RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15005
(336 letters)
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 193 bits (494), Expect = 1e-57
Identities = 85/253 (33%), Positives = 130/253 (51%), Gaps = 48/253 (18%)
Query: 2 VYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRI 61
V VC FY + GG+KAV+ TD FQ V+ ++ +++ G + GG S++WE + R+
Sbjct: 157 VGIVCTFYTTLGGLKAVVWTDVFQVVVMFGGVLAVIIKG-TIDVGGLSEVWEIAEEGGRL 215
Query: 62 ESL-----------------------------------------------IALWVSAVGL 74
E ALW++ VGL
Sbjct: 216 EFFNFDPDPTVRHTFWSLVIGGTFTWLSLYGVNQAQVQRYLSLPSLKQAKKALWLNIVGL 275
Query: 75 ILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFA 134
+LI + + G ++Y++Y CDPLT +I DQ+LP +V+++LG G+PG FVAGIF+
Sbjct: 276 VLILSLCVFSGLVIYAKYHDCDPLTAGLISKPDQLLPYFVMDILGHLPGLPGLFVAGIFS 335
Query: 135 ASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERL 194
A+L T++S +NSLAAVT++DF+ + E K I K L +++G++ L F+ E L
Sbjct: 336 AALSTLSSGLNSLAAVTLEDFIKPFFKKILSERKATNIMKGLVLVFGLLCIGLAFLAELL 395
Query: 195 GSVLQVVSFITAI 207
G VLQ I I
Sbjct: 396 GGVLQAALSIFGI 408
Score = 119 bits (302), Expect = 3e-30
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 40/136 (29%)
Query: 200 VVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNH 259
+ SFI+AI LLG P+E Y +G+Q++LI IS+++V P+T+ ++LPVF L+LTS YE
Sbjct: 50 LASFISAITLLGTPAEVYLYGTQYWLIVISYLIVGPITAYIFLPVFYNLQLTSTYE---- 105
Query: 260 GSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVF 319
YLE+RF+ VR++AS L+I+QM+
Sbjct: 106 ------------------------------------YLELRFNRSVRLLASLLFILQMLL 129
Query: 320 YTSVAVFAPALALSHA 335
Y + ++APALAL+
Sbjct: 130 YLGIVIYAPALALNQV 145
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1
and 2 and related proteins; solute-binding domain.
SMCT1 is a high-affinity transporter of various
monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. Human SMCT1 (hSMCT1, also
called AIT) is encoded by the tumor suppressor gene
SLC5A8. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. It also mediates
iodide transport from thyrocyte into the colloid lumen
in thyroid gland and, through transporting L-lactate and
ketone bodies, helps maintain the energy status and the
function of neurons. SMCT2 is a low-affinity transporter
for short-chain fatty acids, lactate, pyruvate, and
nicotinate. hSMCT2 is encoded by the SLC5A12 gene. SMCT2
is expressed in the kidney, small intestine, skeletal
muscle, and retina. In the kidney, SMCT2 may initiate
lactate absorption in the early parts of the tubule,
SMCT1 in the latter parts of the tubule. In the retina,
SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner. This subgroup belongs to the solute carrier 5
(SLC5) transporter family.
