RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15004
(167 letters)
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 60.3 bits (145), Expect = 1e-12
Identities = 31/93 (33%), Positives = 46/93 (49%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ GFI+VYS ++ SF + + + VILV NK DL R V+ +G
Sbjct: 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ +A + C F+ETS VDEL I+ Q+
Sbjct: 132 RALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 59.8 bits (144), Expect = 2e-12
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
G ++VY + SF ++ + + +++ NK D+ R V+ E G+ +A
Sbjct: 80 MGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA 138
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
Y KF+ETS N NV+ + I+ K+D
Sbjct: 139 LDYGIKFMETSAKANINVENAFFTLARDIKAKMD 172
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 58.7 bits (141), Expect = 5e-12
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED 66
Y G ++VY ++ E+ L+ L + ++LV NK+DL R V ++
Sbjct: 73 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDE 131
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+ A + FIETS + NV+E ILT+I
Sbjct: 132 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 56.8 bits (136), Expect = 3e-11
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
+ Y G ++VY ++++ L + + + +IL+ NK DL R VT
Sbjct: 70 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKADLEAQRDVT 128
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
E+ K A F+E S NV++ + +I
Sbjct: 129 YEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 55.7 bits (133), Expect = 6e-11
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y G ++VY +F+ L+ + S + ++L+ NK+DL R V E+G
Sbjct: 73 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEG 131
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
+ A + F+ETS NV+E + +I K+
Sbjct: 132 EAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 55.3 bits (132), Expect = 1e-10
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ GF++++ SF + L + ++L+ NK DL R V +
Sbjct: 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA 144
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPE 109
+++A Y + ETS NV++ + +L I +++ E
Sbjct: 145 RELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 186
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 53.8 bits (128), Expect = 3e-10
Identities = 25/100 (25%), Positives = 50/100 (50%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
+ + GF+ V+S ++ SF + + + + +LV NK+DL R V+
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
E+ K+ A ++ ++ETS NVD++ ++ +IR +
Sbjct: 129 VEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 51.5 bits (122), Expect = 2e-09
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED 66
Y +G I+VY D SF + ++ +K + +V NK DL + R V+ ++
Sbjct: 72 YYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQE 130
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ A + K TS N ++EL + + ++
Sbjct: 131 AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 51.0 bits (121), Expect = 3e-09
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
H +++Y + ASF Q + + A++L+ NK D RVV EDG+ +A
Sbjct: 81 HALLLLYDVTNKASFDN-IQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA 139
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQIR 101
Y F+ETS NVD I +++
Sbjct: 140 KEYGLPFMETSAKTGLNVDLAFTAIAKELK 169
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 50.6 bits (120), Expect = 5e-09
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y G I+VY +F + L L + +LV NK D R V +G
Sbjct: 77 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEG 135
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
A + FIE S V ++ +I
Sbjct: 136 LKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 50.5 bits (119), Expect = 6e-09
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 26 FHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGI 85
F A + L + +ILV NK+DLVR R V+ ++G+ A +DCKFIETS +
Sbjct: 87 FEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAAL 146
Query: 86 NHNVDELLVGILTQIRLKLDN 106
+HNV L G++ QIRL+ D+
Sbjct: 147 HHNVQALFEGVVRQIRLRRDS 167
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 49.6 bits (117), Expect = 1e-08
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
++VY ++ SF + + + + ++LV NKTDL R V+ E+G
Sbjct: 70 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEG 128
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ A + FIETS +NV +L + +
Sbjct: 129 ERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 49.2 bits (116), Expect = 2e-08
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
T GF+ V++ + SF Q + + + ++LV NK D + R V
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LAARTVESRQA 130
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+D+A +Y +IETS V++ ++ +IR
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 49.0 bits (116), Expect = 2e-08
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y G I+VY D +F +Q + + +A +L+ + RVVT + G
Sbjct: 72 YRGAMGIILVYDITDERTFTNIKQWFK--TVNEHANDEAQLLLVGNKSDMETRVVTADQG 129
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKL 104
+ +A FIE+S + NV+E+ + I+ K+
Sbjct: 130 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 49.3 bits (116), Expect = 2e-08
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 7 NYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED 66
