RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15004
(167 letters)
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 106 bits (267), Expect = 1e-29
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 10/107 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ ++IVYS D ASF A + + R++ +ILV NK+DLVRCR V
Sbjct: 109 MQVGDAYLIVYSITDRASFEKASE-----LRIQLRRARQTEDIPIILVGNKSDLVRCREV 163
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPE 109
+ +G+ A +DCKFIETS + HNV EL GI+ Q+RL+ D+ +
Sbjct: 164 SVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 103 bits (260), Expect = 6e-29
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ ++IVYS D SF A + + R+ +ILV NK DL RCR V
Sbjct: 75 LQGGSAYVIVYSIADRGSFESASE-----LRIQLRRTHQADHVPIILVGNKADLARCREV 129
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
+ E+G+ A +DCKFIETS + HNV EL G++ Q+RL+ +
Sbjct: 130 SVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 99.9 bits (250), Expect = 2e-27
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+T F+IV+S D SF + + VILV NK+DL R R V
Sbjct: 73 LQTGDAFLIVFSVTDRRSFSKVPE-----TLLRLRAGRPHHDLPVILVGNKSDLARSREV 127
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ E+G+ +A CK IETS ++HN EL G + QIRL+
Sbjct: 128 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 99.5 bits (249), Expect = 3e-27
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
++IVYS D SF A + + R++ +ILV NK+DLVR R V
Sbjct: 70 MAMGDAYVIVYSVTDKGSFEKASE-----LRVQLRRARQTDDVPIILVGNKSDLVRSREV 124
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ ++G+ A +DCKFIETS ++HNV L G++ QIRL+
Sbjct: 125 SVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 99.2 bits (248), Expect = 6e-27
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+T F+IV+S D SF + + VILV NK+DL R R V
Sbjct: 94 LQTGDAFLIVFSVTDRRSFSKVPE-----TLLRLRAGRPHHDLPVILVGNKSDLARSREV 148
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
+ E+G+ +A CK IETS ++HN EL G + QIRL+
Sbjct: 149 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGR 192
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 98.5 bits (246), Expect = 1e-26
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 12/122 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ ++IVYS D ASF A + + R++ +ILV NK+DLVR R V
Sbjct: 78 MQVGDAYLIVYSITDRASFEKASE-----LRIQLRRARQTEDIPIILVGNKSDLVRXREV 132
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRRR 122
+ +G+ A +D KFIETS + HNV EL GI+ Q+RL+ D+ + R +R+
Sbjct: 133 SVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKN--ERRLAYQKRK 190
Query: 123 RS 124
S
Sbjct: 191 ES 192
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 95.8 bits (239), Expect = 2e-25
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ + GF+ V+S ++ SF +++ +R K +LV NK+DL R V
Sbjct: 83 FRSGEGFLCVFSITEMESFAATAD-----FREQILRVKEDENVPFLLVGNKSDLEDKRQV 137
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRRR 122
+ E+ K+ A ++ ++ETS NVD++ ++ +IR + + +++ +
Sbjct: 138 SVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAK 197
Query: 123 RSKS 126
R +
Sbjct: 198 RIRE 201
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 92.6 bits (231), Expect = 2e-24
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQ--ALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
H F++VYS SF + L+ AL K++ RS +L+ NK D+ + R VT +G
Sbjct: 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVA 152
Query: 70 MATAYDCKFIETSVGIN-HNVDELLVGILTQIR 101
+A + C F E S ++ +V + + + R
Sbjct: 153 LAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 91.4 bits (228), Expect = 4e-24
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 8 YETPHGFIIVYSTIDLASFHVA----EQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
H FI+VYS S EQ + +SI ++LV NK D R V
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESI---PIMLVGNKCDESPSREVQ 128
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ + +A + C F+ETS +NHNV EL +L + +
Sbjct: 129 SSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 90.6 bits (226), Expect = 7e-24
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ + GF+ V+S ++ SF +++ +R K +LV NK+DL R V
Sbjct: 73 FRSGEGFLCVFSITEMESFAATAD-----FREQILRVKEDENVPFLLVGNKSDLEDKRQV 127
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ E+ K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 128 SVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 90.7 bits (226), Expect = 1e-23
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ + GF+ V+S ++ SF +++ +R K +LV NK+DL R V
Sbjct: 87 FRSGEGFLCVFSITEMESFAATAD-----FREQILRVKEDENVPFLLVGNKSDLEDKRQV 141
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ E+ K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 142 SVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 91.1 bits (227), Expect = 1e-23
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCL-QALWKKDSIRSKAVILVANKTDLVRCRVVTDED 66
H FI+V+S S + K S+ V+LV NK D + R V +
Sbjct: 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTRE 135
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRRRRSK 125
+ +A + C F+ETS +N+NV EL +LT + + + R
Sbjct: 136 AQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKG 194
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 89.1 bits (222), Expect = 4e-23
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
HGF++V++ D SF+ + +R K V+LV NK DL R V
Sbjct: 78 MRAGHGFLLVFAINDRQSFNEVGK-----LFTQILRVKDRDDFPVVLVGNKADLESQRQV 132
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
+ ++ + E S + NVDE ++ +R + P
Sbjct: 133 PRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPP 180
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 89.6 bits (223), Expect = 4e-23
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
GF++VY D SF K K +ILV NK DL R V
Sbjct: 96 MRWGEGFVLVYDITDRGSFEEVLP-----LKNILDEIKKPKNVTLILVGNKADLDHSRQV 150
Query: 63 TDEDGKDMATAYDCKFIETSVGINH-NVDELLVGILTQIRLK 103
+ E+G+ +AT C F E S N+ E+ + ++R +
