATA---YD 75 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~----~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~---~~ 75 (167)
..++..+|++|+|+|+++ +.+++.+..| ... ...|+|+|+||+|+.+.... ..++...++.. .+
T Consensus 99 ~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (408)
T 1s0u_A 99 LSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAEN 171 (408)
T ss_dssp HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTT
T ss_pred HHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCC
Confidence 345567799999999984 5566655433 212 12479999999999764332 23455556554 25
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++++++||++|.|++++++.|...+.
T Consensus 172 ~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 172 APIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CCEEEC------CHHHHHHHHHHHSC
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999999987664
No 155
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=3.5e-10 Score=91.23 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=65.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHH----HHHHHhcCC--
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG----KDMATAYDC-- 76 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~----~~~~~~~~~-- 76 (167)
....|++.++++|+|+|++++.+ .|..++.+. ..+.|+++|+||+||.+.. +..+.. ..++...|+
T Consensus 64 ~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 64 MLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHHHcCCCc
Confidence 34567788999999999999763 355555443 2378999999999997532 222223 333556676
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 77 -KFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 77 -~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.++.+||++|.|++++++.+.+..
T Consensus 136 ~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 136 VDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 789999999999999999887654
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.95 E-value=1.7e-10 Score=94.80 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=63.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC---CCCCc-eEEEEEecCCCCCcc------ccChhHHHHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD---SIRSK-AVILVANKTDLVRCR------VVTDEDGKDMAT 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~---~~~~~-piilvgNK~Dl~~~~------~v~~~~~~~~~~ 72 (167)
++..|+..+|++|+|||+++ .+|+.+..|..+..++. ...++ |+|+|+||+|+.+.. ....++...++.
T Consensus 100 ~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~ 178 (435)
T 1jny_A 100 NMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMR 178 (435)
T ss_dssp HHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHH
Confidence 45678999999999999998 78886554433322210 00133 689999999997521 112345666666
Q ss_pred hcC-----CeEEEEecCCCCCHHHHHH
Q psy15004 73 AYD-----CKFIETSVGINHNVDELLV 94 (167)
Q Consensus 73 ~~~-----~~~~e~SA~~~~~v~~lf~ 94 (167)
.++ ++++++||++|.|+.++++
T Consensus 179 ~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 179 SYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HcCCCcCCceEEEeecccCcccccccc
Confidence 665 6799999999999987664
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.95 E-value=6.5e-09 Score=88.56 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=64.5
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC------------hh--
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT------------DE-- 65 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~------------~~-- 65 (167)
+...+++.+|++|+|||+++ +.+++.+.. +.. .++|+|+|+||+|+....... .+
T Consensus 86 ~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 86 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 45677889999999999999 777775442 222 368999999999996421100 00
Q ss_pred ---------HH-HHHHHh--------------cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 66 ---------DG-KDMATA--------------YDCKFIETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 66 ---------~~-~~~~~~--------------~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
+. ..+... ..++++++||++|.|++++++.|...+...
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 00 111111 113799999999999999999999877643
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.94 E-value=1.3e-09 Score=87.98 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=66.3
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEe-cCCCCCccccCh--hHHHHHHHhcC---C
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVAN-KTDLVRCRVVTD--EDGKDMATAYD---C 76 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgN-K~Dl~~~~~v~~--~~~~~~~~~~~---~ 76 (167)
...+++.+|++|+|+| + ...+....+|+..+... ++|. |+|+| |+|+ +...+.. ++...+...++ +
T Consensus 77 ~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~ 149 (370)
T 2elf_A 77 LITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDW 149 (370)
T ss_dssp HHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTC
T ss_pred HHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCce
Confidence 4556789999999999 4 34455556666665443 5676 88888 9999 5433222 34555555443 6
Q ss_pred eEEE--EecCC---CCCHHHHHHHHHHHHHh
Q psy15004 77 KFIE--TSVGI---NHNVDELLVGILTQIRL 102 (167)
Q Consensus 77 ~~~e--~SA~~---~~~v~~lf~~l~~~i~~ 102 (167)
++++ +||++ +.|++++++.|.+.+..
T Consensus 150 ~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 150 ECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp EEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 8999 99999 99999999999887654
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.93 E-value=1.2e-09 Score=88.77 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=64.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccc---cChhHHHHHHHhcC---
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRV---VTDEDGKDMATAYD--- 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~---v~~~~~~~~~~~~~--- 75 (167)
+...++..+|++|+|+|+++....+..+.| ..+.. .++| +|+|+||+|+.+... ...++...++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 456788999999999999984433333333 34432 2678 789999999974221 12245566676665
Q ss_pred --CeEEEEecCCCCC----------HHHHHHHHHHHHH
Q psy15004 76 --CKFIETSVGINHN----------VDELLVGILTQIR 101 (167)
Q Consensus 76 --~~~~e~SA~~~~~----------v~~lf~~l~~~i~ 101 (167)
++++++||++|.| ++++++.|...+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 7888887776553
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.93 E-value=2.5e-09 Score=87.10 Aligned_cols=90 Identities=21% Similarity=0.162 Sum_probs=63.0
Q ss_pred hcccCCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHHHHHh---cC
Q psy15004 5 IANYETPHGFIIVYSTID----LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKDMATA---YD 75 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~----~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~~~~~---~~ 75 (167)
...+..+|++|+|+|+++ +.+++.+..| .. . ...|+|+|+||+|+.+... ...++...+... .+
T Consensus 101 ~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~---~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 173 (410)
T 1kk1_A 101 LAGASLMDGAILVIAANEPCPRPQTREHLMAL-QI---I---GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAEN 173 (410)
T ss_dssp HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HH---H---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTT
T ss_pred HhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HH---c---CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCC
Confidence 344567799999999984 4566655433 22 2 1247999999999976432 122344455543 35
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++++++||++|.|++++++.|...+.
T Consensus 174 ~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 174 APIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 79999999999999999999887664
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.93 E-value=7.9e-10 Score=91.96 Aligned_cols=87 Identities=13% Similarity=-0.005 Sum_probs=53.4
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHH------HHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhH----HHHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHV------AEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED----GKDMAT 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~------~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~----~~~~~~ 72 (167)
++..|+.++|++|+|+|+++..++.. ....+..+... ...|+|+|+||+|+.+..+...++ ...+..
T Consensus 127 ~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~ 203 (483)
T 3p26_A 127 NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLV 203 (483)
T ss_dssp HHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHH
Confidence 45678999999999999998654422 12122222221 224699999999997633322222 233333
Q ss_pred hc-----CCeEEEEecCCCCCHHHH
Q psy15004 73 AY-----DCKFIETSVGINHNVDEL 92 (167)
Q Consensus 73 ~~-----~~~~~e~SA~~~~~v~~l 92 (167)
.. +++|+++||++|.|++++
T Consensus 204 ~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 204 DIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HcCCCcccceEEEEeeecCCCcccc
Confidence 33 458999999999999853
No 162
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.93 E-value=1.9e-10 Score=89.26 Aligned_cols=95 Identities=9% Similarity=-0.031 Sum_probs=64.5
Q ss_pred hhhcccCCCcEEE-EEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh--cC-CeE
Q psy15004 3 ECIANYETPHGFI-IVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA--YD-CKF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i-~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~--~~-~~~ 78 (167)
++..|++.++++| +|+|.++..+..+...|+..+. ..+.|+++|+||+|+.+......+........ .+ .++
T Consensus 154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 154 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 5667899998777 6999987555444445666652 24689999999999975443222221110001 13 368
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
+++||++|.|++++|+.|.++..
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHHHHH
T ss_pred ECCChhhccccccHHHHHHHHHH
Confidence 89999999999999999987443
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.92 E-value=4.9e-09 Score=88.18 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=40.6
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
..+..|++.+|++|+|+|.++..+++....| ..+.. .++|+++|+||+|+..
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCC
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcc
Confidence 3567899999999999999987677766555 33332 3689999999999864
No 164
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.91 E-value=5.4e-10 Score=94.06 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=65.5
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc-ChhHHHHH---HHhc--C
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV-TDEDGKDM---ATAY--D 75 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v-~~~~~~~~---~~~~--~ 75 (167)
.++..|+..+|++|+|||+++....+....| ..+.. .++|+|+|+||+|+.+.... ...+...+ +..+ .
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~ 141 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGD 141 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSS
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCC
Confidence 3567789999999999999986555544433 33322 36899999999999743211 11111111 1122 2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 76 CKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 76 ~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++++++||++|.|++++|+.|...+.
T Consensus 142 ~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 142 VQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp EEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCchhHHHHHHHhhh
Confidence 48999999999999999999988764
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=7.3e-11 Score=94.93 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=54.5
Q ss_pred EEEEeCCC-HHHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHHhcCCeEEEEecCCCCCHH
Q psy15004 15 IIVYSTID-LASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMATAYDCKFIETSVGINHNVD 90 (167)
Q Consensus 15 i~v~d~t~-~~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~~~~~~~~e~SA~~~~~v~ 90 (167)
++||++++ ..++..+. .|+..+ ..++|+|+|+||+|+...+++.. +++..++..++++|+++||+++.+ +
T Consensus 148 ~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~ 221 (361)
T 2qag_A 148 CCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-D 221 (361)
T ss_dssp EEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred EEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence 47777765 45666554 455544 24789999999999987665544 466777777899999999999999 9
Q ss_pred HHHHHHHHHHHhhhC
Q psy15004 91 ELLVGILTQIRLKLD 105 (167)
Q Consensus 91 ~lf~~l~~~i~~~~~ 105 (167)
+.|..+.+.+.....
T Consensus 222 e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 222 EDFKEQTRLLKASIP 236 (361)
T ss_dssp --CHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHhcCC
Confidence 999999999887543
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.91 E-value=8.2e-10 Score=89.88 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=57.7
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCcccc---ChhHHHHHHHhcC---
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVV---TDEDGKDMATAYD--- 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v---~~~~~~~~~~~~~--- 75 (167)
++..++..+|++|+|+|+++.... ....|+..+... ++| +|+|+||+|+.+.... ..++...++..++
T Consensus 91 ~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 91 NMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp HHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 456788999999999999885433 345566655433 678 8999999999742221 1234555666655
Q ss_pred --CeEEEEecCCCCC
Q psy15004 76 --CKFIETSVGINHN 88 (167)
Q Consensus 76 --~~~~e~SA~~~~~ 88 (167)
++++++||++|.|
T Consensus 166 ~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 166 DEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCEEECCHHHHHH
T ss_pred cCCCEEEccHHHhhh
Confidence 6899999999987
No 167
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.87 E-value=2.9e-09 Score=82.84 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=66.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFH--VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~--~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
....+++.+|++|+|+|+.++.++. .+..|+ .+.|+++|+||+||.+... .+....+....+++++.
T Consensus 16 ~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~ 84 (282)
T 1puj_A 16 EVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLS 84 (282)
T ss_dssp HHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEE
Confidence 3456788999999999999987765 334332 3689999999999975321 11223334455789999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15004 81 TSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 81 ~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+||+++.|++++++.+.+.+..
T Consensus 85 iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 85 INSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988877654
No 168
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.87 E-value=1.8e-09 Score=82.45 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=61.1
Q ss_pred cccCCCcEEEEEEeCCCHHH-HHHHHHHHHHHHhhCCCCCceEEEEE-ecCCCCCccccCh-------hHHHHHHHhcCC
Q psy15004 6 ANYETPHGFIIVYSTIDLAS-FHVAEQCLQALWKKDSIRSKAVILVA-NKTDLVRCRVVTD-------EDGKDMATAYDC 76 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s-~~~~~~~~~~l~~~~~~~~~piilvg-NK~Dl~~~~~v~~-------~~~~~~~~~~~~ 76 (167)
.+++++|++|+|||+++... ...+..|+.++... ....|+|+|. ||+|+... .+.. .++..++...+.
T Consensus 101 ~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTT
T ss_pred hcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCC
Confidence 47899999999999986222 22233444444211 1123555555 59999743 2221 234446665553
Q ss_pred e---E--EEEecCCCCCHHHHHHHHHHHHHhh
Q psy15004 77 K---F--IETSVGINHNVDELLVGILTQIRLK 103 (167)
Q Consensus 77 ~---~--~e~SA~~~~~v~~lf~~l~~~i~~~ 103 (167)
. + +++||+++.|++++|..|.+.+...
T Consensus 178 ~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 178 RICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 2 3 7899999999999999999988764
No 169
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.86 E-value=1.3e-09 Score=89.50 Aligned_cols=88 Identities=15% Similarity=-0.018 Sum_probs=61.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCc-eEEEEEecCCCCCcc-c-c--ChhHHHHHHHhcC--
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSK-AVILVANKTDLVRCR-V-V--TDEDGKDMATAYD-- 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~-piilvgNK~Dl~~~~-~-v--~~~~~~~~~~~~~-- 75 (167)
+...|+..+|++|+|+|+++.... ....|+..+... ++ |+|+|+||+|+.+.. . + ..++...+++.++
T Consensus 120 ~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~----~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~ 194 (434)
T 1zun_B 120 NMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL----GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFK 194 (434)
T ss_dssp HHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT----TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 345678999999999999885322 233444444332 33 699999999997521 1 1 2345566677777
Q ss_pred ---CeEEEEecCCCCCHHHHHHH
Q psy15004 76 ---CKFIETSVGINHNVDELLVG 95 (167)
Q Consensus 76 ---~~~~e~SA~~~~~v~~lf~~ 95 (167)
++++++||++|.|++++|..
T Consensus 195 ~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 195 PTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp CSEEEEEECCTTTCTTTSSCCTT
T ss_pred ccCceEEEEeccCCCCccccccc
Confidence 68999999999999986543
No 170
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.85 E-value=7.7e-09 Score=84.60 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=72.0
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGIN 86 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~ 86 (167)
++.++.+|+|+|++ ..+++++..|..++..... ....|.|+|+||+|+... . ..++........+++++++||+++
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCc
Confidence 34699999999998 6678888778777654311 125789999999998753 2 223344455556789999999999
Q ss_pred CCHHHHHHHHHHHHHhhhC
Q psy15004 87 HNVDELLVGILTQIRLKLD 105 (167)
Q Consensus 87 ~~v~~lf~~l~~~i~~~~~ 105 (167)
.|++++++.|.+.+.....
T Consensus 310 ~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 310 AGLPALKEALHALVRSTPP 328 (416)
T ss_dssp TTHHHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHHhccc
Confidence 9999999999999876543
No 171
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.83 E-value=6.7e-09 Score=85.47 Aligned_cols=88 Identities=15% Similarity=0.023 Sum_probs=57.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHH---HH---HHHHHHHHHHhhCCCCCce-EEEEEecCCCCCc------cccChhHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLAS---FH---VAEQCLQALWKKDSIRSKA-VILVANKTDLVRC------RVVTDEDGKD 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~------~~v~~~~~~~ 69 (167)
++..++..||++|+|+|+++... |+ ...+.+..+.. .++| +|+|+||+|+... .....++...
T Consensus 111 ~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~ 186 (439)
T 3j2k_7 111 NMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP 186 (439)
T ss_pred HHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHH
Confidence 45678899999999999987421 22 11222222222 2466 9999999998531 1111233444
Q ss_pred HHHhcC------CeEEEEecCCCCCHHHHHH
Q psy15004 70 MATAYD------CKFIETSVGINHNVDELLV 94 (167)
Q Consensus 70 ~~~~~~------~~~~e~SA~~~~~v~~lf~ 94 (167)
++..++ ++++++||++|.|++++++
T Consensus 187 ~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 187 FLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 555544 4799999999999999766
No 172
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.81 E-value=3e-09 Score=78.87 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=58.8
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhc--CCeEEEEecCCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIETSVGIN 86 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SA~~~ 86 (167)
..++.+|+|+|+++... ....+...+ +.|+++|+||+|+.+......++....+... +++++++||++|
T Consensus 128 ~~~~~~i~vvd~~~~~~--~~~~~~~~~-------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g 198 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDD--VVEKHPEIF-------RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTG 198 (221)
T ss_dssp CSCSEEEEEEEGGGCTT--HHHHCHHHH-------HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTT
T ss_pred cccCcEEEEEeCCCcch--hhhhhhhhh-------hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCC
Confidence 46788999999876432 111122211 4689999999998643323445555555544 468999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy15004 87 HNVDELLVGILTQIRL 102 (167)
Q Consensus 87 ~~v~~lf~~l~~~i~~ 102 (167)
.|++++|+.|.+.+..