T GF++V+S D SF + + + + +IL+ NK DL R VT E+
Sbjct: 73 YMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEE 132
Query: 67 GKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
G+ +A ++E S I NVD+ ++ IR
Sbjct: 133 GQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 49.0 bits (115), Expect = 2e-08
Identities = 43/102 (42%), Positives = 58/102 (56%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
+ ++IVYS D ASF A + L + +ILV NK+DLVRCR V+
Sbjct: 71 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 130
Query: 64 DEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLD 105
+G+ A +DCKFIETS + HNV EL GI+ Q+RL+ D
Sbjct: 131 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 172
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 48.8 bits (115), Expect = 2e-08
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWK-KDSIRSKAVILVANKTDLVRCRVVTDEDGKDM 70
H FI+VYS S + + + + K + S ++LV NK D R V + + +
Sbjct: 75 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL 134
Query: 71 ATAYDCKFIETSVGINHNVDELLVGILTQIR 101
A + C F+ETS +NHNV EL +L +
Sbjct: 135 ARTWKCAFMETSAKLNHNVKELFQELLNLEK 165
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 48.4 bits (114), Expect = 3e-08
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y G ++VY +++ L S ++ +IL NK DL R VT +
Sbjct: 75 YRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEA 133
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
A + F+ETS NV+E V +I K+++
Sbjct: 134 SRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 172
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 47.3 bits (111), Expect = 7e-08
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y H + VY ++ASFH ++ + ILV NK DL V +
Sbjct: 73 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA 132
Query: 68 KDMATAYDCKFIETSV---GINHNVDEL 92
+ A + ETS N +V+ +
Sbjct: 133 QKFADTHSMPLFETSAKNPNDNDHVEAI 160
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 47.0 bits (110), Expect = 1e-07
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
T GF+IVYS D ASF ++ Q + + S +ILVANK DL+ R VT + G
Sbjct: 73 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQG 132
Query: 68 KDMATAYDCKFIETSV-GINHNVDELLVGILTQIR 101
K+MAT Y+ +IETS NVD+ ++ IR
Sbjct: 133 KEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 46.9 bits (110), Expect = 1e-07
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
GF++VY D SF L + ++ +ILV NK DL R V+ E+G
Sbjct: 70 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEG 129
Query: 68 KDMATAYDCKFIETSVGINH-NVDELLVGILTQIRLK 103
+ +AT C F E S N+ E+ + ++R +
Sbjct: 130 EKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 47.0 bits (110), Expect = 1e-07
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTD 64
Y ++VY SF A ++ + + + + LV NK D+++ R V
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVK-ELHEQASKDIIIALVGNKIDMLQEGGERKVAR 131
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
E+G+ +A F ETS NV+++ +GI +I LK
Sbjct: 132 EEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 46.5 bits (109), Expect = 1e-07
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
+ GF +VYS ++F+ + + + + +ILV NK DL RVV E G
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG 131
Query: 68 KDMATAY-DCKFIETSVGINHNVDELLVGILTQIR 101
+++A + +C F+E+S NV+E+ ++ QI
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 46.2 bits (108), Expect = 2e-07
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
HGF++V++ D SF+ + + + V+LV NK DL R V +
Sbjct: 79 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG 138
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQIR 101
++ + E S + NVDE ++ +R
Sbjct: 139 ASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 45.7 bits (107), Expect = 3e-07
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRV-- 61
Y G I V D A Q L + +R +++ ANK DL
Sbjct: 73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 132
Query: 62 -VTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+ ++ G + + + E L + + +
Sbjct: 133 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 45.3 bits (106), Expect = 4e-07
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCR--- 60
+ +E I V + D F Q L L +++ + V++ ANK DL+
Sbjct: 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 136
Query: 61 VVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ + + S V + + + +
Sbjct: 137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 43.8 bits (102), Expect = 1e-06
Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTD 64
Y I+V + D V + L + + +R +++ ANK D+ C ++
Sbjct: 80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ 139
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRL 102
+ + + L +++++++
Sbjct: 140 FLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 177
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 43.3 bits (101), Expect = 2e-06
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y GFI++Y + SF+ + K S + V+LV NK D+ RVV+ E G
Sbjct: 75 YRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVGNKCDMEDERVVSSERG 133
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ +A +F E S N NV + ++ I
Sbjct: 134 RQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 43.3 bits (101), Expect = 2e-06
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y + + I+ Y SF + L+ ++ + +LV NK DL R V+ +