Sbjct: 151 STEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 88.3 bits (220), Expect = 5e-23
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ GFI+VYS ++ SF + + IR K VILV NK DL R V
Sbjct: 72 IKNGQGFILVYSLVNQQSFQDIKP-----MRDQIIRVKRYEKVPVILVGNKVDLESEREV 126
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+ +G+ +A + C F+ETS VDEL I+ Q+
Sbjct: 127 SSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 88.0 bits (219), Expect = 9e-23
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+G+I+VYS + SF V + + ++LV NK DL RV+
Sbjct: 75 SIDINGYILVYSVTSIKSFEVIKV-----IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPE 109
+ E+GK +A +++ F+E+S N ++ I+ + +
Sbjct: 130 SYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQ 176
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 88.4 bits (220), Expect = 1e-22
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
HG+++VYS L SF V E + V+LV NK DL R V
Sbjct: 93 IIGVHGYVLVYSVTSLHSFQVIES-----LYQKLHEGHGKTRVPVVLVGNKADLSPEREV 147
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
+GK +A ++ F+E+S N + ++ +I +++N
Sbjct: 148 QAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA-RVENSYGQ 194
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 83.0 bits (206), Expect = 8e-21
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
T GF+IVYS D ASF ++ + + +R K +ILVANK DL+ R V
Sbjct: 87 MRTGDGFLIVYSVTDKASFEHVDR-----FHQLILRVKDRESFPMILVANKVDLMHLRKV 141
Query: 63 TDEDGKDMATAYDCKFIETSVGINH-NVDELLVGILTQIR 101
T + GK+MAT Y+ +IETS NVD+ ++ IR
Sbjct: 142 TRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 81.5 bits (202), Expect = 4e-20
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
T GF+ V++ + SF +++ R K ++LV NK DL R V
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHH-----YREQIKRVKDSEDVPMVLVGNKCDLPS-RTV 126
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRR 121
+ +D+A +Y FIETS VD+ ++ +IR + + +++ S +
Sbjct: 127 DTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTK 185
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 80.6 bits (200), Expect = 5e-20
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
+ GF +VYS ++F+ + ++ +R K +ILV NK DL RVV
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQD-----LREQILRVKDTEDVPMILVGNKCDLEDERVV 126
Query: 63 TDEDGKDMATAY-DCKFIETSVGINHNVDELLVGILTQIR 101
E G+++A + +C F+E+S NV+E+ ++ QI
Sbjct: 127 GKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 80.6 bits (200), Expect = 6e-20
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
T GF+ V++ + SF Q +++ R K ++LV NK+DL R V
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQ-----YREQIKRVKDSDDVPMVLVGNKSDLAA-RTV 125
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+D+A +Y +IETS V++ ++ +IR
Sbjct: 126 ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 79.2 bits (196), Expect = 4e-19
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVV 62
T GF+ V++ + SF +++ R K ++LV NK DL R V
Sbjct: 90 MRTGEGFLCVFAINNSKSFADINL-----YREQIKRVKDSDDVPMVLVGNKCDLPT-RTV 143
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+ ++A +Y FIETS V++ ++ +IR
Sbjct: 144 DTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 73.7 bits (182), Expect = 3e-17
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRC--RVVTD 64
+ V+S D SF + + ++LV + + RV+ D
Sbjct: 87 DAVVFVFSLEDEISFQTVYN-----YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDD 141
Query: 65 EDGKDMATAY-DCKFIETSVGINHNVDELLVGILTQIR 101
+ ++T C + ET NV+ + + ++
Sbjct: 142 SRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 73.4 bits (181), Expect = 4e-17
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G ++VY + SF ++ W ++ I A +++ NK D+ R V+ E
Sbjct: 82 MGIMLVYDITNEKSFDNIRN------WIRN-IEEHASADVEKMILGNKCDVNDKRQVSKE 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
G+ +A Y KF+ETS N NV+ + I+ K+D +
Sbjct: 135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKA 179
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 72.6 bits (179), Expect = 8e-17
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
H +++Y + ASF ++ W + I A ++L+ NK D RVV E
Sbjct: 85 HALLLLYDVTNKASFDNIQA------WLTE-IHEYAQHDVALMLLGNKVDSAHERVVKRE 137
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
DG+ +A Y F+ETS NVD I +++ + P
Sbjct: 138 DGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 71.9 bits (177), Expect = 2e-16
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA------VILVANKTDLVRCRVVTD 64
GF++++ + SF +V W ++ A ++L NK+DL R V +
Sbjct: 95 MGFLLLFDLTNEQSFLNVRN------WISQ-LQMHAYSENPDIVLCGNKSDLEDQRAVKE 147
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
E+ +++A Y + ETS N+ + +L I +++ +
Sbjct: 148 EEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDK 193
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 71.4 bits (176), Expect = 2e-16
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDLVRCRVVTDEDG 67
++V+ST D SF W++ + ++ LV NK DL+ + +E+
Sbjct: 79 QACVLVFSTTDRESFEAISS-----WREK-VVAEVGDIPTALVQNKIDLLDDSCIKNEEA 132
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ +A +F TSV + NV E+ + + K
Sbjct: 133 EGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 72.0 bits (177), Expect = 3e-16
Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 11/140 (7%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
G +IVY +S+ W + +R A V L+ NK+DL R V E+
Sbjct: 87 VGALIVYDISKSSSYENCNH-----WLSE-LRENADDNVAVGLIGNKSDLAHLRAVPTEE 140
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRRRRSKS 126
K A F ETS + NVD+ ++ I K+ + S
Sbjct: 141 SKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAP 200
Query: 127 PGGFRKLRGHRTSASLKVKG 146
G L
Sbjct: 201 NGPTISLTPTPNENKKANGN 220
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 71.6 bits (176), Expect = 3e-16
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA------VILVANKTDLVRCRVVTD 64
GF++++ SF +V W +++ A ++L+ NK DL R V +
Sbjct: 109 MGFLLMFDLTSQQSFLNVRN------WMSQ-LQANAYCENPDIVLIGNKADLPDQREVNE 161