Length = 536
Score = 122 bits (307), Expect = 6e-31
Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 49/244 (20%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIE-- 62
VC FY + GG+KAV+ TD FQ ++++ + +++ L GG I DS R+
Sbjct: 166 VCTFYCTLGGLKAVVWTDVFQVGIMVAGFLSVIIRAVVLQ-GGIGNILNDSYYGGRLNFW 224
Query: 63 ---------------------------------------------SLIALWVSAVGLILI 77
+ ++L+++ VGL I
Sbjct: 225 DFDPNPLRRHTFWTIVVGGTFTWTGIYGVNQSQVQRYISCKTRFHAKLSLYINLVGLWAI 284
Query: 78 YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
+ G +YS YK CDP T + DQ++P VL++LG Y G+PG FVA ++ +L
Sbjct: 285 LVCAVFCGLAMYSIYKDCDPWTAKFVSAPDQLMPYLVLDILGDYPGLPGLFVACAYSGTL 344
Query: 138 GTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSV 197
TV+S+IN+LAAVT++D + + E K + ISK +S+LYG + + + +G +
Sbjct: 345 STVSSSINALAAVTVEDLIKPYFR-SLSERKLSWISKGMSLLYGAVCIGMAGLASLMGGL 403
Query: 198 LQVV 201
LQ
Sbjct: 404 LQAA 407
Score = 88.6 bits (220), Expect = 2e-19
Identities = 36/78 (46%), Positives = 56/78 (71%)
Query: 255 EFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYI 314
E Y G+ F + IS+ VV ++S ++LPVF +L +TS YEYLE+RF+ VR++ + L+I
Sbjct: 71 EVYRFGAIFIIFAISYTFVVLISSEVFLPVFYRLGITSTYEYLELRFNKPVRLLGTVLFI 130
Query: 315 IQMVFYTSVAVFAPALAL 332
+Q + YT + ++APALAL
Sbjct: 131 VQTILYTGIVIYAPALAL 148
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is a
high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. Its expression is under
the control of the C/EBP transcription factor. Its
tumor-suppressive role is related to uptake of butyrate,
propionate, and pyruvate, these latter are inhibitors of
histone deacetylases. SMCT1 is expressed in the colon,
small intestine, kidney, thyroid gland, retina, and
brain. SMCT1 may contribute to the intestinal/colonic
and oral absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 118 bits (298), Expect = 9e-30
Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 49/244 (20%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIE-- 62
VC FY + GG+KAVI TD FQ ++++ + +++ L GG I DS R+
Sbjct: 166 VCTFYCTLGGLKAVIWTDVFQVGIMVAGFLSVIIRAVVLQ-GGIGPILNDSYYGGRLNFW 224
Query: 63 ---------------------------------------------SLIALWVSAVGLILI 77
+ ++L+++ VGL I
Sbjct: 225 DFDPNPLKRHTFWTIVIGGTFTWTSIYGVNQSQVQRYISCKTRFHAKLSLYINLVGLWAI 284
Query: 78 YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
+ G +YS YK CDP T + DQ++P VL++LG Y G+PG FVA ++ +L
Sbjct: 285 LSCAVFSGLAMYSIYKDCDPWTAKDVSAPDQLMPYLVLDILGDYPGLPGLFVACAYSGTL 344
Query: 138 GTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSV 197
TV+S+IN+LAAVT++D + + E K + IS +S+ YG + + + +G++
Sbjct: 345 STVSSSINALAAVTVEDLIKPYFR-SLSERKLSWISMGMSLFYGALCIGMAGLASLMGAL 403
Query: 198 LQVV 201
LQ
Sbjct: 404 LQAA 407
Score = 84.0 bits (208), Expect = 8e-18
Identities = 34/78 (43%), Positives = 56/78 (71%)
Query: 255 EFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYI 314
E Y G+ F + S+ +VV +++ ++LPVF +L +TS YEYLE+RF+ VR++ + L+I
Sbjct: 71 EVYRFGAIFSIFAFSYAIVVLISAEVFLPVFYRLGITSTYEYLELRFNKCVRLLGTVLFI 130
Query: 315 IQMVFYTSVAVFAPALAL 332
+Q + YT + ++APALAL
Sbjct: 131 VQTILYTGIVIYAPALAL 148
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 115 bits (290), Expect = 9e-29
Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 49/242 (20%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRI--- 61
VC Y + GG+KAVI TD FQ V+ + + ++++G + GG +++W + + +RI
Sbjct: 163 VCTLYTALGGLKAVIWTDVFQTVVMFAGQLAVIIVGS-IQAGGIARVWRVAANGSRIAGF 221
Query: 62 --------------------------------------------ESLIALWVSAVGLILI 77
+++++ + +
Sbjct: 222 DLNPDPLERHTFWTLGVGGVFLMLALYGVNQAQVQRYLSSRTEKQAIMSCYAVFPCQQVS 281
Query: 78 YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
C+ MG +++++Y C PL + + SDQM+ +V++VL G+PG F+A +F+ +L
Sbjct: 282 LCLGCLMGLVMFARYGECSPLDQGYVATSDQMVLYFVMDVLRDLPGLPGLFIACLFSGAL 341
Query: 138 GTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSV 197
T++SA NSLA VTM+D L + E + ++SK L++ YG++ + ++ +GSV
Sbjct: 342 STISSAFNSLATVTMED-LIKPHFPDMTEARATLLSKGLALGYGLLCLAMAYLASLMGSV 400
Query: 198 LQ 199
LQ
Sbjct: 401 LQ 402
Score = 81.8 bits (202), Expect = 3e-17
Identities = 36/78 (46%), Positives = 54/78 (69%)
Query: 255 EFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYI 314
E Y G+Q++ + S+ L + + + +++PVF +LRLTSAYEYLE+RF VR+ + +I
Sbjct: 68 EIYTFGTQYWFLGCSYFLGLLIPAHVFIPVFYRLRLTSAYEYLELRFSKTVRICGTVTFI 127
Query: 315 IQMVFYTSVAVFAPALAL 332
QMV Y V ++APALAL
Sbjct: 128 FQMVIYMGVVLYAPALAL 145
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2
and related proteins; solute-binding domain. SMCT2 is a
low-affinity transporter for short-chain fatty acids,
lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2)
is encoded by the SLC5A12 gene. SMCT2 is expressed in
the kidney, small intestine, skeletal muscle, and
retina. In the kidney, it is expressed in the apical
membrane of the proximal convoluted tubule, along the
entire length of the tubule (in contrast to the
high-affinity monocarboxylate transporter SMCT1,
belonging to a different family, which is limited to the
S3 segment of the tubule). SMCT2 may initiate lactate
absorption in the early parts of the tubule. In the
retina, SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner, SMCT2 is expressed exclusively in Muller cells.