Sbjct: 75 YRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGNKIDLAERREVSQQRA 133
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
++ + A D ++ETS + NV++L + + ++ +
Sbjct: 134 EEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 43.1 bits (100), Expect = 2e-06
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y IIVY +F + ++ ++ S V + NK DL R V + D
Sbjct: 74 YRGSAAAIIVYDITKEETFSTLKNWVR-ELRQHGPPSIVVAIAGNKCDLTDVREVMERDA 132
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
KD A + F+ETS N++EL + I +I
Sbjct: 133 KDYADSIHAIFVETSAKNAININELFIEISRRI 165
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 43.1 bits (100), Expect = 3e-06
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y I+VY + SF A+ ++ ++ + + + L NK DL R V ++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADLANKRAVDFQEA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
+ A F+ETS + NV+E+ + I ++
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 42.4 bits (98), Expect = 5e-06
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMA 71
+G+I+VYS + SF V + L ++LV NK DL RV++ E+GK +A
Sbjct: 77 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 136
Query: 72 TAYDCKFIETSVGINHNVDELLVGILTQIR 101
+++ F+E+S N ++ I+ +
Sbjct: 137 ESWNAAFLESSAKENQTAVDVFRRIILEAE 166
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 42.3 bits (98), Expect = 6e-06
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRC---RVVTD 64
Y I V + D A + L + +++ ++ A+++ ANK D V+
Sbjct: 82 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSK 141
Query: 65 EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIR 101
E + +S + E L ++ I+
Sbjct: 142 ELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 40.4 bits (93), Expect = 2e-05
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 37 WKKDSIRSKAVILVANKTDL---VRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELL 93
K ++ V+++ NK DL + + + ++ + S N+D L
Sbjct: 97 LDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156
Query: 94 VGILTQIR 101
++ +
Sbjct: 157 QWLIQHSK 164
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 40.3 bits (93), Expect = 2e-05
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRS--KAVILVANKTDLVRCRVVTDE 65
Y ++ +S D SF + ++ ++ + R V+ E
Sbjct: 76 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTE 135
Query: 66 DGKDMATAY-DCKFIETSVGINHNVDELLVGILTQI 100
+ + D + ETS NV + ++
Sbjct: 136 EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 40.5 bits (93), Expect = 2e-05
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 23 LASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETS 82
+ + +++ NK DL +V T + + + ETS
Sbjct: 90 FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETS 149
Query: 83 VGINHNVDELLVGILTQIRLK------LDNPPEPV 111
NV++ I + + PEP+
Sbjct: 150 AKEAINVEQAFQTIARNALKQETEVELYNEFPEPI 184
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 40.6 bits (94), Expect = 2e-05
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y HG IIVY + + + + + +LV NK DL RVV +
Sbjct: 76 YRGSHGIIIVYD-VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 134
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDNPPEPVLTREQ 116
K+ A A F+ETS + NV++ + + QI+ + T+++
Sbjct: 135 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 183
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 39.7 bits (91), Expect = 4e-05
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
Y I V + D +++ L A+ +++ +R +++ ANK D+ + +
Sbjct: 66 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS 125
Query: 64 D---EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
+ G + +TS +DE + ++ ++ +
Sbjct: 126 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 39.6 bits (91), Expect = 4e-05
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANK---TDLVRCR 60
++ G I V + D + A + L + +D +R +++ ANK + +
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 61 VVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+TD+ G + T + E L + Q+
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 39.6 bits (91), Expect = 5e-05
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 18/110 (16%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDED----- 66
I + +V + + + +ILV K DL + ++
Sbjct: 79 VSLICFSLVSPASFENVRAKWYPEVRHHCP--NTPIILVGTKLDLRDDKDTIEKLKEKKL 136
Query: 67 -------GKDMATAY-DCKFIETSVGINHNVDELLVGILTQIRLKLDNPP 108
G MA K++E S + + + + L PP
Sbjct: 137 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---LCPPP 183
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 37.8 bits (86), Expect = 2e-04
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 8 YETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDG 67
Y ++V+ST D SF + LV NK DL+ + +E+
Sbjct: 72 YRGAQACVLVFSTTDRESFE--AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEA 129
Query: 68 KDMATAYDCKFIETSVGINHNVDELLVGILTQI 100
+ +A +F TSV + NV E+ + +
Sbjct: 130 EGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 37.7 bits (86), Expect = 2e-04
Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLKLDN 106
++L NK D+ +V + ++ + S N+N ++ + + ++ + +
Sbjct: 110 IVLCGNKVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL---IGD 164
Query: 107 P 107
P
Sbjct: 165 P 165
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 37.0 bits (84), Expect = 4e-04
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVT 63
+E+ G I V + D ++ LQ+L ++ + +++ ANK DL
