Query psy15005
Match_columns 336
No_of_seqs 285 out of 2370
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 18:01:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2349|consensus 100.0 2.6E-35 5.5E-40 288.8 4.1 229 3-235 165-449 (585)
2 TIGR00813 sss transporter, SSS 100.0 1.3E-32 2.9E-37 267.5 15.5 222 3-231 124-407 (407)
3 PRK10484 putative transporter; 100.0 1.9E-32 4E-37 274.2 15.8 222 4-237 170-448 (523)
4 PRK15419 proline:sodium sympor 100.0 1.1E-32 2.5E-37 274.5 13.9 229 3-236 168-442 (502)
5 TIGR02121 Na_Pro_sym sodium/pr 100.0 1.5E-32 3.2E-37 272.8 13.7 226 3-236 164-435 (487)
6 PF00474 SSF: Sodium:solute sy 100.0 3.7E-32 8E-37 264.3 6.1 224 3-231 128-406 (406)
7 TIGR02119 panF sodium/pantothe 100.0 4.3E-31 9.4E-36 261.5 13.4 222 3-237 165-436 (471)
8 PRK09442 panF sodium/panthothe 100.0 8.9E-31 1.9E-35 260.0 13.9 221 3-237 166-438 (483)
9 TIGR02711 symport_actP cation/ 100.0 1.9E-30 4.1E-35 260.7 16.1 237 3-243 188-480 (549)
10 PRK12488 acetate permease; Pro 100.0 3.6E-30 7.8E-35 258.7 16.3 230 3-236 188-473 (549)
11 PRK09395 actP acetate permease 100.0 5.6E-29 1.2E-33 250.4 15.5 231 3-237 190-476 (551)
12 COG0591 PutP Na+/proline sympo 100.0 3.3E-28 7.2E-33 241.3 13.9 229 3-237 163-443 (493)
13 COG4145 PanF Na+/panthothenate 100.0 5.9E-29 1.3E-33 228.2 6.9 219 3-236 164-434 (473)
14 COG4147 DhlC Predicted symport 99.9 1.9E-27 4.1E-32 225.0 13.2 232 2-237 161-461 (529)
15 TIGR03648 Na_symport_lg probab 99.9 8.9E-27 1.9E-31 234.6 14.1 228 3-236 153-483 (552)
16 COG4146 Predicted symporter [G 99.8 7.4E-21 1.6E-25 175.0 10.0 220 3-235 171-447 (571)
17 KOG3761|consensus 99.8 2.8E-20 6E-25 169.0 2.4 228 4-236 173-457 (591)
18 KOG2349|consensus 99.7 1.1E-18 2.4E-23 171.9 5.1 116 214-336 38-153 (585)
19 COG4146 Predicted symporter [G 99.5 5.5E-15 1.2E-19 136.6 1.4 94 243-336 55-149 (571)
20 KOG2348|consensus 99.4 3.1E-13 6.6E-18 127.7 6.6 227 4-235 174-467 (667)
21 PRK10484 putative transporter; 99.3 1.1E-12 2.5E-17 131.7 5.4 115 214-335 31-146 (523)
22 TIGR03648 Na_symport_lg probab 99.2 4.3E-12 9.4E-17 128.2 3.4 115 214-335 25-140 (552)
23 PRK12488 acetate permease; Pro 99.1 7.6E-11 1.6E-15 119.1 3.7 116 214-336 60-176 (549)
24 PF00474 SSF: Sodium:solute sy 99.1 8.4E-11 1.8E-15 114.5 3.5 113 217-336 2-116 (406)
25 PRK09395 actP acetate permease 99.1 9.9E-11 2.1E-15 118.3 4.1 114 215-335 63-177 (551)
26 PRK15419 proline:sodium sympor 99.0 2.9E-10 6.2E-15 113.8 4.5 116 214-336 33-156 (502)
27 TIGR00813 sss transporter, SSS 99.0 3.8E-10 8.3E-15 110.0 4.9 110 220-336 2-112 (407)
28 TIGR02121 Na_Pro_sym sodium/pr 98.9 5.8E-10 1.2E-14 111.2 4.2 116 214-336 29-152 (487)
29 TIGR02711 symport_actP cation/ 98.9 6.7E-10 1.5E-14 112.2 3.8 115 214-335 60-175 (549)
30 COG0591 PutP Na+/proline sympo 98.9 1.7E-09 3.6E-14 107.9 4.5 115 214-335 31-150 (493)
31 TIGR02119 panF sodium/pantothe 98.8 5.9E-09 1.3E-13 103.6 5.0 116 214-336 33-153 (471)
32 PRK09442 panF sodium/panthothe 98.8 6.8E-09 1.5E-13 103.5 5.2 116 214-336 34-154 (483)
33 COG4145 PanF Na+/panthothenate 97.3 0.00043 9.4E-09 65.2 5.7 113 214-334 32-150 (473)
34 COG4147 DhlC Predicted symport 96.9 0.0019 4.1E-08 62.8 6.3 79 248-326 61-140 (529)
35 PF05525 Branch_AA_trans: Bran 91.5 2.4 5.3E-05 41.6 11.4 99 68-189 229-327 (427)
36 PRK15433 branched-chain amino 87.3 7.8 0.00017 38.2 11.3 109 68-202 233-341 (439)
37 COG1114 BrnQ Branched-chain am 86.2 32 0.00069 33.7 14.5 100 67-189 230-329 (431)
38 TIGR00796 livcs branched-chain 84.9 39 0.00085 32.7 15.0 48 104-153 251-298 (378)
39 PF13520 AA_permease_2: Amino 80.4 41 0.0009 32.5 13.3 40 110-151 260-299 (426)
40 PRK10746 putative transport pr 79.4 52 0.0011 32.6 13.8 40 108-149 269-308 (461)
41 PRK11017 codB cytosine permeas 78.2 70 0.0015 31.1 16.0 42 12-54 136-177 (404)
42 PRK11021 putative transporter; 75.8 47 0.001 32.2 12.1 40 107-148 245-284 (410)
43 TIGR00814 stp serine transport 70.6 1.1E+02 0.0024 29.8 16.1 36 8-43 134-169 (397)
44 PRK10435 cadB lysine/cadaverin 69.6 67 0.0014 31.4 11.6 41 106-148 254-294 (435)
45 PRK10238 aromatic amino acid t 68.7 1.2E+02 0.0027 29.8 14.1 41 108-150 269-309 (456)
46 PRK11049 D-alanine/D-serine/gl 66.8 1.4E+02 0.003 29.6 15.1 29 122-150 292-320 (469)
47 PF03845 Spore_permease: Spore 65.4 20 0.00043 33.5 6.7 61 267-327 38-98 (320)
48 TIGR00905 2A0302 transporter, 62.4 90 0.0019 30.9 11.1 39 110-150 270-308 (473)
49 TIGR00912 2A0309 spore germina 61.7 15 0.00033 34.8 5.3 51 274-324 47-97 (359)
50 PRK10644 arginine:agmatin anti 60.8 1.3E+02 0.0027 29.6 11.7 39 107-147 259-297 (445)
51 TIGR00909 2A0306 amino acid tr 58.9 1.7E+02 0.0037 28.3 12.2 44 105-150 261-304 (429)
52 KOG1304|consensus 53.3 2.4E+02 0.0053 28.0 12.5 107 74-201 284-391 (449)
53 PRK10249 phenylalanine transpo 52.7 2.4E+02 0.0052 27.8 13.8 38 110-149 280-317 (458)
54 TIGR03810 arg_ornith_anti argi 51.0 2.6E+02 0.0055 27.6 12.6 37 112-150 268-304 (468)
55 PRK11357 frlA putative fructos 50.7 1.9E+02 0.0041 28.2 11.1 27 122-148 278-304 (445)
56 TIGR00837 araaP aromatic amino 50.6 2.3E+02 0.005 26.9 13.9 75 109-193 254-328 (381)
57 PRK10655 potE putrescine trans 49.8 2E+02 0.0043 28.0 11.1 40 107-148 257-296 (438)
58 COG0833 LysP Amino acid transp 49.6 2.1E+02 0.0046 29.1 11.0 85 121-208 322-410 (541)
59 PRK11375 allantoin permease; P 48.9 2.9E+02 0.0063 27.6 14.9 39 13-53 175-213 (484)
60 PRK00701 manganese transport p 47.6 2.9E+02 0.0063 27.3 12.8 60 113-179 299-358 (439)
61 PRK11387 S-methylmethionine tr 46.9 3E+02 0.0064 27.2 13.8 38 110-149 277-314 (471)
62 PRK15049 L-asparagine permease 44.9 3.3E+02 0.0072 27.2 13.9 41 107-149 288-328 (499)
63 TIGR00906 2A0303 cationic amin 44.9 1.9E+02 0.0042 29.5 10.3 80 106-190 297-380 (557)
64 KOG2348|consensus 41.0 13 0.00028 36.8 1.0 106 220-335 53-160 (667)
65 TIGR01197 nramp NRAMP (natural 40.5 1.8E+02 0.004 28.3 8.9 57 113-176 285-341 (390)
66 TIGR02358 thia_cytX probable h 40.2 3.5E+02 0.0076 26.1 15.7 34 10-43 126-159 (386)
67 TIGR00908 2A0305 ethanolamine 40.2 1.9E+02 0.0041 28.2 9.2 43 106-148 258-300 (442)
68 PRK10580 proY putative proline 39.4 3.8E+02 0.0082 26.3 14.2 29 122-150 280-308 (457)
69 KOG1287|consensus 36.5 2.2E+02 0.0048 28.6 8.8 104 104-217 269-383 (479)
70 TIGR00910 2A0307_GadC glutamat 36.2 2.4E+02 0.0051 28.4 9.3 28 123-150 281-308 (507)
71 PF07907 YibE_F: YibE/F-like p 35.0 3.4E+02 0.0075 24.5 10.9 49 123-174 123-171 (244)
72 TIGR00800 ncs1 NCS1 nucleoside 35.0 4.4E+02 0.0096 25.8 14.8 23 11-33 155-177 (442)
73 PF01566 Nramp: Natural resist 34.8 4E+02 0.0087 25.2 10.8 42 114-157 245-286 (358)
74 TIGR00913 2A0310 amino acid pe 32.6 4.9E+02 0.011 25.6 14.4 29 122-150 287-315 (478)
75 PRK15238 inner membrane transp 31.3 5E+02 0.011 25.8 10.8 15 64-78 245-259 (496)
76 PRK10836 lysine transporter; P 29.7 5.6E+02 0.012 25.4 14.3 29 122-150 294-322 (489)
77 TIGR03813 put_Glu_GABA_T putat 28.4 5.8E+02 0.013 25.1 10.9 27 122-148 278-304 (474)
78 COG1953 FUI1 Cytosine/uracil/t 26.7 6.8E+02 0.015 25.3 13.1 43 10-53 185-227 (497)
79 KOG4812|consensus 26.4 2.2E+02 0.0048 25.8 6.2 57 163-234 148-204 (262)
80 PRK12884 ubiA prenyltransferas 26.2 4.9E+02 0.011 23.6 9.7 53 139-191 43-102 (279)
81 COG1113 AnsP Gamma-aminobutyra 25.1 2.2E+02 0.0049 28.3 6.6 84 122-207 284-370 (462)
82 PF00324 AA_permease: Amino ac 24.3 1E+02 0.0022 30.5 4.3 45 112-158 278-325 (478)
83 COG1914 MntH Mn2+ and Fe2+ tra 23.9 7.1E+02 0.015 24.5 18.1 79 122-208 284-362 (416)
84 PF11902 DUF3422: Protein of u 23.4 59 0.0013 32.0 2.3 26 288-313 287-312 (420)
85 TIGR00837 araaP aromatic amino 21.8 1.4E+02 0.0031 28.3 4.7 27 290-316 58-84 (381)
86 PF10826 DUF2551: Protein of u 21.3 1.2E+02 0.0026 22.6 3.0 29 289-317 27-55 (83)
87 PF02133 Transp_cyt_pur: Perme 20.6 7.8E+02 0.017 23.8 10.1 41 11-53 152-192 (440)
88 KOG4112|consensus 20.5 4E+02 0.0087 20.4 6.3 44 152-195 5-50 (101)
89 KOG1303|consensus 20.1 8.6E+02 0.019 24.1 10.0 111 64-199 261-376 (437)
No 1
>KOG2349|consensus
Probab=100.00 E-value=2.6e-35 Score=288.79 Aligned_cols=229 Identities=30% Similarity=0.555 Sum_probs=210.6
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCcchH-------------------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIES------------------- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~------------------- 63 (336)
+++|.+||..||+|||+|||++|.++|+.+...+...+..+ .||.++++|...++++.++
T Consensus 165 ~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~-vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~ 243 (585)
T KOG2349|consen 165 GLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMK-VGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLF 243 (585)
T ss_pred HHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehh-cCcccceeeecccCCceeecccccCCCcccccchhHhc
Confidence 45678999999999999999999999999999999999999 9999999998765433210
Q ss_pred -----------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHH
Q psy15005 64 -----------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYV 114 (336)
Q Consensus 64 -----------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~ 114 (336)
|++++.+..+..++.....++|+..|++|++|||..++..+++|+++|.++
T Consensus 244 Gg~~~~l~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV 323 (585)
T KOG2349|consen 244 GGTIMWLSYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFV 323 (585)
T ss_pred CCcHHHHHHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHH
Confidence 788899999999999999999999999999999999998999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15005 115 LNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERL 194 (336)
Q Consensus 115 ~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~ 194 (336)
++.+|+.||+.|++++++++|.|||.+|.+||.|+.+.+|++||..| +.||||..+.+|+.+++.|++++.+++..++.
T Consensus 324 ~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD~ik~~~k-~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~ 402 (585)
T KOG2349|consen 324 MDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLEDYIKPLRK-PLSERELNIAMRLFVVVLGLISIGLAFVVELL 402 (585)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CcChHHHhhhhheeeeeehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 89999999999999999999999999999988
Q ss_pred hhHHHHHHHhheee--------ecCcCccccccCCcchhhheeehhhcc
Q psy15005 195 GSVLQVVSFITAIE--------LLGNPSEFYNHGSQFFLICISFVLVVP 235 (336)
Q Consensus 195 ~~i~~~~~~~~g~~--------llGl~~~~~~~~~~g~~~~i~~gl~~s 235 (336)
+++++..+++.|+. .+|+|+++ .|.+++.+++..|+.+.