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
+++A Y + ETS NV++ + +L I +++ E
Sbjct: 162 RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEK 207
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 71.1 bits (175), Expect = 3e-16
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
GFI++Y + SF V + W I++ + VILV NK D+ RVV E
Sbjct: 97 MGFILMYDITNEESFNAVQD------WATQ-IKTYSWDNAQVILVGNKCDMEEERVVPTE 149
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
G+ +A F E S N +V + ++ I K+ +
Sbjct: 150 KGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 71.1 bits (175), Expect = 4e-16
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
GF+++Y + SF V + W I++ + VILV NK DL RVV E
Sbjct: 96 MGFLLMYDIANQESFAAVQD------WATQ-IKTYSWDNAQVILVGNKCDLEDERVVPAE 148
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
DG+ +A +F E S N NV ++ ++ I K++
Sbjct: 149 DGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 70.6 bits (174), Expect = 4e-16
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
+G I+VY D SF + W K+ +R + +V NK DL + R V+ ++
Sbjct: 80 NGAILVYDITDEDSFQKVKN-----WVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQE 133
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ A + K TS N ++EL + + ++
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 70.7 bits (174), Expect = 4e-16
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
++VY + SFH + W D +R++ ++LV NKTDL R V+ E+
Sbjct: 88 TVAVVVYDITNTNSFHQTSK-----WIDD-VRTERGSDVIIMLVGNKTDLSDKRQVSTEE 141
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
G+ A + FIETS +NV +L + +
Sbjct: 142 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 70.7 bits (174), Expect = 6e-16
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
HG I+VY D SF +V + W ++ I A +LV NK DL +VV
Sbjct: 90 HGIIVVYDVTDQESFNNVKQ------WLQE-IDRYASENVNKLLVGNKCDLTTKKVVDYT 142
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 143 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 187
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 69.9 bits (172), Expect = 8e-16
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G ++VY ++ + W D R A +IL NK DL R VT
Sbjct: 84 AGALLVYDITSRETYNALTN------WLTD-ARMLASQNIVIILCGNKKDLDADREVTFL 136
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
+ A + F+ETS NV+E V +I K+++
Sbjct: 137 EASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 70.4 bits (173), Expect = 9e-16
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
HG I+VY D SF +V + W ++ I A +LV NK DL +VV
Sbjct: 107 HGIIVVYDVTDQESFNNVKQ------WLQE-IDRYASENVNKLLVGNKCDLTTKKVVDYT 159
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
K+ A + F+ETS NV++ + + +I+ ++
Sbjct: 160 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 69.9 bits (172), Expect = 9e-16
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA----VILVANKTDLVRCRVVTDED 66
HG I+VY SF +V W + I ILV NK D +VV ED
Sbjct: 83 HGVIVVYDVTSAESFVNVKR------WLHE-INQNCDDVCRILVGNKNDDPERKVVETED 135
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
A + ETS N NV+E+ I + +
Sbjct: 136 AYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 70.0 bits (172), Expect = 1e-15
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
GFI++Y + SF V + W I++ + V+LV NK D+ RVV+ E
Sbjct: 82 MGFILMYDITNEESFNAVQD------WSTQ-IKTYSWDNAQVLLVGNKCDMEDERVVSSE 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
G+ +A +F E S N NV + ++ I K+ +
Sbjct: 135 RGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 70.0 bits (172), Expect = 1e-15
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
++VY ++ SF + W D +R++ ++LV NKTDL R V+ E+
Sbjct: 90 TVAVVVYDITNVNSFQQTTK-----WIDD-VRTERGSDVIIMLVGNKTDLADKRQVSIEE 143
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
G+ A + FIETS +NV +L + +
Sbjct: 144 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 69.5 bits (171), Expect = 1e-15
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G ++VY +F H+ W +D R + ++L+ NK+DL R V E
Sbjct: 95 AGALLVYDITRRETFNHLTS------WLED-ARQHSSSNMVIMLIGNKSDLESRRDVKRE 147
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
+G+ A + F+ETS NV+E + +I K+
Sbjct: 148 EGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 69.1 bits (170), Expect = 2e-15
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
IIVY +F + W ++ +R V + NK DL R V + D
Sbjct: 80 AAAIIVYDITKEETFSTLKN-----WVRE-LRQHGPPSIVVAIAGNKCDLTDVREVMERD 133
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
KD A + F+ETS N++EL + I +I
Sbjct: 134 AKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 69.6 bits (171), Expect = 2e-15
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
+ I+ Y SF + W ++ I A +LV NK DL R V+ +
Sbjct: 100 NALILTYDITCEESFRCLPE-----WLRE-IEQYASNKVITVLVGNKIDLAERREVSQQR 153
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
++ + A D ++ETS + NV++L + + ++ +
Sbjct: 154 AEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 69.6 bits (171), Expect = 2e-15
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G ++VY ++ +A W D R+ A VIL NK DL R VT
Sbjct: 99 AGALLVYDITSRETYNSLAA------WLTD-ARTLASPNIVVILCGNKKDLDPEREVTFL 151
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
+ A + F+ETS NV+E + I K+D+
Sbjct: 152 EASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 69.6 bits (171), Expect = 2e-15
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
HG IIVY D SF V W ++ I A +LV NK DL RVV +
Sbjct: 82 HGIIIVYDVTDQESFNGVKM------WLQE-IDRYATSTVLKLLVGNKCDLKDKRVVEYD 134
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
K+ A A F+ETS + NV++ + + QI+ +
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 69.2 bits (170), Expect = 2e-15
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
+IVY SF+ ++ W K+ ++ + + NK DL R V +D
Sbjct: 97 AAAVIVYDITKQDSFYTLKK-----WVKE-LKEHGPENIVMAIAGNKCDLSDIREVPLKD 150
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
K+ A + +ETS N++EL GI QI