Sbjct: 63 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 122
Query: 64 D---EDGKDMATAYDCKFIETSVGINHNVDELLVGILTQIRLK 103
D ++ + S ++ + +L I +
Sbjct: 123 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 36.9 bits (84), Expect = 4e-04
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 50 VANKTDL------------VRCRVVTDEDGKDMATAY-DCKFIETSVGINHNVDELLVGI 96
+ + DL ++ + + E G+ +A C ++E S + +
Sbjct: 119 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178
Query: 97 LTQI 100
+ I
Sbjct: 179 IIAI 182
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 35.7 bits (81), Expect = 0.001
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 47 VILVANKTDLVRCRVVTDEDGKDMAT-AYDCKFIETSVGINHNVDELLVGILTQIR 101
++ ++ RVV D + + C + ET NVD + + ++
Sbjct: 111 LVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 33.9 bits (76), Expect = 0.005
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 4 CIANYETPHGFIIVYSTIDLASFHVAEQCLQALWK---KDSIRSKAVILVANKTDLVRCR 60
+A Y ++VY + +SF + +S + +++ NK D +
Sbjct: 69 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 128
Query: 61 VVTDEDGKDMATAY--DCKFIETSVGINHNVDELLVGILTQI 100
+ E D TS NVD I
Sbjct: 129 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 32.7 bits (73), Expect = 0.010
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDL------------VRC 59
+I + + + + ++ +K ++LV K+DL R
Sbjct: 75 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQ 133
Query: 60 RVVTDEDGKDMATAY-DCKFIETSVGINHNVDELLVGILTQIRLK 103
V+ + G +MA +IE S + N + + T +
Sbjct: 134 TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 32.3 bits (72), Expect = 0.016
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 17/77 (22%)
Query: 47 VILVANKTDLVRCRVVTD------------EDGKDMATAYD-CKFIETSVGINHNVDELL 93
+LV + DL + E + +A K++E S + +
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
Query: 94 VGILTQIRLKLDNPPEP 110
+ PPEP
Sbjct: 170 DEAILAAL----EPPEP 182
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.8 bits (68), Expect = 0.052
Identities = 9/69 (13%), Positives = 14/69 (20%)
Query: 32 CLQALWKKDSIRSKAVILVANKTDLVRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDE 91
L K D + + + L A + SV E
Sbjct: 117 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 176
Query: 92 LLVGILTQI 100
+ I
Sbjct: 177 GFRWMAQYI 185
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 30.0 bits (66), Expect = 0.096
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 52 NKTDLVRCRVVTDEDGKDMATAYDC-KFIETSVGINHNVDELL 93
+ ++ V E+G+DMA ++E S V E+
Sbjct: 126 RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 168
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 26.7 bits (58), Expect = 1.3
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 40 DSIRSKAVILVANKTDLV 57
D +++K I++ NK D
Sbjct: 38 DILKNKPRIMLLNKADKA 55
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.6 bits (57), Expect = 1.4
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 12 HGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVILVANKTDLVRCRVVTD------- 64
+G + + D F A L AL+ ++ +++ NK D +
Sbjct: 69 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGL 128
Query: 65 ---EDGKDMATAYDCKFIETSVGINHNVDELL 93
+ + + SV + + E
Sbjct: 129 LNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160
>d2phna1 d.340.1.1 (A:2-249) F420-0:gamma-glutamyl ligase CofE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 26.7 bits (59), Expect = 1.4
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 9 ETPHGFIIVYSTIDLASFHVAEQCLQALWKKDSIRSKAVIL--VANKTDLVRCRVVTDED 66
+ G + V + ID ++ E+ L D S + + T ++TD +
Sbjct: 95 KAKFGNVCVNAGIDASN---VEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTN 151
Query: 67 GKDM 70
G+
Sbjct: 152 GRCF 155
>d2f0xa1 d.38.1.5 (A:3-138) Hypothetical protein Them2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 136
Score = 25.3 bits (55), Expect = 2.7
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 32 CLQALWKKDSIRSKAVIL-VANKTDLVRCRVVTDEDGKDMATAYDCKFI 79
+ + I A +L + GK +A K +
Sbjct: 88 YMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL 136
>d2nqra1 b.85.6.1 (A:327-409) Molybdenum cofactor biosynthesis
protein MoeA, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 83
Score = 24.0 bits (52), Expect = 5.2
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 41 SIRSKAVILVANKTDLVRCRVVTDEDGKDMATAY 74
++ + D R + + DG+ T
Sbjct: 12 RLKKTP-----GRLDFQRGVLQRNADGELEVTTT 40
>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 278
Score = 24.5 bits (53), Expect = 7.2
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 15 IIVYSTIDLASFHVAEQCLQ-ALWKKDSI 42
++V S D A ++ + L A +++ +
Sbjct: 3 LVVCSESDTAGQNIKDNLLTFADFEEKDV 31
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 24.6 bits (52), Expect = 7.4
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 2 EECIANYETPHGFIIVYSTIDL--ASFHVAEQCLQALWKKDSIRSKAVI---LVANKTDL 56
E F++ + ID + + K I+ + + + L
Sbjct: 113 EALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
Query: 57 VRCRVVTDEDGKDMATAYDCKFIETSVGINHNVDELLVGILTQI------RLKLD 105
++ + A I S + ELL ++ +LK++
Sbjct: 173 HEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIE 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,213
Number of extensions: 25094
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 62
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.3 bits)