T Consensus 403 ~~vlq~~~si~g~~~gP~~gvF~Lgmf~pr--~N~kgA~~Gli~~~~~~ 449 (585)
T KOG2349|consen 403 QQVLQYSQSIFGYLGGPLLGVFVLGMFVPR--VNEKGALVGLIAGLLLM 449 (585)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhccc--cCCcchhHHHHHHHHHH
Confidence 89999999888876 77888984 68899998888887776
No 2
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=100.00 E-value=1.3e-32 Score=267.51 Aligned_cols=222 Identities=25% Similarity=0.281 Sum_probs=181.4
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhcccC--------cch------------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTN--------RIE------------ 62 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~--------~~~------------ 62 (336)
++++++||..||+|+++|||++|+++|+++.+++.+..+.+ .||++++.++.++.+ .++
T Consensus 124 ~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~~~-~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (407)
T TIGR00813 124 GAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSE-VGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPW 202 (407)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCCh
Confidence 44677999999999999999999999999999998888888 899988876553311 000
Q ss_pred --------------------H------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccc-cCCCccc
Q psy15005 63 --------------------S------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHI-IHGSDQM 109 (336)
Q Consensus 63 --------------------~------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~d~~ 109 (336)
+ ||+.+++.....++..+..++|+.+++.+++.+|..++. .+++|++
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~ 282 (407)
T TIGR00813 203 GAGVFGLPHVALWYWTNQVIVQRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQA 282 (407)
T ss_pred HHHHhChHHHHHHHhcCHHHhhHHHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhH
Confidence 1 788888888778888899999999999998755533211 2479999
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy15005 110 LPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIP-ENKGAVISKYLSILYGVISFLLI 188 (336)
Q Consensus 110 ~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s-~~~~~~~~R~~~vv~~i~~i~~a 188 (336)
+|.++++.+| ||+.|+++++++||.|||+||.+|+.|+.++||+||++.|||.+ ||++++.+|+.++++++++.+++
T Consensus 283 ~p~~~~~~lp--~~l~gl~~agilaA~mST~~s~l~a~ss~~~~Di~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~ 360 (407)
T TIGR00813 283 YPLLVQELMP--PGLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLYKKIIRPNASGEKKIVMRGRIAVLVAAVIAGFVA 360 (407)
T ss_pred HHHHHHHHcC--cchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999999999999988887 88899999999999999999866
Q ss_pred HHHhhhhhHHHHH---HHhhe-ee----ecCcCccccccCCcchhhheeeh
Q psy15005 189 FIVERLGSVLQVV---SFITA-IE----LLGNPSEFYNHGSQFFLICISFV 231 (336)
Q Consensus 189 ~~~~~~~~i~~~~---~~~~g-~~----llGl~~~~~~~~~~g~~~~i~~g 231 (336)
.. +.+++.++. +...+ .. ++|++||| .|++++++++..|
T Consensus 361 ~~--~~~~i~~~~~~~~~~~~~~~~~pl~lgl~w~r--~~~~ga~~~~i~G 407 (407)
T TIGR00813 361 AA--QGGQVLQYVQEAFGGLGAPFLPVFLLGIFWKR--MNAKGALAGMIAG 407 (407)
T ss_pred Hc--CCchHHHHHHHHHHHhcchHHHHHHHHHhcCc--CChHhHHHHhhcC
Confidence 53 334454433 33321 11 89999995 6999999988765
No 3
>PRK10484 putative transporter; Provisional
Probab=100.00 E-value=1.9e-32 Score=274.21 Aligned_cols=222 Identities=19% Similarity=0.269 Sum_probs=178.3
Q ss_pred EEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------hhhhhhhhccc--------CcchH------
Q psy15005 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGG------FSQIWEDSTST--------NRIES------ 63 (336)
Q Consensus 4 ~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG------~~~~~~~~~~~--------~~~~~------ 63 (336)
+++++||..||+|||+|||++|+++|+++.+++.+.++.+ .|| +++..+..++. +...+
T Consensus 170 ~i~~~Yt~~GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~~-~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 248 (523)
T PRK10484 170 IIGAIYAVFGGLKAVAVSDTINGIGLLIGGLLVPVFGLIA-LGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTG 248 (523)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHH
Confidence 4568999999999999999999999999988887777666 332 22222211110 00000
Q ss_pred ----------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHH
Q psy15005 64 ----------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVL 115 (336)
Q Consensus 64 ----------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~ 115 (336)
||+..++.....+......++|+.++..+|+. .++||+++|.++.
T Consensus 249 ~~~~~~~~~~~~q~~~qR~~aak~~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~-------~~~~d~~~p~~~~ 321 (523)
T PRK10484 249 LILVNLFYWCTNQSIVQRALGAKNLAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDG-------LPNADMAYPTLVN 321 (523)
T ss_pred HHHHHHHHHhCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------cCChhhHHHHHHH
Confidence 78888887777777778889999999988742 2478999999999
Q ss_pred HHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-h
Q psy15005 116 NVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVER-L 194 (336)
Q Consensus 116 ~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~-~ 194 (336)
+.+| |++.|+++++++||.|||+||.+|++|+.++||+|||+.|||+||||+++++|+.+++++++++.+++...+ .
T Consensus 322 ~~lp--~~l~Gl~~a~ilAA~mST~~s~l~s~st~~t~Diy~~~~~~~~s~~~~l~v~Ri~~vv~~ii~~~~a~~~~~~~ 399 (523)
T PRK10484 322 DVLP--VPLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIYKPIINPNASEKQLVKVGKKFGFVLAIISMIVAPLIANAP 399 (523)
T ss_pred HHcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999975432 3
Q ss_pred hhHHHHHHHhhee--------eecCcCccccccCCcchhhheeehhhcccc
Q psy15005 195 GSVLQVVSFITAI--------ELLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 195 ~~i~~~~~~~~g~--------~llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
++++++.....|. +++|++||| .|++|+++++..|..+...
T Consensus 400 ~~i~~~~~~~~~~~~~pl~~~~llgl~wkr--~n~~ga~~g~i~G~~~~~~ 448 (523)
T PRK10484 400 QGLYSYLQQLNGIYNVPILAIIIVGFFTKR--VPALAAKVALGFGIILYII 448 (523)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhCc--CChHHHHHHHHHHHHHHHH
Confidence 4566655433333 278999995 7999999999999887643
No 4
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=100.00 E-value=1.1e-32 Score=274.46 Aligned_cols=229 Identities=15% Similarity=0.149 Sum_probs=176.2
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhcccC--c------chH-----------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTN--R------IES----------- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~--~------~~~----------- 63 (336)
++++++||..||+|||+|||++|+++|+++.+++....+.+ .||+++.++...+.+ + .++
T Consensus 168 ~~iv~iYt~~GGl~aV~~TD~iQ~~imi~g~i~~~~~~~~~-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (502)
T PRK15419 168 AAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIIS-VGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGL 246 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhcCccccCcccCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999998888888888 899998877553211 1 000
Q ss_pred ---------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHhccCC
Q psy15005 64 ---------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYT 122 (336)
Q Consensus 64 ---------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~lp~~~ 122 (336)
|++...+.....+......++|+.++..++..+.......+++|+++|+++.+.+| |
T Consensus 247 g~~~~p~~~qR~~aak~~~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp--~ 324 (502)
T PRK15419 247 GYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFN--P 324 (502)
T ss_pred HHcCChHHHHhheecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcC--H
Confidence 23333333333333445567777777776643211111124789999999999999 9
Q ss_pred ChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHH
Q psy15005 123 GIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVER-LGSVLQVV 201 (336)
Q Consensus 123 ~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~-~~~i~~~~ 201 (336)
++.|+++++++||.|||+||.+|+.|+.++||+|||+.||+.+|||+++++|+.+++++++++.+++..++ ..++....
T Consensus 325 ~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy~~~~~~~~s~~~~l~~~Ri~~v~~~~~a~~~a~~~~~~i~~l~~~~ 404 (502)
T PRK15419 325 WIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYA 404 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998875332 22344444
Q ss_pred HHhh-eee----ecCcCccccccCCcchhhheeehhhccc
Q psy15005 202 SFIT-AIE----LLGNPSEFYNHGSQFFLICISFVLVVPL 236 (336)
Q Consensus 202 ~~~~-g~~----llGl~~~~~~~~~~g~~~~i~~gl~~s~ 236 (336)
+... +.+ ++|++||| .|++|+++++..|...++
T Consensus 405 ~~~~~~~~~p~~llgl~wkr--~t~~ga~~g~i~G~~~~~ 442 (502)
T PRK15419 405 WAGFGAAFGPVVLFSVMWSR--MTRNGALAGMIIGALTVI 442 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHH
Confidence 4332 222 68999995 699999999999988774
No 5
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=99.98 E-value=1.5e-32 Score=272.76 Aligned_cols=226 Identities=14% Similarity=0.170 Sum_probs=179.2
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhccc--Ccch---------H--------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTST--NRIE---------S-------- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~--~~~~---------~-------- 63 (336)
++++++||.+||+|||+|||++|+++|+++.+++....+.+ .||+++++++..+. ++++ +
T Consensus 164 ~~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~-~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (487)
T TIGR02121 164 ALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFN-LGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWGL 242 (487)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999998888888888 89999987765321 1110 0
Q ss_pred ---------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHhccCC
Q psy15005 64 ---------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYT 122 (336)
Q Consensus 64 ---------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~lp~~~ 122 (336)
||+..++.....+..+...++|+.+...+++.++. ..+++|+++|.++++.+| |
T Consensus 243 g~~~~p~~~qR~~aaks~k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~---~~~~~d~~~~~~~~~~~p--~ 317 (487)
T TIGR02121 243 GYFGQPHIIVRFMAIRSHKELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHV---ELVDRETIFIVLSQILFH--P 317 (487)
T ss_pred HhccchHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc---cCCCcchhHHHHHHHhcc--H
Confidence 77777776555555555677777777776643211 124689999999999999 9
Q ss_pred ChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHH
Q psy15005 123 GIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVER-LGSVLQVV 201 (336)
Q Consensus 123 ~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~-~~~i~~~~ 201 (336)
++.|+++++++||.|||+||.+|+.|+.++||+||++.||++||||+++++|+.+++++++++.+++..++ ..++..+.
T Consensus 318 ~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy~~~~~~~~s~~~~l~v~R~~~v~~~~~~~~~a~~~~~~i~~l~~~~ 397 (487)
T TIGR02121 318 WIAGILLAAILAAIMSTISSQLLVSSSALTEDFYKAFFKREASQKELVMVGRLSVLVIAIIAIILAMNPNSSILNLVGYA 397 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999975321 12232333
Q ss_pred HHh-heee----ecCcCccccccCCcchhhheeehhhccc
Q psy15005 202 SFI-TAIE----LLGNPSEFYNHGSQFFLICISFVLVVPL 236 (336)
Q Consensus 202 ~~~-~g~~----llGl~~~~~~~~~~g~~~~i~~gl~~s~ 236 (336)
+.. .+.+ ++|++||+ .|++|+++++..|..+..
T Consensus 398 ~~~~~~~~~p~~llgl~w~r--~t~~ga~~g~i~G~~~~~ 435 (487)
T TIGR02121 398 WAGFGAAFGPVVLFSLYWKR--MTRNGALAGMIIGAVTVI 435 (487)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHH
Confidence 332 2222 68999995 699999999999988763
No 6
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=99.97 E-value=3.7e-32 Score=264.27 Aligned_cols=224 Identities=20% Similarity=0.300 Sum_probs=160.2
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhccc----------Ccc-------hH--
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTST----------NRI-------ES-- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~----------~~~-------~~-- 63 (336)
++++++||..||+|+|+|||++|+++|+++.+++.+..+.+ .||++++.++..+. +.. ..
T Consensus 128 ~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~~~~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (406)
T PF00474_consen 128 GVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIVVLIFVLSA-VGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLS 206 (406)
T ss_dssp HHHHHHTTCTT------SHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS
T ss_pred HHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHhhhccchh-cCCchhhHHHHhhcCcccccccCCCCcccccchhhhHH
Confidence 34567899999999999999999999999999999999999 88988876654321 000 00
Q ss_pred ----------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHH
Q psy15005 64 ----------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVL 115 (336)
Q Consensus 64 ----------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~ 115 (336)
||+...+.....++.....+.|+.+.+..+..++...++.+++|+++|.+++
T Consensus 207 ~~~~~~~g~~~~p~~~qR~~aak~~~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (406)
T PF00474_consen 207 FWIALMLGTFGAPHFWQRFLAAKSPKTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAA 286 (406)
T ss_dssp -TTHHHHSTHHH-HHHHHHHSSSHHHHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT
T ss_pred HHHHHHhhhccchHHHHHHHhcCCHHHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhh
Confidence 6777777666666666666777776655443222222234678999999999
Q ss_pred HHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15005 116 NVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQ-IPENKGAVISKYLSILYGVISFLLIFIVERL 194 (336)
Q Consensus 116 ~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~-~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~ 194 (336)
+++| |++.|+++++++||.|||+||.+|+.+++++||+|+++.||+ .||||+++.+|+.+++++++++++++..++.
T Consensus 287 ~~~p--~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~~Di~~~~~~~~~~s~~~~~~~~ri~~~v~~~i~~~la~~~~~~ 364 (406)
T PF00474_consen 287 QYLP--PGLAGLFLAGILAAIMSTADSLLLAISSIFSRDIYKPFIKPNSASEKQLLRVSRIAIVVIGIIAILLALFFPDS 364 (406)
T ss_dssp -TS---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-SS-S-SSHHHHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred hhcc--chhHHHHHHHHHHhhhHHHHHHHhhhhhhhhHHhhhccccccccchhhhhhccceeEEeeHHhHHHHHhccccc
Confidence 9999 999999999999999999999999999999999999999888 8999999999999999999999999865543
Q ss_pred --hhHHHHHHHhh-ee-e---ecCcCccccccCCcchhhheeeh
Q psy15005 195 --GSVLQVVSFIT-AI-E---LLGNPSEFYNHGSQFFLICISFV 231 (336)
Q Consensus 195 --~~i~~~~~~~~-g~-~---llGl~~~~~~~~~~g~~~~i~~g 231 (336)
..+....+... +. . ++|++||| .|++|+++++..|
T Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~gl~wkr--~t~~ga~~~~i~G 406 (406)
T PF00474_consen 365 GIIDLILFAFGILAAPFFPPLLLGLYWKR--ATKRGAIAGMIVG 406 (406)
T ss_dssp SHHHHHHHHHTTTHHHHHHHHHHHHH-TT----HHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCHHHHhhheeeC
Confidence 23333333322 11 1 89999995 6999999988765
No 7
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.97 E-value=4.3e-31 Score=261.47 Aligned_cols=222 Identities=20% Similarity=0.231 Sum_probs=180.6
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhccc-----------Ccch------H--
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTST-----------NRIE------S-- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~-----------~~~~------~-- 63 (336)
++++++||..||+||++|||++|+++|+++.+++....+.+ .||+++..++..+. +..+ +
T Consensus 165 ~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~-~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
T TIGR02119 165 SSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKA-GGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWI 243 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHH
Confidence 34578999999999999999999999999999988888888 89998877654321 1000 0
Q ss_pred -------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHh
Q psy15005 64 -------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVL 118 (336)
Q Consensus 64 -------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~l 118 (336)
||+..++.....++.....++|+.+++.+|+. ++||+++|+++.+.+
T Consensus 244 ~~~~g~~~~p~~~~R~~aak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~--------~~~d~~~p~~~~~~l 315 (471)
T TIGR02119 244 LVGIGVIGLPQTAVRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDL--------TVPDKVIPLLAIKVL 315 (471)
T ss_pred HHHHHHhCchHHHHHHHhcCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCC--------CCccchHHHHHHHHc
Confidence 78888887777777777888998888877642 468999999999999
Q ss_pred ccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh-H
Q psy15005 119 GKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGS-V 197 (336)
Q Consensus 119 p~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~-i 197 (336)
| |++.|+++++++||.|||+||.+|++|+.++||+||++.||+.+|||++|++|+.+++++++++.+++..++... .
T Consensus 316 p--~~~~gl~~a~llaA~mST~~s~l~~~ss~~~~Diy~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~a~~~~~~~~~~ 393 (471)
T TIGR02119 316 P--PILAGIFLAAPMAAIMSTVNSLLLQSSSTIIKDLYLNYIPKEAKESKIKKISMCITLIIGLLVIIAAIKPPDLIIWL 393 (471)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999998875332211 1
Q ss_pred HHHHHH-hheee----ecCcCccccccCCcchhhheeehhhcccc
Q psy15005 198 LQVVSF-ITAIE----LLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 198 ~~~~~~-~~g~~----llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
....+. ..+.+ ++|++||| .|++++++++..|..+.+.
T Consensus 394 ~~~~~~~~~~~~~~plllgl~w~r--~t~~ga~~~~i~G~~~~~~ 436 (471)
T TIGR02119 394 NLFAFGGLEAAFIWPIVLGLYWKR--ANATGALASMIVGVGSYIT 436 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHH
Confidence 111121 11222 89999995 7999999999999887643
No 8
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=99.97 E-value=8.9e-31 Score=259.96 Aligned_cols=221 Identities=20% Similarity=0.234 Sum_probs=180.5
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhccc-----------Ccch------H--
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTST-----------NRIE------S-- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~-----------~~~~------~-- 63 (336)
++++++||.+||+|+++|||++|+++|+++.+++.+..+.+ .||+++.+++..+. +..+ +
T Consensus 166 ~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~-~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (483)
T PRK09442 166 GITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHA-GGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWI 244 (483)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHH
Confidence 34568999999999999999999999999999888888888 89998887765321 0010 0
Q ss_pred -------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHh
Q psy15005 64 -------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVL 118 (336)
Q Consensus 64 -------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~l 118 (336)
||+.+++.....++.....++|+.+++.+|+. +++|+++|.++++.+
T Consensus 245 ~~~~g~~~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~--------~~~~~~~p~l~~~~l 316 (483)
T PRK09442 245 LVCFGVIGLPHTAVRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDL--------TVPDKVIPTLMLKVL 316 (483)
T ss_pred HHHHHHhCCCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------CCccchHHHHHHHHc
Confidence 88888888877788888899999988887642 358999999999999
Q ss_pred ccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Q psy15005 119 GKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQ--IPENKGAVISKYLSILYGVISFLLIFIVERLG- 195 (336)
Q Consensus 119 p~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~--~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~- 195 (336)
| ||+.|+++++++||.|||+||.+|+.++.++||+||+ .+|+ .||||+++++|+.+++++++++.+|+..++..