Nicotine transport by hSMCT2 is inhibited by several
non-steroidal anti-inflammatory drugs. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 529
Score = 114 bits (286), Expect = 3e-28
Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 49/242 (20%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIE-- 62
VC FY + GG+KAV+ TD+FQ V++ + +++ G + GGF+ +WE + + +R+
Sbjct: 166 VCTFYCTLGGLKAVVWTDAFQMVVMVVGFLTVLIQGS-IHNGGFTNVWETAYNGSRLNIF 224
Query: 63 ---------------------------------------------SLIALWVSAVGLILI 77
+ +AL+++ +GL +I
Sbjct: 225 DFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYLNLLGLWII 284
Query: 78 YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
+ G I+YS YK CDP T I DQ++P +V+ + G+PG FVA F+ +L
Sbjct: 285 LVCAVFSGLIMYSHYKDCDPWTSGFISAPDQLMPYFVMEIFSTMPGLPGLFVACAFSGTL 344
Query: 138 GTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSV 197
TVA++IN+LA VT +DF+ + + E ISK L IL+GV+ + +G V
Sbjct: 345 STVAASINALATVTFEDFVKSCFP-HLSEKLSTWISKGLCILFGVMCTSMAVAASLMGGV 403
Query: 198 LQ 199
+Q
Sbjct: 404 VQ 405
Score = 88.8 bits (220), Expect = 2e-19
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 255 EFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYI 314
E Y G+ F L I++ V+ TS L+LPVF + +TS YEYLE+RF+ VR A+ +YI
Sbjct: 71 EVYRFGASFVLFFIAYTFVIIFTSELFLPVFYRSGITSTYEYLELRFNKPVRYAATLIYI 130
Query: 315 IQMVFYTSVAVFAPALALSH 334
+Q + YT V V+APALAL+
Sbjct: 131 VQTILYTGVVVYAPALALNQ 150
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (product of the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 477
Score = 112 bits (283), Expect = 8e-28
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRI--- 61
+ Y + GG+KAV+ TD Q V+L +++++++ GG +IW ++ + R
Sbjct: 160 LIWLYTTLGGIKAVVWTDVLQTVVMLGGVVLVIIIISVKLGGGLGEIWSTASESGRSRIF 219
Query: 62 --------------------------------------------ESLIALWVSAVGLILI 77
++ ++ + VGL+ +
Sbjct: 220 DFDPDPTSRHTFWKQFIGGIFITIAMTGLDQDMVQRNLSCRNLKDAQKNMYWNGVGLVPV 279
Query: 78 YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
+ +G +LY+ Y+ P + G DQ+ P + L+ L G+PG FVAGI AA++
Sbjct: 280 NLLFLLLGLLLYAYYRDNGPALPGKVAG-DQLFPYFALDGLP--PGLPGLFVAGIIAAAM 336
Query: 138 GTVASAINSLAAVTMQDFL-TNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGS 196
+ SA+N+L V +DFL + Q+ E K ISK L++L G++ F + + GS
Sbjct: 337 SSADSALNALTTVFCEDFLKRFKRSWQLSERKYVHISKSLTLLLGILCFGMALLASNNGS 396
Query: 197 VLQVVSFITA 206
VLQ + I
Sbjct: 397 VLQAILKIAG 406
Score = 84.1 bits (209), Expect = 5e-18
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 255 EFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYI 314
E Y G + + ++L + + + LP+F +L LTS YEYLE RF VR + ++
Sbjct: 61 EVYGSGFTYLQFVLGYLLGYLIIAFVLLPLFYRLNLTSIYEYLEKRFGRSVRKTGAFFFL 120
Query: 315 IQMVFYTSVAVFAPALALS 333
+ + ++A AL L
Sbjct: 121 LSRTLGAGIRLYAVALVLQ 139
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related
proteins; solute-binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. NIS is expressed in the thyroid,
colon, ovary, and in human breast cancers. It mediates
the active transport and the concentration of iodide
from the blood into thyroid follicular cells, a
fundamental step in thyroid hormone biosynthesis, and is
the basis of radioiodine therapy for thyroid cancer.