Sbjct: 151 AKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 68.3 bits (168), Expect = 3e-15
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G I+VY D +F ++ + W K + A ++LV NK+D+ RVVT +
Sbjct: 77 MGIILVYDITDERTFTNIKQ------WFKT-VNEHANDEAQLLLVGNKSDMET-RVVTAD 128
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
G+ +A FIE+S + NV+E+ + I+ K+D+
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 68.9 bits (169), Expect = 3e-15
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
G ++VY ++ E+ W K+ +R A ++LV NK+DL R V ++
Sbjct: 79 VGALLVYDIAKHLTYENVER-----WLKE-LRDHADSNIVIMLVGNKSDLRHLRAVPTDE 132
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
+ A + FIETS + NV+E ILT+I +
Sbjct: 133 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 68.4 bits (168), Expect = 4e-15
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
G ++V+ ++ V E+ W K+ + A V+LV NK+DL + R V E+
Sbjct: 99 VGALLVFDLTKHQTYAVVER-----WLKE-LYDHAEATIVVMLVGNKSDLSQAREVPTEE 152
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ A F+ETS + NV+ +L +I K+
Sbjct: 153 ARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 67.9 bits (167), Expect = 4e-15
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
I+VY + SF A+ W K+ ++ +A + L NK DL R V ++
Sbjct: 80 QAAIVVYDITNEESFARAKN-----WVKE-LQRQASPNIVIALSGNKADLANKRAVDFQE 133
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ A F+ETS + NV+E+ + I ++
Sbjct: 134 AQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 67.9 bits (167), Expect = 5e-15
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
IIV+ + ASF A++ W ++ ++++ + L NK+DL+ R VT ED
Sbjct: 86 AAAIIVFDVTNQASFERAKK-----WVQE-LQAQGNPNMVMALAGNKSDLLDARKVTAED 139
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ A F+ETS NV E+ I ++
Sbjct: 140 AQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 68.0 bits (167), Expect = 5e-15
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
G ++VY ++ E+ W K+ +R A ++LV NK+DL R V ++
Sbjct: 103 VGALLVYDIAKHLTYENVER-----WLKE-LRDHADSNIVIMLVGNKSDLRHLRAVPTDE 156
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ A FIETS + NV+ ILT+I
Sbjct: 157 ARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 68.1 bits (167), Expect = 7e-15
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
+G I+ Y +SF V W +D +R A +L+ NK+DL R V+
Sbjct: 103 NGAILAYDITKRSSFLSVPH------WIED-VRKYAGSNIVQLLIGNKSDLSELREVSLA 155
Query: 66 DGKDMATAYDCK-FIETSVGINHNVDELLVGILTQIRLKLDNP 107
+ + +A YD IETS + NV+E + + T++ ++ P
Sbjct: 156 EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 67.9 bits (166), Expect = 7e-15
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+V+ + + A+ + L + +ILVANK D + V +
Sbjct: 114 YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY---IIILVANKIDKNK-FQVDILEV 169
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
+ A + FI+TS N+ + + +I + N
Sbjct: 170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 67.2 bits (165), Expect = 8e-15
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQAL--WKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
G ++VY + SF E + ++S V LV NK DL R + E
Sbjct: 81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLR 140
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQI 100
S +V + +I
Sbjct: 141 FCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 67.7 bits (166), Expect = 9e-15
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G I+VY D +F ++ + W K + A ++LV NK+D+ RVVT +
Sbjct: 94 MGIILVYDVTDERTFTNIKQ------WFKT-VNEHANDEAQLLLVGNKSDMET-RVVTAD 145
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
G+ +A FIE+S + NV+E+ + I+ K+D+
Sbjct: 146 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLV 190
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 66.8 bits (164), Expect = 1e-14
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G ++VY +++ H++ W D R+ +IL+ NK DL R VT E
Sbjct: 89 AGALMVYDITRRSTYNHLSS------WLTD-ARNLTNPNTVIILIGNKADLEAQRDVTYE 141
Query: 66 DGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ K A F+E S NV++ + +I
Sbjct: 142 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 66.1 bits (162), Expect = 3e-14
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRC------ 59
G +++Y SF ++ E W I A ++LV NK D+
Sbjct: 102 DGVLLLYDVTCEKSFLNIRE------WVDM-IEDAAHETVPIMLVGNKADIRDTAATEGQ 154
Query: 60 RVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ V G+ +A Y F ETS N+ E ++ + +++ +
Sbjct: 155 KCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 66.1 bits (162), Expect = 3e-14
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA------VILVANKTDLVRCRVVTD 64
H + VY ++ASF + W ++ + ILV NK DL V
Sbjct: 95 HAVVFVYDMTNMASFHSLPA------WIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPT 147
Query: 65 EDGKDMATAYDCKFIETS---VGINHNVDELLVGILTQI 100
+ + A + ETS N +V+ + + + ++
Sbjct: 148 DLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 65.4 bits (160), Expect = 6e-14
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
G I+VY +F + L L + +LV NK D R V +G A
Sbjct: 89 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFA 147
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQI 100
+ FIE S V ++ +I
Sbjct: 148 RKHSMLFIEASAKTCDGVQCAFEELVEKI 176
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 64.6 bits (158), Expect = 1e-13
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 12 HGFIIVYSTIDLASF-HVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDE 65
G I+VY +F + + W K I A ++LV NK D R +T +
Sbjct: 100 KGIILVYDITKKETFDDLPK------WMKM-IDKYASEDAELLLVGNKLDCETDREITRQ 152
Query: 66 DGKDMATAYD-CKFIETSVGINHNVDELLVGILTQIRLKL 104
G+ A +F E S N NVDE+ + ++ I K+
Sbjct: 153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 63.8 bits (156), Expect = 2e-13
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 8 YETPHGFIIVYSTIDLASFHVA----EQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
I V+S D SF Q + + A++ ++ RVV