T Consensus 199 ~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 199 KGFEEWIDFLRGILNV 214 (221)
T ss_dssp BTHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.80 E-value=6.2e-10 Score=92.32 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=56.6
Q ss_pred hhhcccCCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCcc------ccChhHHHHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDL---ASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCR------VVTDEDGKDMAT 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~---~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~------~v~~~~~~~~~~ 72 (167)
+...++..+|++|+|+|+++. .+|+...+|.+.+... ...++| +|+|+||+|+.... ....++...++.
T Consensus 137 ~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~ 215 (467)
T 1r5b_A 137 NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLR 215 (467)
T ss_dssp -----TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHH
Confidence 456678999999999999985 3444322333222211 113577 99999999995311 111234555665
Q ss_pred hc-------CCeEEEEecCCCCCHHHHHH
Q psy15004 73 AY-------DCKFIETSVGINHNVDELLV 94 (167)
Q Consensus 73 ~~-------~~~~~e~SA~~~~~v~~lf~ 94 (167)
.. +++++++||++|.|++++|+
T Consensus 216 ~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 216 RVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HhcCCCccCCceEEecccccccccccccc
Confidence 55 35799999999999998763
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.80 E-value=2.6e-09 Score=88.21 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=58.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 81 (167)
.+..|+++||++|+|+|.++..+ ....|+.++... .++|+++|+||+|+.+... ....+. ..++ .++++
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~i 164 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPI 164 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEEEC
T ss_pred HHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEe
Confidence 56788999999999999876332 333444444332 4789999999999864321 111111 2333 56799
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i~ 101 (167)
||++|.|++++++.+.+.+.
T Consensus 165 SA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGG
T ss_pred ecccccchHHHHHHHHhhcc
Confidence 99999999999999987664
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.79 E-value=1.8e-09 Score=90.26 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=60.4
Q ss_pred hhhcccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc--cccChh--HHHHHHHhcC
Q psy15004 3 ECIANYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC--RVVTDE--DGKDMATAYD 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~--~~v~~~--~~~~~~~~~~ 75 (167)
+...++..+|++|+|||+++ +.+++.+ ..+.. .++|+|+|+||+|+.+. ..+..+ +...++..++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~ 138 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWG 138 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhC
Confidence 45567889999999999988 4444432 22322 36899999999999642 112111 0011223333
Q ss_pred --CeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 76 --CKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 76 --~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
++++++||++|.|++++|+.|+..
T Consensus 139 ~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 139 GESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp SSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred CCccEEEEeeeeccCcchhhhhhhhh
Confidence 689999999999999999998753
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.78 E-value=7.4e-09 Score=93.44 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=65.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCcccc---ChhHHHHHHHhcC---
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVV---TDEDGKDMATAYD--- 75 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v---~~~~~~~~~~~~~--- 75 (167)
++..++..+|++|+|+|+++....+ ..+|+..+... ++| +|+|+||+|+.+.... ..++...++..++
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l----gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV----GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH----TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc----CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 4567889999999999998853333 33455555433 577 7999999999753221 2245566666665
Q ss_pred --CeEEEEecCCC--------CCHHHHHHHHHHHH
Q psy15004 76 --CKFIETSVGIN--------HNVDELLVGILTQI 100 (167)
Q Consensus 76 --~~~~e~SA~~~--------~~v~~lf~~l~~~i 100 (167)
++++++||++| .|++++|+.|...+
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 58999999999 46778877776644
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.77 E-value=7.8e-09 Score=89.54 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=69.0
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhH----------HHH---
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED----------GKD--- 69 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~----------~~~--- 69 (167)
.+..|+++||++|+|+|.++..++.+...|...+.. .+.|+++|+||+|+.....++.++ ...
T Consensus 193 ~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~ 268 (695)
T 2j69_A 193 LSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFN 268 (695)
T ss_dssp HHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHH
Confidence 567899999999999999988888777666555522 257899999999986543222211 111
Q ss_pred --HHHh--------cCCeEEEEecC--------------CCCCHHHHHHHHHHHHHh
Q psy15004 70 --MATA--------YDCKFIETSVG--------------INHNVDELLVGILTQIRL 102 (167)
Q Consensus 70 --~~~~--------~~~~~~e~SA~--------------~~~~v~~lf~~l~~~i~~ 102 (167)
+... .+.+++++||+ ++.|+++++..|.+.+..
T Consensus 269 ~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 269 ANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 12368999999 999999999999887754
No 178
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.73 E-value=4.4e-09 Score=89.87 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=55.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC----hhHHHHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLA---SFH---VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT----DEDGKDMAT 72 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~---s~~---~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~----~~~~~~~~~ 72 (167)
++..+++++|++|+|+|+++.. +|+ .....+..+.. ..-.|+|+|+||+|+.+..... .++...+..
T Consensus 261 ~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~ 337 (611)
T 3izq_1 261 NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLV 337 (611)
T ss_dssp HHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence 4667899999999999998732 111 11112222221 1224699999999997632221 223333444
Q ss_pred hcC-----CeEEEEecCCCCCHHHHH
Q psy15004 73 AYD-----CKFIETSVGINHNVDELL 93 (167)
Q Consensus 73 ~~~-----~~~~e~SA~~~~~v~~lf 93 (167)
..+ ++|+++||++|.||+++.
T Consensus 338 ~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 338 DIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred hhcccccCccEEeeecccCCCccccC
Confidence 443 589999999999999773
No 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.73 E-value=8.5e-09 Score=74.59 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=45.7
Q ss_pred hhcccCC----CcEEEEEEeCC-CHHHHHHHHHHHHHHHhhC---CCCCceEEEEEecCCCCCccc
Q psy15004 4 CIANYET----PHGFIIVYSTI-DLASFHVAEQCLQALWKKD---SIRSKAVILVANKTDLVRCRV 61 (167)
Q Consensus 4 ~~~y~~~----ad~~i~v~d~t-~~~s~~~~~~~~~~l~~~~---~~~~~piilvgNK~Dl~~~~~ 61 (167)
...|+.+ +|++|+|||++ ++.+|+.+..|+..+.... ...++|+++|+||+|+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 108 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 3455555 89999999999 8999999988988775432 225789999999999976544
No 180
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.72 E-value=5.2e-08 Score=73.36 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=61.0
Q ss_pred hcccCCCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC------hhHHHHHHHhcCC
Q psy15004 5 IANYETPHGFIIVYSTIDLAS--FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT------DEDGKDMATAYDC 76 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s--~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~------~~~~~~~~~~~~~ 76 (167)
..+++++|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+....++..++.
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~---~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER---ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH---HGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh---ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 456788999999999876433 22222222222111 245999999999987654443 2456778888888
Q ss_pred eEEEEecCCC-----CCHHHHHHHHHHHHHh
Q psy15004 77 KFIETSVGIN-----HNVDELLVGILTQIRL 102 (167)
Q Consensus 77 ~~~e~SA~~~-----~~v~~lf~~l~~~i~~ 102 (167)
.|+.+++..+ .+|.++|..+...+..
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8887776643 6888999888776654
No 181
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.71 E-value=7.2e-09 Score=85.72 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=57.2
Q ss_pred hhhcccCCCcEEEEEEeCCCH---HHHH---HHHHHHHHHHhhCCCCCce-EEEEEecCCCCCc-cc---cChhHHHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDL---ASFH---VAEQCLQALWKKDSIRSKA-VILVANKTDLVRC-RV---VTDEDGKDMA 71 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~---~s~~---~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~-~~---v~~~~~~~~~ 71 (167)
+...++..+|++|+|+|+++. .+|+ ....++..+.. .++| +|+|+||+|+.+. .. ...++...++
T Consensus 101 ~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l 176 (458)
T 1f60_A 101 NMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFI 176 (458)
T ss_dssp HHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHH
Confidence 456788999999999999875 2342 22223333322 2455 9999999999731 11 1223455566
Q ss_pred HhcC-----CeEEEEecCCCCCHHHH
Q psy15004 72 TAYD-----CKFIETSVGINHNVDEL 92 (167)
Q Consensus 72 ~~~~-----~~~~e~SA~~~~~v~~l 92 (167)
..++ ++|+++||++|.|++++
T Consensus 177 ~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 177 KKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHcCCCccCceEEEeecccCcCcccc
Confidence 6555 58999999999999755
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.68 E-value=5.1e-08 Score=71.45 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=61.6
Q ss_pred CCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhCCCCCceEEEEEecCCCCCccc--cChhHHHHHHHhcC--CeEEEEe
Q psy15004 9 ETPHGFIIVYSTIDLASFHV--AEQCLQALWKKDSIRSKAVILVANKTDLVRCRV--VTDEDGKDMATAYD--CKFIETS 82 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~--~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~--v~~~~~~~~~~~~~--~~~~e~S 82 (167)
..++++++|+|+++..++.. +..|+.. .++|+++|+||+|+....+ ...+.+..++...+ +.++++|
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~S 179 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS 179 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECB
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence 57899999999988655532 3334321 2689999999999865321 12244555555554 5789999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILTQIR 101 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~~i~ 101 (167)
|+++.|++++++.|.+.+.
T Consensus 180 al~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 180 SLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp TTTTBSHHHHHHHHHHHHC
T ss_pred ecCCCCHHHHHHHHHHHHh
Confidence 9999999999999887653
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.67 E-value=3.6e-08 Score=85.05 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=37.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..|++.+|++|+|+|.++....+. ..++..+... ++|+|+|+||+|+.
T Consensus 90 ~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 90 EIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL----GLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred HHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc----cCCEEEEecCCchh
Confidence 45678899999999999987544333 3455555432 68999999999986
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=6.4e-09 Score=85.14 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=54.8
Q ss_pred hhcccCCCcEEEEEEeCCCH-HHHHHHH-HHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHHhcCCeEE
Q psy15004 4 CIANYETPHGFIIVYSTIDL-ASFHVAE-QCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMATAYDCKFI 79 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~-~s~~~~~-~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~~~~~~~~ 79 (167)
++.++.++++.+++|+++.. .+|+.+. .|+..+. .++|+|+|+||+|+...+++.. +++..++..++++++
T Consensus 130 aRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~ 204 (418)
T 2qag_C 130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY 204 (418)
T ss_dssp CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEE
Confidence 45678888877777776653 3565553 5777772 2689999999999987666554 567777888899999
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++||+++.+++++|..+...+.
T Consensus 205 ~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 205 EFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp CCC-----------------CC
T ss_pred eCCCCCCcCHHHHHHHHHhhCC
Confidence 9999999999998888776553
No 185
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.64 E-value=1.3e-09 Score=81.06 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=46.0
Q ss_pred ceEEEEEecCCCCCccccChhHHHHHHHhc--CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 45 KAVILVANKTDLVRCRVVTDEDGKDMATAY--DCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 45 ~piilvgNK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.|.++|+||+|+.+.+.+..++...++..+ +++++++||++|.|++++|+.|.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 467999999998654334556666666654 5799999999999999999999887754
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.61 E-value=8e-09 Score=82.69 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=65.9
Q ss_pred hhhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 2 EECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 2 ~~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.++..|++++|++|+|+|.++.+... ..|+..+... ...+.|+|+|+||+|+.+......+....+...++.+|+++
T Consensus 164 ~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 164 NMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 35778999999999999876543332 2344333332 23467999999999997655444444444444567899999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15004 82 SVGINHNVDELLVGILTQI 100 (167)
Q Consensus 82 SA~~~~~v~~lf~~l~~~i 100 (167)
|+..+.++++.+..+....
T Consensus 241 ~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARK 259 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHH
T ss_pred EECChHHhccCCCHHHHHH
Confidence 9999999988766554443
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.57 E-value=1.6e-08 Score=80.90 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=58.1
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH----------hcCCe
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT----------AYDCK 77 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~----------~~~~~ 77 (167)
+..+|++|+|+|.+..+.++.+.. .....|+++|+||+|+....... .....+.. .++.+
T Consensus 190 ~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~ 259 (355)
T 3p32_A 190 ANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHHKEAR-LAARELSAAIRLIYPREALWRPP 259 (355)
T ss_dssp HTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGHHHHH-HHHHHHHHHHHHHSTTCCSCCCC
T ss_pred HHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcChhHHH-HHHHHHHHHHhhccccccCCCCc
Confidence 478999999999876544332211 11246999999999986432211 11122222 12568
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 78 FIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++++||++|.|++++++.|.+.+..
T Consensus 260 vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 260 VLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.51 E-value=5e-08 Score=76.45 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCceEEEEEecCCCCCcccc--ChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy15004 43 RSKAVILVANKTDLVRCRVV--TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~~~ 104 (167)
..+|+++|+||.|+...+++ ..+++..++..++++|+++||+++ |++++|..+.+.+....
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 36799999999999765443 346778888899999999999999 99999999999987543
No 189
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.51 E-value=3.7e-07 Score=69.40 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=62.0
Q ss_pred cCCCcEEEEEEeCCCHHHH-HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc---c---ChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV---V---TDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~-~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~---v---~~~~~~~~~~~~~~~~~e 80 (167)
++++|++|+|+|+++.... ..+..|+.++... ...+.|+|||+||+|+.+... + ..+..+.+...++..|+.
T Consensus 103 ~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~ 181 (247)
T 3lxw_A 103 APGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCA 181 (247)
T ss_dssp TTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEE
Confidence 3899999999999863211 2223344443211 123689999999999965321 1 113456677777877766
Q ss_pred EecCC-----CCCHHHHHHHHHHHHHhh
Q psy15004 81 TSVGI-----NHNVDELLVGILTQIRLK 103 (167)
Q Consensus 81 ~SA~~-----~~~v~~lf~~l~~~i~~~ 103 (167)
.++.. +.||+++++.+.+.+...
T Consensus 182 ~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 182 FDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 66554 579999999888877653
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.49 E-value=1.2e-07 Score=74.07 Aligned_cols=96 Identities=16% Similarity=0.041 Sum_probs=58.2
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHH-HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~-~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
++..|++++|++|+|+|.++.... .....+...+. ..+.|+++|+||+|+.+......+........++..|+++
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 235 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGV 235 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEEC
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEE
Confidence 456789999999999998543211 11123444442 2468999999999997543311111111001123567776
Q ss_pred ecCC------CCCHHHHHHHHHHHHHh
Q psy15004 82 SVGI------NHNVDELLVGILTQIRL 102 (167)
Q Consensus 82 SA~~------~~~v~~lf~~l~~~i~~ 102 (167)
|+.. +.|++++++.+...+..
T Consensus 236 ~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 236 INRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 6554 67888888887776653
No 191
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.49 E-value=4e-08 Score=75.72 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=49.2
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHHhcCCeEEEEecCCCCC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMATAYDCKFIETSVGINHN 88 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~~~~~~~~e~SA~~~~~ 88 (167)
+|++|++++.+.......-..++..+.. ++|+|+|+||+|+....++.. +.........+++++++||+++.|
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~ 190 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE 190 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChh
Confidence 7899999987653222222445566522 689999999999865433221 233444556788999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy15004 89 VDELLVGILTQIR 101 (167)
Q Consensus 89 v~~lf~~l~~~i~ 101 (167)
++++++.|...+.
T Consensus 191 ~~~l~~~l~~~~p 203 (274)
T 3t5d_A 191 ENKLVKKIKDRLP 203 (274)
T ss_dssp ----CHHHHHTCS
T ss_pred HHHHHHHHhcCCC
Confidence 9999988877553
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.47 E-value=2e-07 Score=70.69 Aligned_cols=92 Identities=12% Similarity=0.005 Sum_probs=56.3
Q ss_pred ccCCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--h---HHH----H-----
Q psy15004 7 NYETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--E---DGK----D----- 69 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~---~~~----~----- 69 (167)
++.+ +++|+|+|.+. +..+.....+....... .++|+++|+||+|+.....+.. + +.. .