Mutation in the SLC5A5 gene can result in a form of
thyroid hormone dysgenesis. Human NIS exists mainly as a
dimer stabilized by a disulfide bridge. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 535
Score = 107 bits (268), Expect = 1e-25
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 49/224 (21%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRI--- 61
+C FY + GGMKAVI TD FQ V+LS +++ G L GG S++ E + + +RI
Sbjct: 160 ICTFYTTVGGMKAVIWTDVFQVVVMLSGFWAVLIRGVILV-GGPSRVLEIAQNGSRINLG 218
Query: 62 --------------------------------------------ESLIALWVSAVGLILI 77
++ +AL V+ VGL LI
Sbjct: 219 DFDPDPRSRYTFWTFVVGGTLVWLSMYGVNQAQVQRYVACRTEKQAKLALLVNQVGLFLI 278
Query: 78 YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
A G +++ YK CDPL I DQ +P VL++ G+PG F+A ++ +L
Sbjct: 279 VSSAATCGIVMFVLYKDCDPLLAGRISAPDQYMPYLVLDIFEDLPGVPGLFLACAYSGTL 338
Query: 138 GTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYG 181
T +++IN++AAVT++D + L + K ISK LS++YG
Sbjct: 339 STASTSINAMAAVTVEDLIKPRL-PTLSPRKLVFISKGLSLIYG 381
Score = 73.3 bits (180), Expect = 2e-14
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 255 EFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYI 314
E Y +G +F +C+ +L LT+ L++PVF +L LTS YEYLEMRF VR+ + YI
Sbjct: 65 EAYRYGLKFLWMCLGQLLNSLLTAYLFMPVFYRLGLTSTYEYLEMRFSRSVRLCGTLQYI 124
Query: 315 IQMVFYTSVAVFAPALALSHA 335
+ + YT + ++APAL L+
Sbjct: 125 VATMLYTGIVIYAPALILNQV 145
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 85.7 bits (213), Expect = 1e-18
Identities = 55/252 (21%), Positives = 112/252 (44%), Gaps = 52/252 (20%)
Query: 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRI-- 61
+ I Y GG++AVI TD Q VLL ++ +++ + PGGF Q+++ +++ +
Sbjct: 159 IITIIYTVLGGIEAVIWTDVIQGIVLLGGALLCLIIIIFKIPGGFGQVFDIASANGKFSL 218
Query: 62 --------------------------------------------ESLIALWVSAVGLILI 77
E+ +LW++A+ + +
Sbjct: 219 GDFSFSLTEPTFWVVLIGGIFNNLQNYTSDQDVVQRYLTTKSEKEARKSLWLNALLSLPV 278
Query: 78 YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
+ + ++G LY Y+ L I+G D + P +++ L G+ G +A IFAA++
Sbjct: 279 WLLFFFIGTALYVFYQQHPELLDATING-DAVFPYFIVTQLP--AGVAGLVIAAIFAAAM 335
Query: 138 GTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFL--LIFIVERLG 195
T++S++NS+A V DF L + K +++ +++L G++ L+ +
Sbjct: 336 STLSSSLNSIATVITTDFY-KRLKPGRSDKKYLRVARLITLLVGILGTGGALLLAHSNVK 394
Query: 196 SVLQVVSFITAI 207
S+L + +T +
Sbjct: 395 SLLDLFLKLTGL 406
Score = 68.3 bits (168), Expect = 1e-12
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 263 FFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTS 322
+F+ ++ L PL + ++P F +L +TSAYEYLE RF RV AS L+I+ +
Sbjct: 73 YFVGNLAIPLAAPLAAYFFIPFFRRLNITSAYEYLEKRFGPSARVYASLLFILFQLGRMG 132
Query: 323 VAVFAPALALSHAL 336
+ ++ PALALS
Sbjct: 133 IVLYLPALALSAVT 146
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family. The Solute:Sodium
Symporter (SSS) Family (TC 2.A.21) Members of the SSS
family catalyze solute:Na+ symport. The solutes
transported may be sugars, amino acids, nucleosides,
inositols, vitamins, urea or anions, depending on the
system. Members of the SSS family have been identified
in bacteria, archaea and animals, and all functionally
well characterized members catalyze solute uptake via
Na+ symport. Proteins of the SSS generally share a core
of 13 TMSs, but different members of the family may have
different numbers of TMSs. A 13 TMS topology with a