Sbjct: 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG 129
Query: 64 DEDGKDM-ATAYDCKFIETSVGINHNVDELLVGILTQIR 101
D + + A C + ET NVD + + ++
Sbjct: 130 DARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 62.7 bits (153), Expect = 6e-13
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAV--ILVANKTDLVRCR-VVTD 64
+ + I+V+ + SF + + L R + + +LVANKTDL R V
Sbjct: 94 WNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRL 153
Query: 65 EDGKDMATAYDCKFIETSVGI-NHNVDELLVGILTQI 100
+ +D AT F + S + D + I T
Sbjct: 154 DMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 60.8 bits (147), Expect = 5e-12
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 12 HGFIIVY--STIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKD 69
GF++ S +F + + L+ + + K +++V K D R + D
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223
Query: 70 MATAYDCKFIETSVGINHNVDELLVGILTQIR 101
++ + + +ETS N NVD ++ I
Sbjct: 224 LSK-KNLQVVETSARSNVNVDLAFSTLVQLID 254
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 60.0 bits (146), Expect = 8e-12
Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA-----VILVANKTDLVRCRVVTDED 66
G I+ + + + W K+ ++ +++ ANK D+ + ++ +
Sbjct: 86 SGAILFFDVTSRITCQNLAR-----WVKE-FQAVVGNEAPIVVCANKIDIKNRQKISKKL 139
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
++ + ++ E S HN + + + D
Sbjct: 140 VMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 59.2 bits (144), Expect = 2e-11
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA---------VILVANKTDLVRCRVV 62
++V+ +F + W+ + +A +++ NK DL +V
Sbjct: 82 DCCVLVFDVTAPNTFKTLDS-----WRDE-FLIQASPRDPENFPFVVLGNKIDLENRQVA 135
Query: 63 TDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
T + + + ETS NV++ I
Sbjct: 136 TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 57.6 bits (140), Expect = 4e-11
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA---------VILVANKTDLV-RCRV 61
++VY + +SF + W+ + A +++ NK D ++
Sbjct: 83 DCCVLVYDVTNASSFENIKS-----WRDE-FLVHANVNSPETFPFVILGNKIDAEESKKI 136
Query: 62 VTDEDGKDMATAY-DCKFIETSVGINHNVDELLVGILTQI 100
V+++ +++A + D TS NVD I
Sbjct: 137 VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 54.8 bits (132), Expect = 3e-10
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTD 64
Y ++VY SF A ++ L + + + + LV NK D ++ R V
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDXLQEGGERKVAR 131
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
E+G+ +A F ETS NV+++ +GI +I LK
Sbjct: 132 EEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 54.1 bits (131), Expect = 6e-10
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 17/99 (17%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA---------VILVANKTDLVRCRVV 62
++ +S D SF WKK+ A +++ NK D+ R V
Sbjct: 81 DCCLLTFSVDDSQSFQNLSN-----WKKE-FIYYADVKEPESFPFVILGNKIDISE-RQV 133
Query: 63 TDEDGKDMATAY-DCKFIETSVGINHNVDELLVGILTQI 100
+ E+ + D + ETS NV + ++
Sbjct: 134 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 55.4 bits (133), Expect = 1e-09
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDLVRCRVVTDEDG 67
++++ D + W + I VI+V NK D + +
Sbjct: 123 SVYMLLL---DSRTDSNKHY-----WLRH-IEKYGGKSPVIVVMNKIDENPSYNIEQKKI 173
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPV 111
+ A + +F S V+ + + + + P+
Sbjct: 174 NERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPL 217
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 52.7 bits (127), Expect = 4e-09
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDLVRCRVVTDEDG 67
II++ ++ W +D + ++L NK D+ +V
Sbjct: 89 QCAIIMFDVTSRVTYKNVPN-----WHRD-LVRVCENIPIVLCGNKVDIKDRKVK--AKS 140
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI--RLKLDNPPEPVL 112
+ ++ + S N+N ++ + + ++ L+ P L
Sbjct: 141 IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 50.4 bits (121), Expect = 2e-08
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDLV--RCRV 61
Y ++ ++ + SF + W+ + I+ +LV K DL
Sbjct: 92 YADSDVVLLCFAVNNRTSF----DNISTKWEPE-IKHYIDTAKTVLVGLKVDLRKDGSDD 146
Query: 62 VTDEDGKDMATAYDC-KFIETSVGINHNVDELLVGILTQIRLKLDNPPEP 110
VT ++G D+ C +IE S ++E+ + N P P
Sbjct: 147 VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV---FEKSVDCIFSNKPVP 193
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 47.0 bits (112), Expect = 3e-07
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDLVRCR---VVTD 64
++ VY DL+ ++ W + I+++A VILV D+ +
Sbjct: 81 ALYLAVY---DLSKGQAEVDAMKP-WLFN-IKARASSSPVILVGTHLDVSDEKQRKACMS 135
Query: 65 EDGKDMATAYD-----CKFIETSVGINHNVDELLVGILTQI 100
+ K++ + + + +L I+ +
Sbjct: 136 KITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 46.6 bits (111), Expect = 5e-07
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y F++ +S I AS+ + + W + +R A ++LV K DL
Sbjct: 78 YRGADIFVLAFSLISKASY----ENVLKKWMPE-LRRFAPNVPIVLVGTKLDLRDDKGYL 132
Query: 57 -VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDEL 92
V+T G+++ +IE S NV +
Sbjct: 133 ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 42.4 bits (100), Expect = 1e-05
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 20/100 (20%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y FI+ +S I AS+ + + W + ++ A ++LV K DL
Sbjct: 77 YRGADVFILAFSLISKASY----ENVSKKWIPE-LKHYAPGVPIVLVGTKLDLRDDKQFF 131
Query: 57 ---VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDEL 92
+T G+++ +IE S NV +
Sbjct: 132 IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 41.7 bits (98), Expect = 2e-05
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 22/102 (21%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y ++ +S S + + W + ++ +ILVANK DL
Sbjct: 94 YPDTDVILMCFSVDSPDSL----ENIPEKWVPE-VKHFCPNVPIILVANKKDLRSDEHVR 148
Query: 57 -----VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDEL 92
++ V +DG+ MA ++E S V E+
Sbjct: 149 TELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV 190
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 41.7 bits (98), Expect = 3e-05
