Query psy15005
Match_columns 336
No_of_seqs 285 out of 2370
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 18:01:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 100.0 8.1E-33 2.8E-37 276.0 6.4 229 3-237 141-440 (530)
2 2xq2_A Sodium/glucose cotransp 100.0 4E-31 1.4E-35 267.1 6.6 229 3-237 170-469 (593)
3 3dh4_A Sodium/glucose cotransp 99.3 3E-13 1E-17 134.6 4.1 116 214-336 13-129 (530)
4 2xq2_A Sodium/glucose cotransp 99.3 5.5E-13 1.9E-17 134.5 3.7 115 214-335 42-157 (593)
5 2jln_A MHP1; hydantoin, transp 95.4 0.4 1.4E-05 46.7 15.7 154 9-190 155-353 (501)
6 3l1l_A Arginine/agmatine antip 87.8 17 0.00058 33.8 15.7 43 106-150 258-300 (445)
7 3gia_A Uncharacterized protein 67.4 50 0.0017 30.5 11.7 41 107-149 257-297 (444)
8 4djk_A Probable glutamate/gamm 44.0 1.6E+02 0.0056 27.5 11.0 34 122-155 287-323 (511)
9 2jln_A MHP1; hydantoin, transp 33.7 35 0.0012 32.8 4.3 75 260-335 55-132 (501)
10 3l1l_A Arginine/agmatine antip 28.8 68 0.0023 29.5 5.4 32 292-323 72-103 (445)
11 2lsw_A Disabled homolog 2; pla 25.3 17 0.00059 21.8 0.3 16 293-308 17-33 (40)
12 1pd7_B MAD1; PAH2, SIN3, eukar 23.8 34 0.0012 18.7 1.2 8 293-300 11-18 (26)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=99.97 E-value=8.1e-33 Score=275.99 Aligned_cols=229 Identities=19% Similarity=0.234 Sum_probs=179.0
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhh-------hhccc---------Cc------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWE-------DSTST---------NR------ 60 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~-------~~~~~---------~~------ 60 (336)
++++++||..||+|||+|||++|+++|+++.+++.+.++.+ .||++++.+ ..++. +.
T Consensus 141 ~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~-~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (530)
T 3dh4_A 141 ALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSF-IGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPG 219 (530)
T ss_dssp HHHHHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCT
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChhhHHHHHHHHHhcCchhcccccCCCCccccccch
Confidence 44668999999999999999999999999999998888887 666543322 11110 00
Q ss_pred c----------hH----------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC---Cc------c
Q psy15005 61 I----------ES----------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCD---PL------T 99 (336)
Q Consensus 61 ~----------~~----------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~------~ 99 (336)
+ ++ ||+.+++.....++.++..++|+++++.+++++ +. .
T Consensus 220 ~~~~i~~~~~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~ 299 (530)
T 3dh4_A 220 IAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATN 299 (530)
T ss_dssp THHHHSTHHHHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhccccccc
Confidence 0 00 788888887777777778899999998885421 00 0
Q ss_pred ccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH
Q psy15005 100 KHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSIL 179 (336)
Q Consensus 100 ~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv 179 (336)
.++.+++|+++|.+++ .+| |++.|+++++++||+|||+||.+|+.|+.+++|+||+++|||+||||+++++|+.+++
T Consensus 300 ~~~~~~~d~~~p~l~~-~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~ 376 (530)
T 3dh4_A 300 LPSAANADKAYPWLTQ-FLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVV 376 (530)
T ss_dssp CCCSSSGGGHHHHHHT-TCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCSCSSHHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHH-Hcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 0234689999999986 999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhheee--------ecCcCccccccCCcchhhheeehhhcccc
Q psy15005 180 YGVISFLLIFIVERLGSVLQVVSFITAIE--------LLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 180 ~~i~~i~~a~~~~~~~~i~~~~~~~~g~~--------llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
++++++.+|...++.++++++.+.+.|.+ ++|++||| .|++|+++++..|....+.