T Consensus 317 p--~~l~gl~~a~~~aA~mST~~s~l~~~ss~~~~Di~~~-~~~~~~~s~~~~~~v~r~~~~~~~~~~~~~a~~~~~~~~ 393 (483)
T PRK09442 317 P--PFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLYLN-IRPDQIANEKKLKRISLIITLILGLLVLLAALKPPDMII 393 (483)
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 9 9999999999999999999999999999999999999 6666 79999999999999999999999998544321
Q ss_pred hHHHHHHH-hheee----ecCcCccccccCCcchhhheeehhhcccc
Q psy15005 196 SVLQVVSF-ITAIE----LLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 196 ~i~~~~~~-~~g~~----llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
.+..+.+. ..+.+ ++|++||| .|++++++++..|......
T Consensus 394 ~~~~~~~~~~~~~~~~p~~lgl~w~r--~~~~ga~~~~i~G~~~~~~ 438 (483)
T PRK09442 394 WLNLFAFGGLEAVFLWPIVLGLYWER--ANATGALASMIVGLVSYLL 438 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHH
Confidence 11112221 11222 78999995 6999999999999887743
No 9
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=99.97 E-value=1.9e-30 Score=260.74 Aligned_cols=237 Identities=19% Similarity=0.170 Sum_probs=183.0
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhccc----------C-----cchH----
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTST----------N-----RIES---- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~----------~-----~~~~---- 63 (336)
++++++||.+|||||++|||++|+++|+++.+++......+..||+++.+++..+. + ..++
T Consensus 188 ~~i~~~Yt~~GGm~av~~td~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (549)
T TIGR02711 188 GILMVMYVLFGGMLATTWVQIIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLG 267 (549)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHH
Confidence 45678999999999999999999999999999888877777345787776543110 0 0010
Q ss_pred --------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccc---cccCCCccchHHHH
Q psy15005 64 --------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTK---HIIHGSDQMLPLYV 114 (336)
Q Consensus 64 --------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~~~d~~~p~~~ 114 (336)
||+..++.....+++....++|+.++..++..++..+ ....++|.+.|.+.
T Consensus 268 ~~~~lg~~g~P~~~~R~~taks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 347 (549)
T TIGR02711 268 LGLMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLA 347 (549)
T ss_pred HHHHHHhcCCchhheeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHH
Confidence 8888887776667777788899998887642111110 00134578888888
Q ss_pred HHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15005 115 LNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLA-VQIPENKGAVISKYLSILYGVISFLLIFIVER 193 (336)
Q Consensus 115 ~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~-~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~ 193 (336)
.+..| +++.|++.++++||.|||+||.+|+.|+.++||+|++++| |+++|||+++++|+.+++++++++.+++..++
T Consensus 348 ~~~~~--~~l~glv~A~~~AA~mST~~s~l~a~st~i~~Diy~~~~~~~~~s~~~~~~v~Ri~~vv~g~ia~~~a~~~~~ 425 (549)
T TIGR02711 348 NAVGG--NLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVIKKGKATERDELRVSKITVLILGVIAIGLGILFEN 425 (549)
T ss_pred HHHcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888 8999999999999999999999999999999999999885 47899999999999999999999999986543
Q ss_pred --hhhHHHHHHHhhee-----eecCcCccccccCCcchhhheeehhhcccccccccc
Q psy15005 194 --LGSVLQVVSFITAI-----ELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLP 243 (336)
Q Consensus 194 --~~~i~~~~~~~~g~-----~llGl~~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p 243 (336)
...+.++.+++.+. +++|++||| .|++|+++++..|+..++......|
T Consensus 426 ~~i~~l~~~~~~~~a~~~~p~lllgl~Wkr--~n~~GA~ag~i~G~~~~~~~~~~~p 480 (549)
T TIGR02711 426 QNIAFMVGLAFSIAASCNFPIILLSMYWSK--LTTRGAMIGGWLGLITAVVLMILGP 480 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHcCc
Confidence 22455555544332 279999995 6999999999999998865444444
No 10
>PRK12488 acetate permease; Provisional
Probab=99.97 E-value=3.6e-30 Score=258.69 Aligned_cols=230 Identities=19% Similarity=0.133 Sum_probs=179.3
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhccc-----------C----cchH----
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTST-----------N----RIES---- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~-----------~----~~~~---- 63 (336)
++++++||.+||||||+|||++|+++|+++.+++.+.++.+..||+++++++..++ + ..++
T Consensus 188 ~~i~~~Yt~~GGm~av~~td~iQ~~im~~~~i~~~~~~l~~~g~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 267 (549)
T PRK12488 188 GALMVLYVTFGGMLATTWVQIIKAVLLLSGTSFMAFMVLKHFGFSTEAMFASAVAVHAKGQAILAPGGLLSNPIDAISLG 267 (549)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcCCcccccCHHHHHHHH
Confidence 45678999999999999999999999999999888888888333787776643211 0 0010
Q ss_pred --------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCcc---ccccCCCccchHHHH
Q psy15005 64 --------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLT---KHIIHGSDQMLPLYV 114 (336)
Q Consensus 64 --------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~~~~d~~~p~~~ 114 (336)
||+..++.....++.....++|+.++..+++.+... +...+++|.+.|.+.
T Consensus 268 l~~~lg~~~~p~~~qR~~aaks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 347 (549)
T PRK12488 268 LGMMFGTAGLPHILMRFFTVSDAREARKSVLYATGFIGYFYLLIIVVGFGAIVMVGTEPSYRDAGGKIIGGGNMVAVHLA 347 (549)
T ss_pred HHHHHHhccCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhcccccccCCCcchhHHHhh
Confidence 788887766666666778899999999886321110 111234677888888
Q ss_pred HHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15005 115 LNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLA-VQIPENKGAVISKYLSILYGVISFLLIFIVER 193 (336)
Q Consensus 115 ~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~-~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~ 193 (336)
....| +++.|++.++++||.|||+||.+|++|++++||+|++++| |+.||||+++++|+.+++++++++.+++..++
T Consensus 348 ~~~~~--~~l~GlvaA~~~AA~mST~ss~lls~st~is~Diy~~~~~~~~~s~~~~l~v~Ri~~vvvgv~a~~~a~~~~~ 425 (549)
T PRK12488 348 QAVGG--NLFLGFISAVAFATILAVVAGLALSGASAVSHDLYACVIRKGQASEAQEMRVSKIATLGIGLLAVVLGLMFES 425 (549)
T ss_pred HHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHhhHHHHHHHHHHHHHHHHHHHccCC
Confidence 88889 9999999999999999999999999999999999999885 47899999999999999999999999986543
Q ss_pred h--hhHHHHHHHhhee-----eecCcCccccccCCcchhhheeehhhccc
Q psy15005 194 L--GSVLQVVSFITAI-----ELLGNPSEFYNHGSQFFLICISFVLVVPL 236 (336)
Q Consensus 194 ~--~~i~~~~~~~~g~-----~llGl~~~~~~~~~~g~~~~i~~gl~~s~ 236 (336)
. ..+..+.+++.+. +++|+|||+ .|++|+++++..|...++
T Consensus 426 ~~i~~l~~~~~~~~a~~~~p~lllgl~wkr--~t~~ga~ag~i~G~~~~~ 473 (549)
T PRK12488 426 QNIAFLSGLVLAIAASVNFPVLFLSMFWKG--LTTRGAVAGSYAGLVSAV 473 (549)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHH
Confidence 2 2333344444322 178999995 699999999999988874
No 11
>PRK09395 actP acetate permease; Provisional
Probab=99.96 E-value=5.6e-29 Score=250.44 Aligned_cols=231 Identities=19% Similarity=0.188 Sum_probs=176.3
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhccc----------C-c----chH----
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTST----------N-R----IES---- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~----------~-~----~~~---- 63 (336)
++++++||..||||||+|||++|+++|+++.+++...++.+..||+++++++..+. + . .+.
T Consensus 190 ~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (551)
T PRK09395 190 GVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFMVMKHVGFSFENLFSEAVAVHPKGLAIMGPGGLVKDPISALSLG 269 (551)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHH
Confidence 45678999999999999999999999999999888888777334788877654211 0 0 000
Q ss_pred --------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccc--cc-cCCCccchHHHH
Q psy15005 64 --------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTK--HI-IHGSDQMLPLYV 114 (336)
Q Consensus 64 --------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--~~-~~~~d~~~p~~~ 114 (336)
||+..++.....++.....++|+.++..+++.++..+ +. ..++|.+.+.+.
T Consensus 270 ~~~~~g~~~~p~~~qR~~aaks~k~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 349 (551)
T PRK09395 270 LALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAIVLVGTNPEFKDAAGALIGGNNMAAVHLA 349 (551)
T ss_pred HHHHHHhhcccHHHHhhhccCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccCCCcccHHHHHH
Confidence 7888877666666667788899999888753221111 01 122455566666
Q ss_pred HHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15005 115 LNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAV-QIPENKGAVISKYLSILYGVISFLLIFIVER 193 (336)
Q Consensus 115 ~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~-~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~ 193 (336)
....| +++.|++.++++||.|||+||.+|+.|++++||+|+++.|| +.||||+++++|+.+++++++++.+|+..++
T Consensus 350 ~~l~~--~~l~glv~A~~lAA~mST~ss~lla~st~~~~Diy~~~~~~~~~s~~~~l~v~Ri~~v~igi~a~~~a~~~~~ 427 (551)
T PRK09395 350 NAVGG--NLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVIKKGKATERDELRVSKITTLVLGVVAIILGILFEK 427 (551)
T ss_pred HHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhhhhHHHHHHHHHHHHHHHHHHccCC
Confidence 66677 88999999999999999999999999999999999998865 6899999999999999999999999986432
Q ss_pred --hhhHHHHHHHhheee-----ecCcCccccccCCcchhhheeehhhcccc
Q psy15005 194 --LGSVLQVVSFITAIE-----LLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 194 --~~~i~~~~~~~~g~~-----llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
...++++.+++.+.. ++|+|||| .|++|+++++..|...++.
T Consensus 428 ~~i~~~~~~~~~~~~~~~~p~lllglfwkr--~~~~gA~ag~i~G~~~~l~ 476 (551)
T PRK09395 428 QNIAFMVGLAFAIAASANFPVLLLSMYWKG--LTTRGAVIGGWLGLISAVV 476 (551)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchhhHHHHHHHHHHHHHH
Confidence 234445554433221 78999995 6999999999999888753
No 12
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=99.95 E-value=3.3e-28 Score=241.29 Aligned_cols=229 Identities=18% Similarity=0.237 Sum_probs=177.9
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhcccC------cch--------------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTN------RIE-------------- 62 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~------~~~-------------- 62 (336)
+.++++||.+||+|+|.|||.+|+.+|.+++..+......+ .||+++..+...+.+ +.+
T Consensus 163 ~~~v~~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (493)
T COG0591 163 ALIVALYTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLIL-FGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAW 241 (493)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHhcccccccCcccccchHHHHHHHHHH
Confidence 35678999999999999999999999999999999999998 899887766543221 110
Q ss_pred -------H------------------HHHHHHHhhHHHHHHHH-HHHHHHHHHHHhcCCCCccccccCCCccchHHHHHH
Q psy15005 63 -------S------------------LIALWVSAVGLILIYCI-NAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLN 116 (336)
Q Consensus 63 -------~------------------r~a~~~~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~ 116 (336)
+ ||....+.....+..+. ...+|....+.+++.++ ......++|+++|.++.+
T Consensus 242 ~~~~l~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 320 (493)
T COG0591 242 GTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPD-LSVPLLNPELVFPYLILA 320 (493)
T ss_pred HHHHhhhhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccCCCHHHHHHHHHHH
Confidence 0 33334444443333333 36777777777664322 111224789999999999
Q ss_pred HhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Q psy15005 117 VLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLG- 195 (336)
Q Consensus 117 ~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~- 195 (336)
.+| ||+.|+++++++||.|||+|+.+++.|+.++||+||++.|||++||+.++++|..+++++.++..+++..++..
T Consensus 321 ~~p--~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~Diyk~~~~~~a~~k~l~~i~r~~v~vi~~~a~~~a~~~~~~i~ 398 (493)
T COG0591 321 LFP--PWIAGLLLAAILAAVMSTASSQLLVASSAITRDIYKRFLRKNASEKELVRIGRVVVLVIALLALLLALLPPSSIL 398 (493)
T ss_pred HCh--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCChhHhhHHHHHHHHHHHHHHHHHHHcCchhHH
Confidence 999 99999999999999999999999999999999999999999999999999999999999999999887644322
Q ss_pred hHHHHHHHhhe-ee----ecCcCccccccCCcchhhheeehhhcccc
Q psy15005 196 SVLQVVSFITA-IE----LLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 196 ~i~~~~~~~~g-~~----llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
.+..+.+...+ .+ ++|++|| |.||+|+..++..|....+.
T Consensus 399 ~l~~~~~~g~~a~~~p~~~~~L~wk--r~t~~ga~agmi~G~i~~~~ 443 (493)
T COG0591 399 GLVSLALAGFGAQFLPALLLGLFWK--RATKRGAIAGMIAGLIVVLL 443 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeec--cchHhHHHHHHHHHHHHHHH
Confidence 24444443333 22 8999999 47999999999999888754
No 13
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=99.95 E-value=5.9e-29 Score=228.20 Aligned_cols=219 Identities=21% Similarity=0.262 Sum_probs=184.3
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhcccC----------c-c------hH--
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTN----------R-I------ES-- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~----------~-~------~~-- 63 (336)
+..+.+||.+||.|||++||.+|+.+|+++-++++.-.+.. .||.++..+++.+-+ + + +|
T Consensus 164 a~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~-~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwi 242 (473)
T COG4145 164 AVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYA-GGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWI 242 (473)
T ss_pred HHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHH
Confidence 44567899999999999999999999999999999998888 999999988775311 1 1 11
Q ss_pred -------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHh
Q psy15005 64 -------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVL 118 (336)
Q Consensus 64 -------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~l 118 (336)
++++..+.....++.+..-..|..+++..|+. +.+|++.|.++.+.+
T Consensus 243 lv~~gvlglP~t~vr~ia~kDskaih~gmiigt~vi~il~~gmhl~G~~graViPdl--------t~~D~Vip~lalkvl 314 (473)
T COG4145 243 LVCFGVLGLPHTAVRCIAFKDSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDL--------TVVDLVIPTLALKVL 314 (473)
T ss_pred HHHHHHhcCcHHHHHHHhccchhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCC--------CccchhHHHHHHHhc
Confidence 45567777777777888889999999999865 469999999999999
Q ss_pred ccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy15005 119 GKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVL 198 (336)
Q Consensus 119 p~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~ 198 (336)
| |...|+++++.+||+|||+||+++-.||.+.+|+|.++..++.+||+..+++|+.+++++.+-++.|+..+ +-+.