periplasmic N-terminus and a cytoplasmic C-terminus has
been experimentally determined for the proline:Na+
symporter, PutP, of E. coli [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 407
Score = 71.6 bits (176), Expect = 6e-14
Identities = 49/255 (19%), Positives = 81/255 (31%), Gaps = 55/255 (21%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMG------------------------ 40
+ I Y GG+KAV+ TD+ QA +++ +L +
Sbjct: 126 ITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSP 185
Query: 41 -----------QWLTPGGF---------SQIWEDSTSTNRIESL-------IALWVSAVG 73
P G W + R + +S V
Sbjct: 186 DDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVIVQRCLAAKSAKHAKKGCLISGVL 245
Query: 74 LILIYCINAYMGAILYSQYKTCDP-LTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGI 132
+L G I + Y DP L + SDQ PL V ++ G+ G F+A I
Sbjct: 246 KLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPP--GLAGLFLAAI 303
Query: 133 FAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVE 192
AA + T++S +NS + V D ++ + ++ + +
Sbjct: 304 LAAVMSTLSSQLNSASTVFTMDLYKKIIR-PNASGEKKIVMRGRIAVLVAAVIAGFVAAA 362
Query: 193 RLGSVLQVVSFITAI 207
+ G VLQ V
Sbjct: 363 QGGQVLQYVQEAFGG 377
Score = 50.8 bits (122), Expect = 4e-07
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 250 LTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMA 309
L Y +G + ++++ + L++P+F+ + EYLE RF ++
Sbjct: 25 LGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRILRGL 84
Query: 310 SALYII-QMVFYTSVAVFAPALALSHAL 336
S L +I + Y SV +F+ AL +
Sbjct: 85 SVLSLILYIFLYMSVDLFSGALLIELIT 112
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 65.3 bits (160), Expect = 8e-12
Identities = 48/261 (18%), Positives = 99/261 (37%), Gaps = 62/261 (23%)
Query: 7 IFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRI----- 61
I Y GG+KAVI TD Q ++ + L + + P GF+ + + ++
Sbjct: 159 IIYTVLGGIKAVIWTDVIQMVIIFAGLFIALGFLLKGLPVGFTDALLLAGKSGKLNALDF 218
Query: 62 ------------------------------------------ESLIALWVSAVGLILIYC 79
E+ +L ++ + +
Sbjct: 219 SFDLSETYTFWSGLIGGFFLYLSYFGTDQSQVQRYLTAKSIGEARKSLLMNGLLKFPMQF 278
Query: 80 INAYMGAILYSQYKTCDP-------LTKHIIHGS-----DQMLPLYVLNVLGKYTGIPGF 127
+G +L+ Y+ + + + + + +VLN L G+ G
Sbjct: 279 FILLIGVLLFVFYQFKPFPLSFNPAEVQRLDPNAETNDTNYIFLRFVLNYLPP--GLVGL 336
Query: 128 FVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLL 187
+A IFAA++ ++ SA+NSLA VT+ D + + +S+ L++ +G+++ +
Sbjct: 337 LIAAIFAAAMSSIDSALNSLATVTVIDIYKRFFKKEASDEHYLKVSRLLTVFWGLLAIVF 396
Query: 188 IFIV-ERLGSVLQVVSFITAI 207
LGS+++ V+ I +
Sbjct: 397 ALFFAGSLGSLIEAVNKIGSY 417
Score = 64.5 bits (158), Expect = 2e-11
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 257 YNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQ 316
Y G +F L + ++P+F +L++ +AYEYLE RF K R++ S L++I
Sbjct: 64 YLDGMRFVQFYFGLPLAMIFLCITFVPIFYRLKVYTAYEYLERRFGLKTRLLTSFLFLIS 123
Query: 317 MVFYTSVAVFAPALALS 333
T V ++APA+ LS
Sbjct: 124 RGLATGVMIYAPAIILS 140
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 479
Score = 59.9 bits (146), Expect = 6e-10
Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 52/228 (22%)
Query: 4 CVCIFYASHGGMKAVILTDSFQAFV-LLSSLIVLMMMGQWLTPGGFSQIWEDS------- 55
V + Y GG++AV+ TD Q V + ++ L + L PG + QI +
Sbjct: 160 LVTLLYTYFGGIRAVVWTDVIQLVVYIGGAVAALAYLLGAL-PGDWLQIAAAAGKFHKFD 218
Query: 56 ----------------------------------------TSTNRIESLIALWVSAVGLI 75
+ N ++ AL S V +
Sbjct: 219 FSDLILGLTSPYTFWAAIIGGALLSMASHGTDQLMVQRLLAARNLRDAQKALIGSGVVVF 278