T Consensus 377 ~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~llgl~wkr--~~~~gA~~g~i~G~~~~~~ 440 (530)
T 3dh4_A 377 ALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKK--TTSKGAIIGVVASIPFALF 440 (530)
T ss_dssp HHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence 99999999976666667777766554432 78999995 6999999999999988854
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=99.96 E-value=4e-31 Score=267.05 Aligned_cols=229 Identities=19% Similarity=0.230 Sum_probs=179.1
Q ss_pred EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhh-------hhcc-------cCc--------
Q psy15005 3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWE-------DSTS-------TNR-------- 60 (336)
Q Consensus 3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~-------~~~~-------~~~-------- 60 (336)
++++++||..||+|||+|||++|+++|+++.+++.+.++.+ .||++++.+ +.++ ++.
T Consensus 170 ~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~l~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (593)
T 2xq2_A 170 ALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSF-IGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPG 248 (593)
T ss_dssp HHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCT
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhHHHHHHHHHhhChhhcccccCCCCcccccchH
Confidence 34568999999999999999999999999999988888887 676544322 1111 000
Q ss_pred ch------H--------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHH-hcCC------CCcc--
Q psy15005 61 IE------S--------------------------LIALWVSAVGLILIYCINAYMGAILYSQ-YKTC------DPLT-- 99 (336)
Q Consensus 61 ~~------~--------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~------~~~~-- 99 (336)
+. + ||+.+++.....++.+...++|+.+++. ++++ |+..
T Consensus 249 ~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~ 328 (593)
T 2xq2_A 249 IAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATN 328 (593)
T ss_dssp THHHHSTHHHHHHHHHTTTCSHHHHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----C
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 00 0 8888888888777778888999998877 3211 0000
Q ss_pred ccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH
Q psy15005 100 KHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSIL 179 (336)
Q Consensus 100 ~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv 179 (336)
.++.+++|+++|.++ +.+| ||+.|+++++++||.|||+||.+|+.|+.++||+|||++||++||||+++++|+.+++
T Consensus 329 ~p~~~~~d~~~p~l~-~~lp--~~l~gl~~a~llaA~mST~~s~l~a~st~~~~Diy~~~~~~~~s~~~~l~v~Ri~~v~ 405 (593)
T 2xq2_A 329 LPSAANADKAYPWLT-QFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVV 405 (593)
T ss_dssp CCCSTBGGGHHHHHH-HTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHH-HHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 012357899999999 9999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhheee--------ecCcCccccccCCcchhhheeehhhcccc
Q psy15005 180 YGVISFLLIFIVERLGSVLQVVSFITAIE--------LLGNPSEFYNHGSQFFLICISFVLVVPLT 237 (336)
Q Consensus 180 ~~i~~i~~a~~~~~~~~i~~~~~~~~g~~--------llGl~~~~~~~~~~g~~~~i~~gl~~s~~ 237 (336)
++++++.+++..++.++++++.+...|.. ++|++||| .|++|+++++..|....+.
T Consensus 406 ~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~llglfwkr--~~~~gA~~g~i~G~~~~~~ 469 (593)
T 2xq2_A 406 ALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFLLGLFWKK--TTSKGAIIGVVASIPFALF 469 (593)
T ss_dssp HHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence 99999999976555567777655443332 78999995 6999999999999888744
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=99.34 E-value=3e-13 Score=134.62 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=101.6
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccH
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSA 293 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~ 293 (336)
+|++.++|+..++....++.++..+.. .++|.|+++|.+|+...++++.+.+..+++++++.|.++|.|.+|.
T Consensus 13 ~dy~laGR~l~~~~~~~s~~at~~Sa~-------~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~T~ 85 (530)
T 3dh4_A 13 XXXXXAGKSLPWWAVGASLIAANISAE-------QFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTI 85 (530)
T ss_dssp HHHHCCCSCCCHHHHHHHHHHHHCSHH-------HHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTCCSH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 356678999999999999988865544 5899999999999998878888878888899999999999999999
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHhhC
Q psy15005 294 YEYLEMRFDSKVRVMASALYIIQMV-FYTSVAVFAPALALSHAL 336 (336)
Q Consensus 294 ~eyl~~Rf~~~~r~~~s~~f~~~~~-~~~~~~ly~~al~l~~v~ 336 (336)
|||+|+|||++.|.+.++++++.++ .+++..+|++++++++++
T Consensus 86 ~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~ 129 (530)
T 3dh4_A 86 PEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL 129 (530)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987665 479999999999998764
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=99.31 E-value=5.5e-13 Score=134.47 Aligned_cols=115 Identities=15% Similarity=0.271 Sum_probs=93.8
Q ss_pred ccccccCCcchhhheeehhhcccccccccceeehccccccccccccChhHHHHHHHHHHHHHHhhheeeceeeccccccH
Q psy15005 214 SEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSA 293 (336)
Q Consensus 214 ~~~~~~~~~g~~~~i~~gl~~s~~~~~~~p~~~~~~lg~p~~~y~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~s~ 293 (336)
+|++.++|+..++....++.++..+.. .++|.|+++|.+|+...++++.+.+..+++++++.|.++|.|.+|.