T Consensus 315 p--p~~agifl~apmaAiMSTIds~L~~~sstliKdLy~~~~~~~~~E~ki~~is~~~t~i~~~l~~i~al~Pp--~~ii 390 (473)
T COG4145 315 P--PFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLYLNVRDKLKNERKIKRISMIATLIFGALLLIAALNPP--EMII 390 (473)
T ss_pred c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCc--ceee
Confidence 9 99999999999999999999999999999999999988766788999999999999999999999888532 2222
Q ss_pred H-HHHHhheee-------ecCcCccccccCCcchhhheeehhhccc
Q psy15005 199 Q-VVSFITAIE-------LLGNPSEFYNHGSQFFLICISFVLVVPL 236 (336)
Q Consensus 199 ~-~~~~~~g~~-------llGl~~~~~~~~~~g~~~~i~~gl~~s~ 236 (336)
. ..+++.|.. ++|++|++ .|+.|+.++|..|+....
T Consensus 391 wlnlfAfggle~~Fl~plvlgLYw~k--aNa~ga~aSMi~g~~~y~ 434 (473)
T COG4145 391 WLNLFAFGGLEAVFLWPLVLGLYWEK--ANAAGALASMIVGLVLYV 434 (473)
T ss_pred eeehhhhcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHH
Confidence 2 234555553 89999995 699999999999988873
No 14
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=225.05 Aligned_cols=232 Identities=19% Similarity=0.231 Sum_probs=183.7
Q ss_pred eEEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhcc-----------c------CcchH-
Q psy15005 2 VYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTS-----------T------NRIES- 63 (336)
Q Consensus 2 ~~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~-----------~------~~~~~- 63 (336)
.++++.+|+++||||+++||+++|.++++.+..+...+...+..|++....+...+ + +++++
T Consensus 161 g~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~i 240 (529)
T COG4147 161 GGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFI 240 (529)
T ss_pred HhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHH
Confidence 45677899999999999999999999999999999888888845554443332111 0 11121
Q ss_pred -----------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCC-CC--------------cc
Q psy15005 64 -----------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTC-DP--------------LT 99 (336)
Q Consensus 64 -----------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~--------------~~ 99 (336)
||+..|+......++.....+|..++....+. .. ..
T Consensus 241 sl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~ 320 (529)
T COG4147 241 SLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANG 320 (529)
T ss_pred HHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccc
Confidence 89999999888889999999998888766521 11 01
Q ss_pred ccccCCCccchHHHHHHHh-ccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q psy15005 100 KHIIHGSDQMLPLYVLNVL-GKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSI 178 (336)
Q Consensus 100 ~~~~~~~d~~~p~~~~~~l-p~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~v 178 (336)
.+.....|.+.+....+.- | +|+.|++.++.+|++|||+++++++.+|.++||+|.+.+||+++|||+++++|+.++
T Consensus 321 ~gi~~~~n~a~vlaa~~i~~g--~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v 398 (529)
T COG4147 321 DGIGGWTNMAAVLAAPAIGGG--PWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVV 398 (529)
T ss_pred cccccccchHHHhhhHHhcCC--ceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHH
Confidence 1111223667777666655 5 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHhheee-----ecCcCccccccCCcchhhheeehhhcccc
Q psy15005 179 LYGVISFLLIFIVER-LGSVLQVVSFITAIE-----LLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 179 v~~i~~i~~a~~~~~-~~~i~~~~~~~~g~~-----llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
+.++++..++++.+. ...+..+++++.+.. ++|+|||+ .|+.|+++++..|+..++.
T Consensus 399 ~~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvivlglfWKr--~n~~GAi~G~~~GL~~tlv 461 (529)
T COG4147 399 ILGVVAILLGILPPGNVAFLVALAFALAASANFPVIVLGLFWKR--LNTAGAIAGMLLGLIVTLV 461 (529)
T ss_pred HHHHHHHHheecCCccHHHHHHHHHHHHHHcccchhhHHHHHhh--ccHHhHHHHHHHHHHHHHH
Confidence 999999999998764 234666677665443 99999996 5999999999999999843
No 15
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=99.94 E-value=8.9e-27 Score=234.62 Aligned_cols=228 Identities=19% Similarity=0.157 Sum_probs=156.9
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh------hhhh------hhhccc------------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGF------SQIW------EDSTST------------ 58 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~------~~~~------~~~~~~------------ 58 (336)
++++++||..||+|||+|||++|+++|+++.+++......+..||+ ++.. ++..+.
T Consensus 153 ~~i~~iYt~~GG~~aV~~TD~iQ~iim~ig~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (552)
T TIGR03648 153 MAIVFFYAVLGGMKGVTWTQVAQYIVLIVAYLVPAIFISLKLTGNPVPQLGYGSALSGVYLLDKLDELEVDLGFAEYTEP 232 (552)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHhhhhhhhhhhhcccccchhhhccc
Confidence 4567899999999999999999999999998777666555524432 2221 111110
Q ss_pred ----CcchH------------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CC-------C
Q psy15005 59 ----NRIES------------------------------LIALWVSAVGLILIYCINAYMGAILYSQYK-TC-------D 96 (336)
Q Consensus 59 ----~~~~~------------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~-------~ 96 (336)
+..++ ||+..++.....+........|...+.... +. .
T Consensus 233 ~~~~~~~~~~~~~~~~~lg~~~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~ 312 (552)
T TIGR03648 233 FGSKSRINVFALTLALMVGTAGLPHVIVRFYTVPKVRDARWSAGWALFFIALLYTTAPAVAAFARYNLITTVNGTPYAEL 312 (552)
T ss_pred cccCChHHHHHHHHHHHHhcccchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 00110 777666654444444444445544443321 10 0
Q ss_pred Cc------ccc----ccCCCccchHH-------------------HHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHH
Q psy15005 97 PL------TKH----IIHGSDQMLPL-------------------YVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSL 147 (336)
Q Consensus 97 ~~------~~~----~~~~~d~~~p~-------------------~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~ 147 (336)
|. ..+ ...++|+++|. ...+.+| +|+.|+++++++||.|||+||.+|+.
T Consensus 313 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~lp--~~l~gl~~ag~~aA~mSt~~s~l~a~ 390 (552)
T TIGR03648 313 PGWVANWEKTGLLKFEDKNGDGILQYSGDAGNELTIDRDIIVLATPEIAGLP--YWVIGLVAAGGLAAALSTAAGLLLVI 390 (552)
T ss_pred hhhhhhhhccccccccccCCCCcccccccccccccccccHHHhhHHHHcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 000 01234444332 2345788 99999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHhh-ee----eecCcCcccccc
Q psy15005 148 AAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQV---VSFIT-AI----ELLGNPSEFYNH 219 (336)
Q Consensus 148 st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~~~---~~~~~-g~----~llGl~~~~~~~ 219 (336)
|++++||+||++.||+++|||+++++|+.+++++++++.+++..+ +++.++ .+.+. +. +++|+|||| .
T Consensus 391 st~~~~Di~~~~~~~~~s~~~~l~~~R~~~v~~~~~~~~~a~~~~--~~i~~l~~~~~~~~~~~~~~~~llgl~w~r--~ 466 (552)
T TIGR03648 391 SSAISHDLYYRIINPNASEKQRLLVARIALVVAAVIAGYFGLNPP--GFIAQVVAFAFGLAAASFFPALVLGIFWKR--M 466 (552)
T ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C
Confidence 999999999999999999999999999999999999999887432 334443 33321 22 289999995 7
Q ss_pred CCcchhhheeehhhccc
Q psy15005 220 GSQFFLICISFVLVVPL 236 (336)
Q Consensus 220 ~~~g~~~~i~~gl~~s~ 236 (336)
|++|+++++..|..+.+
T Consensus 467 ~~~ga~~g~i~G~~~~~ 483 (552)
T TIGR03648 467 NREGAIAGMLTGLGFTF 483 (552)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999988874
No 16
>COG4146 Predicted symporter [General function prediction only]
Probab=99.84 E-value=7.4e-21 Score=174.99 Aligned_cols=220 Identities=19% Similarity=0.225 Sum_probs=175.6
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------Chhhhhhhhcc--------cCcchH-----
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPG------GFSQIWEDSTS--------TNRIES----- 63 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~g------G~~~~~~~~~~--------~~~~~~----- 63 (336)
|++-..|...||+||++..|+++++-+++|...+.++++.+ .| |.+++.+...| ++...|
T Consensus 171 G~~g~~Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~-lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fT 249 (571)
T COG4146 171 GLAGILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIA-LGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFT 249 (571)
T ss_pred HHHHHHHHHHcchhheeeccccchhhHhhhhHHHHHHHHHh-hcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHH
Confidence 34456899999999999999999999999999999888877 33 45554333221 011111
Q ss_pred -----------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHH
Q psy15005 64 -----------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYV 114 (336)
Q Consensus 64 -----------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~ 114 (336)
||+...++.....-+....++|++++-+|++. ++.|..+|.++
T Consensus 250 Gll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhlygdL--------~~aDmaYP~LV 321 (571)
T COG4146 250 GLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHLYGDL--------PKADMAYPTLV 321 (571)
T ss_pred hHhhhheeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHHhccC--------CccccccHHHH
Confidence 77778888888888888999999999999864 46899999999
Q ss_pred HHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-h
Q psy15005 115 LNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVE-R 193 (336)
Q Consensus 115 ~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~-~ 193 (336)
.+.+| ..+.|.+.+.++.|++||.++.+|+.+|.++.|+|++.+|||++|+|.+..+|......++.+++++-+.. .
T Consensus 322 n~VlP--v~l~GFf~AvLFGAilStFN~fLNSa~Tlf~~diy~~I~k~na~e~eLv~~grkf~a~~Ai~sv~iaP~i~~a 399 (571)
T COG4146 322 NNVLP--VPLVGFFGAVLFGAILSTFNGFLNSASTLFSMDIYRRIIKQNAEEQELVTVGRKFGAFIAIVSVLIAPWIANA 399 (571)
T ss_pred Hhccc--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999997654 3
Q ss_pred hhhHHHHHHHhheee--------ecCcCccccccCCcchhhheeehhhcc
Q psy15005 194 LGSVLQVVSFITAIE--------LLGNPSEFYNHGSQFFLICISFVLVVP 235 (336)
Q Consensus 194 ~~~i~~~~~~~~g~~--------llGl~~~~~~~~~~g~~~~i~~gl~~s 235 (336)
++.++.+...+.|.. ..|+|.|+- ....+-..+..+...-
T Consensus 400 pqGly~~~k~~nGfynvPiva~~ivGfF~k~v--palAakva~~ihvilY 447 (571)
T COG4146 400 PQGLYSWMKQLNGFYNVPIVAIIIVGFFFKRV--PALAAKVAMGIHVILY 447 (571)
T ss_pred cchHHHHHHHhcCcccchhHHHHHHHHHHhhc--chhHHHHHHHhhheeE
Confidence 456777766666664 677777753 3333333444444433
No 17
>KOG3761|consensus
Probab=99.79 E-value=2.8e-20 Score=168.99 Aligned_cols=228 Identities=18% Similarity=0.200 Sum_probs=169.1
Q ss_pred EEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----Chhhhhhhhccc-----Ccc-------------
Q psy15005 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPG----GFSQIWEDSTST-----NRI------------- 61 (336)
Q Consensus 4 ~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~g----G~~~~~~~~~~~-----~~~------------- 61 (336)
++..+||..||+.+|+|||++|.+.++++++++.+.++.| .+ |+.....+-.++ +.+
T Consensus 173 ~ia~~yt~~gg~yavaytdvvqlfcifvglwi~vp~al~h-~~~~di~~~a~hakyqk~wig~i~g~~e~~~wid~~lll 251 (591)
T KOG3761|consen 173 CIATFYTFTGGLYAVAYTDVVQLFCIFVGLWICVPAALSH-DAAADIGFNAGHAKYQKDWIGEIDGFKETSLWIDCFLLL 251 (591)
T ss_pred HHHHHHhhccceEEEeehhHHHHHHHHhhhheechhhhcC-chhhhcccccccccccCCceeccCCchhhHHHHHHHHHH
Confidence 3456899999999999999999999999999999999888 54 222222221110 000
Q ss_pred -----hH----------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHh------cCCCCccc---cccCCCccchH
Q psy15005 62 -----ES----------------LIALWVSAVGLILIYCINAYMGAILYSQY------KTCDPLTK---HIIHGSDQMLP 111 (336)
Q Consensus 62 -----~~----------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~------~~~~~~~~---~~~~~~d~~~p 111 (336)
.| |.-...+.++.+++..+..++|.++...- .-.||-.. -..+++|.++|
T Consensus 252 ~~ggipwq~yfqrvlss~sa~~aq~lsfla~~gcilmaip~~ligai~~ntdw~~t~y~~~d~~tkvesip~d~~dmilp 331 (591)
T KOG3761|consen 252 MFGGIPWQAYFQRVLSSKSAHGAQTLSFLAAFGCILMAIPAALIGAIAANTDWNMTAYGLPDNGTKVESIPPDEADMILP 331 (591)
T ss_pred HhcCCcHHHHHHHHHhccccchhHHHHHHHHhchHheeCCHHHHhhhhccCcccccccCCCCCCcccccCCccccceehh
Confidence 01 22345667777788888888987775421 11111110 01356788999
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15005 112 LYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIV 191 (336)
Q Consensus 112 ~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~ 191 (336)
...+.+-| .|+.-+-+.++-||.||++||.+++.++++.||+||--+||++|||+.+++.|+.++.+|+.+..+|+..
T Consensus 332 iv~qyl~p--~~iaf~glgavsaavmssadssilsaasmfa~ni~kls~r~~asdkeii~vmriai~~~g~~at~mal~~ 409 (591)
T KOG3761|consen 332 IVFQYLCP--RWIAFFGLGAVSAAVMSSADSSILSAASMFAHNIWKLSFRPHASDKEIIIVMRIAIFCFGAMATAMALLI 409 (591)
T ss_pred HHHHhhch--HHHhhhcchHHHHHHHhccchHhhhHHHHHhhhhheeeeccCCCCceEEEEEEehhhhhhHHHHHHHHHH
Confidence 98888888 7888777899999999999999999999999999999899999999999999999999999999999976
Q ss_pred hhhhhHHHHHHHhheee----ecC-cCccccccCCcchhhheeehhhccc
Q psy15005 192 ERLGSVLQVVSFITAIE----LLG-NPSEFYNHGSQFFLICISFVLVVPL 236 (336)
Q Consensus 192 ~~~~~i~~~~~~~~g~~----llG-l~~~~~~~~~~g~~~~i~~gl~~s~ 236 (336)
+++..++.+...+.-.. ++- +|-+ +.|+.|++++...|++..+
T Consensus 410 ksiyglwyl~adlvyiiifpqllcvl~m~--~sntygalagy~~gl~lri 457 (591)
T KOG3761|consen 410 KSIYGLWYLCADLVYIIIFPQLLCVLFMK--GSNTYGALAGYASGLFLRI 457 (591)
T ss_pred HHHHHHHHHhhceeEeEeccceeeEEEec--CCCcchhhhhhheeeEEEE
Confidence 65545544444433332 333 3445 4699999999999999885
No 18
>KOG2349|consensus
Probab=99.74 E-value=1.1e-18 Score=171.92 Aligned_cols=116 Identities=30% Similarity=0.528 Sum_probs=110.2
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccH
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSA 293 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~ 293 (336)
+++++++|++.|++++.++.+|..+.. +++|.|+|.|++|.+++++++...+..++.+++|+|+|+|.|++|.