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 22/102 (21%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y ++ +S S + + W + ++ +ILV NK DL
Sbjct: 94 YPDTDVILMCFSIDSPDSL----ENIPEKWTPE-VKHFCPNVPIILVGNKKDLRQDEHTR 148
Query: 57 -----VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDEL 92
++ V E+G+DMA ++E S V E+
Sbjct: 149 RELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 40.9 bits (96), Expect = 5e-05
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 22/102 (21%)
Query: 8 YETPHGFIIVYSTIDLASFH-VAEQCLQALWK---KDSIRSKAVILVANKTDL------- 56
Y F+I +S ++ ASF V E+ W K+ + +L+ + DL
Sbjct: 87 YPMTDVFLICFSVVNPASFQNVKEE-----WVPELKEYAPNVPFLLIGTQIDLRDDPKTL 141
Query: 57 -----VRCRVVTDEDGKDMATAYD-CKFIETSVGINHNVDEL 92
++ + + E G+ +A C ++E S + +
Sbjct: 142 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 40.1 bits (94), Expect = 1e-04
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 24/103 (23%)
Query: 8 YETPHGFIIVYSTIDLASFH-VAEQCLQALWKKDSIRSKA----VILVANKTDL------ 56
Y F++ +S + +SF V+E+ W + IR +ILV ++DL
Sbjct: 89 YTNTDIFLLCFSVVSPSSFQNVSEK-----WVPE-IRCHCPKAPIILVGTQSDLREDVKV 142
Query: 57 ------VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDEL 92
+ + V +E K +A +IE S N+ E+
Sbjct: 143 LIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 40.1 bits (94), Expect = 1e-04
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y F+I +S + ASF W + +R +ILV K DL
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAK----WYPE-VRHHCPNTPIILVGTKLDLRDDKDTI 153
Query: 57 -----VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDEL 92
+ +T G MA K++E S + +
Sbjct: 154 EKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 39.5 bits (93), Expect = 2e-04
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 40 DSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQ 99
+ I++K ++V NK D+V +E+ D ++ S +++L I +
Sbjct: 346 ERIKNKRYLVVINKVDVVE---KINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 402
Query: 100 IRLKLDNPPEPVLTRE 115
+ + + ++T
Sbjct: 403 TQEIFERGSDSLITNL 418
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 38.6 bits (90), Expect = 3e-04
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 22/102 (21%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y ++ + SF + W + + +I+V KTDL
Sbjct: 103 YPDASVLLLCFDVTSPNSF----DNIFNRWYPE-VNHFCKKVPIIVVGCKTDLRKDKSLV 157
Query: 57 -----VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDEL 92
VT G++MA + ++E S ++ NV +
Sbjct: 158 NKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAV 199
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 37.8 bits (88), Expect = 6e-04
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 23/103 (22%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y +I + + WK + I+ ++LV K+DL
Sbjct: 76 YPDSDAVLICFDISRPETLDSV----LKKWKGE-IQEFCPNTKMLLVGCKSDLRTDVSTL 130
Query: 57 -----VRCRVVTDEDGKDMATAYDC-KFIETSVGINHN-VDEL 92
R V+ + G +MA +IE S + N V ++
Sbjct: 131 VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 36.3 bits (84), Expect = 0.002
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 23/103 (22%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKA----VILVANKTDL------- 56
Y +I + + + WK + I+ ++LV K+DL
Sbjct: 97 YPDSDAVLICFDISRPETL----DSVLKKWKGE-IQEFCPNTKMLLVGCKSDLRTDVSTL 151
Query: 57 -----VRCRVVTDEDGKDMATAYDC-KFIETSVGINHN-VDEL 92
R V+ + G +MA +IE S + N V ++
Sbjct: 152 VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 36.3 bits (84), Expect = 0.002
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWK---KDSIRSKAVILVANKTDL-------- 56
Y +I +S + ASF W + + +ILV K DL
Sbjct: 74 YPQTDVSLICFSLVSPASFENVRAK----WYPEVRHHCPNTPIILVGTKLDLRDDKDTIE 129
Query: 57 ----VRCRVVTDEDGKDMATAYD-CKFIETSVGINHNVDEL 92
+ +T G MA K++E S + +
Sbjct: 130 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 35.3 bits (81), Expect = 0.005
Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 38/109 (34%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSK------------AVILVANKTD 55
Y F+I +S + ASF +R+K +ILV K D
Sbjct: 224 YPQTDVFLICFSLVSPASF-------------HHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 56 L------------VRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDE 91
L + +T G MA K++E S +
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 319
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 35.6 bits (83), Expect = 0.005
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 39 KDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILT 98
K + + + VANK D D + +A + I S +D L +
Sbjct: 338 KAAHPAAKFLTVANKLDRAA---NADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGD 394
Query: 99 QIR-LKLDNPPEPVLTRE 115
++ L + ++T
Sbjct: 395 LVKNLDKLHEASVLVTSL 412
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 34.5 bits (79), Expect = 0.010
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWK---KDSIRSKAVILVANKTDL-------- 56
Y ++ + + A + W+ D S V+L+ KTDL
Sbjct: 96 YSDSDAVLLCFDISRPETVDSALKK----WRTEILDYCPSTRVLLIGCKTDLRTDLSTLM 151
Query: 57 ----VRCRVVTDEDGKDMATAYDC-KFIETSVGIN-HNVDEL 92
+ ++ E G +A ++E S + ++ +
Sbjct: 152 ELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.020
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 34/141 (24%)
Query: 40 DSIR---SKAVI--LVANKTDLVRCRVVTD---EDGKDMATAYDCKFIETSVGINHNVDE 91
D + SK I ++ +K + + ++M KF+E + IN+
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ----KFVEEVLRINYKF-- 93
Query: 92 LLVGILTQIRLKLDNPPEPVLTREQF-SCRRRRSKSPGGFRKLRGHRTSASLKVKGLLSK 150
+++ I+ +P + + R R F K R LK++ L +
Sbjct: 94 ----LMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 151 VWQRDSKS----------KSC 161
+ R +K+ K+
Sbjct: 147 L--RPAKNVLIDGVLGSGKTW 165
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 32.8 bits (75), Expect = 0.027
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 39 KDSIRSKAVILVANKTDLVRCRVVTDEDGKDM-----ATAYDCKFIETSVGINHNVDELL 93
K +K++++ NK D ++ ++ + KF S V++