T Consensus 42 ~dy~laGR~l~~~~~~~Sl~at~~sa~-------t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~ 114 (593)
T 2xq2_A 42 EDYFLAGKSLPWWAVGASLIAANISAE-------QFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTI 114 (593)
T ss_dssp ---------CCHHHHHHHHHGGGSSHH-------HHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTCCSH
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcHH-------HHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 356667888888888888887755443 5899999999999998888888888888899999999999999999
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHhh
Q psy15005 294 YEYLEMRFDSKVRVMASALYIIQMV-FYTSVAVFAPALALSHA 335 (336)
Q Consensus 294 ~eyl~~Rf~~~~r~~~s~~f~~~~~-~~~~~~ly~~al~l~~v 335 (336)
|||+|+|||++.|.+.++++++.++ .+++..+|+++.+++++
T Consensus 115 ~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~ 157 (593)
T 2xq2_A 115 PEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI 157 (593)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987665 47999999999999875
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=95.41 E-value=0.4 Score=46.74 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=84.8
Q ss_pred eecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh--hhhhhhhcccCcc---------------------hH--
Q psy15005 9 YASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGF--SQIWEDSTSTNRI---------------------ES-- 63 (336)
Q Consensus 9 Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~--~~~~~~~~~~~~~---------------------~~-- 63 (336)
.+...|+|++.+.|.++..++.+..+.+....+.+ .| + ++..+..++++.. |+
T Consensus 155 ~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~-~g-~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysR 232 (501)
T 2jln_A 155 VTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDG-AD-VSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVK 232 (501)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT-CCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHT
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 45578999999999999999988888777776666 33 3 3443322111111 11
Q ss_pred -----HH------------HHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHHHHHhccCCCh-h
Q psy15005 64 -----LI------------ALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGI-P 125 (336)
Q Consensus 64 -----r~------------a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~lp~~~~~-~ 125 (336)
|+ ..+....+..+...+..++|+..-...+. .+|.+ .+.+.+++ ++. .
T Consensus 233 y~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~---------~dp~~----~l~~~l~~-~~~~~ 298 (501)
T 2jln_A 233 ECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGE---------WNPVI----AITEVVGG-VSIPM 298 (501)
T ss_dssp TBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---------SCHHH----HHHHHHTC-CCHHH
T ss_pred cCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------cCHHH----HHHHHhcc-chHHH
Confidence 22 33333334444444556666643322111 22322 33343432 444 5
Q ss_pred HHHH-HHHHHhhhhhHHH-HHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15005 126 GFFV-AGIFAASLGTVAS-AINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFI 190 (336)
Q Consensus 126 gl~~-a~~~aA~mST~~s-~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~ 190 (336)
.+.. ..+..+.++|.+. .+.+.+..+.++ .++++ + . |..+++.++++++++..
T Consensus 299 ~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~-~~~~i----~------~-~~~~~i~~vi~~~i~~~ 353 (501)
T 2jln_A 299 AILFQVFVLLATWSTNPAANLLSPAYTLCST-FPRVF----T------F-KTGVIVSAVVGLLMMPW 353 (501)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH-STTTC----C------H-HHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-Ccccc----c------h-hHHHHHHHHHHHHHHHH
Confidence 6666 7778888888884 777877777765 22211 1 1 33344556666666544
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=87.82 E-value=17 Score=33.79 Aligned_cols=43 Identities=14% Similarity=-0.016 Sum_probs=33.0
Q ss_pred CccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy15005 106 SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV 150 (336)
Q Consensus 106 ~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~ 150 (336)
.+..+....++..+ ++...++..+++.+..++..+.+.+.+=.