T Consensus 135 ~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 210 (262)
T 1yrb_A 135 NLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDP 210 (262)
T ss_dssp TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccc
Confidence 4566 88888888753 33333222222111111 2579999999999875432110 0 000 0
Q ss_pred ------------HHHhcC--CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 70 ------------MATAYD--CKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 70 ------------~~~~~~--~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
++..++ ++++++||+++.|+++++++|.+.+..
T Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 211 SMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 123333 489999999999999999999887754
No 193
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.46 E-value=7.2e-08 Score=74.20 Aligned_cols=84 Identities=10% Similarity=-0.037 Sum_probs=59.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.....+.++|++|+|+|+.++.+..+.. ++ + . ++|.++|.||+||.+... .+....+....|+++ .+|
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iS 81 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITT 81 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EEC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEE
Confidence 4556788999999999999887654310 11 1 1 689999999999975321 112233344557888 999
Q ss_pred cCCCCCHHHHHHHHHH
Q psy15004 83 VGINHNVDELLVGILT 98 (167)
Q Consensus 83 A~~~~~v~~lf~~l~~ 98 (167)
|+++.|+++++..+..
T Consensus 82 a~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 82 HKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CTTSCHHHHHHHHCCC
T ss_pred CCCCcCHHHHHHHHHH
Confidence 9999999998876644
No 194
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.42 E-value=4.9e-08 Score=83.14 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=45.5
Q ss_pred hhhcccCCCcEEEEEEeCCCHH---HH--H-HHHHHHHHHHhhCCCCCce-EEEEEecCCCCCcc-cc---ChhHHHHHH
Q psy15004 3 ECIANYETPHGFIIVYSTIDLA---SF--H-VAEQCLQALWKKDSIRSKA-VILVANKTDLVRCR-VV---TDEDGKDMA 71 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~---s~--~-~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~-~v---~~~~~~~~~ 71 (167)
++..++..+|++|+|+|+++.. +| . .....+..+... ++| +|+|+||+|+.+.. .. ...+...+.
T Consensus 271 ~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l 346 (592)
T 3mca_A 271 GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFL 346 (592)
T ss_dssp ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS----SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc----CCCeEEEEEeccccccccHHHHHHHHHHHHHHH
Confidence 3456789999999999998531 11 0 111122222222 455 99999999997521 11 112333444
Q ss_pred -HhcCC-----eEEEEecCCCCCHH
Q psy15004 72 -TAYDC-----KFIETSVGINHNVD 90 (167)
Q Consensus 72 -~~~~~-----~~~e~SA~~~~~v~ 90 (167)
...++ +|+++||++|.||+
T Consensus 347 ~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 347 IKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHhhCCCccceEEEEEecccCcccc
Confidence 44454 79999999999998
No 195
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.41 E-value=1.4e-07 Score=74.26 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=59.0
Q ss_pred hcccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCcccc--ChhHHHHHHHhcCCeEEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVV--TDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~~~~~e~ 81 (167)
+....++|.+++|+|+.++. +...+..++..... .++|.++|.||+||.+.... ..+.........|++++.+
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 156 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 156 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence 34567999999999998764 34445555544422 37899999999999764320 0122233334568899999
Q ss_pred ecCCCCCHHHHHHH
Q psy15004 82 SVGINHNVDELLVG 95 (167)
Q Consensus 82 SA~~~~~v~~lf~~ 95 (167)
||.++.|+++++..
T Consensus 157 sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 157 SSKDQDSLADIIPH 170 (307)
T ss_dssp CHHHHTTCTTTGGG
T ss_pred ecCCCCCHHHHHhh
Confidence 99999888776643
No 196
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.38 E-value=7.6e-07 Score=77.08 Aligned_cols=51 Identities=22% Similarity=0.111 Sum_probs=40.8
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
.+..+++.+|++|+|+|.++..+++....|.. +.. .++|+++|+||+|+..
T Consensus 93 ~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 93 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred HHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 45678899999999999999877777666654 333 2789999999999864
No 197
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.34 E-value=1.6e-06 Score=72.90 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=36.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
.+..|++.+|++|+|+|.++...... ..++..+ ...++|+++|+||+|+..
T Consensus 98 ~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~----~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 98 DTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT----RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp HHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH----TTTTCCEEEEEECTTSCC
T ss_pred HHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH----HHcCCCEEEEEcCcCCcc
Confidence 46678999999999999987532221 2233333 224789999999999864
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.31 E-value=6.5e-07 Score=71.20 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=53.1
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHHh-------cCCe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMATA-------YDCK 77 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~~-------~~~~ 77 (167)
+.+.+|++|+|+|.+..+.++.+.. .. .++|.++|+||+|+.+...+.. ++....... +..+
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR 236 (341)
T ss_dssp HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCc
Confidence 4578999999999876533221111 11 1458899999999865322211 111111111 1357
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++++||++|.|++++++.|...+.
T Consensus 237 vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 237 VLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998765
No 199
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=2.6e-07 Score=75.08 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=32.8
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHH
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLV 94 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~ 94 (167)
.+|+|+|+||+|+.. .. ..+.........+.+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~-~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-DE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC-HH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc-hH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 489999999999862 11 11122222222367899999999999887644
No 200
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.20 E-value=1.1e-07 Score=76.04 Aligned_cols=93 Identities=10% Similarity=-0.019 Sum_probs=55.3
Q ss_pred hhhcccCCCcEEEE-EEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHH--HHHHhcCC-eE
Q psy15004 3 ECIANYETPHGFII-VYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGK--DMATAYDC-KF 78 (167)
Q Consensus 3 ~~~~y~~~ad~~i~-v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~--~~~~~~~~-~~ 78 (167)
++..|+.+++.+|+ |.|.+....-.....++..+. ..+.|+++|+||+|+.+......+... .+....++ .+
T Consensus 159 ~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v 234 (353)
T 2x2e_A 159 MLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence 56678877766655 455443211112223444442 247899999999999754321111111 01111233 57
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy15004 79 IETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 79 ~e~SA~~~~~v~~lf~~l~~~ 99 (167)
+++||+++.|++++|+.+..+
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHHH
T ss_pred EeCCcccccccccHHHHHHHH
Confidence 889999999999999998873
No 201
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.20 E-value=5.3e-06 Score=66.52 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=56.3
Q ss_pred ccCCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccC-hhHHHHHHHhcCCeEEEEecC
Q psy15004 7 NYETPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT-DEDGKDMATAYDCKFIETSVG 84 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~~~~~~~~~~~e~SA~ 84 (167)
...++|.+++|.+.. |. +...+..|+-..... ++|++||.||+||.+..... .+.........|++++.+||.
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~----~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL----QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH----TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc----CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 357899999997764 44 444456665444333 67889999999997543200 011122233568899999999
Q ss_pred CCCCHHHHHHH
Q psy15004 85 INHNVDELLVG 95 (167)
Q Consensus 85 ~~~~v~~lf~~ 95 (167)
++.|++++...
T Consensus 202 ~~~gl~~L~~~ 212 (358)
T 2rcn_A 202 TQDGLKPLEEA 212 (358)
T ss_dssp TTBTHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 99999988654
No 202
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.20 E-value=6.1e-06 Score=71.61 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=38.6
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
.+..+++.+|++|+|+|+++...++....|. .+.. .++|+++|+||+|+..
T Consensus 98 ~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 98 EVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence 4567889999999999999876665555453 3322 3689999999999854
No 203
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.20 E-value=5e-06 Score=72.00 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=40.1
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVR 58 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~ 58 (167)
.+..+++.+|++|+|+|.++..+++....|.. +... ++|+++|+||+|+..
T Consensus 91 ~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~----~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 91 EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY----GVPRIVFVNKMDKLG 141 (693)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT----TCCEEEEEECTTSTT
T ss_pred HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc----CCCEEEEEECCCccc
Confidence 45678899999999999998777776665543 4332 689999999999864
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.15 E-value=4e-06 Score=66.93 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=51.9
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHH----------hcCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMAT----------AYDC 76 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~----------~~~~ 76 (167)
+.+.+|++++|+|.+.....+.+.. .+ -..|.++|+||+|+.+.... ......+.. .++.
T Consensus 184 l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~ 253 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKP 253 (349)
T ss_dssp HHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCC
T ss_pred HHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCc
Confidence 4578999999999986543322211 12 14578999999998532110 001111211 1245
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 77 KFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 77 ~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
+++.+||++|.|++++++.|.+.+..
T Consensus 254 ~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 254 KVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999887643
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.92 E-value=1.8e-05 Score=62.78 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=51.5
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHh----------cCCe
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATA----------YDCK 77 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~----------~~~~ 77 (167)
...+|.+++|+|.+..+..+.+..++. .+|.++|.||+|+...........+.+... +..+
T Consensus 166 ~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~ 236 (337)
T 2qm8_A 166 ADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP 236 (337)
T ss_dssp HTTSSEEEEEECSCC------CCTTHH---------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCC
T ss_pred HhhCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCC
Confidence 468999999999865432221111111 235677779999754222222222233221 2357
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 78 FIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 78 ~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
++.+||+++.|++++++.|.+...
T Consensus 237 vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 237 VVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999988654
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.86 E-value=2.7e-06 Score=74.25 Aligned_cols=92 Identities=9% Similarity=-0.030 Sum_probs=58.7
Q ss_pred hhccc-CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHH--HHHhcCC-eEE
Q psy15004 4 CIANY-ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD--MATAYDC-KFI 79 (167)
Q Consensus 4 ~~~y~-~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~--~~~~~~~-~~~ 79 (167)
...|+ ..+|++|+|.|.+....-++...++..+. ..+.|+|+|.||+|+.+........... +....++ +++
T Consensus 180 v~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV 255 (772)
T 3zvr_A 180 LMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 255 (772)
T ss_dssp HHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECC
T ss_pred HHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceE
Confidence 34555 57899999999986433233333555553 2368999999999997543321111110 0001232 567
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q psy15004 80 ETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 80 e~SA~~~~~v~~lf~~l~~~ 99 (167)
.+||++|.|++++++.+.+.
T Consensus 256 ~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 256 NRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CCCCEESSSSEEHHHHHHHH
T ss_pred EecccccccchhHHHHHHHH
Confidence 89999999999999988874
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.74 E-value=4e-05 Score=61.62 Aligned_cols=54 Identities=20% Similarity=0.095 Sum_probs=39.3
Q ss_pred CceEEEEEecCCC--CCc-cccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHH
Q psy15004 44 SKAVILVANKTDL--VRC-RVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGIL 97 (167)
Q Consensus 44 ~~piilvgNK~Dl--~~~-~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~ 97 (167)
..|+++|+||.|. .+. .....+....+++..+++++++||++..++.+++..-.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~ 257 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEA 257 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHH
Confidence 4799999999984 221 12334566778888889999999999777776665533
No 208
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.66 E-value=0.00025 Score=56.88 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=31.4
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCC
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~ 85 (167)
...|+++|+|+.|..-......+....++...+++++++||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 3589999999999642122234566777777889999999875
No 209
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.63 E-value=1.3e-05 Score=67.62 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=42.3
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccc
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV 61 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~ 61 (167)
.+..|+..+|++|+|+|+++....+....|+..+.. .+.|+++|+||+|+....+
T Consensus 181 ~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 181 VLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCHHH
T ss_pred HHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCHHH
Confidence 355678899999999999886555666677777633 3579999999999976443
No 210
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.57 E-value=8.7e-05 Score=56.69 Aligned_cols=53 Identities=8% Similarity=-0.105 Sum_probs=36.0
Q ss_pred cCCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCC-CCceEEEEEecCCCCCccc
Q psy15004 8 YETPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSI-RSKAVILVANKTDLVRCRV 61 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~-~~~piilvgNK~Dl~~~~~ 61 (167)
++++|++|+|||++.. +|... ..|+..+...... ...|+++|+||+|+.....
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 4579999999998763 34432 4677777543111 1269999999999975443
No 211
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.44 E-value=0.00052 Score=57.87 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=33.7
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
...++-+|++|+|+|...----+...-| ...... ++|+|++.||+|..
T Consensus 118 ~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~----~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 118 YRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR----ATPVMTFVNKMDRE 165 (548)
T ss_dssp HHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSC
T ss_pred HHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh----CCceEEEEecccch
Confidence 4456779999999999873333333445 333333 78999999999974
No 212
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.41 E-value=9.5e-05 Score=56.27 Aligned_cols=50 Identities=14% Similarity=-0.040 Sum_probs=34.3
Q ss_pred CCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhCCC-CCceEEEEEecCCCCCcc
Q psy15004 10 TPHGFIIVYSTIDLASFHVA-EQCLQALWKKDSI-RSKAVILVANKTDLVRCR 60 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~-~~~~~~l~~~~~~-~~~piilvgNK~Dl~~~~ 60 (167)
++|++|+|+|++... |... ..|+..+...... ...|+++|+||+|+....
T Consensus 116 ~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 116 TIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp EECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred CCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 789999999997654 4333 4577766543211 124999999999996443
No 213
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.30 E-value=0.00013 Score=64.50 Aligned_cols=50 Identities=26% Similarity=0.275 Sum_probs=40.9
Q ss_pred hhhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 3 ECIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 3 ~~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.+..|++.+|++|+|||+++..+++....|.... . .++|+|+|+||+|+.
T Consensus 114 ~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 114 EVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 4677899999999999999988888776665433 2 368999999999985
No 214
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.82 E-value=0.00077 Score=57.81 Aligned_cols=48 Identities=23% Similarity=0.166 Sum_probs=32.6
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
..-++-+|++|+|+|...--.-+....| ...... ++|.|++.||+|..
T Consensus 85 ~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~----~lp~i~~INKmDr~ 132 (638)
T 3j25_A 85 YRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM----GIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH----TCSCEECCEECCSS
T ss_pred HHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc----CCCeEEEEeccccc
Confidence 4456789999999999763222222333 333333 68999999999974
No 215
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.33 E-value=0.019 Score=49.78 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=32.1
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
..++-+|++|+|+|...--.-+...-| .+.++. ++|.|++.||+|..
T Consensus 104 ~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 104 RSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH----TCCEEEEEECSSST
T ss_pred HHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc----CCCeEEEEcccccc
Confidence 445668999999999763222332333 334343 78999999999974
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.31 Score=39.03 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=32.5
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC-CCCCceEEEEEecCCCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD-SIRSKAVILVANKTDLV 57 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~-~~~~~piilvgNK~Dl~ 57 (167)
...+.||++++|.|.+++. .+......++.... .....|.+++.||.|..
T Consensus 145 ~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4567899999999999863 22233333332221 12356888999999964
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.89 E-value=0.13 Score=42.91 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=47.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCCCCccccChhHHHHHHHhcCCeE----------
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDLVRCRVVTDEDGKDMATAYDCKF---------- 78 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~---------- 78 (167)
.+|.+|+|+|.+.... . ......+.. .+|+ ++|.||+|...... .+.......+.++
T Consensus 213 ~pd~vllVvDa~~g~~--~-~~~a~~~~~-----~~~i~gvVlNK~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~ 280 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--C-EAQAKAFKD-----KVDVASVIVTKLDGHAKGG----GALSAVAATKSPIIFIGTGEHID 280 (504)
T ss_dssp CCSEEEEEEETTCCTT--H-HHHHHHHHH-----HHCCCCEEEECTTSCCCCT----HHHHHHHHHCCCEEEEECSSSTT
T ss_pred cCceEEEEEecccccc--H-HHHHHHHHh-----hcCceEEEEeCCccccchH----HHHHHHHHhCCCeEEeccccchh
Confidence 6899999999976422 1 112223321 2564 88999999863211 1222233334332
Q ss_pred --------EEEecCCCCC-HHHHHHHHHHH
Q psy15004 79 --------IETSVGINHN-VDELLVGILTQ 99 (167)
Q Consensus 79 --------~e~SA~~~~~-v~~lf~~l~~~ 99 (167)
+.+|+..|.| ++++++.+.+.