Query: 76 LIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAA 135
+ + +G +LY Y+ L+ + D++ P ++++ L G+ G +AGI AA
Sbjct: 279 PQFALFLLIGVLLYVYYQG-ASLSALGLGEPDEVFPYFIVHELP--AGLRGLLIAGILAA 335
Query: 136 SLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVI 183
++ T++SA+NSLA+ T+QD L ++ ++K +S+ L++++ V+
Sbjct: 336 AMSTLSSALNSLASSTVQDLYQPWLRRRLSDSKLLRLSRLLTLVWAVV 383
Score = 46.8 bits (112), Expect = 1e-05
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 263 FFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTS 322
F + + ++L + + + LP + + + SAYE L RF ++ AS +++ +
Sbjct: 69 FLQLALGYILGRIIVAFVLLPRYFRGEVVSAYELLGQRFGGGMQKTASVTFLVTRLLADG 128
Query: 323 VAVFAPALALSHAL 336
V ++A A+ +S L
Sbjct: 129 VRLYATAIPISLIL 142
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 52.5 bits (127), Expect = 1e-07
Identities = 40/243 (16%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMG-QWLTPGGFSQIWED--------- 54
+ I Y GG++AV TD Q ++L +I+L + GG S +
Sbjct: 158 IVILYTVFGGLRAVAWTDVIQGVLMLIGVILLAFFALSKVGGGGLSALAAALPALLLSLG 217
Query: 55 -------------------------------STSTNRIESLIALWVSAVGLILIYCINAY 83
+ + + L ++ + ++LI + A
Sbjct: 218 PGGGPGWGTILGLFLLGGFGVLANPQIVQRFLAAKDEKTARRGLLLAGLLILLIGFLAAL 277
Query: 84 MGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASA 143
+G + + + D LP + +L G+ G +AG+ AA + T S
Sbjct: 278 IGLAARALFPD-------LEGNPDLALPTLIQELL--PPGLAGLVLAGLLAAIMSTADSL 328
Query: 144 INSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSF 203
+ + + + +D ++ + + K + + +++ GV++ LL + +L + +
Sbjct: 329 LLAASTLFTRDIYKRLINPKASDKKLLRVGRIATVVVGVLALLLALFPPSIILLLSLAAG 388
Query: 204 ITA 206
+ A
Sbjct: 389 LLA 391
Score = 29.4 bits (67), Expect = 2.6
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 257 YNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSK-VRVMASALYII 315
Y +G I L + L + + P +L + + E L R+ SK VR++++ + II
Sbjct: 64 YTYGISAGWYVIGAALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILSAIIIII 123
Query: 316 QMVFYTSVAVFAPALALSHAL 336
++ Y + + + LS L
Sbjct: 124 FLIGYLAAQLIGGGIILSTLL 144
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 42.6 bits (101), Expect = 2e-04
Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 48/248 (19%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLM--------MMGQWLT--PGGFSQIWED 54
+ + Y+ GG+ AV++TD Q +L+++ I + G + P GF +
Sbjct: 163 ITLIYSVIGGLWAVVVTDVVQFVILMAASIAVAVLALNAVGGPGGLWSQLPEGFFDFFLS 222
Query: 55 STSTNRIESLIALWVSAVGLILIYCIN--------------------AYMGAILY----- 89
+L + A + A LY
Sbjct: 223 LDGFTGFGALFFFILWFGWYAGSASGGGWYDAQRYLSAKSEKAAKKAALLFAALYLVRPL 282
Query: 90 ----------SQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGT 139
Y +I + P + +L G+ G +AG+FAA++ T
Sbjct: 283 PWMLPALAALVLYPDLADPAAALI-DFEAAYPAMIKELLPA--GLLGLVLAGLFAATMST 339
Query: 140 VASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQ 199
V++ +N AA + D + E + + + ++L+G++S ++ + +G
Sbjct: 340 VSTHLNWGAAYLVNDIYKRFIKPDASEKELLRVGRLATVLFGLLSIVVALASDSIGGAFD 399
Query: 200 VVSFITAI 207
+V + A
Sbjct: 400 IVLALGAG 407
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 41.1 bits (97), Expect = 6e-04
Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 50/244 (20%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGF---------------S 49
+ Y GG++AV+ TD Q ++L +LIV+ ++ + GGF +
Sbjct: 165 IVALYTFLGGLRAVVWTDFIQGLIMLIALIVIPILV-LILFGGFGELFAVLASLAPLFLT 223
