BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15005
         (336 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt
          Length = 593

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/44 (22%), Positives = 27/44 (61%)

Query: 276 LTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVF 319
           +  + +LP+F++  + +  E++E RF+ K++ + +  +I   +F
Sbjct: 97  IVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIF 140


>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
 pdb|3DH4|B Chain B, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
 pdb|3DH4|C Chain C, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
 pdb|3DH4|D Chain D, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
          Length = 530

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/44 (22%), Positives = 27/44 (61%)

Query: 276 LTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVF 319
           +  + +LP+F++  + +  E++E RF+ K++ + +  +I   +F
Sbjct: 68  IVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIF 111


>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt
          Length = 593

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/44 (22%), Positives = 27/44 (61%)

Query: 276 LTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVF 319
           +  + +LP+F++  + +  E++E RF+ K++ + +  +I   +F
Sbjct: 97  IVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIF 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.142    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,461,169
Number of Sequences: 62578
Number of extensions: 303160
Number of successful extensions: 598
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 10
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)