T Consensus 281 dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 281 DFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 3468999998 98888887765
No 218
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.74 E-value=2.6 Score=32.00 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=46.2
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
...+..+|.+|+|.+. +..++..+..+++.+.......+++++ +|.|+++-. .....+.+.++.+++.
T Consensus 174 ~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 174 AAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRLA 242 (307)
T ss_dssp GGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------HHHHHHHHHcCCCcee
Confidence 3456789999999875 466778887777777654333466655 899999831 3445566666766554
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.57 E-value=1.9 Score=35.21 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=36.5
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEec
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 83 (167)
.+|.+++|.|.+.... .......+... -.+..+|.||.|..... -.+.......+.++..++.
T Consensus 212 ~pd~vlLVvDA~~gq~---a~~~a~~f~~~----~~i~gVIlTKlD~~~~g----G~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQ---AYNQALAFKEA----TPIGSIIVTKLDGSAKG----GGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp CCSEEEEEEEGGGGGG---HHHHHHHHHHS----CTTEEEEEECCSSCSSH----HHHHHHHHTTCCCEEEEEC
T ss_pred cCceEEEEEeCCCchh---HHHHHHHHHhh----CCCeEEEEECCCCcccc----cHHHHHHHHHCCCEEEEEc
Confidence 4788999999875322 12222333221 12467889999975321 2233444566788777765
No 220
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.33 E-value=5.2 Score=28.59 Aligned_cols=69 Identities=7% Similarity=-0.001 Sum_probs=43.8
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
...+..+|.+|++...+ ..++..+...++.+.... +.++.+|.|++|-... .. ..+..+..++++.+++
T Consensus 85 ~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~-~~-~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 85 EALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYPS-KD-GDEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTS-CH-HHHHHHHHHHTTCCBC
T ss_pred HHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccc-hH-HHHHHHHHHHcCCchh
Confidence 44566799999999864 567777777777775532 4568899999985420 11 2333444444665544
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=83.18 E-value=1.8 Score=30.39 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=43.1
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-CCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-IRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
...+..+|.+|++...+.. + ..+..+++.+..... ..++++.+|.|++|-.. . ...+..++.+.++.+++
T Consensus 92 ~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 92 SAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-MLNVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EEHHHHHHHHHHTCCBC
T ss_pred HHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HHHHHHHHHHHcCCcee
Confidence 3445668999999987654 4 666666666654321 23567899999999532 1 12344455555665544
No 222
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=78.52 E-value=5.8 Score=31.60 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=36.3
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~ 101 (167)
...|.+++.||+|... .++...+.. .-.++++|+..+.|++.+...+.+.+-
T Consensus 248 ~~~p~i~v~nKid~~~-----~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS-----IEELELLYR--IPNAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp EEECEEEEEECGGGSC-----HHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hccceEEEEecccccC-----HHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHHcC
Confidence 3579999999999643 233322222 125789999999999988877766654
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=78.10 E-value=16 Score=26.10 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=47.3
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+...+..+|.+|+|...+ ..++..+..+++.+... ......+-+|.|++|-... ... ..+.+.++.+++.+
T Consensus 134 ~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~~~--~~~---~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 134 GVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEF-EKPISRIEIILNRADTNSR--ITS---DEIEKVIGRPISKR 204 (245)
T ss_dssp HHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSCTT--SCH---HHHHHHHTSCEEEE
T ss_pred HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-CCCccceEEEEecCCCCCC--CCH---HHHHHHhCCCeEEE
Confidence 344567799999999864 67888888888887654 2224467889999985422 222 34455667777654
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=76.27 E-value=4.5 Score=32.92 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=39.1
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCH
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNV 89 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v 89 (167)
..|.+++|.|.+.-.. +......+... -.+..+|.||.|.... .-.+.......+.|+..++. |+++
T Consensus 211 ~pd~vlLVlDa~~gq~---a~~~a~~f~~~----~~~~gVIlTKlD~~a~----~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 211 KPDDVILVIDASIGQK---AYDLASRFHQA----SPIGSVIITKMDGTAK----GGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp CCSEEEEEEEGGGGGG---GHHHHHHHHHH----CSSEEEEEECGGGCSC----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred CCcceEEEEeCccchH---HHHHHHHHhcc----cCCcEEEEeccccccc----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence 3688999999875322 22223333222 1357789999997531 22334445566888877776 5444
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=74.23 E-value=2 Score=34.98 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=32.6
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccCh--hHHHHHHHhcCCeEEEEec
Q psy15004 13 GFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD--EDGKDMATAYDCKFIETSV 83 (167)
Q Consensus 13 ~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~~~~~~~~e~SA 83 (167)
+++|+.|....-+-.+ ..++..+ . .++|+|+|.||+|.....++.. .....-....|++++.+|.
T Consensus 151 ~v~fI~d~~~~l~~~D-ieilk~L----~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD-LVTMKKL----D-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHH-HHHHHHT----C-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHH-HHHHHHH----h-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 3556666543322222 2233333 1 4789999999999865433211 1111112235677777774
No 226
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=71.76 E-value=17 Score=23.37 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=40.4
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v 89 (167)
.|++|+=++..+.+.++ ++..++.......+|+|++....|. +... .+...|+ .|+. .....
T Consensus 53 ~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~~--------~~~~-~~~~~g~~~~l~----kp~~~ 115 (147)
T 2zay_A 53 PHLIITEANMPKISGMD----LFNSLKKNPQTASIPVIALSGRATA--------KEEA-QLLDMGFIDFIA----KPVNA 115 (147)
T ss_dssp CSEEEEESCCSSSCHHH----HHHHHHTSTTTTTSCEEEEESSCCH--------HHHH-HHHHHTCSEEEE----SSCCH
T ss_pred CCEEEEcCCCCCCCHHH----HHHHHHcCcccCCCCEEEEeCCCCH--------HHHH-HHHhCCCCEEEe----CCCCH
Confidence 56666666555544444 4555554223457899988876551 1222 2234565 4443 24566
Q ss_pred HHHHHHHHHHHHh
Q psy15004 90 DELLVGILTQIRL 102 (167)
Q Consensus 90 ~~lf~~l~~~i~~ 102 (167)
+++...+...+..
T Consensus 116 ~~L~~~i~~~~~~ 128 (147)
T 2zay_A 116 IRLSARIKRVLKL 128 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6766655554443
No 227
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=71.67 E-value=7.5 Score=31.13 Aligned_cols=42 Identities=21% Similarity=0.129 Sum_probs=28.4
Q ss_pred CceEEEEEecCCCC--CccccChhHHHHHHHhcC--CeEEEEecCC
Q psy15004 44 SKAVILVANKTDLV--RCRVVTDEDGKDMATAYD--CKFIETSVGI 85 (167)
Q Consensus 44 ~~piilvgNK~Dl~--~~~~v~~~~~~~~~~~~~--~~~~e~SA~~ 85 (167)
..|++++.|+.|.. ....-..+....++...+ ..++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 47999999999832 011112345566776665 7899999986
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=70.97 E-value=6.4 Score=30.11 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=42.3
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGIN 86 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~ 86 (167)
...+|.+++|.|.+.. .+.......+.. ..| ..+|.||+|.... ...+..+....+.++..++ +|
T Consensus 210 ~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D~~~~----~g~~~~~~~~~~~pi~~i~--~G 275 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMDGTAK----GGGALSAVAATGATIKFIG--TG 275 (297)
T ss_dssp HHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGGGCTT----HHHHHHHHHTTTCCEEEEE--CS
T ss_pred HhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCCCCcc----hHHHHHHHHHHCcCEEEEe--CC
Confidence 3468999999998642 222222333322 244 6788999996431 2233456667788877766 56
Q ss_pred CCHHHH
Q psy15004 87 HNVDEL 92 (167)
Q Consensus 87 ~~v~~l 92 (167)
++++++
T Consensus 276 e~v~dl 281 (297)
T 1j8m_F 276 EKIDEL 281 (297)
T ss_dssp SSTTCE
T ss_pred CChhhc
Confidence 666553
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=67.91 E-value=11 Score=30.49 Aligned_cols=60 Identities=12% Similarity=-0.021 Sum_probs=34.4
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCc-e-EEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSK-A-VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~-p-iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
.+|.+++|.|.+... +.......+. ..+ | ..+|.||+|.... ...+..+....+.++..+
T Consensus 210 ~~d~vllVvda~~g~---~~~~~~~~~~-----~~~~~i~gvVlnK~D~~~~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQ---QAGIQAKAFK-----EAVGEIGSIIVTKLDGSAK----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp CCSEEEEEEEGGGGG---GHHHHHHHHH-----TTSCSCEEEEEECSSSCST----THHHHHHHHHSSCCEEEE
T ss_pred cCcceeEEeeccccH---HHHHHHHHHh-----hcccCCeEEEEeCCCCccc----hHHHHHHHHHHCCCEEEe
Confidence 689999999986532 1222223331 134 5 8899999997431 112333555566655444
No 230
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=66.94 E-value=34 Score=24.87 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=40.7
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
..+|.+|++...+ ..++..+..+++.+.......+.++ -+|.|+.+-.. ..+....+.+.++.+++
T Consensus 139 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 139 GKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EYELLDAFAKELGSQLI 205 (269)
T ss_dssp TSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CHHHHHHHHHHHTCCEE
T ss_pred hhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch----hHHHHHHHHHHcCCccc
Confidence 4689999998854 5677777666666654322234554 67889987321 23344555566676554
No 231
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=66.26 E-value=15 Score=27.05 Aligned_cols=66 Identities=20% Similarity=0.411 Sum_probs=40.9
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecCCCCC----cc-cc-ChhHHHHHHHhcCCeEEE
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVR----CR-VV-TDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~Dl~~----~~-~v-~~~~~~~~~~~~~~~~~e 80 (167)
.+|.+|+|...+. .+...+...++.+... +++++ +|.|+.|... .+ .+ .......+.+.++.+++.
T Consensus 152 ~aD~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 152 KPTGVVVVSTPQE-LTAVIVEKAINMAEET----NTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CCSEEEEEECSSS-CCHHHHHHHHHHHHTT----TCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEE
T ss_pred cCCeEEEEecCcc-chHHHHHHHHHHHHhC----CCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEE
Confidence 5899999987653 4566666666666442 45666 8999988421 11 11 122355666777877664
No 232
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=64.95 E-value=14 Score=26.97 Aligned_cols=51 Identities=8% Similarity=0.009 Sum_probs=31.3
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC--CCCCceEE-EEEecCCCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD--SIRSKAVI-LVANKTDLV 57 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~--~~~~~pii-lvgNK~Dl~ 57 (167)
..+..+|.+|++...+. .++..+..+++.+.... ...+++++ +|.|+.|-.
T Consensus 129 ~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 129 NALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 34456899999998753 45555544444443211 12456764 889999853
No 233
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=64.34 E-value=35 Score=24.14 Aligned_cols=67 Identities=7% Similarity=0.006 Sum_probs=42.3
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
...+..+|.+|+|.+.+ ..++..+...++.+... ....+-+|.|+.+-.... .....+.+.++.+++
T Consensus 128 ~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 128 MSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRD----IPPEAAEDVMEVPLL 194 (237)
T ss_dssp HHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTC----CCHHHHHHHHCSCEE
T ss_pred HHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccch----hHHHHHHHHhCccce
Confidence 34567799999998864 56777777777777543 124567889999854322 223334445566544
No 234
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=63.17 E-value=25 Score=22.04 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=40.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
..|++|+=+++.+.+.++ ++..++.......+|+|++....|. +.. ..+...|+ .|+. ....
T Consensus 55 ~~dlvi~d~~~~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~~--------~~~-~~~~~~g~~~~l~----kP~~ 117 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGRE----VLAEIKSDPTLKRIPVVVLSTSINE--------DDI-FHSYDLHVNCYIT----KSAN 117 (140)
T ss_dssp CCSEEEECSSCSSSCHHH----HHHHHHHSTTGGGSCEEEEESCCCH--------HHH-HHHHHTTCSEEEE----CCSS
T ss_pred CCcEEEEecCCCcccHHH----HHHHHHcCcccccccEEEEecCCcH--------HHH-HHHHHhchhheec----CCCC
Confidence 356666655555544554 3444444322256899988776552 122 22334566 4443 2446
Q ss_pred HHHHHHHHHHHHHhh
Q psy15004 89 VDELLVGILTQIRLK 103 (167)
Q Consensus 89 v~~lf~~l~~~i~~~ 103 (167)
.+++...+-..+...
T Consensus 118 ~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 118 LSQLFQIVKGIEEFW 132 (140)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555554443
No 235
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=62.13 E-value=8.4 Score=31.07 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=36.5
Q ss_pred CceEEEEEecCCCC--Cc-----cccCh----hHHHHHH----HhcC---CeEEEEec--CCCCCHHHHHHHHHHHHHh
Q psy15004 44 SKAVILVANKTDLV--RC-----RVVTD----EDGKDMA----TAYD---CKFIETSV--GINHNVDELLVGILTQIRL 102 (167)
Q Consensus 44 ~~piilvgNK~Dl~--~~-----~~v~~----~~~~~~~----~~~~---~~~~e~SA--~~~~~v~~lf~~l~~~i~~ 102 (167)
+.|+++|.||.|+. ++ ..... +....+. .+.| ...+.+|+ ..+.|++++.+.+.+.+..
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 57999999999973 10 01111 1222332 1222 25788899 6677899999888877643
No 236
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=61.71 E-value=12 Score=25.25 Aligned_cols=76 Identities=7% Similarity=0.070 Sum_probs=39.5
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVD 90 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~ 90 (167)
+..+|+.=|++..+....+..+-.+ .++|++.+++|.+| |.......++..+-+--..+.++.
T Consensus 49 akLViiA~D~~p~~~~~~l~~lc~~-------~~VP~~~v~sk~eL----------G~a~G~~~~~s~vaI~d~~~s~~~ 111 (134)
T 2ale_A 49 SEFIIMAADCEPIEILLHLPLLCED-------KNVPYVFVPSRVAL----------GRACGVSRPVIAASITTNDASAIK 111 (134)
T ss_dssp EEEEEEETTCSSGGGGTHHHHHHHH-------HTCCEEEESCHHHH----------HHHTTCSSCCSEEEEECCTTCTTH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHh-------cCCCEEEECCHHHH----------HHHhCCCCCeEEEEEEcCChHHHH
Confidence 4445555555433333333332222 27899998888765 222222233323333334445677
Q ss_pred HHHHHHHHHHHhh
Q psy15004 91 ELLVGILTQIRLK 103 (167)
Q Consensus 91 ~lf~~l~~~i~~~ 103 (167)
.+++.+...+...
T Consensus 112 ~l~~~i~~~~~~~ 124 (134)
T 2ale_A 112 TQIYAVKDKIETL 124 (134)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888777776654
No 237
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=60.56 E-value=2.4 Score=34.14 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=15.4
Q ss_pred hhcccCCCcEEEEEEeCCCHHHH
Q psy15004 4 CIANYETPHGFIIVYSTIDLASF 26 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~ 26 (167)
...|++++|++++|+|+++.+++
T Consensus 110 ~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 110 FLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp HHHHHHTSSSEEEEEEC------
T ss_pred HHHHHHhcCeEEEEEecCCCcch
Confidence 46789999999999999865443
No 238
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=58.83 E-value=9 Score=28.78 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=28.2
Q ss_pred CCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCc
Q psy15004 9 ETPHGFIIVYSTID-LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC 59 (167)
Q Consensus 9 ~~ad~~i~v~d~t~-~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~ 59 (167)
..|++.+++.|.+. .-+-.+ ...+..+.. .+++|+|.||+|....