Query: 50 QIWEDSTSTNRIESLIALWVSAVG------------------------------LILIYC 79
++ + S I SLIA +G L
Sbjct: 224 HPFDGALSPIYIISLIAWGTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCL 283
Query: 80 INAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGT 139
+ A++ +L Y P + + + P +L + I G +A I AA + T
Sbjct: 284 LGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPP--WIAGLLLAAILAAVMST 341
Query: 140 VASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQ 199
+S + ++ +D L E + I + + ++ +++ LL + S+L
Sbjct: 342 ASSQLLVASSAITRDIYKRFLRKNASEKELVRIGRVVVLVIALLALLLALLPP--SSILG 399
Query: 200 VVSF 203
+VS
Sbjct: 400 LVSL 403
Score = 33.8 bits (78), Expect = 0.14
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 256 FYNHGSQFFLICISFVLVVPLTSRLYLPVFMKL----RLTSAYEYLEMRFDSK-VRVMAS 310
Y G I I ++ L L+ P +L T+ ++LE RF SK +R++++
Sbjct: 66 AYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSA 125
Query: 311 ALYIIQMVFYTSVAVFAPALALS 333
+ I+ + Y ++ + A L LS
Sbjct: 126 LIIIVFFIPYIALQLVAGGLLLS 148
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related
proteins; solute binding domain. Escherichia coli PutP
catalyzes the Na+-coupled uptake of proline with a
stoichiometry of 1:1. The putP gene is part of the put
operon; this operon in addition encodes a proline
dehydrogenase, allowing the use of proline as a source
of nitrogen and/or carbon. This subfamily also includes
the Bacillus subtilis Na+/proline cotransporter (OpuE)
which has an osmoprotective instead of catabolic role.
Expression of the opuE gene is under osmotic control and
different sigma factors contribute to its regulation; it
is also a putative CcpA-activated gene. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 464
Score = 39.0 bits (92), Expect = 0.003
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESL 64
V + Y GG AV TD FQ ++L +L++L ++ GG S + + + L
Sbjct: 162 VVVAYTFLGGFLAVSWTDFFQGLLMLLALVLLPIVA-LAALGGLSGLVTALAAID--PGL 218
Query: 65 IALWVSAVGLILIYCINAYMGAIL 88
++ + +GL + I + + L
Sbjct: 219 LSPFGGGLGLGGLLAIISLLAWGL 242
Score = 35.9 bits (84), Expect = 0.027
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 126 GFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISF 185
G +A I AA + T S + ++ +D L + + + +S+ ++ +I+
Sbjct: 318 GILLAAILAAIMSTADSQLLVCSSALTEDLYKAFLRKEASDKELVWVSRLAVLVIALIAL 377
Query: 186 LLIFIVERLGSVLQVVSF 203
++ SV +VSF
Sbjct: 378 IIALN--PPSSVFDLVSF 393
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 38.4 bits (90), Expect = 0.005
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 282 LPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALAL 332
+P + ++ S EYL++RF+ R + + + I + + + ++A AL L
Sbjct: 90 MPFYYGSKVRSVPEYLKLRFNESTRTLNAISFAIMTILMSGINLYALALVL 140
Score = 29.9 bits (68), Expect = 1.8
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 107 DQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDF 155
+Q LP + L G+ G + + AA + +A +++ V D
Sbjct: 309 NQALPYLMAKYLP--PGLLGLGLTALLAAFMSGMAGNVSAFNTVFTYDI 355
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia
coli YidK-like; solute binding domain. Uncharacterized
subfamily of the solute binding domain of the solute
carrier 5 (SLC5) transporter family (also called the
sodium/glucose cotransporter family or solute sodium
symporter family) that co-transports Na+ with sugars,
amino acids, inorganic ions or vitamins. One member of
the SLC5 family, human SGLT3, has been characterized as