T Consensus 38 ~~y~l~gr~m~~~Pv~~SL~aS~~s~~-------~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~~~ 110 (585)
T KOG2349|consen 38 EEYFLGGRSMVWLPVAASLFASNISSV-------HFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVTTM 110 (585)
T ss_pred hhhhhcCCcceEEEeehhhhhhhhcce-------eeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCeeeh
Confidence 466678999999999999999977665 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 294 YEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 294 ~eyl~~Rf~~~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
|||||+|||+..|.+.++.|++..+.++++.+|+||+++||++
T Consensus 111 ~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvt 153 (585)
T KOG2349|consen 111 YEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVT 153 (585)
T ss_pred hHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHh
Confidence 9999999999999999999999999999999999999999974
No 19
>COG4146 Predicted symporter [General function prediction only]
Probab=99.49 E-value=5.5e-15 Score=136.55 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=88.4
Q ss_pred ceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccHHHHHHHhhcchhhhHHHHHHHHHHHH-HH
Q psy15005 243 PVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVF-YT 321 (336)
Q Consensus 243 p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~~eyl~~Rf~~~~r~~~s~~f~~~~~~-~~ 321 (336)
+++.++.+|..+.+|+.+++...|++...+..++.+.+++|.|.|.|+||+|||||+|||+++|.+.|.+|++.+.. .+
T Consensus 55 nLSTEQlvGln~~ayk~~~svmaWeVts~i~L~flAl~~lprylK~GitTIPdFlE~RfD~~TR~Iis~lFLi~y~~~fl 134 (571)
T COG4146 55 NLSTEQLVGLNGQAYKGNMSVMAWEVTSVIPLIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLIAYGVCFL 134 (571)
T ss_pred cccHHHhccccceeccCCeEEEEEEecchHHHHHHHHHHHHHHHhcCCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999976 59
Q ss_pred HHHHhHHHHHHHhhC
Q psy15005 322 SVAVFAPALALSHAL 336 (336)
Q Consensus 322 ~~~ly~~al~l~~v~ 336 (336)
+.++|.+|+++|+++
T Consensus 135 PtvLYsGAla~nsiF 149 (571)
T COG4146 135 PTVLYSGALALNSIF 149 (571)
T ss_pred hHHHhhhhHHHhhhh
Confidence 999999999999874
No 20
>KOG2348|consensus
Probab=99.41 E-value=3.1e-13 Score=127.73 Aligned_cols=227 Identities=14% Similarity=0.152 Sum_probs=155.9
Q ss_pred EEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCChhhhhhhhcccC-------cc-------------
Q psy15005 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQ--WLTPGGFSQIWEDSTSTN-------RI------------- 61 (336)
Q Consensus 4 ~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~--~~~~gG~~~~~~~~~~~~-------~~------------- 61 (336)
+-+++||..||+||.-.||-.+.++..+.+++..+... .+..|.++.+.+.++|.. +.
T Consensus 174 lGVvvYTl~GGlKaTFLtdy~HtvIv~iillvf~f~vYtss~~iGSp~kvYDllke~~~~~Pv~Gn~qGsYlTm~s~~~~ 253 (667)
T KOG2348|consen 174 LGVVVYTLFGGLKATFLTDYTHTVIVYIILLVFLFVVYTSSKHIGSPGKVYDLLKEASKTHPVDGNYQGSYLTMTSRDAA 253 (667)
T ss_pred eeEEEEEecCcchhhhhhhhhhhhHHHHHHHHHHHHhhhcccccCCcHHHHHHHHHHHhcCCCCCcccceEEEEEccCce
Confidence 34789999999999999999999888777765554433 334788998888765421 00
Q ss_pred ---------hH----------HHH-----------HHHHhhHHH-HHHHHHHHHHHHHHHHhcC------CCCccccccC
Q psy15005 62 ---------ES----------LIA-----------LWVSAVGLI-LIYCINAYMGAILYSQYKT------CDPLTKHIIH 104 (336)
Q Consensus 62 ---------~~----------r~a-----------~~~~~~~~~-~~~~~~~~~G~~~~~~~~~------~~~~~~~~~~ 104 (336)
|| +|+ -..++.... ..+....-.|+...++-.+ +||....+ .
T Consensus 254 i~~iinliGnFgTVFvDngYw~kAIaA~PasalkgY~lGGLaWfaVP~~~attmgL~~Lalen~p~fptyPdp~ss~q-~ 332 (667)
T KOG2348|consen 254 IFGIINLIGNFGTVFVDNGYWQKAIAAKPASALKGYFLGGLAWFAVPWLMATTMGLSCLALENNPVFPTYPDPVSSKQ-V 332 (667)
T ss_pred EEEEEEeccCceeEEEcCchhHHHhccCchhhccchhhcchHHHhHHHHHHHHhhhhhheeccCCCCCCCCCccchhh-h
Confidence 11 333 233333333 2344555677776665422 12221111 1
Q ss_pred CCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHH
Q psy15005 105 GSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVIS 184 (336)
Q Consensus 105 ~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~ 184 (336)
+...++|+-....+. -.-+...+.-++.|.-|-.|+-+.+.|+.++.|+||+|+||++|.||.++.+|..++++|...
T Consensus 333 s~Glvlp~aaiAlMG--k~Ga~a~llmlFMAvTSA~SaELIAvSSvfTYDIYr~Yi~PrAsGkell~~sh~avi~Fg~~M 410 (667)
T KOG2348|consen 333 SEGLVLPYAAIALMG--KNGAAAGLLMLFMAVTSATSAELIAVSSVFTYDIYRNYIRPRASGKELLYTSHVAVIIFGVAM 410 (667)
T ss_pred ccCCCChHHHHHHhc--ccchHHHHHHHHHHHhcccchhheeehhhhehHHHHhhcCCccCcceeEEEeeeeeehhHHHH
Confidence 234477887777887 444444455578999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhhhhHHHHHHHhheee----e----cCcCccccccCCcchhhheeehhhcc
Q psy15005 185 FLLIFIVERLGSVLQVVSFITAIE----L----LGNPSEFYNHGSQFFLICISFVLVVP 235 (336)
Q Consensus 185 i~~a~~~~~~~~i~~~~~~~~g~~----l----lGl~~~~~~~~~~g~~~~i~~gl~~s 235 (336)
-.+|......+--+.+.+...|.. + +-++||+ .|+.+++.+-..|...+
T Consensus 411 ~~~av~l~y~gismg~iy~~mGili~~AV~pit~~l~~kk--mn~~~~iv~~~lG~i~~ 467 (667)
T KOG2348|consen 411 GGLAVGLNYGGISMGWIYLFMGILIGPAVFPITLTLLWKK--MNKYGAIVGPPLGSITG 467 (667)
T ss_pred HhHhhhhhhcceeHHHHHHHHHHHhcchhHhHHHHHHHHH--hhhhhEeecCcccchhh
Confidence 888876654444556666666664 2 3367875 57777777666665554
No 21
>PRK10484 putative transporter; Provisional
Probab=99.32 E-value=1.1e-12 Score=131.66 Aligned_cols=115 Identities=20% Similarity=0.342 Sum_probs=100.7
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccH
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSA 293 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~ 293 (336)
+|++.++|+..++....++.+|..+.. .++|.||++|.+|+...++.+...+..+++++++.|.++|.|..|.
T Consensus 31 ~dyflagR~l~~~~~~~sl~AT~~Sa~-------tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~ 103 (523)
T PRK10484 31 DGYFLAGRSLTGPVIAGSLLLTNLSTE-------QLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTI 103 (523)
T ss_pred hhheecCCCCchHHHHHHHHHHHhhHH-------HHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 567788999999998889888865444 4899999999999998767777777778889999999999999999
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHHH-HHHHHHhHHHHHHHhh
Q psy15005 294 YEYLEMRFDSKVRVMASALYIIQMVF-YTSVAVFAPALALSHA 335 (336)
Q Consensus 294 ~eyl~~Rf~~~~r~~~s~~f~~~~~~-~~~~~ly~~al~l~~v 335 (336)
|||+|+|||++.|.+.+.++++.++. +++..+|+++++++++
T Consensus 104 ~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i 146 (523)
T PRK10484 104 PDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSL 146 (523)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876 6899999999988763
No 22
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=99.23 E-value=4.3e-12 Score=128.24 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=102.1
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccH
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSA 293 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~ 293 (336)
.||+.++|+..++.+..++.++..+.. .++|.|+..|.+|+...++.++.....+++++++.|.++|.+.+|.
T Consensus 25 ~dy~laGr~l~~~~~~~s~~At~~Sa~-------tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~~T~ 97 (552)
T TIGR03648 25 SEFYVAGRGVPPVANGMATAADWMSAA-------SFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGKYTV 97 (552)
T ss_pred HHHeeeCCCCchHHHHHHHHHHHHhHH-------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccH
Confidence 467788999999999999988865554 4899999999999998888888888888889999999999999999
Q ss_pred HHHHHHhhcch-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy15005 294 YEYLEMRFDSK-VRVMASALYIIQMVFYTSVAVFAPALALSHA 335 (336)
Q Consensus 294 ~eyl~~Rf~~~-~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v 335 (336)
|||||+|||++ .|.+.++..++.++.+++..+++++.+++++
T Consensus 98 ~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~ 140 (552)
T TIGR03648 98 PDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRF 140 (552)
T ss_pred HHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 6888898999999999999999999999875
No 23
>PRK12488 acetate permease; Provisional
Probab=99.06 E-value=7.6e-11 Score=119.06 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=101.1
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccH
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSA 293 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~ 293 (336)
+|++.++|+..++.....+..+..+.. .++|.|++.|.+|+..+|+.++..+..+++.+++.|.++|.+..|.
T Consensus 60 ~df~laGR~l~~~~~~~si~at~~Sa~-------sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr~~g~~T~ 132 (549)
T PRK12488 60 SDFYTAGGGLTGMQNGLAIAGDMISAA-------SFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNLGKYTF 132 (549)
T ss_pred HHHeeeCCCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch
Confidence 456677888888888888888755443 4899999999999999888888888888888899999999999999
Q ss_pred HHHHHHhhc-chhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 294 YEYLEMRFD-SKVRVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 294 ~eyl~~Rf~-~~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
|||+|+||| ++.|.+.++..++..+.|+...+.+.+..++.++
T Consensus 133 ~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~ 176 (549)
T PRK12488 133 ADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF 176 (549)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 5589999999999999999999999999988753
No 24
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=99.05 E-value=8.4e-11 Score=114.48 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=89.9
Q ss_pred cccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccHHHH
Q psy15005 217 YNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEY 296 (336)
Q Consensus 217 ~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~~ey 296 (336)
+.++|+..++....++..+..+.- .++|.|++.|.+|+...|+.++..+..++..+++.|.++|.|..|.+||
T Consensus 2 ~~agr~~~~~~~~~s~~at~~s~~-------t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~ 74 (406)
T PF00474_consen 2 FVAGRSLGWWVVAFSLVATWISAW-------TFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEY 74 (406)
T ss_dssp ----S---HHHHHHHHHHHHSSHH-------HHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHH
T ss_pred eeCCCCCcHHHHHHHHHHHHHHHH-------HHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhh
Confidence 356777788777778777754443 4889999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchh--hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 297 LEMRFDSKV--RVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 297 l~~Rf~~~~--r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
+|+|||++. |.+.++..++..+.+++..+++.+..++.++
T Consensus 75 ~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~ 116 (406)
T PF00474_consen 75 LEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF 116 (406)
T ss_dssp HHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhcc
Confidence 999999998 8888888888888999999999999988653
No 25
>PRK09395 actP acetate permease; Provisional
Probab=99.05 E-value=9.9e-11 Score=118.34 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=98.2
Q ss_pred cccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccHH
Q psy15005 215 EFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAY 294 (336)
Q Consensus 215 ~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~~ 294 (336)
|++.++|+..++....++..+..+.. .++|.|++.|.+|+..+++.++..+..+++.+++.|.++|.+..|.|
T Consensus 63 df~~agr~l~~~~~~~si~At~~Sa~-------tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~ 135 (551)
T PRK09395 63 DFYTAGGGITGFQNGLAIAGDYMSAA-------SFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFA 135 (551)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHH-------HHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccHH
Confidence 55567888888777777777755443 48999999999999998888988888888888889999999999999
Q ss_pred HHHHHhhcc-hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy15005 295 EYLEMRFDS-KVRVMASALYIIQMVFYTSVAVFAPALALSHA 335 (336)
Q Consensus 295 eyl~~Rf~~-~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v 335 (336)
||+|+|||+ +.|.+.++..++..+.+++..+.+.+.+++.+
T Consensus 136 d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~ 177 (551)
T PRK09395 136 DVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL 177 (551)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999995 58999999999999999998898888888765
No 26
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.99 E-value=2.9e-10 Score=113.81 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=92.1
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhh-----eeeceeecc
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSR-----LYLPVFMKL 288 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~-----~~~P~~~~~ 288 (336)
+|++.++|+..++....++.++..+.. .++|.|+++|.+|+...|+.++..+..++... +..|.++|.
T Consensus 33 ~dy~lagr~l~~~~~~~s~~At~~Sa~-------t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 105 (502)
T PRK15419 33 DDYILGGRSLGPFVTALSAGASDMSGW-------LLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNN 105 (502)
T ss_pred hHheeeCCCccHHHHHHHHHHHHHHHH-------HHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466678999999988888888865554 48999999999999987777766665544333 345556788
Q ss_pred ccccHHHHHHHhhcch---hhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 289 RLTSAYEYLEMRFDSK---VRVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 289 ~~~s~~eyl~~Rf~~~---~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
|..|.|||+|+|||++ .|.+.++..++..+.+++..+++++.++++++
T Consensus 106 ~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~ 156 (502)
T PRK15419 106 NALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF 156 (502)
T ss_pred CceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999964 45567777888888899999999999998753
No 27
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.98 E-value=3.8e-10 Score=109.95 Aligned_cols=110 Identities=21% Similarity=0.278 Sum_probs=93.3
Q ss_pred CCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccHHHHHHH
Q psy15005 220 GSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEM 299 (336)
Q Consensus 220 ~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~~eyl~~ 299 (336)
+|+..++....++..+..+.. .++|.|+++|.+|+..+++.++.....++.++++.|.++|.+..|.+||+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~-------t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~ 74 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISAS-------QFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEK 74 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHH-------HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 344445555556666644333 4899999999999999999999999999999999999999999999999999
Q ss_pred hhcc-hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 300 RFDS-KVRVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 300 Rf~~-~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
|||+ ..|.+.++..++..+.+++..+++.+.++++++
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~ 112 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT 112 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 578999999999999999999999999998753
No 28
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.93 E-value=5.8e-10 Score=111.22 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=93.6
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceee-----cc
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFM-----KL 288 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~-----~~ 288 (336)
+|++.++|+..++....++.++..+.. .++|.|+..|.+|+...|..++..+..++..+++.|.++ |.
T Consensus 29 ~df~lagr~~~~~~~~~s~~At~~s~~-------~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~ 101 (487)
T TIGR02121 29 SDYVLGGRSLGPFVTALSAGASDMSGW-------LLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAH 101 (487)
T ss_pred HHHeeeCCcccHHHHHHHHHHHHHhHH-------HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 356677888888877777777744333 488999999999999877777777777777788889887 78
Q ss_pred ccccHHHHHHHhhcch---hhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 289 RLTSAYEYLEMRFDSK---VRVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 289 ~~~s~~eyl~~Rf~~~---~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
|..|.|||+|+|||++ .|.+.++..++....+++..+++++..+++++
T Consensus 102 ~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~ 152 (487)
T TIGR02121 102 NSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF 152 (487)
T ss_pred CCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999965 45567777777778899999999999998753
No 29
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.91 E-value=6.7e-10 Score=112.20 Aligned_cols=115 Identities=12% Similarity=0.174 Sum_probs=97.7
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccH
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSA 293 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~ 293 (336)
.|++.++|+..++....++..+..+.. .++|.||..|.+|+..+++.++..+..+++.+++.|.++|.+..|.