T Consensus 110 aRal~~lllldep~~gL~~lD-~~~l~~L~~-----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLD-LEFMKHLSK-----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHH-HHHHHHHHT-----TSEEEEEETTGGGSCH
T ss_pred heeeeeeEEEecCCCcCCHHH-HHHHHHHHh-----cCcEEEEEeccccCCH
Confidence 34788999999642 111111 334445522 2799999999998653
No 239
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=58.42 E-value=22 Score=25.94 Aligned_cols=48 Identities=8% Similarity=-0.094 Sum_probs=34.6
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
...+..||.+|++...+ ..+...+..+++.+... ..+.++.+|.|+++
T Consensus 161 ~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 161 KNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred HHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 34566799999999874 45677777777777544 23567889999994
No 240
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=56.71 E-value=14 Score=26.82 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=35.0
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCC-----CCCceEEEEEecCCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDS-----IRSKAVILVANKTDL 56 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~-----~~~~piilvgNK~Dl 56 (167)
...+..+|.+|+|.+. +..++..+..+++.+..... .....+.+|.|+.|-
T Consensus 130 ~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 130 LMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred HHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 3445679999999985 46677777777777643310 123578899999984
No 241
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=56.40 E-value=17 Score=26.31 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=14.0
Q ss_pred CCCcEEEEEEeCCCHHH
Q psy15004 9 ETPHGFIIVYSTIDLAS 25 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s 25 (167)
.++|.+|++=|+++...
T Consensus 31 ~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEA 47 (260)
T ss_dssp HCCSEEEEESCCCCCHH
T ss_pred cCCCEEEECCCCCCccC
Confidence 46899999999988543
No 242
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=53.39 E-value=60 Score=23.37 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=41.6
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
..+..+|.+|+|...+ ..+...+..+++.+... ...++-+|.|++|-.... .....+.+.++.+++
T Consensus 128 ~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 128 IAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLGIE----MAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTTHH----HHHHHHHHHTTSCEE
T ss_pred HHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCccccc----chHHHHHHHhCCCeE
Confidence 3456689999998754 56777777777777554 124566889999854221 233445555676544
No 243
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=51.80 E-value=13 Score=26.37 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=28.8
Q ss_pred ccCCCcEEEEEEeC---CCHHHHHHHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 7 NYETPHGFIIVYST---IDLASFHVAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 7 y~~~ad~~i~v~d~---t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
-+..||++|++.-. +-+..+.++..|+..........+.|+.+|+.=
T Consensus 64 ~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S 113 (190)
T 3u7r_A 64 RIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTS 113 (190)
T ss_dssp HHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEE
T ss_pred HHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeC
Confidence 45679999997544 335666666666543222223457788888654
No 244
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=51.30 E-value=70 Score=23.53 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=38.6
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
..+|.+|++... +..++..+..+++.+.......+.+ +-+|.|+.+-.. ..+....+.+.++.+++
T Consensus 142 ~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 142 NKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----EDELIIALANKLGTQMI 208 (289)
T ss_dssp TCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HHHHHHHHHHHHTSCEE
T ss_pred hhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh----HHHHHHHHHHHcCcccc
Confidence 468999999875 4567776666655554322223455 457889986321 12334455556666554
No 245
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=50.81 E-value=35 Score=24.17 Aligned_cols=47 Identities=19% Similarity=0.039 Sum_probs=32.9
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
...+..+|.+|+|.+.+ ..++..+..+.+.+.... -..+.+|.|+.+
T Consensus 148 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~---~~~~~~v~N~~~ 194 (254)
T 3kjh_A 148 RGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG---IKKVRYVINKVR 194 (254)
T ss_dssp HHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CSCEEEEEEEEC
T ss_pred HHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC---CccEEEEEeCCC
Confidence 34567799999999864 667777766666554431 135788899998
No 246
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=49.90 E-value=46 Score=21.02 Aligned_cols=77 Identities=14% Similarity=0.256 Sum_probs=39.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
..|++|+=+++.+.+.++ ++..++.......+|+|++....|. +. ...+...|+ .|+. ...+
T Consensus 62 ~~dlvi~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~t~~~~~--------~~-~~~~~~~g~~~~l~----kP~~ 124 (149)
T 1k66_A 62 RPAVILLDLNLPGTDGRE----VLQEIKQDEVLKKIPVVIMTTSSNP--------KD-IEICYSYSISSYIV----KPLE 124 (149)
T ss_dssp CCSEEEECSCCSSSCHHH----HHHHHTTSTTGGGSCEEEEESCCCH--------HH-HHHHHHTTCSEEEE----CCSS
T ss_pred CCcEEEEECCCCCCCHHH----HHHHHHhCcccCCCeEEEEeCCCCH--------HH-HHHHHHCCCCEEEe----CCCC
Confidence 356666655554444444 4455544322256888888765541 12 222334566 4443 2446
Q ss_pred HHHHHHHHHHHHHhh
Q psy15004 89 VDELLVGILTQIRLK 103 (167)
Q Consensus 89 v~~lf~~l~~~i~~~ 103 (167)
.+++...+-..+...
T Consensus 125 ~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 125 IDRLTETVQTFIKYW 139 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665555544443
No 247
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=47.71 E-value=24 Score=26.30 Aligned_cols=45 Identities=7% Similarity=0.036 Sum_probs=30.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecCCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLV 57 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~Dl~ 57 (167)
...+|++|+|..... .+...+...++.+... +.+++ +|.|++|..
T Consensus 212 ~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 212 SKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT----GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT----TCEEEEEEEEEECC-
T ss_pred HHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC----CCCEEEEEEeCCcCC
Confidence 356899999998653 4556666666666432 45665 889999853
No 248
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.96 E-value=35 Score=21.53 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
..|++|+=+++.+.+.++ ++..++......++|+|++....|. ......+...|+ .|+. ....
T Consensus 50 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~~--------~~~~~~~~~~g~~~~l~----kP~~ 113 (140)
T 3grc_A 50 PYAAMTVDLNLPDQDGVS----LIRALRRDSRTRDLAIVVVSANARE--------GELEFNSQPLAVSTWLE----KPID 113 (140)
T ss_dssp CCSEEEECSCCSSSCHHH----HHHHHHTSGGGTTCEEEEECTTHHH--------HHHHHCCTTTCCCEEEC----SSCC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCcccCCCCEEEEecCCCh--------HHHHHHhhhcCCCEEEe----CCCC
Confidence 356666655555544554 4445544222357888877654331 111112223455 3443 3457
Q ss_pred HHHHHHHHHHHHHhh
Q psy15004 89 VDELLVGILTQIRLK 103 (167)
Q Consensus 89 v~~lf~~l~~~i~~~ 103 (167)
.+++...+...+...
T Consensus 114 ~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 114 ENLLILSLHRAIDNM 128 (140)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777666666543
No 249
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=43.87 E-value=67 Score=26.72 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe--cCCCCCHHHHHHHHHHHH
Q psy15004 26 FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS--VGINHNVDELLVGILTQI 100 (167)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S--A~~~~~v~~lf~~l~~~i 100 (167)
|.++..-++.++.+ ++|+|+..|+..-..+.+ .+..++++.+.|+.+..+. ++-|+|-.++-+.+++.+
T Consensus 346 ~~NL~kHIen~~~f----GvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 346 FKNLRVHVENLRKF----NLPVVVALNRFSTDTEKE--IAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEEEECCTTCCHHH--HHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc----CCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 34454555555543 799999999987433222 3456778888898765443 244566666655555544
No 250
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=43.62 E-value=49 Score=20.38 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=24.1
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.|++|+=+++.+.+.++ ++..++.......+|+|++....|.
T Consensus 48 ~dlii~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 48 YDAVFIDLNLPDTSGLA----LVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp CSEEEEESBCSSSBHHH----HHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhhhccCCCCEEEEECCcch
Confidence 56666666665555554 4444544322457888888776663
No 251
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=42.69 E-value=9.2 Score=28.46 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=20.0
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 12 d~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
+|+|+||+...+...+.+.+. + .. ...+.-+++||.-.+
T Consensus 104 ggII~~f~~p~~~~~~~i~~~---~-~~-~~~dg~~v~Vg~~~~ 142 (233)
T 3uc9_A 104 AGIILITDIRQTKPQELLHQF---M-IA-AHRNTFVVLVNVNEE 142 (233)
T ss_dssp EEEEEEECHHHHCGGGTHHHH---H-HH-SCTTCEEEEEECCTT
T ss_pred ceEEEEEeCCCcchHHHHHHH---h-cc-CCCCceEEEEecCCc
Confidence 688999976544444333322 2 22 123455666664433
No 252
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=41.78 E-value=12 Score=26.06 Aligned_cols=46 Identities=4% Similarity=0.117 Sum_probs=22.7
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh--CCCCCceEEEEEec
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK--DSIRSKAVILVANK 53 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~--~~~~~~piilvgNK 53 (167)
+.++|++|+++-+=.-.--..++.|++.+... ....+.|++++++=
T Consensus 70 l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 70 IRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred HHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 44677777765443211112345566665321 11345566666654
No 253
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=41.54 E-value=23 Score=25.14 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=27.0
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh--CCCCCceEEEEEec
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK--DSIRSKAVILVANK 53 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~--~~~~~~piilvgNK 53 (167)
+..||++|++.-.=+-.---.++.|++.+... ....+.|+.++++=
T Consensus 71 i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 71 IATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 56799999987664321112345566666431 12356788888764
No 254
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=40.20 E-value=20 Score=25.21 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=37.5
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh---------CCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKK---------DSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCK 77 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~---------~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~ 77 (167)
-+..||++|+++-+=+-.---.++.|++.+... ....+.|++++++=-... ........+.+...+|+.
T Consensus 64 ~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g--~~~~~~~l~~~l~~~G~~ 141 (192)
T 3fvw_A 64 EVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGAS--PEEVFEDYRSLLPFIRMH 141 (192)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCE
T ss_pred HHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcc--hhHHHHHHHHHHHHcCCe
Confidence 356799999987664422223456677777531 123567777776543311 111223445555566664
Q ss_pred E
Q psy15004 78 F 78 (167)
Q Consensus 78 ~ 78 (167)
.
T Consensus 142 ~ 142 (192)
T 3fvw_A 142 L 142 (192)
T ss_dssp E
T ss_pred e
Confidence 3
No 255
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=39.96 E-value=53 Score=22.61 Aligned_cols=48 Identities=8% Similarity=-0.037 Sum_probs=30.7
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh--CCCCCceEEEEEecCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK--DSIRSKAVILVANKTD 55 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~--~~~~~~piilvgNK~D 55 (167)
+.++|++|+.+-+-.-.-...++.|++.+... ....+.+++++++--.
T Consensus 50 l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 50 VLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred HHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 45689999998875433334566777776431 1235678888887543
No 256
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=39.50 E-value=71 Score=20.17 Aligned_cols=58 Identities=10% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCC-CHHHHHHHHHHHHHh
Q psy15004 32 CLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINH-NVDELLVGILTQIRL 102 (167)
Q Consensus 32 ~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~-~v~~lf~~l~~~i~~ 102 (167)
++..++......++|+|++....|. +.. ..+...|+ .|+. ... +.+++...|...+..
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~~--------~~~-~~~~~~ga~~~l~----Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 69 VMSAVRKPGANQHTPIVILTDNVSD--------DRA-KQCMAAGASSVVD----KSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp HHHHHHSSSTTTTCCEEEEETTCCH--------HHH-HHHHHTTCSEEEE----CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCEEEEeCCCCH--------HHH-HHHHHcCCCEEEE----CCCCcHHHHHHHHHHHHHH
Confidence 5556654323467899888776552 222 22334565 4554 234 666666666555544
No 257
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=38.19 E-value=53 Score=19.52 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=18.6
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
.|++|+=++..+.+.++ .+..++......++|+|++.+..+
T Consensus 46 ~dlii~d~~~~~~~~~~----~~~~l~~~~~~~~~~ii~~~~~~~ 86 (119)
T 2j48_A 46 PIVILMAWPPPDQSCLL----LLQHLREHQADPHPPLVLFLGEPP 86 (119)
T ss_dssp CSEEEEECSTTCCTHHH----HHHHHHHTCCCSSCCCEEEESSCC
T ss_pred CCEEEEecCCCCCCHHH----HHHHHHhccccCCCCEEEEeCCCC
Confidence 35554444433333333 333443332224567777666544
No 258
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=38.03 E-value=42 Score=25.91 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=38.7
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVD 90 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~ 90 (167)
.|-.+++.|.+.. +++......+.... + ..+++.||.|.... .-.+.......+.++..++ +|++++
T Consensus 242 ~de~llvLDa~t~---~~~~~~~~~~~~~~---~-it~iilTKlD~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 242 PNLVIFVGDALAG---NAIVEQARQFNEAV---K-IDGIILTKLDADAR----GGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp CSEEEEEEEGGGT---THHHHHHHHHHHHS---C-CCEEEEECGGGCSC----CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred CCCCEEEEecHHH---HHHHHHHHHHHHhc---C-CCEEEEeCcCCccc----hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 5778888887543 23333333443221 1 34677899995321 1233445566788777776 666665
Q ss_pred HH
Q psy15004 91 EL 92 (167)
Q Consensus 91 ~l 92 (167)
++
T Consensus 309 dl 310 (328)
T 3e70_C 309 DL 310 (328)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 259
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=37.61 E-value=35 Score=24.04 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=25.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh--CCCCCceEEEEEe
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK--DSIRSKAVILVAN 52 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~--~~~~~~piilvgN 52 (167)
+..||++|++.-.=+-.---.++.|++.+... ....+.|+.++++
T Consensus 70 i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~ 116 (193)
T 3svl_A 70 IRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTS 116 (193)
T ss_dssp HHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEE
T ss_pred HHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEe
Confidence 45789999887664322112334555555331 1235678877776
No 260
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.59 E-value=61 Score=20.35 Aligned_cols=42 Identities=7% Similarity=0.160 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.|++|+=++..+.+.++ ++..++.......+|+|++....|.
T Consensus 52 ~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~~s~~~~~ 93 (142)
T 3cg4_A 52 SGVVLLDIMMPGMDGWD----TIRAILDNSLEQGIAIVMLTAKNAP 93 (142)
T ss_dssp CEEEEEESCCSSSCHHH----HHHHHHHTTCCTTEEEEEEECTTCC
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhhcccCCCCEEEEECCCCH
Confidence 45555544444444444 4445544223457899998887664
No 261
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=37.44 E-value=82 Score=20.30 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=41.0
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
..|++|+=+++.+.+.++ ++..++.......+|+|++....|. +.. ..+...|+ .|+. ....
T Consensus 51 ~~dlii~D~~l~~~~g~~----~~~~lr~~~~~~~~pii~~s~~~~~--------~~~-~~~~~~g~~~~l~----KP~~ 113 (154)
T 3gt7_A 51 RPDLIISDVLMPEMDGYA----LCRWLKGQPDLRTIPVILLTILSDP--------RDV-VRSLECGADDFIT----KPCK 113 (154)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHHSTTTTTSCEEEEECCCSH--------HHH-HHHHHHCCSEEEE----SSCC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCCcCCCCEEEEECCCCh--------HHH-HHHHHCCCCEEEe----CCCC
Confidence 356666655555555555 4445544333467899888765541 222 22334465 4543 3456
Q ss_pred HHHHHHHHHHHHHh
Q psy15004 89 VDELLVGILTQIRL 102 (167)
Q Consensus 89 v~~lf~~l~~~i~~ 102 (167)
.+++...+...+..
T Consensus 114 ~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 114 DVVLASHVKRLLSG 127 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67776665555543
No 262
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=36.58 E-value=23 Score=25.06 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=28.6
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVAN 52 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgN 52 (167)
-+..||++|++.-+=+-.---.++.|++.+.. ....+.|++++++
T Consensus 82 ~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~l~gK~~~~v~t 126 (191)
T 3k1y_A 82 ALSASDGLVVATPVFKASYTGLFKMFFDILDT-DALTGMPTIIAAT 126 (191)
T ss_dssp HHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TTTTTCEEEEEEE
T ss_pred HHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hhcCCCEEEEEEe
Confidence 35679999998776443222344666666632 2346788888887
No 263
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=36.25 E-value=22 Score=23.57 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=7.8
Q ss_pred HHHHHHHhcCCeEEEE
Q psy15004 66 DGKDMATAYDCKFIET 81 (167)
Q Consensus 66 ~~~~~~~~~~~~~~e~ 81 (167)
....++..++++|+.+
T Consensus 58 ~i~~lc~~~~Ip~~~v 73 (126)
T 2xzm_U 58 LVKALCAKNEIKYVSV 73 (126)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 3444555555555443
No 264
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=35.41 E-value=35 Score=28.55 Aligned_cols=70 Identities=9% Similarity=-0.077 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 27 HVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.++..-++.++. -++|+|+..|+..-..+.+ .+..++++.+.|+.+..+=++-|.|-.++-+.+++.+..