Sbjct: 137 KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK 196
Query: 94 VGILTQIRLKLDNPPEPVLTREQFSCRR 121
+ LK D +L +EQ +
Sbjct: 197 ITACE--LLKNDQAESILLDQEQLLNTK 222
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 33.2 bits (77), Expect = 0.029
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 34 QALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELL 93
Q ++++ ++ + +ILV NK DLV +++T + + + T+ +D L
Sbjct: 322 QEIYEQ--VKHRPLILVMNKIDLVEKQLITSLE----YPENITQIVHTAAAQKQGIDSLE 375
Query: 94 VGILTQIRL-KLDNPPEPVLTRE 115
IL ++ K+ + +
Sbjct: 376 TAILEIVQTGKVQAADMDLAINQ 398
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 31.5 bits (72), Expect = 0.078
Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDLVRC---RVVT 63
Y I+V + D V + L + + +R KA +L+ ANK D+ C ++
Sbjct: 81 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-KAGLLIFANKQDVKECMTVAEIS 139
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
+ + + L ++++++++L++
Sbjct: 140 QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 31.7 bits (72), Expect = 0.079
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 39 KDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILT 98
+ ++V NK D+ + + + I+ S +D + I+
Sbjct: 275 HGEFKDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332
Query: 99 QIRLKLDNPPEPVLTREQFSCRRRRS 124
+R + + RE RR RS
Sbjct: 333 TLRPLAEKVAREKIEREL---RRYRS 355
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 31.1 bits (71), Expect = 0.12
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
Y I V + D A + L + +++ ++ A +LV ANK D
Sbjct: 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ-DAALLVFANKQDQ 131
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
+ + D ++ L L K ++ +LV NK DL
Sbjct: 88 CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ-GIPVLVLGNKRDL 136
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 30.2 bits (69), Expect = 0.17
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDLVRC 59
++ G I V + D + A + L + +D +R AV+LV ANK DL
Sbjct: 65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-DAVLLVFANKQDLPNA 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 30.3 bits (69), Expect = 0.19
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
+ I V + D VA+ L AL +D +R K+++L+ ANK DL
Sbjct: 87 FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR-KSLLLIFANKQDL 135
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 30.3 bits (69), Expect = 0.19
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD 64
+E+ G I V + D ++ LQ+L ++ + +++ ANK DL
Sbjct: 83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.21
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 20/69 (28%)
Query: 5 IANYETPHGFIIVYSTI--DLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV- 61
I NY V DL + L + I+ + K D++ +
Sbjct: 1843 IVNYNVE-NQQYV---AAGDLRALDTVTNVL------NFIKLQ-------KIDIIELQKS 1885
Query: 62 VTDEDGKDM 70
++ E+ +
Sbjct: 1886 LSLEEVEGH 1894
Score = 29.6 bits (66), Expect = 0.52
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 50/172 (29%)
Query: 1 PEECIANYE--TPHGFIIVYSTI-----DLASFH-VAEQCLQAL-WKKDSI--RSKAVIL 49
P E + + T H +V + SF + + L + I R
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF----IGVRCY---E 312
Query: 50 VANKTDLVRCRVVTD--EDGKD----MATAYDC--KFIETSVG-INHNVDELLVGILTQI 100
T L ++ D E+ + M + + + ++ V N ++ Q+
Sbjct: 313 AYPNTSL-PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-----KQV 366
Query: 101 RLKLDN---------PPEPVLTREQFSCRRRR-------SKSPGGFRKLRGH 136
+ L N PP+ L + R+ + S+ P RKL+
Sbjct: 367 EISLVNGAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Score = 28.1 bits (62), Expect = 2.0
Identities = 29/151 (19%), Positives = 44/151 (29%), Gaps = 50/151 (33%)
Query: 22 DL-ASFHVAEQCLQALWKK-D---------SIRSKAVILVANKTDLVRCRVVTDEDGKDM 70
DL + A Q +W + D SI I++ N +L E GK +
Sbjct: 1634 DLYKTSKAA----QDVWNRADNHFKDTYGFSILD---IVINNPVNLTI--HFGGEKGKRI 1684
Query: 71 ATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQFSCRRRRSKSP--- 127
Y ET V +++ I + +L+ QF+ P
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-------QPALT 1737
Query: 128 ----GGFRKLR------------GHRTSASL 142
F L+ GH SL
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGH----SL 1764
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 30.3 bits (69), Expect = 0.22
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 8 YETPHGFI-IVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
+G + +V D +++ L +L ++I IL+ NK D
Sbjct: 90 LPAINGIVFLVDCA-DHERLLESKEELDSLMTDETIA-NVPILILGNKIDR 138
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.8 bits (68), Expect = 0.23
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
Y I V + D +++ L A+ +++ +R KA+++V ANK D+
Sbjct: 72 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR-KAILVVFANKQDM 120
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.4 bits (69), Expect = 0.25
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 14/76 (18%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYD----CKFIETSVGINHNVDELLVGILTQIRL 102
++V NK D++ E +++ Y+ K + S D++ I
Sbjct: 143 FVVVVNKIDVL------GEKAEELKGLYESRYEAKVLLVSALQKKGFDDI----GKTISE 192
Query: 103 KLDNPPEPVLTREQFS 118
L E +
Sbjct: 193 ILPGDEEIPYLGDLID 208
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 30.2 bits (69), Expect = 0.26
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 48 ILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR-LKLDN 106
++ NK DL+ V + D + S + L + +R
Sbjct: 273 LVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPE 330
Query: 107 PPEPVLTREQFSCRRRRSKSPGGFRKLRGHR 137
P+PV +E + + G + +R
Sbjct: 331 MPKPVPRKEVQAGVEVVPVAEGVYE-VRAPE 360
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 29.9 bits (68), Expect = 0.27
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDLVRC 59
Y I+V + D V + L + + +R KA +L+ ANK D+ C