T Consensus 60 ~dy~laGr~~~~~~~g~si~at~~Saa-------sflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lrr~g~~T~ 132 (549)
T TIGR02711 60 SDYYTAGGNITGFQNGLAIAGDYMSAA-------SFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTF 132 (549)
T ss_pred hhheeeCCCccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 356667888877777777777754443 4899999999999999888888888888888999999999999999
Q ss_pred HHHHHHhhc-chhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy15005 294 YEYLEMRFD-SKVRVMASALYIIQMVFYTSVAVFAPALALSHA 335 (336)
Q Consensus 294 ~eyl~~Rf~-~~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v 335 (336)
+||+|+||| |..|.+.++..++..+.|+...+...+..++.+
T Consensus 133 ~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~ 175 (549)
T TIGR02711 133 ADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELL 175 (549)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 457999988888888889888999999888865
No 30
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.86 E-value=1.7e-09 Score=107.89 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=97.2
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccc----
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLR---- 289 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---- 289 (336)
+|++.++|+-.......+...+..+.- +++|.|+.+|.+|+...|......+...+...++.|+.+|.+
T Consensus 31 ~dy~~~gR~lg~~v~~ls~~as~~s~~-------t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~ 103 (493)
T COG0591 31 EDYFLGGRSLGPFVYALSAAASDTSGW-------TFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARG 103 (493)
T ss_pred HHHhccCCcCChHHHHHHHHHHHHHHH-------HHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 455556665555566666666655432 489999999999999999999988888999999999998877
Q ss_pred cccHHHHHHHhhc-chhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy15005 290 LTSAYEYLEMRFD-SKVRVMASALYIIQMVFYTSVAVFAPALALSHA 335 (336)
Q Consensus 290 ~~s~~eyl~~Rf~-~~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v 335 (336)
.+|.|||+|+||| +..|.+.+...++..+.|.+..+.+++..++..
T Consensus 104 ~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~ 150 (493)
T COG0591 104 ATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLL 150 (493)
T ss_pred CccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999 788999999999999999999999999988643
No 31
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.77 E-value=5.9e-09 Score=103.56 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=87.9
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHH-HH---HHHHhhheeeceeeccc
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISF-VL---VVPLTSRLYLPVFMKLR 289 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~-~~---~~~~~~~~~~P~~~~~~ 289 (336)
+|++.++|+..++....++.++..+.. .++|.|+++|.+|+.+.+..... +. ...+++..+.|.++|.|
T Consensus 33 ~dy~~agr~l~~~~~~~s~~at~~s~~-------t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (471)
T TIGR02119 33 NEYFLGGRSMGGFVLAMTLVATYGSAS-------SFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN 105 (471)
T ss_pred cceeEeCCcccHHHHHHHHHHHHhhHH-------HHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 366678898888888888888855443 48999999999998753332211 11 22233445566679999
Q ss_pred cccHHHHHHHhhcchh-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 290 LTSAYEYLEMRFDSKV-RVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 290 ~~s~~eyl~~Rf~~~~-r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
..|.|||+|+|||++. |.+.++..++..+.+++..+++++.++++++
T Consensus 106 ~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~ 153 (471)
T TIGR02119 106 AITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT 153 (471)
T ss_pred CccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999764 7778888888888889999999999998763
No 32
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.77 E-value=6.8e-09 Score=103.45 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=86.6
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeecee----eccc
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVF----MKLR 289 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~----~~~~ 289 (336)
+|++.++|+..++....++.++..+.. .++|.|+.+|.+|+...+..........+...++.|.+ +|.|
T Consensus 34 ~dy~~agr~~~~~~~~~s~~at~~s~~-------t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 106 (483)
T PRK09442 34 NEYFLGNRSMGGFVLAMTLIATYISAS-------SFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN 106 (483)
T ss_pred cceeeeCCCccHHHHHHHHHHHHhhHh-------HHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455567888788777788877754443 48999999999999865544433332223333455666 9999
Q ss_pred cccHHHHHHHhhcchh-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Q psy15005 290 LTSAYEYLEMRFDSKV-RVMASALYIIQMVFYTSVAVFAPALALSHAL 336 (336)
Q Consensus 290 ~~s~~eyl~~Rf~~~~-r~~~s~~f~~~~~~~~~~~ly~~al~l~~v~ 336 (336)
..|.+||+|+|||++. |.+.++..++..+.+++..+++.+..+++++
T Consensus 107 ~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~ 154 (483)
T PRK09442 107 AVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT 154 (483)
T ss_pred CccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999774 6677777777777899999999999998753
No 33
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.29 E-value=0.00043 Score=65.21 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=75.8
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHH-HHHHHHHHhhheeecee----ecc
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICI-SFVLVVPLTSRLYLPVF----MKL 288 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~-~~~~~~~~~~~~~~P~~----~~~ 288 (336)
.|+|.+||...-..+.....+|..+. +.++|-||.+|++|.++....+ ..+.+.+..+ +.-|.+ +|.
T Consensus 32 neYylgnRsmgg~VlAmt~~aTYisa-------SSFigGpgaayk~GlgwvlLa~iqvp~~~l~lg-vlgkk~~~~ar~~ 103 (473)
T COG4145 32 NEYYLGNRSMGGIVLAMTFTATYISA-------SSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALG-VLGKKFAILAREY 103 (473)
T ss_pred HHHHhccCcccceehhhHHHHHHHHH-------hhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHh
Confidence 56778888877766666666665433 3589999999999999844443 3333333333 333444 578
Q ss_pred ccccHHHHHHHhhcch-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy15005 289 RLTSAYEYLEMRFDSK-VRVMASALYIIQMVFYTSVAVFAPALALSH 334 (336)
Q Consensus 289 ~~~s~~eyl~~Rf~~~-~r~~~s~~f~~~~~~~~~~~ly~~al~l~~ 334 (336)
|.-|++|++.+||.++ ...++|+.-++..+..+.+..=.+|-.++.
T Consensus 104 nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~ 150 (473)
T COG4145 104 NALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLET 150 (473)
T ss_pred CCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999655 566666666666666676665555544443
No 34
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.91 E-value=0.0019 Score=62.85 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=66.4
Q ss_pred ccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccHHHHHHHhhcc-hhhhHHHHHHHHHHHHHHHHHHh
Q psy15005 248 LRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDS-KVRVMASALYIIQMVFYTSVAVF 326 (336)
Q Consensus 248 ~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~~eyl~~Rf~~-~~r~~~s~~f~~~~~~~~~~~ly 326 (336)
.++|.++..+.+|..-+++.++-....+++.++..|..+|.+-+|.+||+..||++ ..|.+.++..++-..+|+-..+=
T Consensus 61 SflGiag~I~~~GYdG~~Y~iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmv 140 (529)
T COG4147 61 SFLGIAGLIFISGYDGLIYSIGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMV 140 (529)
T ss_pred hhhchhHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999965 46888766666555555444333
No 35
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=91.53 E-value=2.4 Score=41.62 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=61.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHH
Q psy15005 68 WVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSL 147 (336)
Q Consensus 68 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~ 147 (336)
..+.....+++.....+|......++ +.+|..+++-...+++++ +.-.-++-..++-|++.|+-++..++
T Consensus 229 ~ia~~lL~~IY~gL~~lGa~~~~~~~--------~~~~g~~lL~~i~~~~~G--~~G~~ll~iiv~lACLTTaIGL~~a~ 298 (427)
T PF05525_consen 229 LIAGILLALIYGGLAYLGATSSGSFP--------DDINGAELLSQIANHLFG--SAGQILLGIIVFLACLTTAIGLISAC 298 (427)
T ss_pred HHHHHHHHHHHHHHHHHccCCccccc--------CCCCHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555533222221 124567788888888898 66667777788999999999999888
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy15005 148 AAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIF 189 (336)
Q Consensus 148 st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~ 189 (336)
|..+.+. . | +.|.|. .+++..+++..+|-
T Consensus 299 a~yf~~~-~----~-kisY~~-------~v~i~~i~S~~ian 327 (427)
T PF05525_consen 299 AEYFSEL-F----P-KISYKV-------WVIIFTIFSFIIAN 327 (427)
T ss_pred HHHHHHH-h----c-ccChHH-------HHHHHHHHHHHHHH
Confidence 8776653 2 2 344443 34444555555553
No 36
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=87.33 E-value=7.8 Score=38.23 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=65.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHH
Q psy15005 68 WVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSL 147 (336)
Q Consensus 68 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~ 147 (336)
..++.....++....++|.-....++ +.+|..++.-..+.+.++ ++...++...+.-|++.|+-++..++
T Consensus 233 ~ia~~~L~~vY~gL~~lGa~s~~~~~--------~~~~g~~il~~~~~~~~G--~~G~~ll~iiv~lACLTTaIGLi~a~ 302 (439)
T PRK15433 233 LMAGVGLTLLYLALFRLGSDSASLVD--------QSANGAAILHAYVQHTFG--GGGSFLLAALIFIACLVTAVGLTCAC 302 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccc--------CCCcHhHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556555666632211111 112445555667788888 89999999999999999999999998
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy15005 148 AAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVS 202 (336)
Q Consensus 148 st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~~~~~ 202 (336)
+.-+.+.. + .+. |....+..+++..+|.. ..++++.+..
T Consensus 303 a~~f~~~~-----~--isY-------~~~v~i~~l~S~~lSn~--G~~~II~~s~ 341 (439)
T PRK15433 303 AEFFAQYV-----P--LSY-------RTLVFILGGFSMVVSNL--GLSQLIQISV 341 (439)
T ss_pred HHHHHhhc-----C--CcH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 87766542 1 122 34455566666666643 2334444443
No 37
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=86.23 E-value=32 Score=33.66 Aligned_cols=100 Identities=24% Similarity=0.275 Sum_probs=62.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHH
Q psy15005 67 LWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINS 146 (336)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a 146 (336)
-+.++.....++.....+|.......+ +.+|..+++-...++.+. +.-.-++-..+.-|++.|+-++..+
T Consensus 230 glIa~i~La~iY~~L~ylGa~s~~~~~--------~~~nG~~IL~~~s~~~fG--~~G~~lL~~iv~lACLTTaiGLi~a 299 (431)
T COG1114 230 GLIAAILLALIYLSLFYLGATSASAAG--------LAANGGQILSAYSQHLFG--SYGSILLGLIVFLACLTTAVGLIVA 299 (431)
T ss_pred HHHHHHHHHHHHHHHHHhccchHhhcc--------cccchHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666633332222 224567788889999988 6555666677788999999999988
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy15005 147 LAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIF 189 (336)
Q Consensus 147 ~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~ 189 (336)
+|.-+. +..+ +.|-|+. +.++.+.+.++|-
T Consensus 300 ~aefF~-----~~~p-~~SY~~~-------v~if~i~sflvan 329 (431)
T COG1114 300 CAEFFS-----KLVP-KLSYKTW-------VIIFTLISFLVAN 329 (431)
T ss_pred HHHHHH-----Hhcc-cccHHHH-------HHHHHHHHHHHHH
Confidence 876554 3433 5555543 4444555555553
No 38
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=84.87 E-value=39 Score=32.72 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy15005 104 HGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQ 153 (336)
Q Consensus 104 ~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~ 153 (336)
+|.++++....++.+. +.-.-++-..++-|++.|+.++..+++..+.+
T Consensus 251 ~~~~~~l~~~a~~~~G--~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~ 298 (378)
T TIGR00796 251 VNGAQILSAYSQHLFG--SLGSFLLGLIITLACLTTAVGLTTACSEYFHK 298 (378)
T ss_pred CCcHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888889998 77777888889999999999999996655544
No 39
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=80.36 E-value=41 Score=32.48 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=27.3
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy15005 110 LPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVT 151 (336)
Q Consensus 110 ~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~ 151 (336)
...+.++..+ ++..-++..+..-+.+++..+.+++.+=..
T Consensus 260 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 299 (426)
T PF13520_consen 260 FAVLASAVGG--SWLAIIVSIAAILSLFGSINAFIFGASRLL 299 (426)
T ss_dssp HHHHHHHHHC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccc--cccccccccccccccccccchhhcchhhcc
Confidence 4556566666 677777777777777777777777766543
No 40
>PRK10746 putative transport protein YifK; Provisional
Probab=79.38 E-value=52 Score=32.61 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=25.1
Q ss_pred cchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHH
Q psy15005 108 QMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAA 149 (336)
Q Consensus 108 ~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st 149 (336)
..+.....+.-. ++...++...++.+..|+.++.+.+.|=
T Consensus 269 sp~v~~~~~~g~--~~~~~i~~~~il~a~~s~~n~~~~~~sR 308 (461)
T PRK10746 269 SPFVLTFAKIGI--TAAAGIINFVVLTAALSGCNSGMYSCGR 308 (461)
T ss_pred CcHHHHHHHhCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333 5666677777778888888888776543
No 41
>PRK11017 codB cytosine permease; Provisional
Probab=78.19 E-value=70 Score=31.14 Aligned_cols=42 Identities=10% Similarity=-0.054 Sum_probs=24.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhh
Q psy15005 12 HGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWED 54 (336)
Q Consensus 12 ~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~ 54 (336)
.-|.|+.-+-+.+-..++.+..+.+......+ .||+++.++.
T Consensus 136 ~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~-~~g~~~~~~~ 177 (404)
T PRK11017 136 YFGISALTILSRIAVPAIALLGGYSVWLAVND-VGGLDGLKAI 177 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCchhhhhcC
Confidence 45677766655555555555444445556666 6777776543
No 42
>PRK11021 putative transporter; Provisional
Probab=75.84 E-value=47 Score=32.17 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=20.5
Q ss_pred ccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHH
Q psy15005 107 DQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLA 148 (336)
Q Consensus 107 d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~s 148 (336)
+...+....+.++ ++...++....+.+.+++..+.+++.+
T Consensus 245 ~~~~~~~~~~~~G--~~~~~ii~i~~~~s~~~~~~~~~~~~s 284 (410)
T PRK11021 245 AASLPGIFVQLFG--GYALWVICVIGYLACFASVNIYTQSFA 284 (410)
T ss_pred cccHHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666 444434444444455555555554443
No 43
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=70.61 E-value=1.1e+02 Score=29.84 Aligned_cols=36 Identities=17% Similarity=-0.024 Sum_probs=26.3
Q ss_pred eeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15005 8 FYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWL 43 (336)
Q Consensus 8 ~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~ 43 (336)
.|...+|.|.+.+..-+=...+++....+......+
T Consensus 134 ~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~ 169 (397)
T TIGR00814 134 VAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPH 169 (397)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999988887766666666555555433
No 44
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=69.57 E-value=67 Score=31.45 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=24.2
Q ss_pred CccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHH
Q psy15005 106 SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLA 148 (336)
Q Consensus 106 ~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~s 148 (336)
.|..+....++..+ ++..-++..+++-+.+++.++.+...+
T Consensus 254 ~~~p~~~~~~~~~g--~~~~~~i~~~~~i~~l~~~~~~~~~~~ 294 (435)
T PRK10435 254 SGAPFAISASTILG--NWAAPLVSAFTAFACLTSLGSWMMLVG 294 (435)
T ss_pred CCCcHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666 676666655566677777766555444
No 45
>PRK10238 aromatic amino acid transporter; Provisional
Probab=68.75 E-value=1.2e+02 Score=29.78 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=24.4
Q ss_pred cchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 108 QMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 108 ~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
..+.....+... ++...++...++.+.+|+.++.+.+.+=.
T Consensus 269 sP~~~~~~~~g~--~~~~~i~~~~i~~~~~s~~~~~~~~~sR~ 309 (456)
T PRK10238 269 SPFVLIFHELGD--TFVANALNIVVLTAALSVYNSCVYCNSRM 309 (456)
T ss_pred CcHHHHHHHcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333 56666666677777788887776666543
No 46
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=66.78 E-value=1.4e+02 Score=29.57 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=19.3
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
++..-++...++.+.+++.++.+.+.+=.
T Consensus 292 ~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 320 (469)
T PRK11049 292 PAAASVINFVVLTSAASSANSGVFSTSRM 320 (469)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667777777777777655544
No 47
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=65.42 E-value=20 Score=33.52 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhheeeceeeccccccHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHhH
Q psy15005 267 CISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFA 327 (336)
Q Consensus 267 ~~~~~~~~~~~~~~~~P~~~~~~~~s~~eyl~~Rf~~~~r~~~s~~f~~~~~~~~~~~ly~ 327 (336)
.+.+.+......++..-...|.+-.|..||.|+++||...+.....|.+..+...+..+-.
T Consensus 38 ~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~ 98 (320)
T PF03845_consen 38 VLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLRE 98 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555566777889999999999999998888888888777665555443
No 48
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=62.44 E-value=90 Score=30.91 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=25.7
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 110 LPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 110 ~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
......+..+ ++...++..+++.+.+++..+.+++.+=.