T Consensus 361 ~NL~kHien~~~----fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 361 ANLEKHIENIGK----FGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp HHHHHHHHHHHT----TTCCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 344444555543 3899999999987432222 234455666667765544455567777777777776643
No 265
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=35.08 E-value=40 Score=27.22 Aligned_cols=34 Identities=6% Similarity=-0.007 Sum_probs=26.3
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKK 39 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~ 39 (167)
..|+..+++.++|+|.++. +++....|+..+...
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 5677778899999999987 667777787777554
No 266
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=34.36 E-value=17 Score=25.54 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=37.7
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
+.++|++|+++-+-.-.-...++.|++.+.. ....+.|++++++ ..-.............+....|+.++
T Consensus 67 i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~-~~~~gK~~~~~~t-gg~~~~~~a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 67 TCNADGLIVATPIYKASYTGLLKAFLDILPQ-FALAGKAALPLAT-GGSPAHVLALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHTTSCT-TTTTTCEEEEEEE-ESSGGGGGHHHHTHHHHHHTTTCSEE
T ss_pred HHHCCEEEEEeCccCCCCCHHHHHHHHhccc-cccCCCEEEEEEE-CCCcchhhHHHHHHHHHHHHcCCEec
Confidence 5679999999877542222334556665532 1345789999888 44321111001134455566676443
No 267
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=34.28 E-value=91 Score=19.88 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
..|++|+=+++.+.+.++ ++..++......++|+|++....|. .....+...|+ .|+. ....
T Consensus 59 ~~dliilD~~l~~~~g~~----~~~~lr~~~~~~~~pii~~t~~~~~---------~~~~~~~~~g~~~~l~----KP~~ 121 (152)
T 3heb_A 59 RAQLVLLDLNLPDMTGID----ILKLVKENPHTRRSPVVILTTTDDQ---------REIQRCYDLGANVYIT----KPVN 121 (152)
T ss_dssp CBEEEEECSBCSSSBHHH----HHHHHHHSTTTTTSCEEEEESCCCH---------HHHHHHHHTTCSEEEE----CCSS
T ss_pred CCCEEEEeCCCCCCcHHH----HHHHHHhcccccCCCEEEEecCCCH---------HHHHHHHHCCCcEEEe----CCCC
Confidence 355555555555555555 4445544323467898888765541 12222345566 4443 2456
Q ss_pred HHHHHHHHHHH
Q psy15004 89 VDELLVGILTQ 99 (167)
Q Consensus 89 v~~lf~~l~~~ 99 (167)
.+++...+-+.
T Consensus 122 ~~~l~~~i~~~ 132 (152)
T 3heb_A 122 YENFANAIRQL 132 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555444
No 268
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=33.94 E-value=32 Score=24.19 Aligned_cols=46 Identities=7% Similarity=0.162 Sum_probs=28.9
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC------------CCCCceEEEEEec
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKD------------SIRSKAVILVANK 53 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~------------~~~~~piilvgNK 53 (167)
+.+||++|+++-+=.-.---.++.|++.+.... ...+.+++++.+-
T Consensus 71 l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~ 128 (196)
T 3lcm_A 71 VTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTH 128 (196)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEEC
T ss_pred HHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcC
Confidence 467999999988754322234577888884320 1345677666654
No 269
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=33.43 E-value=63 Score=22.12 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEE
Q psy15004 44 SKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET 81 (167)
Q Consensus 44 ~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 81 (167)
+.|+|++|.-+...+ ..++..++++..+++++.+
T Consensus 35 krPvil~G~g~~~~~----a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 35 KRPLLMVGTLALDPE----LLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp SSEEEEECSTTCCHH----HHHHHHHHHHHHTCCEEEC
T ss_pred CCCEEEECCCccchh----HHHHHHHHHHHhCCCEEEC
Confidence 679999999876321 2456788999999998754
No 270
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=32.96 E-value=51 Score=22.98 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=28.7
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh-------CCCCCceEEEEEec
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKK-------DSIRSKAVILVANK 53 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~-------~~~~~~piilvgNK 53 (167)
-+.+||++|+.+-+-.-.---.++.|++.+... ....+.+++++.+=
T Consensus 48 ~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 48 LLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred HHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 356899999999875422223457788886432 12345666666543
No 271
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=32.58 E-value=39 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=30.2
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh------------CCCCCceEEEEEecC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK------------DSIRSKAVILVANKT 54 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~------------~~~~~~piilvgNK~ 54 (167)
+.+||++|+.+-+-.-.--..++.|++.+... ....+.+++++.+=-
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~G 149 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTG 149 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCC
Confidence 67899999999885422223457798887432 123466777776643
No 272
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=32.09 E-value=23 Score=26.27 Aligned_cols=69 Identities=6% Similarity=-0.097 Sum_probs=37.3
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh----CCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKK----DSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCK 77 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~----~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~ 77 (167)
-+..||++|++.-+=+-.-.-.++.|++.+... ....+.|+.++++=-.. .. .........+...+|+.
T Consensus 95 ~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg-~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 95 LSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QS-FNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCE
T ss_pred HHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cH-HHHHHHHHHHHHHCCCE
Confidence 356799999998775432223445566665321 12357788888874221 11 11123444555556654
No 273
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=32.01 E-value=34 Score=21.93 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=35.4
Q ss_pred cCCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 8 YETPHGFIIVYSTIDLASFH--VAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~--~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
+.++|++|++..+-.-.-.. .+..+++.+.. ...+.++.++++--.- .. -............|+.++
T Consensus 44 l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g~~-~~--~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 44 VASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYGWG-SG--EWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEESSC-CS--HHHHHHHHHHHHTTCEEE
T ss_pred HhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecCCC-Cc--hHHHHHHHHHHHCCCEEc
Confidence 45788999987764311111 25556666532 2356788888874321 11 122344445555676544
No 274
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=31.86 E-value=29 Score=23.95 Aligned_cols=73 Identities=4% Similarity=0.015 Sum_probs=39.2
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh------------CCCCCceEEEEEecCCCCCcc--ccChhHHHHHHH
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKK------------DSIRSKAVILVANKTDLVRCR--VVTDEDGKDMAT 72 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~------------~~~~~~piilvgNK~Dl~~~~--~v~~~~~~~~~~ 72 (167)
-+.+||++|+++-+-.-.--..++.|++.+... ....+.+++++++=-.-.... .......+.+..
T Consensus 83 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l~ 162 (201)
T 1t5b_A 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLG 162 (201)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHHH
T ss_pred HHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHHh
Confidence 356799999998774422223457788887521 013467887777633211111 111223445556
Q ss_pred hcCCeEE
Q psy15004 73 AYDCKFI 79 (167)
Q Consensus 73 ~~~~~~~ 79 (167)
..|+..+
T Consensus 163 ~~G~~~~ 169 (201)
T 1t5b_A 163 FIGITDV 169 (201)
T ss_dssp HTTCCCE
T ss_pred hcCccee
Confidence 6676443
No 275
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=31.72 E-value=36 Score=23.44 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=26.8
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVAN 52 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgN 52 (167)
-+..||++|+++-+-.-.--..++.|++.+.. ...+.|++++.+
T Consensus 81 ~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~ 124 (191)
T 1t0i_A 81 IVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY 124 (191)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE
T ss_pred HHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe
Confidence 35689999998877542222345667766532 234567776654
No 276
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=31.40 E-value=1.7e+02 Score=22.18 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=39.7
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEE-EEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVI-LVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pii-lvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+..||.+|++... +..+++.+...+..+.......+.++. +|.|.++.. .+...+++.++.+++.
T Consensus 184 l~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~~v~~~a~~~~~~~lg 249 (314)
T 3fwy_A 184 LQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRLA 249 (314)
T ss_dssp GGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred HhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------hHHHHHHHHhCCeEEE
Confidence 5568999888764 466777777766666544333344442 566876642 3445666777766553
No 277
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=31.37 E-value=32 Score=23.42 Aligned_cols=31 Identities=6% Similarity=-0.127 Sum_probs=19.0
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALW 37 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~ 37 (167)
-+.++|++|+++-+-.-.--..++.|++.+.
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRWS 98 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTHH
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHhH
Confidence 3568999999988754222233455666553
No 278
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=31.01 E-value=95 Score=19.09 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=40.5
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
..|++|+=+++.+.+.++ ++..++.....+++|+|++....|.. . ..+...|+ .|+. ...+
T Consensus 47 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~~s~~~~~~--------~--~~~~~~g~~~~l~----KP~~ 108 (133)
T 3nhm_A 47 PPDVLISDVNMDGMDGYA----LCGHFRSEPTLKHIPVIFVSGYAPRT--------E--GPADQPVPDAYLV----KPVK 108 (133)
T ss_dssp CCSEEEECSSCSSSCHHH----HHHHHHHSTTTTTCCEEEEESCCC---------------TTSCCCSEEEE----SSCC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCccCCCCEEEEeCCCcHh--------H--HHHhhcCCceEEe----ccCC
Confidence 356666655555544544 44455443234578988887665421 1 12223454 3443 3567
Q ss_pred HHHHHHHHHHHHHhh
Q psy15004 89 VDELLVGILTQIRLK 103 (167)
Q Consensus 89 v~~lf~~l~~~i~~~ 103 (167)
.+++...+...+...
T Consensus 109 ~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 109 PPVLIAQLHALLARA 123 (133)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 778777766666554
No 279
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=30.98 E-value=51 Score=20.78 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=35.1
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v 89 (167)
.|++|+=++..+.+.++ .+..++.......+|+|++....|. .....+...|+ .|+. .....
T Consensus 60 ~dlii~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~ls~~~~~---------~~~~~~~~~g~~~~l~----kP~~~ 122 (143)
T 2qvg_A 60 PKLILLDINIPKMNGIE----FLKELRDDSSFTDIEVFVLTAAYTS---------KDKLAFESLNIRGHLI----KPLDY 122 (143)
T ss_dssp CSEEEEETTCTTSCHHH----HHHHHTTSGGGTTCEEEEEESCCCH---------HHHHHHTTTTCCEEEE----SSCCH
T ss_pred CCEEEEecCCCCCCHHH----HHHHHHcCccccCCcEEEEeCCCCH---------HHHHHHHhcCCCeEEE----CCCCH
Confidence 56655554444434443 4445543322257888888776541 11222334565 3443 34566
Q ss_pred HHHHHHHH
Q psy15004 90 DELLVGIL 97 (167)
Q Consensus 90 ~~lf~~l~ 97 (167)
+++...+.
T Consensus 123 ~~L~~~~~ 130 (143)
T 2qvg_A 123 GEAIKLFW 130 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 280
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=30.75 E-value=1.1e+02 Score=19.87 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=41.5
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGIN 86 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~ 86 (167)
-|.+-|++++|-. .|. +.++.++++... .++-+++|-|.-|-. + ..++++-...-|..+-.+|-+
T Consensus 74 rypqldvvvivtt-ddk---ewikdfieeake----rgvevfvvynnkddd--r---rkeaqqefrsdgvdvrtvsdk-- 138 (162)
T 2l82_A 74 RYPQLDVVVIVTT-DDK---EWIKDFIEEAKE----RGVEVFVVYNNKDDD--R---RKEAQQEFRSDGVDVRTVSDK-- 138 (162)
T ss_dssp HCTTCCEEEEEEC-CCH---HHHHHHHHHHHH----TTCEEEEEEECSCHH--H---HHHHHHHHCCSSCEEEEESSH--
T ss_pred hCCCCcEEEEEec-CcH---HHHHHHHHHHHh----cCcEEEEEecCCCch--h---HHHHHHHhhhcCceeeecCCH--
Confidence 3566888877753 232 444555555543 367788887766621 1 234444444556666666654
Q ss_pred CCHHHHHHHHHHHH
Q psy15004 87 HNVDELLVGILTQI 100 (167)
Q Consensus 87 ~~v~~lf~~l~~~i 100 (167)
+++++.+-+.+
T Consensus 139 ---eelieqvrrfv 149 (162)
T 2l82_A 139 ---EELIEQVRRFV 149 (162)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 45555444433
No 281
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=30.31 E-value=51 Score=21.22 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=26.5
Q ss_pred cCCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhCCCCCceEEEEEec
Q psy15004 8 YETPHGFIIVYSTIDLASFH--VAEQCLQALWKKDSIRSKAVILVANK 53 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~--~~~~~~~~l~~~~~~~~~piilvgNK 53 (167)
+.++|++|++..+-...-+. .+..|++.+... ..+.++.++++-
T Consensus 43 l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~ 88 (138)
T 5nul_A 43 LLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSY 88 (138)
T ss_dssp HTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEE
T ss_pred HhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEec
Confidence 46788888888764321111 345566666432 356788888873
No 282
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=30.26 E-value=22 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=7.1
Q ss_pred CceEEEEEecCCC
Q psy15004 44 SKAVILVANKTDL 56 (167)
Q Consensus 44 ~~piilvgNK~Dl 56 (167)
++|++.+.+|.+|
T Consensus 53 ~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 53 GISVSMVESMKKL 65 (82)
T ss_dssp TCCEEEESCHHHH
T ss_pred CCCEEEECCHHHH
Confidence 4566655555443
No 283
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=29.66 E-value=46 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=26.3
Q ss_pred CCceEEEEEecCC--CCCccccChhHHHHHHHh--cCCeEEEEecCCC
Q psy15004 43 RSKAVILVANKTD--LVRCRVVTDEDGKDMATA--YDCKFIETSVGIN 86 (167)
Q Consensus 43 ~~~piilvgNK~D--l~~~~~v~~~~~~~~~~~--~~~~~~e~SA~~~ 86 (167)
...|++++.|+.+ +.+...-.......++.. .+.+++.+||+..
T Consensus 221 t~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E 268 (396)
T 2ohf_A 221 TSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALE 268 (396)
T ss_dssp GGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHHH
T ss_pred hCCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHHH
Confidence 4679999999974 221111011234445544 3678999999864
No 284
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=29.34 E-value=1.8e+02 Score=22.40 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=15.9
Q ss_pred HhcCCeEEEEecCC---------CCCHHHHHHHHHHHHHhhhCCC
Q psy15004 72 TAYDCKFIETSVGI---------NHNVDELLVGILTQIRLKLDNP 107 (167)
Q Consensus 72 ~~~~~~~~e~SA~~---------~~~v~~lf~~l~~~i~~~~~~~ 107 (167)
+..+.|.|++++.. ..+..+.|..|+..|.......