T Consensus 258 ~~~p~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 300 (445)
T 3l1l_A 258 SASPFGDAARMALG--DTAGAIVSFCAAAGCLGSLGGWTLLAGQT 300 (445)
T ss_dssp TTCTHHHHHHHHHC--TTHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777 88888888888888889888888777663
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=67.45 E-value=50 Score=30.53 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=25.3
Q ss_pred ccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHH
Q psy15005 107 DQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAA 149 (336)
Q Consensus 107 d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st 149 (336)
|..+.....+..+ ++..-++..+.+.+..++..+.+.+.+=
T Consensus 257 ~~~~~~~~~~~~g--~~~~~~i~~~~~~~~~~~~~~~~~~~sR 297 (444)
T 3gia_A 257 ENALAVAAKPFLG--NLGFLLISIGALFSISSAMNATIYGGAN 297 (444)
T ss_dssp GGHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred chhHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566 5655566666677777777777666443
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=43.98 E-value=1.6e+02 Score=27.49 Aligned_cols=34 Identities=21% Similarity=0.014 Sum_probs=21.6
Q ss_pred CChhHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHH
Q psy15005 122 TGIPGFFVAGIFAASLGTVASAINSLAAV---TMQDF 155 (336)
Q Consensus 122 ~~~~gl~~a~~~aA~mST~~s~l~a~st~---~~~Di 155 (336)
++...++...++.+.+++..+.+.+.+=. .++|=
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg 323 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKN 323 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46666777777777777777766655542 44553
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=33.66 E-value=35 Score=32.81 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHHHHhhheee---ceeeccccccHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy15005 260 GSQFFLICISFVLVVPLTSRLYL---PVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHA 335 (336)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~---P~~~~~~~~s~~eyl~~Rf~~~~r~~~s~~f~~~~~~~~~~~ly~~al~l~~v 335 (336)
|+.+++..+...+..++.+.+.. ..=.|.++. -+++.+.+||++-.++.+++-.+..+.+.++..+.++.+++++
T Consensus 55 GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~-~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~ 132 (501)
T 2jln_A 55 SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN-FTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEI 132 (501)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC-HHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-hhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444444443332221 122456666 6788999999999999999999999999999999999988765
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=28.80 E-value=68 Score=29.54 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=25.9
Q ss_pred cHHHHHHHhhcchhhhHHHHHHHHHHHHHHHH
Q psy15005 292 SAYEYLEMRFDSKVRVMASALYIIQMVFYTSV 323 (336)
Q Consensus 292 s~~eyl~~Rf~~~~r~~~s~~f~~~~~~~~~~ 323 (336)
+.|+|.++.+|+.........+.+......+.
T Consensus 72 g~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~ 103 (445)
T 3l1l_A 72 GSYAYARRCFGPFLGYQTNVLYWLACWIGNIA 103 (445)
T ss_dssp THHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHhHcCChHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998888888888776654433
No 11
>2lsw_A Disabled homolog 2; platelet aggregation inhibitor, sulfatides, dodecylphosphoch blood clotting; NMR {Homo sapiens}
Probab=25.34 E-value=17 Score=21.78 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=12.4
Q ss_pred HHHHHHHhh-cchhhhH
Q psy15005 293 AYEYLEMRF-DSKVRVM 308 (336)
Q Consensus 293 ~~eyl~~Rf-~~~~r~~ 308 (336)
..|||-+|| |+++|.=
T Consensus 17 se~~Li~RfkGdGvrYK 33 (40)
T 2lsw_A 17 TDEYLLARFKGDGVKYK 33 (40)
T ss_dssp CSTTHHHHHTTTHHHHH
T ss_pred hHHHHHHHhcCCCeeee
Confidence 358999999 7888753
No 12
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.84 E-value=34 Score=18.66 Aligned_cols=8 Identities=63% Similarity=0.887 Sum_probs=6.3
Q ss_pred HHHHHHHh
Q psy15005 293 AYEYLEMR 300 (336)
Q Consensus 293 ~~eyl~~R 300 (336)
+-||||+|
T Consensus 11 AAeyLErr 18 (26)
T 1pd7_B 11 AADYLERR 18 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46899987
Done!