Sbjct: 86 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-KAGLLIFANKQDVKEC 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 30.2 bits (68), Expect = 0.27
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
++ G I V + D + A + L + +D +R AV+LV ANK DL
Sbjct: 230 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-DAVLLVFANKQDL 278
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 29.5 bits (67), Expect = 0.33
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 8 YETPHGFI-IVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
+ +G + +V + D F A L AL+ ++ ++ NK D
Sbjct: 88 FPEVNGIVFLVDAA-DPERFDEARVELDALFNIAELK-DVPFVILGNKIDA 136
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.2 bits (66), Expect = 0.43
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
++ G I V + D + LQ + ++D +R AV+LV ANK D+
Sbjct: 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELR-DAVLLVFANKQDM 142
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.1 bits (66), Expect = 0.45
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 7/55 (12%)
Query: 38 KKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDEL 92
+ +V NK D+ + E I S VD L
Sbjct: 109 IARLPAKLPITVVRNKADITGETLGMSEVN-------GHALIRLSARTGEGVDVL 156
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 29.1 bits (66), Expect = 0.50
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
+E I V + D F Q L L +++ + +L+ ANK DL
Sbjct: 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLS-CVPVLIFANKQDL 129
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 28.7 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILV-ANKTDL 56
Y G I V D A Q L + +R A+IL+ ANK DL
Sbjct: 387 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR-DAIILIFANKQDL 435
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure
initiative, midwest center for structural genomic
unknown function; 1.75A {Pyrococcus horikoshii} SCOP:
c.56.7.1
Length = 298
Score = 27.7 bits (61), Expect = 1.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCL 33
Y H +I+ + +D AS ++ + +
Sbjct: 18 YFQGHMKVIMTTKVDKASMNIMNKLI 43
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 27.5 bits (62), Expect = 1.9
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 13/74 (17%)
Query: 48 ILVANKTDLV----RCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
I+VANK D+ ++ D S + ELL + Q+
Sbjct: 278 IIVANKMDMPEAAENLEAFKEKLTDDY------PVFPISAVTREGLRELLFEVANQLE-- 329
Query: 104 LDNPPEPVLTREQF 117
+ P P+ E+
Sbjct: 330 -NTPEFPLYDEEEL 342
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.5 bits (62), Expect = 2.0
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 16/55 (29%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATA---------YDCKFIETSVGINHNVDEL 92
I+ K DL + D+D +D A YD TS ++ ++
Sbjct: 120 PIICITKMDL-----IEDQDTEDTIQAYAEDYRNIGYDV--YLTSSKDQDSLADI 167
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 27.6 bits (61), Expect = 2.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 39 KDSIRSKAVILVANKTDLV 57
+ + V+LV NK DL+
Sbjct: 91 HRFVGNNKVLLVGNKADLI 109
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD,
structural genomics, PSI, protein structure initiative;
1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Length = 282
Score = 27.3 bits (60), Expect = 2.6
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 15 IIVYSTIDLASFHVAEQCLQ-ALWKKDSI 42
++V S D A ++ + L A +++ +
Sbjct: 7 LVVCSESDTAGQNIKDNLLTFADFEEKDV 35
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 27.0 bits (61), Expect = 2.6
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIET---SVGINHNVDELL 93
VIL NK D V+ + + +A+ + F++ S NVD +
Sbjct: 119 VILAVNKVDNVQEKADLLPHLQFLASQMN--FLDIVPISAETGLNVDTIA 166
>3f1t_A Uncharacterized protein Q9I3C8_pseae; PAR319A, NESG, structural
genomics, PSI-2, Pro structure initiative; HET: MSE;
2.20A {Pseudomonas aeruginosa}
Length = 148
Score = 26.0 bits (57), Expect = 4.6
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 18 YSTIDLASFHVAEQCLQALWKKDSIRSKAVIL-VANKTDLVRCRVVTDEDGKDMATA 73
T+DL + + A V R D+ G+ +A
Sbjct: 81 CPTLDLRI-----DYMHPAEPHKDVYGFAECYRVTPNVIFTRGFAYQDDPGQPIAHV 132
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.4 bits (58), Expect = 5.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 39 KDSIRSKAVILVANKTDLV 57
++LV NK DL+
Sbjct: 93 PRFAADNPILLVGNKADLL 111
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.0 bits (58), Expect = 5.9
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATA--------YDCKFIETSVGINHNVDEL 92
++V NK DL + +E+ K++ YD ++ S +DEL
Sbjct: 113 PVIVFNKIDL-----LNEEEKKELERWISIYRDAGYDV--LKVSAKTGEGIDEL 159
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 25.9 bits (58), Expect = 6.4
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 12/60 (20%)
Query: 39 KDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYD--CKFIET---SVGINHNVDELL 93
K + ++LV NK D + ++ AY E S V EL
Sbjct: 112 KPLVGKVPILLVGNKLDAA-------KYPEEAMKAYHELLPEAEPRMLSALDERQVAELK 164
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.0 bits (58), Expect = 7.8
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 16/54 (29%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATA--------YDCKFIETSVGINHNVDEL 92
++V NK DL DED Y ++TS ++EL
Sbjct: 118 TVMVINKMDLY------DEDDLRKVRELEEIYSGLYPI--VKTSAKTGMGIEEL 163
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 25.9 bits (58), Expect = 8.2
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIE---TSVGINHNVDELL 93
VI+V NK D + ++ + + E S N+DEL+
Sbjct: 125 VIVVINKIDKIGPAKNVLPLIDEIHKKH-PELTEIVPISALKGANLDELV 173
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 25.1 bits (56), Expect = 8.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 43 RSKAVILVANKTD 55
+ K VILVA K D
Sbjct: 107 KGKPVILVATKVD 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,491,540
Number of extensions: 136747
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 134
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)