T Consensus 308 q~~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~ 352 (361)
T 3pg5_A 308 QDVHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPN 352 (361)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHCCC
T ss_pred HHHCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 34456778887755 4477889999999998766543
No 285
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=28.12 E-value=31 Score=22.50 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.+..+|+.-|++.. .+..++..+-+. .++|++.+.+|.+|
T Consensus 41 ka~LVvIA~D~~p~----~i~~~l~~lC~~---~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 41 KAKLVLIANDVDPI----ELVVFLPALCKK---MGVPYAIVKGKARL 80 (113)
T ss_dssp CCSEEEECSCCSSH----HHHTTHHHHHHH---TTCCCEECSCSTTT
T ss_pred CceEEEEeCCCCHH----HHHHHHHHHHHH---cCCCEEEECCHHHH
Confidence 35556666665432 112233333222 37888888888876
No 286
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=28.11 E-value=44 Score=24.13 Aligned_cols=70 Identities=9% Similarity=-0.053 Sum_probs=38.1
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh---CCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK---DSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~---~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
+.+||++|+.+-+-.-.-...++.|++.+... ....+.|++++++=-.- ... ........+....|+.++
T Consensus 77 l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g~~-~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 77 LLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-GSD-NVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-CSC-CHHHHHHHHHHHTTCEEE
T ss_pred HHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-chh-hHHHHHHHHHHHCCCeee
Confidence 46799999988775432223456677776321 12346677777654221 111 122344556666777544
No 287
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=27.99 E-value=61 Score=21.59 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i 100 (167)
.++|++.+++|.+| +..+-....+..+-+--..+..+.++++.+...|
T Consensus 83 ~~IP~~~v~sk~eL----------G~a~G~~~~v~~vaI~d~~~s~i~~~~~~~~~~~ 130 (135)
T 2aif_A 83 KNTPYVFVRSKVAL----------GRACGVSRPVIAAAITSKDGSSLSSQITELKDQI 130 (135)
T ss_dssp TTCCEEEESCHHHH----------HHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHTT
T ss_pred cCCcEEEECCHHHH----------HHHhCCCCcEEEEEEEcCCcHHHHHHHHHHHHHH
Confidence 47899988887654 2222222232222222233455666666665544
No 288
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=27.97 E-value=47 Score=23.48 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=29.0
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh--------CCCCCceEEEEEec
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKK--------DSIRSKAVILVANK 53 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~--------~~~~~~piilvgNK 53 (167)
-+.+||++|+.+-+-.-.---.++.|++.+... ....+.+++++.+=
T Consensus 55 ~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~ 109 (192)
T 3f2v_A 55 LIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSL 109 (192)
T ss_dssp HHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEE
T ss_pred HHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeC
Confidence 356899999999875422223457799887432 12345666666543
No 289
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=27.75 E-value=1.1e+02 Score=23.79 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=25.0
Q ss_pred cccCCCcEEEEEEeCCCHHHHH-------HHHHHHHHHHhhCCCCCc-eEEEEEecCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFH-------VAEQCLQALWKKDSIRSK-AVILVANKTD 55 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~-------~~~~~~~~l~~~~~~~~~-piilvgNK~D 55 (167)
..+..+|.+|+|...+. .++. .+...++.+........+ -++.+.|+.|
T Consensus 265 ~al~~aD~vliv~~p~~-~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 265 NGLAASDLLLTPTPPAQ-VDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp HHHHHCSEEEEEECSSH-HHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred HHHHHCCEEEEEecCch-hhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 34557899999997643 2322 233334444333212222 2566788887
No 290
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=27.68 E-value=80 Score=19.35 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=10.8
Q ss_pred EEEEEEeCCCHHHHH
Q psy15004 13 GFIIVYSTIDLASFH 27 (167)
Q Consensus 13 ~~i~v~d~t~~~s~~ 27 (167)
.+|++||+++.....
T Consensus 5 ~~lV~YDI~~~kr~~ 19 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRV 19 (90)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEEeCCChHHHH
Confidence 489999998863333
No 291
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=27.49 E-value=86 Score=19.35 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.0
Q ss_pred cEEEEEEeCCCHH
Q psy15004 12 HGFIIVYSTIDLA 24 (167)
Q Consensus 12 d~~i~v~d~t~~~ 24 (167)
-.+|++||+++..
T Consensus 4 M~vlV~YDI~~~k 16 (91)
T 3exc_X 4 MKLLVVYDVSDDS 16 (91)
T ss_dssp CEEEEEEECCSHH
T ss_pred eEEEEEEeCCCch
Confidence 3589999998753
No 292
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=27.16 E-value=1.6e+02 Score=20.38 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=30.7
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceE-EEEEecCCCCCccccChhHHHHHHHhcCCeEE
Q psy15004 14 FIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV-ILVANKTDLVRCRVVTDEDGKDMATAYDCKFI 79 (167)
Q Consensus 14 ~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~pi-ilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 79 (167)
+|+|.... ..++..+...++.+.. .+.++ -+|.|++|-.. ....+....+.+.++.+++
T Consensus 141 vi~v~~~~-~~~~~~~~~~i~~l~~----~~~~i~gvvlN~~~~~~--~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 141 VILVVGVK-LGCINHAMLTAQVIQH----AGLTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp EEEEEECS-TTHHHHHHHHHHHHHH----TTCCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEE
T ss_pred EEEEecCC-CCcHHHHHHHHHHHHH----CCCcEEEEEEeCCCCch--hhHHHHHHHHHHHcCCCEE
Confidence 66666653 4566666666666642 24454 47789888531 1112233334444566554
No 293
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=26.97 E-value=59 Score=20.43 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=34.8
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v 89 (167)
.|++|+=+++.+.+.++ ++..++......++|+|++....|..... -+...|+ .|+. .....
T Consensus 47 ~dlvi~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~~~~~~---------~~~~~g~~~~l~----KP~~~ 109 (140)
T 3n53_A 47 PDLVILDMDIIGENSPN----LCLKLKRSKGLKNVPLILLFSSEHKEAIV---------NGLHSGADDYLT----KPFNR 109 (140)
T ss_dssp CSEEEEETTC------C----HHHHHHTSTTCTTCCEEEEECC----CTT---------TTTTCCCSEEEE----SSCCH
T ss_pred CCEEEEeCCCCCCcHHH----HHHHHHcCcccCCCCEEEEecCCCHHHHH---------HHHhcCCCeeee----CCCCH
Confidence 45555544443333333 45556544333678999888776532111 1123455 4443 34567
Q ss_pred HHHHHHHHHHHHh
Q psy15004 90 DELLVGILTQIRL 102 (167)
Q Consensus 90 ~~lf~~l~~~i~~ 102 (167)
+++...+...+..
T Consensus 110 ~~l~~~i~~~~~~ 122 (140)
T 3n53_A 110 NDLLSRIEIHLRT 122 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7777666655543
No 294
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.40 E-value=1.1e+02 Score=18.83 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=10.5
Q ss_pred CCceEEEE-EecCCCC
Q psy15004 43 RSKAVILV-ANKTDLV 57 (167)
Q Consensus 43 ~~~piilv-gNK~Dl~ 57 (167)
.++|++.+ ++|.+|-
T Consensus 56 ~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 56 SDIPVYEFEGTSVELG 71 (99)
T ss_dssp TTCCEEEECCCSCGGG
T ss_pred cCCCEEEeCCCHHHHH
Confidence 37887655 8888773
No 295
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=26.26 E-value=57 Score=23.62 Aligned_cols=47 Identities=6% Similarity=0.067 Sum_probs=29.6
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhh------------CCCCCceEEEEEecC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKK------------DSIRSKAVILVANKT 54 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~------------~~~~~~piilvgNK~ 54 (167)
+..||++|+++-+-.-.---.++.|++.+... ....+.+++++.+=-
T Consensus 90 l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g 148 (228)
T 3tem_A 90 VREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 148 (228)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCC
Confidence 56899999999875422223457788887432 123456777776543
No 296
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.00 E-value=1.2e+02 Score=18.85 Aligned_cols=76 Identities=8% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHN 88 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~ 88 (167)
..|++|+=+.+.+.+.++ ++..++.......+|+|++....|. +. ..-+...|+ .|+. ...+
T Consensus 48 ~~dlvl~D~~lp~~~g~~----~~~~lr~~~~~~~~pii~~t~~~~~--------~~-~~~~~~~ga~~~l~----KP~~ 110 (136)
T 3t6k_A 48 LPDALICDVLLPGIDGYT----LCKRVRQHPLTKTLPILMLTAQGDI--------SA-KIAGFEAGANDYLA----KPFE 110 (136)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHHSGGGTTCCEEEEECTTCH--------HH-HHHHHHHTCSEEEE----TTCC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHcCCCcCCccEEEEecCCCH--------HH-HHHHHhcCcceEEe----CCCC
Confidence 356666555544444555 3344443322356888888766542 11 122334455 4543 3557
Q ss_pred HHHHHHHHHHHHHh
Q psy15004 89 VDELLVGILTQIRL 102 (167)
Q Consensus 89 v~~lf~~l~~~i~~ 102 (167)
.+++...+...+..
T Consensus 111 ~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 111 PQELVYRVKNILAR 124 (136)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 77777666655543
No 297
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=25.61 E-value=79 Score=22.28 Aligned_cols=30 Identities=3% Similarity=0.003 Sum_probs=19.8
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALW 37 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~ 37 (167)
+.+||++|+++-+=.-.---.++.|++.+.
T Consensus 68 l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 68 FLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred HHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 567999999988754222234567888764
No 298
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=25.24 E-value=14 Score=25.26 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=34.4
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+..+|++|++.-+=+-.-...++.|++.+... ...+.|+.++++=-.-... .......+......|+.++.
T Consensus 61 i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~-~~~gK~~~~~~~sgg~~g~-~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 61 VTKADAIVLLSPEYHSGMSGALKNALDFLSSE-QFKYKPVALLAVAGGGDGG-INALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HHHCSSEEEEEECSSSSCCHHHHHHHHTCCHH-HHTTCEEEEEEECCSTTCS-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHh-hhCCCcEEEEEECCCChhH-HHHHHHHHHHHHHcCCEEec
Confidence 45688888887764422223334444433211 1235677777753321111 11123445555566765443
No 299
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=25.16 E-value=99 Score=22.17 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=30.6
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEe
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVAN 52 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgN 52 (167)
++|++.+.++.....+...+.+.++.+++.....++|+++-|.
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred CCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 5788888778887778888888999987652223567665443
No 300
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.13 E-value=1.2e+02 Score=24.28 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=33.0
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEe
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 82 (167)
.+|.+++|.|.+.. .++......+... -+ ..-+|.||.|.... ...+..+....+.++..+.
T Consensus 210 ~pd~vlLVvDa~tg---q~av~~a~~f~~~---l~-i~GVIlTKlD~~~~----~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 210 GPDEVLLVLDAMTG---QEALSVARAFDEK---VG-VTGLVLTKLDGDAR----GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp CCSEEEEEEEGGGT---THHHHHHHHHHHH---TC-CCEEEEESGGGCSS----CHHHHHHHHHHCCCEEEEE
T ss_pred CCceEEEEEeccch---HHHHHHHHHHHhc---CC-ceEEEEeCcCCccc----HHHHHHHHHHHCCCEEEEe
Confidence 47889999997642 2222223333221 01 24567899996421 1233445556677765554
No 301
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=24.99 E-value=64 Score=24.91 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=36.5
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHH
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQ 99 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~ 99 (167)
.++|+| |.+|-|.. +++..+.+++.+++.+.++..+...+..+..+|..+
T Consensus 79 ~~~P~I-Iltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 79 PETPAI-IVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp TTCCCE-EECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEE-EEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 355655 45666653 456777888899999999998888888877766554
No 302
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=24.74 E-value=1.1e+02 Score=22.84 Aligned_cols=48 Identities=8% Similarity=-0.091 Sum_probs=31.0
Q ss_pred cccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCC
Q psy15004 6 ANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLV 57 (167)
Q Consensus 6 ~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~ 57 (167)
.....+|++|+|..... .+...+...++.+.... ...+-+|.|++|..
T Consensus 220 ~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g---~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 220 IVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG---IPVKGVILNSIFRR 267 (286)
T ss_dssp HHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT---CCCCEEEEEEECCC
T ss_pred HHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC---CCEEEEEEcCcccc
Confidence 34567999999998653 34555666666664431 22355778999864
No 303
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=24.56 E-value=1.1e+02 Score=21.10 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=27.1
Q ss_pred CCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 10 TPHGFIIVYSTIDLA-SFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~-s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
++|.+|+.=|+++.. ..+....+++.+... ++|+++|.---|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~----~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA----HLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG----CSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc----CCcEEEECCCCCc
Confidence 689999999998754 445455566666432 4566665433453
No 304
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=24.47 E-value=96 Score=18.81 Aligned_cols=41 Identities=10% Similarity=0.287 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
.|++|+=+...+.+.++ .+..++.....+.+|+|++....|
T Consensus 47 ~dlvi~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~ 87 (127)
T 2jba_A 47 PDLILLAWMLPGGSGIQ----FIKHLRRESMTRDIPVVMLTARGE 87 (127)
T ss_dssp CSEEEEESEETTEEHHH----HHHHHHTSTTTTTSCEEEEEETTH
T ss_pred CCEEEEecCCCCCCHHH----HHHHHHhCcccCCCCEEEEeCCCC
Confidence 56665544444444444 445554432235789888876544
No 305
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=24.21 E-value=60 Score=24.44 Aligned_cols=45 Identities=9% Similarity=-0.171 Sum_probs=27.8
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCce-EEEEEecCCCC
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-VILVANKTDLV 57 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~p-iilvgNK~Dl~ 57 (167)
...+|++|+|..... .+...+...++.+... +++ +-+|.|++|..
T Consensus 234 ~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 234 GRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA----GVNIKGAILNGVIKR 279 (299)
T ss_dssp GGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred HHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 356899999987643 3445555555565443 233 33677999854
No 306
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=24.02 E-value=1.4e+02 Score=18.62 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=21.4
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecC
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKT 54 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~ 54 (167)
.|++|+=+.+.+.+.++ ++..++.......+|+|++....
T Consensus 48 ~dlvi~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~ls~~~ 87 (138)
T 3c3m_A 48 PDLVLLDIMMEPMDGWE----TLERIKTDPATRDIPVLMLTAKP 87 (138)
T ss_dssp CSEEEEESCCSSSCHHH----HHHHHHHSTTTTTSCEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHcCcccCCCCEEEEECCC
Confidence 46665555444444544 34444433223568888877654
No 307
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=23.63 E-value=1.5e+02 Score=18.82 Aligned_cols=73 Identities=8% Similarity=0.142 Sum_probs=37.1
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v 89 (167)
.|++|+=+.+.+.+.++ ++..++.......+|+|++....|. +... .+...|+ .|+. ...+.
T Consensus 62 ~dlillD~~lp~~~g~~----l~~~l~~~~~~~~~piiils~~~~~--------~~~~-~~~~~ga~~~l~----KP~~~ 124 (149)
T 1i3c_A 62 PNLILLDLNLPKKDGRE----VLAEIKQNPDLKRIPVVVLTTSHNE--------DDVI-ASYELHVNCYLT----KSRNL 124 (149)
T ss_dssp CSEEEECSCCSSSCHHH----HHHHHHHCTTTTTSCEEEEESCCCH--------HHHH-HHHHTTCSEEEE----CCSSH
T ss_pred CCEEEEeCCCCCCcHHH----HHHHHHhCcCcCCCeEEEEECCCCh--------HHHH-HHHHcCCcEEEE----CCCCH
Confidence 56655544444444554 3444444322357899888776552 2222 2234565 4553 24566
Q ss_pred HHHHHHHHHHH
Q psy15004 90 DELLVGILTQI 100 (167)
Q Consensus 90 ~~lf~~l~~~i 100 (167)
+++...+-..+
T Consensus 125 ~~L~~~i~~~~ 135 (149)
T 1i3c_A 125 KDLFKMVQGIE 135 (149)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 308
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=23.63 E-value=44 Score=25.11 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=22.9
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.|..+|+.-|++..+-...+..+..+ .++|++.|++|.+|
T Consensus 147 KAkLVVIA~DadP~eivk~LpaLC~k-------~gVPy~~V~sK~eL 186 (256)
T 3izc_H 147 KAKLVLIANDVDPIELVVFLPALCKK-------MGVPYAIVKGKARL 186 (256)
T ss_dssp CCSEEEEESCCSSGGGTTHHHHHHHH-------HTCCEEEESCHHHH
T ss_pred cceEEEEeCCCChHHHHHHHHHHHHh-------cCCCEEEECCHHHH
Confidence 46677777776543222222222222 26888888888775
No 309
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=23.62 E-value=94 Score=24.03 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=29.5
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.|.+.|+||+..- .+++++...++..+.. ..++|||+.|--.-.