T Consensus 270 ~~~~~~~~~g--~~~~~~i~i~~~is~~~~~~~~~~~~sR~ 308 (473)
T TIGR00905 270 MAAVLEMIVG--KWGAVLISLGLIISVLGSLLSWTMLAAEV 308 (473)
T ss_pred HHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666 66666677767777777777777766543
No 49
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=61.69 E-value=15 Score=34.80 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHhhheeeceeeccccccHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHH
Q psy15005 274 VPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVA 324 (336)
Q Consensus 274 ~~~~~~~~~P~~~~~~~~s~~eyl~~Rf~~~~r~~~s~~f~~~~~~~~~~~ 324 (336)
....++++.-...|..-.+.+||.|+.|||..-...+..|++......+..
T Consensus 47 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~ 97 (359)
T TIGR00912 47 IIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYL 97 (359)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555556899999999999988888888776655544333
No 50
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=60.79 E-value=1.3e+02 Score=29.56 Aligned_cols=39 Identities=13% Similarity=-0.039 Sum_probs=20.1
Q ss_pred ccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHH
Q psy15005 107 DQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSL 147 (336)
Q Consensus 107 d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~ 147 (336)
|..+.....+.++ ++...++..+...+..++.++.+.+.
T Consensus 259 ~~p~~~~~~~~~g--~~~~~~v~~~~~~s~~~~~~~~~~~~ 297 (445)
T PRK10644 259 ASPFGDAARMALG--DTAGAIVSFCAAAGCLGSLGGWTLLA 297 (445)
T ss_pred CChHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666 55555555455555555555444433
No 51
>TIGR00909 2A0306 amino acid transporter.
Probab=58.95 E-value=1.7e+02 Score=28.32 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=25.9
Q ss_pred CCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 105 GSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 105 ~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
+.|..+.....+..+ ++..-++..+++-+..++..+.+++.+=.
T Consensus 261 ~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 304 (429)
T TIGR00909 261 GSTAPLSLVGYDLGQ--GIGGLILTAGAVFSIASVMLAGIYGTSRV 304 (429)
T ss_pred CCCcHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555445 66666666666666667766666666544
No 52
>KOG1304|consensus
Probab=53.27 E-value=2.4e+02 Score=28.02 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCccccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy15005 74 LILIYCINAYMGAILYSQYKTC-DPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTM 152 (336)
Q Consensus 74 ~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~ 152 (336)
+.++..+..+.|...|..|++. ...-+ ..=|++.+-..++ ..+..+++-|-.=++...-.++-
T Consensus 284 M~~V~~ly~~~Gf~GYl~fG~~v~~sIT--LNLP~~~l~~~Vk--------------l~~ai~I~ls~pLQ~yv~~eIi~ 347 (449)
T KOG1304|consen 284 MGIVTLLYIFLGFFGYLAFGDDVKGSIT--LNLPQEILSQTVK--------------LLLAIAIFLTYPLQFYVPIEIIE 347 (449)
T ss_pred HHHHHHHHHHHHHHHHhhccccccceEE--ecCCccHHHHHHH--------------HHHHHHHHHcCchhhhhhHHHHH
Confidence 3445566778888889888742 11000 1113433333332 23334455555556666666655
Q ss_pred HHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15005 153 QDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVV 201 (336)
Q Consensus 153 ~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~~~~ 201 (336)
+++-+|+ +++++....-..=..+-+++.++|...++.+....+.
T Consensus 348 ~~i~~k~-----~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLV 391 (449)
T KOG1304|consen 348 PGIRKKF-----SENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLV 391 (449)
T ss_pred HhHHHhc-----CcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHH
Confidence 5544433 3333222222233333355566677667765544433
No 53
>PRK10249 phenylalanine transporter; Provisional
Probab=52.72 E-value=2.4e+02 Score=27.79 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=22.1
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHH
Q psy15005 110 LPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAA 149 (336)
Q Consensus 110 ~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st 149 (336)
+.....+... ++...++...++.+..++.++.+.+.+=
T Consensus 280 ~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~sR 317 (458)
T PRK10249 280 FVMIFHNLDS--NVVASALNFVILVASLSVYNSGVYSNSR 317 (458)
T ss_pred HHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 5666666666667777777776655443
No 54
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=51.03 E-value=2.6e+02 Score=27.62 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=25.8
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 112 LYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 112 ~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
....+..+ ++...++..+++.+.+++..+.+.+.+=.
T Consensus 268 ~~~~~~~g--~~~~~~i~~~~~is~~~~~~~~~~~~sR~ 304 (468)
T TIGR03810 268 YVLEHMVG--TWGAVLINIGLIISILGAWLSWTLLPAEI 304 (468)
T ss_pred HHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666 77777777777878888887777776544
No 55
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=50.70 E-value=1.9e+02 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=12.9
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLA 148 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~s 148 (336)
++..-++....+.+.+++..+.+++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 304 (445)
T PRK11357 278 STAGIFVAITAMIVILGSLSSCVMYQP 304 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333334444445566666555543
No 56
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=50.56 E-value=2.3e+02 Score=26.93 Aligned_cols=75 Identities=13% Similarity=-0.007 Sum_probs=42.4
Q ss_pred chHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy15005 109 MLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLI 188 (336)
Q Consensus 109 ~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a 188 (336)
.+....++..++ ++..-++.....-|..++.-+...+.... .+|.+++. . +++. |. ...++..+..+++|
T Consensus 254 ~l~~~~~~~~~~-~~~~~~v~~~~~~al~tS~~g~~l~~~d~-l~~~~~~~----~-~~~~-~~--~~~~~~~~~pl~~a 323 (381)
T TIGR00837 254 GLVNALQGVLKS-SAIELALELFSNFALASSFLGVTLGLFDY-LADLFKFD----D-SKKG-RF--KTGLLTFLPPLVFA 323 (381)
T ss_pred HHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCC----c-ccCC-Cc--hhhhhhHHhHHHHH
Confidence 344445555552 55666667777778888888877777755 56666542 1 1111 11 22445556666677
Q ss_pred HHHhh
Q psy15005 189 FIVER 193 (336)
Q Consensus 189 ~~~~~ 193 (336)
...++
T Consensus 324 ~~~p~ 328 (381)
T TIGR00837 324 LFYPE 328 (381)
T ss_pred HHhhH
Confidence 55443
No 57
>PRK10655 potE putrescine transporter; Provisional
Probab=49.76 E-value=2e+02 Score=27.98 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=21.5
Q ss_pred ccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHH
Q psy15005 107 DQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLA 148 (336)
Q Consensus 107 d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~s 148 (336)
|..+.....+.++ ++..-++..+++-+..++..+...+.+
T Consensus 257 ~~p~~~~~~~~~g--~~~~~~~~~~~~is~~~~~~~~~~~~s 296 (438)
T PRK10655 257 TAPFGLAFAQMFN--PTVGKIVMALMVMSCCGSLLGWQFTIA 296 (438)
T ss_pred cchHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556677 666555555555555566555554443
No 58
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=49.64 E-value=2.1e+02 Score=29.10 Aligned_cols=85 Identities=12% Similarity=0.206 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-hcCC--CCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy15005 121 YTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTN-VLAV--QIPENK-GAVISKYLSILYGVISFLLIFIVERLGS 196 (336)
Q Consensus 121 ~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~-~~~~--~~s~~~-~~~~~R~~~vv~~i~~i~~a~~~~~~~~ 196 (336)
.+....++=+.++-+++|.++|.+-+.|=++-. +-++ .-+| +..||+ .=..+-..+..++.++.+-+-. +-..
T Consensus 322 i~~~~~imNaVIL~svlSa~NS~lYasSR~L~s-LA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~--~~~~ 398 (541)
T COG0833 322 IPVAASIMNAVILTSVLSAANSGLYASSRMLYS-LAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSF--KETT 398 (541)
T ss_pred CccchHHHHHHHHHHHHHHhhccchHHHHHHHH-HHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhcc--Ccch
Confidence 478889999999999999999999988755332 2221 1111 112222 2334445556666665544422 2224
Q ss_pred HHHHHHHhheee
Q psy15005 197 VLQVVSFITAIE 208 (336)
Q Consensus 197 i~~~~~~~~g~~ 208 (336)
++.+...+.|+.
T Consensus 399 vf~wL~~isg~s 410 (541)
T COG0833 399 VFNWLLNISGLS 410 (541)
T ss_pred HHHHHHHHHHHH
Confidence 788777766664
No 59
>PRK11375 allantoin permease; Provisional
Probab=48.89 E-value=2.9e+02 Score=27.64 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhh
Q psy15005 13 GGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWE 53 (336)
Q Consensus 13 GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~ 53 (336)
-|+|..-+-..+-..++.+....+....+.+ . |++.+.+
T Consensus 175 ~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~-~-g~~~~~~ 213 (484)
T PRK11375 175 GGGKVLNKFTAILNPCIYIVFGGMAIWAISL-V-GIGPIFD 213 (484)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCchhhc
Confidence 4555555555555555555555566666666 4 5666553
No 60
>PRK00701 manganese transport protein MntH; Reviewed
Probab=47.58 E-value=2.9e+02 Score=27.29 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=33.0
Q ss_pred HHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH
Q psy15005 113 YVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSIL 179 (336)
Q Consensus 113 ~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv 179 (336)
.....++ ++-.-++..|+++|.+|+.-....+... ..+++. +.+.+++++....|...++
T Consensus 299 ~L~p~~G--~~a~~lFaiGL~aag~sS~i~~~~a~~~-v~~~~l----~~~~~~~~~~~~~~~~~ii 358 (439)
T PRK00701 299 LLSPLLG--AAAATLFGIALLASGLSSTVVGTLAGQI-VMEGFL----RLRIPLWVRRLITRGLAMV 358 (439)
T ss_pred HHHHHHh--HHHHHHHHHHHHHhHhHHHhHHHHHHHH-HHHHHc----CCCCChHHHHHHHHHHHHH
Confidence 3455666 7777888889999988876553333322 344443 2233333333455544433
No 61
>PRK11387 S-methylmethionine transporter; Provisional
Probab=46.92 E-value=3e+02 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=24.4
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHH
Q psy15005 110 LPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAA 149 (336)
Q Consensus 110 ~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st 149 (336)
+....++... ++..-++..+++.+..++.++.+++.+=
T Consensus 277 ~~~~~~~~g~--~~~~~ii~~~~~~s~~~~~~~~~~~~sR 314 (471)
T PRK11387 277 FVLVFEKVGI--PYAADIFNFVILTAILSAANSGLYASGR 314 (471)
T ss_pred HHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444444 6777677777777778888877766543
No 62
>PRK15049 L-asparagine permease; Provisional
Probab=44.87 E-value=3.3e+02 Score=27.20 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=25.9
Q ss_pred ccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHH
Q psy15005 107 DQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAA 149 (336)
Q Consensus 107 d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st 149 (336)
+..+....++.-. ++...++...++-+.+|+.++.+.+.+=
T Consensus 288 ~sP~~~~~~~~g~--~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 288 QSPFVTFFSKLGV--PYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred CCHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344343333 6677777778888888888888766543
No 63
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=44.87 E-value=1.9e+02 Score=29.47 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=37.3
Q ss_pred CccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHh-hhcCCCCCchhHHHHHHHHHHHHH
Q psy15005 106 SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV---TMQDFLT-NVLAVQIPENKGAVISKYLSILYG 181 (336)
Q Consensus 106 ~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~---~~~Di~~-~~~~~~~s~~~~~~~~R~~~vv~~ 181 (336)
+|..++....+ .+. ++...++.++.+.+..++..+.+.+.+=. .++|=.- +.+. +.++|+ +.-+..+++.+
T Consensus 297 ~~~p~~~a~~~-~g~-~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fa-kv~~r~--~tP~~Ail~~~ 371 (557)
T TIGR00906 297 PDAPFPVAFEY-VGW-GPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLA-QINSKT--KTPINATVVSG 371 (557)
T ss_pred cCcHHHHHHHH-cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHh-ccCCCC--CCcHHHHHHHH
Confidence 34444443333 331 55666666666666666666665554432 2344221 1111 112221 23334556666
Q ss_pred HHHHHHHHH
Q psy15005 182 VISFLLIFI 190 (336)
Q Consensus 182 i~~i~~a~~ 190 (336)
+++.++++.
T Consensus 372 iv~~il~~~ 380 (557)
T TIGR00906 372 AIAALMAFL 380 (557)
T ss_pred HHHHHHHHH
Confidence 666666654
No 64
>KOG2348|consensus
Probab=40.96 E-value=13 Score=36.80 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=74.1
Q ss_pred CCcchhhheeehhhcccccccccceeehccccccccccccChhH-HHHHHHHHHHHHHhhheeeceeec-cccccHHHHH
Q psy15005 220 GSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQF-FLICISFVLVVPLTSRLYLPVFMK-LRLTSAYEYL 297 (336)
Q Consensus 220 ~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~-~~~~~~~~~~~~~~~~~~~P~~~~-~~~~s~~eyl 297 (336)
-|.|.+++..++-|.... +++..++..|++|.+- +|+.-+..+=+++...+-+..=+| -|.-|.-|-.
T Consensus 53 VkTGLiasaVVSsWtW~s----------TlLtSa~~ayqyGV~G~~wYasga~vQIl~FtVlAie~Kr~APnAHT~~EiV 122 (667)
T KOG2348|consen 53 VKTGLIASAVVSSWTWAS----------TLLTSAGKAYQYGVSGSFWYASGATVQILLFTVLAIEVKRKAPNAHTILEIV 122 (667)
T ss_pred cccceehhhhhhhhhhhH----------HHHhhccchhhhcccchhhhhccchhhhHHHHHHHHhhhhcCCCcchhhhhh
Confidence 355555555555444322 3455677789888775 666666666555555555554333 3667888999
Q ss_pred HHhhcchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy15005 298 EMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHA 335 (336)
Q Consensus 298 ~~Rf~~~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v 335 (336)
+.|||+..+.+.-+..+.++++.++.-+..++-++|++
T Consensus 123 kaR~G~~~H~vfL~yal~TNIlVtaMLL~gGSavisal 160 (667)
T KOG2348|consen 123 KARFGQASHGVFLFYALATNILVTAMLLLGGSAVISAL 160 (667)
T ss_pred HhhcCcccceEEEhhhhhhhHHHHHHHHhCchhhhhhh
Confidence 99999999999888888889998888888888777654
No 65
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=40.48 E-value=1.8e+02 Score=28.26 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHH
Q psy15005 113 YVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYL 176 (336)
Q Consensus 113 ~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~ 176 (336)
.....++ ++-.-++..|+++|..|+.-+.-. .+....+|+.+ .+.+++.+....|..
T Consensus 285 ~L~p~~G--~~a~~lF~igLlaAG~sS~it~~~-ag~~v~~gfl~----~~~~~~~r~~~~~~~ 341 (390)
T TIGR01197 285 LLGCLFS--PAAGYIFAVGLLAAGQSSGMVGTY-SGQFVMEGFLN----WRWSPWLRRLITRAI 341 (390)
T ss_pred HHHHHhh--HHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHcC----CCCcHHHHHHHHHHH
Confidence 3445566 677788889999999988766666 34455566643 344444444444554
No 66
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=40.22 E-value=3.5e+02 Score=26.08 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=24.2
Q ss_pred ecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15005 10 ASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWL 43 (336)
Q Consensus 10 t~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~ 43 (336)
+..-|+|..-+-+.+-..++.+..+........+
T Consensus 126 ~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~ 159 (386)
T TIGR02358 126 WLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSK 159 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456888888888887777777776666655555
No 67
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=40.16 E-value=1.9e+02 Score=28.19 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=20.2
Q ss_pred CccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHH
Q psy15005 106 SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLA 148 (336)
Q Consensus 106 ~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~s 148 (336)
.|..++...++.+++.+++.-++....+.+.+++..+.+.+.+
T Consensus 258 ~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~s 300 (442)
T TIGR00908 258 SNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYS 300 (442)
T ss_pred CcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555521233334444444445555555555443
No 68
>PRK10580 proY putative proline-specific permease; Provisional
Probab=39.36 E-value=3.8e+02 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
++...++...++.+.+|+.++.+.+.+=.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 308 (457)
T PRK10580 280 TFAASILNFVVLTASLSAINSDVFGVGRM 308 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666777788887776666544
No 69
>KOG1287|consensus
Probab=36.48 E-value=2.2e+02 Score=28.56 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhc----CC---CCCchhHHHHHHHH
Q psy15005 104 HGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVL----AV---QIPENKGAVISKYL 176 (336)
Q Consensus 104 ~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~----~~---~~s~~~~~~~~R~~ 176 (336)
.+.|.+--++.+..+| .+. .+--+++++|+..+.. +.-.+-+|-++.--. +. ..+.++ ..-|..
