Query psy15005
Match_columns 336
No_of_seqs 285 out of 2370
Neff 8.2
Searched_HMMs 13730
Date Fri Aug 16 18:01:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15005.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15005hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 22.8 71 0.0052 19.4 4.5 23 163-185 17-39 (56)
2 d2a65a1 f.54.1.1 (A:5-513) Na( 16.6 2.6E+02 0.019 24.1 9.2 44 109-153 322-365 (509)
3 d1si2a_ b.34.14.1 (A:) Eukaryo 12.0 33 0.0024 24.5 1.0 18 289-306 79-96 (126)
4 d1gwca2 c.47.1.5 (A:4-86) Clas 9.9 52 0.0038 20.9 1.4 13 291-303 67-79 (83)
5 d1v2aa2 c.47.1.5 (A:1-83) Clas 9.9 39 0.0028 21.8 0.7 16 291-306 65-80 (83)
6 d1k0ma2 c.47.1.5 (A:6-91) Chlo 9.6 53 0.0038 21.5 1.3 14 290-303 72-85 (86)
7 d1k0da2 c.47.1.5 (A:109-200) Y 8.2 54 0.0039 21.6 0.9 13 292-304 75-87 (92)
8 d1dq3a3 d.95.2.2 (A:129-226) P 7.9 69 0.005 20.9 1.3 14 291-304 52-65 (98)
9 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 7.8 60 0.0044 20.9 0.9 18 286-303 15-32 (75)
10 d1ug8a_ d.68.7.1 (A:) Poly(A)- 7.6 55 0.004 21.8 0.7 14 293-306 45-58 (87)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.84 E-value=71 Score=19.40 Aligned_cols=23 Identities=4% Similarity=0.128 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q psy15005 163 QIPENKGAVISKYLSILYGVISF 185 (336)
Q Consensus 163 ~~s~~~~~~~~R~~~vv~~i~~i 185 (336)
+.+.++-.+++++..+.+.+++.
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~ 39 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGI 39 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655544443
No 2
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=16.56 E-value=2.6e+02 Score=24.15 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=33.4
Q ss_pred chHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy15005 109 MLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQ 153 (336)
Q Consensus 109 ~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~ 153 (336)
.+|.... .+|..+....++...++-+.++|.-+.+....+.+.+
T Consensus 322 ~~P~~fs-~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d 365 (509)
T d2a65a1 322 TLPAIFS-QTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLED 365 (509)
T ss_dssp HHHHHHT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhh-cCCcchhHHHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 4665543 3454366788999999999999999999998887743
No 3
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=33 Score=24.46 Aligned_cols=18 Identities=6% Similarity=0.366 Sum_probs=14.9
Q ss_pred ccccHHHHHHHhhcchhh
Q psy15005 289 RLTSAYEYLEMRFDSKVR 306 (336)
Q Consensus 289 ~~~s~~eyl~~Rf~~~~r 306 (336)
+-.|+.||.++|||...|
T Consensus 79 ~~iTV~~YFk~~Y~~~L~ 96 (126)
T d1si2a_ 79 VECTVAQYFKQKYNLQLK 96 (126)
T ss_dssp CEEEHHHHHHHTSCCCCS
T ss_pred eEEEHHHHHHHHcCcccC
Confidence 447999999999997654
No 4
>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}
Probab=9.91 E-value=52 Score=20.93 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.4
Q ss_pred ccHHHHHHHhhcc
Q psy15005 291 TSAYEYLEMRFDS 303 (336)
Q Consensus 291 ~s~~eyl~~Rf~~ 303 (336)
..+-|||++||++
T Consensus 67 ~~I~~YL~e~~p~ 79 (83)
T d1gwca2 67 MIILQYIDEVFAS 79 (83)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC
Confidence 4577999999975
No 5
>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}
Probab=9.87 E-value=39 Score=21.83 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=11.8
Q ss_pred ccHHHHHHHhhcchhh
Q psy15005 291 TSAYEYLEMRFDSKVR 306 (336)
Q Consensus 291 ~s~~eyl~~Rf~~~~r 306 (336)
..+=|||++|||+..+
T Consensus 65 ~aI~~YL~~~~~~~~~ 80 (83)
T d1v2aa2 65 YAIVLYLVETYAKDDT 80 (83)
T ss_dssp HHHHHHHHHHHCSSST
T ss_pred HHHHHHHHHHhCCCCC
Confidence 3466899999986554
No 6
>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.59 E-value=53 Score=21.46 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=10.8
Q ss_pred cccHHHHHHHhhcc
Q psy15005 290 LTSAYEYLEMRFDS 303 (336)
Q Consensus 290 ~~s~~eyl~~Rf~~ 303 (336)
...+-||||+||+.
T Consensus 72 S~~I~~YLee~~~~ 85 (86)
T d1k0ma2 72 TNKIEEFLEAVLCP 85 (86)
T ss_dssp HHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCC
Confidence 35678999999874
No 7
>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.22 E-value=54 Score=21.59 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=10.7
Q ss_pred cHHHHHHHhhcch
Q psy15005 292 SAYEYLEMRFDSK 304 (336)
Q Consensus 292 s~~eyl~~Rf~~~ 304 (336)
.+-|||++||++.
T Consensus 75 aI~~YL~~~y~~~ 87 (92)
T d1k0da2 75 AILLHLVNKYYKE 87 (92)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC
Confidence 4679999999764
No 8
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=7.91 E-value=69 Score=20.95 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=11.6
Q ss_pred ccHHHHHHHhhcch
Q psy15005 291 TSAYEYLEMRFDSK 304 (336)
Q Consensus 291 ~s~~eyl~~Rf~~~ 304 (336)
.++.+|||+-||++
T Consensus 52 ~~in~~le~tfgkr 65 (98)
T d1dq3a3 52 EIINDYLEKTFGRK 65 (98)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccc
Confidence 35789999999986
No 9
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.80 E-value=60 Score=20.93 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.6
Q ss_pred eccccccHHHHHHHhhcc
Q psy15005 286 MKLRLTSAYEYLEMRFDS 303 (336)
Q Consensus 286 ~~~~~~s~~eyl~~Rf~~ 303 (336)
.|+-+.-+||++++||.-
T Consensus 15 ~~ltL~eIy~~i~~~fpy 32 (75)
T d1kq8a_ 15 GRLTLAEINEYLMGKFPF 32 (75)
T ss_dssp SCBCHHHHHHHHHHHCTT
T ss_pred CCccHHHHHHHHHHhCcc
Confidence 456788999999999853
No 10
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.57 E-value=55 Score=21.83 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=10.8
Q ss_pred HHHHHHHhhcchhh
Q psy15005 293 AYEYLEMRFDSKVR 306 (336)
Q Consensus 293 ~~eyl~~Rf~~~~r 306 (336)
+||.++.||-++.+
T Consensus 45 IYQtl~~kfp~kI~ 58 (87)
T d1ug8a_ 45 IYQTLSWKYPKGIH 58 (87)
T ss_dssp HHHHHHHHSSSSEE
T ss_pred HHHHHHHhCCCcce
Confidence 68888999877653
Done!