T Consensus 70 ~~~~~dG~VItHG---TDTmeeTA~~Ls~ll~---~~~kPVVlTGAqrP~ 113 (328)
T 1wls_A 70 EVWEYDGIVITHG---TDTMAYSASMLSFMLR---NPPIPIVLTGSMLPI 113 (328)
T ss_dssp HTTTCSEEEEECC---GGGHHHHHHHHHHHEE---SCSSEEEEECCSSCT
T ss_pred HhccCCeEEEEcC---CchHHHHHHHHHHHHh---CCCCCEEEECCCCCC
Confidence 4567888888864 3477777777774322 246788888876654
No 310
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=23.60 E-value=1e+02 Score=19.36 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=9.0
Q ss_pred cEEEEEEeCCCH
Q psy15004 12 HGFIIVYSTIDL 23 (167)
Q Consensus 12 d~~i~v~d~t~~ 23 (167)
-.+|++||+++.
T Consensus 3 M~~lV~YDI~~~ 14 (101)
T 2ivy_A 3 MLYLIFYDITDD 14 (101)
T ss_dssp EEEEEEEEECCH
T ss_pred EEEEEEEeCCCh
Confidence 357889998764
No 311
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=23.53 E-value=1.4e+02 Score=22.36 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCH
Q psy15004 10 TPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNV 89 (167)
Q Consensus 10 ~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v 89 (167)
.+|.+++|.|.+.. .+.......+... . + ..-+|.||.|.... ...+..+....+.++..++. |+++
T Consensus 210 ~~~~~~lv~~~~~~---~~~~~~~~~~~~~--~-~-i~givlnk~d~~~~----~g~~~~~~~~~~~pi~~i~~--g~~~ 276 (295)
T 1ls1_A 210 GPDEVLLVLDAMTG---QEALSVARAFDEK--V-G-VTGLVLTKLDGDAR----GGAALSARHVTGKPIYFAGV--SEKP 276 (295)
T ss_dssp CCSEEEEEEEGGGT---HHHHHHHHHHHHH--T-C-CCEEEEECGGGCSS----CHHHHHHHHHHCCCEEEEC-------
T ss_pred CCCEEEEEEeCCCc---HHHHHHHHHHhhc--C-C-CCEEEEECCCCCcc----HHHHHHHHHHHCcCEEEEeC--CCCc
Confidence 37788888887532 1111122222211 0 1 24467899996421 22344555667887766553 4444
Q ss_pred HH
Q psy15004 90 DE 91 (167)
Q Consensus 90 ~~ 91 (167)
++
T Consensus 277 ~d 278 (295)
T 1ls1_A 277 EG 278 (295)
T ss_dssp -C
T ss_pred cc
Confidence 43
No 312
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=23.53 E-value=1.8e+02 Score=19.74 Aligned_cols=73 Identities=10% Similarity=-0.090 Sum_probs=36.5
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHh---hCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWK---KDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~---~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+.++|++|+++-+-.-.-...++.|++.+.. .....+.|+.++++=-.......-.......+....|+.++.
T Consensus 69 l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~ 144 (200)
T 2a5l_A 69 LKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLG 144 (200)
T ss_dssp HHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEEC
Confidence 5679999998877442222334555555422 112346677777764332111111122344444556665543
No 313
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.72 E-value=1.4e+02 Score=18.38 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=38.8
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v 89 (167)
.|++|+=++..+.+.++ .+..++.......+|+|++....|. ... ..+...|+ .|+. .....
T Consensus 55 ~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~~--------~~~-~~~~~~g~~~~l~----kP~~~ 117 (143)
T 3cnb_A 55 PDVVMLDLMMVGMDGFS----ICHRIKSTPATANIIVIAMTGALTD--------DNV-SRIVALGAETCFG----KPLNF 117 (143)
T ss_dssp CSEEEEETTCTTSCHHH----HHHHHHTSTTTTTSEEEEEESSCCH--------HHH-HHHHHTTCSEEEE----SSCCH
T ss_pred CCEEEEecccCCCcHHH----HHHHHHhCccccCCcEEEEeCCCCH--------HHH-HHHHhcCCcEEEe----CCCCH
Confidence 46665555444444444 4455544223467899988776552 122 22334566 4443 24566
Q ss_pred HHHHHHHHHHHH
Q psy15004 90 DELLVGILTQIR 101 (167)
Q Consensus 90 ~~lf~~l~~~i~ 101 (167)
+++...+...+.
T Consensus 118 ~~l~~~i~~~~~ 129 (143)
T 3cnb_A 118 TLLEKTIKQLVE 129 (143)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776665555443
No 314
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=22.56 E-value=1.7e+02 Score=19.07 Aligned_cols=71 Identities=7% Similarity=0.081 Sum_probs=35.3
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v 89 (167)
.|.+|+=+..-+-+.++ .+..++......++|+|++-...+. +...-+.+.|+ .|+. .....
T Consensus 58 ~DlillD~~MP~mdG~e----l~~~ir~~~~~~~ipvI~lTa~~~~---------~~~~~~~~~Ga~~yl~----KP~~~ 120 (134)
T 3to5_A 58 FDFVVTDWNMPGMQGID----LLKNIRADEELKHLPVLMITAEAKR---------EQIIEAAQAGVNGYIV----KPFTA 120 (134)
T ss_dssp CSEEEEESCCSSSCHHH----HHHHHHHSTTTTTCCEEEEESSCCH---------HHHHHHHHTTCCEEEE----SSCCH
T ss_pred CCEEEEcCCCCCCCHHH----HHHHHHhCCCCCCCeEEEEECCCCH---------HHHHHHHHCCCCEEEE----CCCCH
Confidence 34444433333444555 3444544444567888877655441 12223345566 3442 34566
Q ss_pred HHHHHHHHH
Q psy15004 90 DELLVGILT 98 (167)
Q Consensus 90 ~~lf~~l~~ 98 (167)
+++...+.+
T Consensus 121 ~~L~~~i~~ 129 (134)
T 3to5_A 121 ATLKEKLDK 129 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 315
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=22.46 E-value=38 Score=25.14 Aligned_cols=53 Identities=6% Similarity=0.034 Sum_probs=29.6
Q ss_pred hhcccCCCcEEEEEEeCCCHHHHHHHHH---H-------------H---HHHHhhCCCCC-ceEEEEEecCCCC
Q psy15004 4 CIANYETPHGFIIVYSTIDLASFHVAEQ---C-------------L---QALWKKDSIRS-KAVILVANKTDLV 57 (167)
Q Consensus 4 ~~~y~~~ad~~i~v~d~t~~~s~~~~~~---~-------------~---~~l~~~~~~~~-~piilvgNK~Dl~ 57 (167)
+...+..+|.+|++...+ ..++..+.. + + .++.......+ .++.+|.|++|-.
T Consensus 119 ~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~ 191 (286)
T 2xj4_A 119 TRMAHGRADLVVTPMNDS-FVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATT 191 (286)
T ss_dssp HHHHHHTCSEEEEEEESS-HHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTC
T ss_pred HHHHHHHCCEEEEEEcCC-ccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCC
Confidence 344567789999999864 333332211 1 2 22221101234 6788999999854
No 316
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=22.39 E-value=16 Score=25.01 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=28.9
Q ss_pred CCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy15004 43 RSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRL 102 (167)
Q Consensus 43 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~~~~v~~lf~~l~~~i~~ 102 (167)
.++|++.+.+|.+| +...........+-+-...+.++.+.++.+...|..
T Consensus 92 ~~VP~~~v~sk~eL----------G~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i~~ 141 (144)
T 2jnb_A 92 KNVPYVFVRSKQAL----------GRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIER 141 (144)
T ss_dssp GCCCCEEESCSHHH----------HHHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHH
T ss_pred hCCCEEEECCHHHH----------HHHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 47898888877664 232323333323333333445677777777776653
No 317
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.20 E-value=1.4e+02 Score=18.13 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=36.0
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCC-eEEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~~~~v 89 (167)
.|++|+=+.+.+.+.++ ++..++.....+++|+|++....+. +....+...|+ .|+. ...+.
T Consensus 47 ~dlvllD~~~p~~~g~~----~~~~l~~~~~~~~~pii~~s~~~~~---------~~~~~~~~~Ga~~~l~----KP~~~ 109 (122)
T 3gl9_A 47 PDLIVLXIMMPVMDGFT----VLKKLQEKEEWKRIPVIVLTAKGGE---------EDESLALSLGARKVMR----KPFSP 109 (122)
T ss_dssp CSEEEECSCCSSSCHHH----HHHHHHTSTTTTTSCEEEEESCCSH---------HHHHHHHHTTCSEEEE----SSCCH
T ss_pred CCEEEEeccCCCCcHHH----HHHHHHhcccccCCCEEEEecCCch---------HHHHHHHhcChhhhcc----CCCCH
Confidence 46555544444444544 4445544333457888887765441 12223345566 4443 34566
Q ss_pred HHHHHHHHH
Q psy15004 90 DELLVGILT 98 (167)
Q Consensus 90 ~~lf~~l~~ 98 (167)
+++...+.+
T Consensus 110 ~~L~~~i~~ 118 (122)
T 3gl9_A 110 SQFIEEVKH 118 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655544
No 318
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=22.13 E-value=1.9e+02 Score=19.62 Aligned_cols=73 Identities=14% Similarity=0.021 Sum_probs=36.8
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHH---hhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALW---KKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~---~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+.++|++|+.+-+-.-.-...++.|++.+. ......+.|++++++=-...............+....|+.++.
T Consensus 68 l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 68 MRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 457999999887644222233455655542 1112346677777664332111111223444455556665543
No 319
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=27.43 E-value=19 Score=25.58 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhC--CCCCceEEEEEe
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKD--SIRSKAVILVAN 52 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~--~~~~~piilvgN 52 (167)
-+..||++|++.-+=+-.---.++.|++.+.... ...+.|+.++++
T Consensus 70 ~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~t 117 (199)
T 3s2y_A 70 QIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTA 117 (199)
Confidence 3557888888765533211122344554442210 123556666554
No 320
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=21.68 E-value=91 Score=24.48 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=25.7
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL 56 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl 56 (167)
.|.+.|+||+.-- | +++++...++..+... .++|||+.|--.-.
T Consensus 98 ~~~~~dG~VItHG-T--DTmeeTA~~Ls~~l~~---~~kPVVlTGAmrP~ 141 (358)
T 2him_A 98 HYDDYDGFVILHG-T--DTMAYTASALSFMLEN---LGKPVIVTGSQIPL 141 (358)
T ss_dssp HGGGCSEEEEECC-S--TTHHHHHHHHHHHEET---CCSCEEEECCSSCT
T ss_pred HHhcCCeEEEecC-c--hHHHHHHHHHHHHHhc---CCCCEEEeCCCCCC
Confidence 3446777777754 2 3566656566655321 35677777766544
No 321
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=21.56 E-value=1.1e+02 Score=20.81 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=28.2
Q ss_pred ccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecC
Q psy15004 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKT 54 (167)
Q Consensus 7 y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~ 54 (167)
-+.+.|.+|+.+-+-.-.-...+..|++.+ ...+.+++++++-.
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g 127 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSG 127 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECS
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecC
Confidence 356789999999874422223455666655 23567788877764
No 322
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=21.21 E-value=2e+02 Score=19.78 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=36.6
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHh---hCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCeEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWK---KDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE 80 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~---~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 80 (167)
+.++|++|+.+-+-.-.-...++.|++.+.. .....+.|++++++=-.-.............+....|+.++.
T Consensus 76 l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 76 LEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 5579999998776432112334556665431 112346677776664322111111223444555566665543
No 323
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=20.96 E-value=1.2e+02 Score=19.42 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=21.3
Q ss_pred cCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEE
Q psy15004 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVA 51 (167)
Q Consensus 8 ~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvg 51 (167)
++++|++|++.+..... ..|...-.......++|+|.|-
T Consensus 36 I~~~~~vIvL~G~~t~~-----s~wv~~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 36 PEDADAVIVLAGLWGTR-----RDEILGAVDLARKSSKPIITVR 74 (111)
T ss_dssp SSSCSEEEEEGGGTTTS-----HHHHHHHHHHHTTTTCCEEEEC
T ss_pred cccCCEEEEEeCCCcCC-----ChHHHHHHHHHHHcCCCEEEEE
Confidence 57889999888764322 1233221111123578877763
No 324
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=20.66 E-value=1.1e+02 Score=20.92 Aligned_cols=43 Identities=5% Similarity=-0.087 Sum_probs=26.6
Q ss_pred hcccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 5 IANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 5 ~~y~~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
...+++||++|..+|.-|..+--++- | ... .++|++++.+..+
T Consensus 72 ~~~i~~aD~vva~~~~~d~Gt~~EiG-y---A~a----lgKPVi~l~~~~~ 114 (165)
T 2khz_A 72 LNWLQQADVVVAEVTQPSLGVGYELG-R---AVA----LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHH-H---HHH----TCSSEEEEECTTT
T ss_pred HHHHHhCCEEEEECCCCCCCHHHHHH-H---HHH----CCCEEEEEEcCCC
Confidence 34577899999998855544322221 1 111 3789999876664
No 325
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=20.55 E-value=1.4e+02 Score=23.43 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhCCCCCceEEEE-Eec
Q psy15004 9 ETPHGFIIVYSTID---LASFHVAEQCLQALWKKDSIRSKAVILV-ANK 53 (167)
Q Consensus 9 ~~ad~~i~v~d~t~---~~s~~~~~~~~~~l~~~~~~~~~piilv-gNK 53 (167)
.++|.+|+.=|+++ +..++.+..++..+.. .++|+++| ||-
T Consensus 91 ~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~----~~~~~~~v~GNH 135 (443)
T 2xmo_A 91 KKTDVLIISGDLTNNGEKTSHEELAKKLTQVEK----NGTQVFVVPGNH 135 (443)
T ss_dssp HTCSEEEEESCCBSSCCHHHHHHHHHHHHHHHH----TTCEEEEECCTT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEECCcC
Confidence 35799999999876 3345555555665532 25787777 665
No 326
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=20.17 E-value=1.1e+02 Score=23.79 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=19.7
Q ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCC
Q psy15004 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTD 55 (167)
Q Consensus 9 ~~ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~D 55 (167)
.+.|+||+..-. +++++...++..+. ..++|||+.|--.-
T Consensus 89 ~~~dGvVItHGT---DTm~~TA~~L~~~l----~~~kPVVlTGa~rp 128 (337)
T 4pga_A 89 NDVDGIVITHGT---DTLEETAYFLNLVQ----KTDKPIVVVGSMRP 128 (337)
T ss_dssp TTCSEEEEECCS---TTHHHHHHHHHHHC----CCCSCEEEECCSSC
T ss_pred cCCCeEEEECCC---ccHHHHHHHHHHHc----CCCCCEEEeCCCCC
Confidence 455666655432 24444444554442 12456666655443
No 327
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.14 E-value=1.6e+02 Score=18.06 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=36.7
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCccccChhHHHHHHHhcCCe-EEEEecCCCCCH
Q psy15004 11 PHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCK-FIETSVGINHNV 89 (167)
Q Consensus 11 ad~~i~v~d~t~~~s~~~~~~~~~~l~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~~~~v 89 (167)
.|++|+=++..+.+.++ ++..++.. .+.+|+|++....|. +.. ..+...|+. |+. .....
T Consensus 52 ~dlvi~d~~l~~~~g~~----~~~~l~~~--~~~~~ii~~s~~~~~--------~~~-~~~~~~g~~~~l~----kP~~~ 112 (137)
T 3hdg_A 52 PDVIITDIRMPKLGGLE----MLDRIKAG--GAKPYVIVISAFSEM--------KYF-IKAIELGVHLFLP----KPIEP 112 (137)
T ss_dssp CSEEEECSSCSSSCHHH----HHHHHHHT--TCCCEEEECCCCCCH--------HHH-HHHHHHCCSEECC----SSCCH
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhc--CCCCcEEEEecCcCh--------HHH-HHHHhCCcceeEc----CCCCH
Confidence 56666555555544444 44445433 256788877665441 122 223344553 432 34566
Q ss_pred HHHHHHHHHHHHh
Q psy15004 90 DELLVGILTQIRL 102 (167)
Q Consensus 90 ~~lf~~l~~~i~~ 102 (167)
+++...+-+.+..
T Consensus 113 ~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 113 GRLMETLEDFRHI 125 (137)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655554443
Done!