T Consensus 269 l~S~aVav~Fa~~~~G--~~~----~~ip~~ValS~~G~~n-~~ifs~SR~~~~~areG~LP~~~s~i~~~~--~TP~~a 339 (479)
T KOG1287|consen 269 LSSDAVAVTFADRILG--VFA----WAIPFSVALSLIGSLN-SVIFSSSRLFYAGAREGHLPAFFSMISVRR--FTPRPA 339 (479)
T ss_pred cccchHHHHHHHHhcc--chH----HHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHccCccHHHHhhcCCC--CCChHH
Confidence 4566666677777776 322 2233445555554433 222222333432111 10 111111 144456
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHH----HhheeeecCcCcccc
Q psy15005 177 SILYGVISFLLIFIVERLGSVLQVVS----FITAIELLGNPSEFY 217 (336)
Q Consensus 177 ~vv~~i~~i~~a~~~~~~~~i~~~~~----~~~g~~llGl~~~~~ 217 (336)
.+.-+..++++.+. ++.+++..+.. ...+....|+.|-|+
T Consensus 340 llf~~~~~i~~~~~-~d~~~LIny~sf~~~l~~~l~~~gll~lR~ 383 (479)
T KOG1287|consen 340 LLFSGLLSIVLSLI-GDFDQLINYVSFAYWLFRGLSMAGLLWLRW 383 (479)
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666654 23444444322 122333677776554
No 70
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=36.21 E-value=2.4e+02 Score=28.38 Aligned_cols=28 Identities=21% Similarity=-0.002 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 123 GIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 123 ~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
+...++...++-+.+++.++.+.+.+=.
T Consensus 281 ~~~~ii~~~~~~~~l~~~~~~i~~~sR~ 308 (507)
T TIGR00910 281 WLVKVIAALIAFGVLAEIASWIVGPSRG 308 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666665555444
No 71
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=35.01 E-value=3.4e+02 Score=24.51 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHH
Q psy15005 123 GIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISK 174 (336)
Q Consensus 123 ~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R 174 (336)
-+.++++++++-+.+.-+.-.-.+.+|... +++++ ||+.+.||..+-+|
T Consensus 123 ~~~~l~~a~ilig~LGAvmDvaisIaSsl~-El~~~--~p~is~~eL~~SG~ 171 (244)
T PF07907_consen 123 DFRGLFFAGILIGSLGAVMDVAISIASSLF-ELKRH--NPDISRKELFKSGM 171 (244)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh--CCCCCHHHHHHHHH
Confidence 456777777766666554444445555543 46655 57888888665543
No 72
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=34.96 E-value=4.4e+02 Score=25.77 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=11.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q psy15005 11 SHGGMKAVILTDSFQAFVLLSSL 33 (336)
Q Consensus 11 ~~GG~~av~~TD~iQ~ii~~~~~ 33 (336)
..+|.|..-..+..-.....+..
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~ 177 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAF 177 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHH
Confidence 45666665555544444433333
No 73
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=34.83 E-value=4e+02 Score=25.21 Aligned_cols=42 Identities=31% Similarity=0.372 Sum_probs=29.6
Q ss_pred HHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q psy15005 114 VLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLT 157 (336)
Q Consensus 114 ~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~ 157 (336)
....+++ ++-.-++..|+++|..||.-....+.+..+ .|..+
T Consensus 245 L~~~~G~-~~a~~lF~igl~~a~fss~i~~~~~~~~~~-~~~~~ 286 (358)
T PF01566_consen 245 LEPLLGS-PWARYLFAIGLFAAGFSSSITATLAGAYVL-ADFLG 286 (358)
T ss_pred HHHhcCc-hHHHHhHHHHHHHHHHhhHHHhccccceeh-Hhhhc
Confidence 3445551 377888999999999999887766665444 46664
No 74
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=32.60 E-value=4.9e+02 Score=25.56 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
++..-++..+++-+.+++.++.+.+.+=.
T Consensus 287 ~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 287 KVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred chHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56666666677777777777777665533
No 75
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=31.29 E-value=5e+02 Score=25.77 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=7.7
Q ss_pred HHHHHHHhhHHHHHH
Q psy15005 64 LIALWVSAVGLILIY 78 (336)
Q Consensus 64 r~a~~~~~~~~~~~~ 78 (336)
.|++..+......++
T Consensus 245 p~ai~~~~~~~~~~y 259 (496)
T PRK15238 245 PKGIIIAAIVISIGY 259 (496)
T ss_pred cHHHHHHHHHHHHHH
Confidence 566666555444333
No 76
>PRK10836 lysine transporter; Provisional
Probab=29.67 E-value=5.6e+02 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
++...++...++.+.+|+.++.+.+.+=.
T Consensus 294 ~~~~~ii~~~il~a~~~~~n~~~~~~sR~ 322 (489)
T PRK10836 294 LSAAAVMNAVILTAVLSAGNSGMYASTRM 322 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888888877776544
No 77
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=28.36 E-value=5.8e+02 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=13.9
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLA 148 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~s 148 (336)
++...++...+..+.+++.++.+.+.+
T Consensus 278 ~~~~~i~~~~~~~~~l~~~~~~~~~~s 304 (474)
T TIGR03813 278 SWLGPILAFALAIGVLAGVVTWVAGPS 304 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444444455566655555443
No 78
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=26.75 E-value=6.8e+02 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=33.9
Q ss_pred ecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhh
Q psy15005 10 ASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWE 53 (336)
Q Consensus 10 t~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~ 53 (336)
...-|++.+=+-....+.+..+....+.++...+ .||.+...+
T Consensus 185 ~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~-a~g~~~~~~ 227 (497)
T COG1953 185 VLFKGMESIRKFETWAGPLVYIAMLGLAIWALVK-AGGSSILGE 227 (497)
T ss_pred HHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHh-cCCcCcccc
Confidence 4567888888888888888888888889999999 888444433
No 79
>KOG4812|consensus
Probab=26.41 E-value=2.2e+02 Score=25.76 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhheeeecCcCccccccCCcchhhheeehhhc
Q psy15005 163 QIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVV 234 (336)
Q Consensus 163 ~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~~~~~~~~g~~llGl~~~~~~~~~~g~~~~i~~gl~~ 234 (336)
+-++-..++++--..++ .+.++|+.++-++-++.++.+-. .++|+|+..++++++.=
T Consensus 148 d~~~~D~L~vGnd~~F~---~af~vAflFnwIGFlltycl~tT------------~agRYGA~~GfGLsLik 204 (262)
T KOG4812|consen 148 DEIDIDGLRVGNDGIFM---WAFIVAFLFNWIGFLLTYCLTTT------------HAGRYGAISGFGLSLIK 204 (262)
T ss_pred chhcccccccccchHHH---HHHHHHHHHHHHHHHHHHHHHhh------------Hhhhhhhhhccchhhhe
Confidence 34556677777666554 44556776655454444443221 14788888877766654
No 80
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=26.21 E-value=4.9e+02 Score=23.56 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcC----CC---CCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15005 139 TVASAINSLAAVTMQDFLTNVLA----VQ---IPENKGAVISKYLSILYGVISFLLIFIV 191 (336)
Q Consensus 139 T~~s~l~a~st~~~~Di~~~~~~----~~---~s~~~~~~~~R~~~vv~~i~~i~~a~~~ 191 (336)
.....+...++...||++.+-.. |+ .+.+-..+-.+...++..++++.++...
T Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l 102 (279)
T PRK12884 43 FLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI 102 (279)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778889999864331 11 2233335556666666677777666653
No 81
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=25.07 E-value=2.2e+02 Score=28.29 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLAAVTMQ---DFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVL 198 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~---Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~ 198 (336)
|+..+++=.-++-|.+|+.+|.+-+.+-+.-. |=..|..-.+.|+++.=.-+-..+.+...+++++.+..+ ++++
T Consensus 284 ~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF 361 (462)
T COG1113 284 PFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVF 361 (462)
T ss_pred cccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHH
Confidence 67888888888899999999999888766432 111111111234444444444555556666666666543 5777
Q ss_pred HHHHHhhee
Q psy15005 199 QVVSFITAI 207 (336)
Q Consensus 199 ~~~~~~~g~ 207 (336)
++..+..+.
T Consensus 362 ~~v~s~s~~ 370 (462)
T COG1113 362 ELVTSSSGL 370 (462)
T ss_pred HHHHHHHHH
Confidence 776655544
No 82
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.32 E-value=1e+02 Score=30.53 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHhh
Q psy15005 112 LYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV---TMQDFLTN 158 (336)
Q Consensus 112 ~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~---~~~Di~~~ 158 (336)
...++... ++..-++..+.+.+..|+..+.+++.|=. .++|=.-|
T Consensus 278 ~~~~~~~~--~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP 325 (478)
T PF00324_consen 278 IAAQYSGG--PWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLP 325 (478)
T ss_pred hhhhhccc--ccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhh
Confidence 33444445 78888888888888888888888877643 45664433
No 83
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=23.87 E-value=7.1e+02 Score=24.53 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVV 201 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~~~~ 201 (336)
+.-.-++..+++++.+++....-.+... + .+.+.|.+.+++++....|....+.+.+.++. +.++..++.+.
T Consensus 284 ~~~~~lF~v~llasg~~s~~~~~~a~~~-~----~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~---~g~~~~lL~~s 355 (416)
T COG1914 284 SAAFVLFGVALLAAGLSSTVVATYAGQI-V----MEGFLNWRIPLWRRRLITRTFAIVPGLAIIIL---FGDPARLLVFS 355 (416)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhhHH-H----HHhhhcccCchHhhHHHHHHHHHHHHHHHHHH---HccHHHHHHHH
Confidence 4556677777888877766655444433 2 33333434455666667775555543333221 12556677766
Q ss_pred HHhheee
Q psy15005 202 SFITAIE 208 (336)
Q Consensus 202 ~~~~g~~ 208 (336)
+.+.|..
T Consensus 356 qvl~~~~ 362 (416)
T COG1914 356 QVLLSVI 362 (416)
T ss_pred HHHHHHH
Confidence 6666554
No 84
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=23.41 E-value=59 Score=31.99 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.7
Q ss_pred cccccHHHHHHHhhcchhhhHHHHHH
Q psy15005 288 LRLTSAYEYLEMRFDSKVRVMASALY 313 (336)
Q Consensus 288 ~~~~s~~eyl~~Rf~~~~r~~~s~~f 313 (336)
.|..|..||+++|+.+..|.|.+.--
T Consensus 287 ~g~~tl~eF~~RRl~PAmrTC~a~~~ 312 (420)
T PF11902_consen 287 PGYQTLSEFLERRLTPAMRTCEAVER 312 (420)
T ss_pred CCCCcHHHHHHHHhhHHHHHHHHHHH
Confidence 37889999999999999999987653
No 85
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=21.77 E-value=1.4e+02 Score=28.33 Aligned_cols=27 Identities=7% Similarity=-0.054 Sum_probs=21.8
Q ss_pred cccHHHHHHHhhcchhhhHHHHHHHHH
Q psy15005 290 LTSAYEYLEMRFDSKVRVMASALYIIQ 316 (336)
Q Consensus 290 ~~s~~eyl~~Rf~~~~r~~~s~~f~~~ 316 (336)
-.+.|||.|+-|||..+...+..+++.
T Consensus 58 ~~~~~~~~~~~~G~~~g~~~~~~~~~~ 84 (381)
T TIGR00837 58 GASFNTIAKDLLGKTGNIIAGLSLLFV 84 (381)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 578999999999999888877655543
No 86
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=21.33 E-value=1.2e+02 Score=22.61 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=23.1
Q ss_pred ccccHHHHHHHhhcchhhhHHHHHHHHHH
Q psy15005 289 RLTSAYEYLEMRFDSKVRVMASALYIIQM 317 (336)
Q Consensus 289 ~~~s~~eyl~~Rf~~~~r~~~s~~f~~~~ 317 (336)
-+.++||.|.+||+-+-|..+|..=++..
T Consensus 27 T~~di~e~L~~~f~vs~~~VasMVG~i~S 55 (83)
T PF10826_consen 27 TTDDIYERLKEKFDVSYRGVASMVGLIHS 55 (83)
T ss_pred eHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 34567899999999999999988766543
No 87
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=20.65 E-value=7.8e+02 Score=23.83 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=19.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhh
Q psy15005 11 SHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWE 53 (336)
Q Consensus 11 ~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~ 53 (336)
...|++.+..-..+-..++....+........+ .++ ++..+
T Consensus 152 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 192 (440)
T PF02133_consen 152 AIYGMKALRRLAVIAAPILLVVFIGMLIWALSK-AGG-GPLLS 192 (440)
T ss_dssp HCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-CT--HHHCC
T ss_pred HhcCHHHHHhHHhhhhHHHHhhhhheeEEEeec-CCc-chhhh
Confidence 344555555544444444444444444555555 444 44433
No 88
>KOG4112|consensus
Probab=20.46 E-value=4e+02 Score=20.40 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=30.1
Q ss_pred HHHHHhhhcCC-C-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15005 152 MQDFLTNVLAV-Q-IPENKGAVISKYLSILYGVISFLLIFIVERLG 195 (336)
Q Consensus 152 ~~Di~~~~~~~-~-~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~~ 195 (336)
..|..++..-+ | .+.|+.-+..|.+..+.++++.+.++..+..+
T Consensus 5 l~~~~~kL~~~iDf~gQkkaEr~~q~ilti~aiVg~i~Gf~~Qqls 50 (101)
T KOG4112|consen 5 LQDVQRKLVFPIDFPGQKKAERFQQLILTIGAIVGFIYGFAQQQLS 50 (101)
T ss_pred HHHHHHhCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555443321 1 34566678899999999999999998766544
No 89
>KOG1303|consensus
Probab=20.11 E-value=8.6e+02 Score=24.09 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=53.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHH
Q psy15005 64 LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASA 143 (336)
Q Consensus 64 r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~ 143 (336)
+|+...+-......++.....| |..|++ +.+|++.+.+- -| .|+....-+.+......+.-=
T Consensus 261 ~~~~lis~~~~~~~y~~vai~G---Y~aFG~---------~~~~~il~s~~---~p--~~~~~~ani~i~~h~i~s~~i- 322 (437)
T KOG1303|consen 261 KKALLISYIIVTFLYFPVAIIG---YWAFGD---------SVPDNILLSLQ---PP--TWLIALANILIVLHLIGSYQI- 322 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh---hhhhcc---------ccchhhhhccc---Cc--hhHHHHHHHHHHHHHhhhhhh-
Confidence 6666666555555555555554 666664 23455544321 15 777776544444333333221
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCc---hh--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy15005 144 INSLAAVTMQDFLTNVLAVQIPE---NK--GAVISKYLSILYGVISFLLIFIVERLGSVLQ 199 (336)
Q Consensus 144 l~a~st~~~~Di~~~~~~~~~s~---~~--~~~~~R~~~vv~~i~~i~~a~~~~~~~~i~~ 199 (336)
-+.-..|..++..+.+.++ +. ...+.|...+ +....+|..++..+.+..
T Consensus 323 ----~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v---~~~~~vA~~~PfFg~l~~ 376 (437)
T KOG1303|consen 323 ----YAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFV---AVTTFVALSFPFFGDLLS 376 (437)
T ss_pred ----hhcchHHHHHHHhccCCccccccccceeeehhhHHH---HHHHHHHHhccccHhHHH
Confidence 1222345565555423221 11 2233444433 445556776666555544
Done!