a glucose sensor and not a transporter. This subfamily
includes the uncharacterized Escherichia coli YidK
protein, and belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 472
Score = 36.0 bits (84), Expect = 0.023
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 98 LTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLT 157
L + +D P V +VL K+ + GFF A +F A L + SA+NS A + D
Sbjct: 298 LYGDGLENADMAYPTLVADVLPKW--LVGFFAAVLFGAILSSFNSALNSAATLFSLDIYK 355
Query: 158 NVLAVQIPENKGAVISKYLSILYGVISFLL 187
++ + + + K I+ +IS ++
Sbjct: 356 PIINPNATDKQLVKVGKIFGIVLAIISMII 385
Score = 30.6 bits (70), Expect = 1.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 276 LTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVF 319
+ + ++LP ++K +T+ E+LE R+D R + S L+++ V
Sbjct: 80 ILALVFLPRYLKSGITTIPEFLEERYDKTTRRIVSILFLLGYVV 123
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline
cotransporter CHT and related proteins; solute-binding
domain. Na+/choline co-transport by CHT is Cl-
dependent. Human CHT (also called CHT1) is encoded by
the SLC5A7 gene, and is expressed in the central nervous
system. hCHT1-mediated choline uptake may be the
rate-limiting step in acetylcholine synthesis, and
essential for cholinergic transmission. Changes in this
choline uptake in cortical neurons may contribute to
Alzheimer's dementia. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 464
Score = 35.6 bits (83), Expect = 0.037
Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 56/194 (28%)
Query: 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLM-------------------------- 37
+ + Y GGM +V TD Q V+ L++L+
Sbjct: 155 AIVLIYTLFGGMWSVAYTDVVQLIVIFIGLLLLVPFVLTNPGGVDASAAAAGKLRFFPWL 214
Query: 38 ---------MMGQWLTPGGFSQIWED---------STSTNRIESLIALWVSAVGLILIYC 79
+ WLT G S +D S T + SL+A G +L
Sbjct: 215 GTKPSDWLIWIDAWLTLGLGSIPQQDVFQRVLSAKSEKTAQRLSLLA----GFGYLLFAI 270
Query: 80 INAYMGAILYSQYKTCDPLTKHIIHGSDQM-LPLYVLNVLGKYTGIPGFFVAGIFAASLG 138
+G S LT + + Q+ LP+ + + + + F+ + +A +
Sbjct: 271 PPLLIGLAAASIDP---DLTSYGLEDDAQLILPILLQYLTPLWVQV--LFLGALLSAIMS 325
Query: 139 TVASAINSLAAVTM 152
T SA+ LA ++
Sbjct: 326 TADSAL--LAPSSV 337
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter. This family
consists of the sodium/proline symporter (proline
permease) from a number of Gram-negative and
Gram-positive bacteria and from the archaeal genus
Methanosarcina. Using the related pantothenate permease
as an outgroup, candidate sequences from Bifidobacterium
longum and several from archaea are found to be outside
the clade defined by known proline permeases. These
sequences, scoring between 570 and -40, define the range
between trusted and noise cutoff scores [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 487
Score = 34.6 bits (80), Expect = 0.067
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVL---MMMGQWLTPGGFSQIWEDSTSTNR 60
+ + Y GG AV TD Q ++ +L+++ + GGF + + N
Sbjct: 165 LIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNL----GGFGETLSAVAAINP 220
Query: 61 IESLIALWVSAVGLI 75
+ S + +I
Sbjct: 221 HLLDMFKGASVIAII 235
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier 5
(SLC5) transporter family.
Length = 472
Score = 34.1 bits (79), Expect = 0.091
Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 42/219 (19%)
Query: 7 IFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTN------- 59
I Y + GG +AV LTD+ Q V++ VL+++G GG I +
Sbjct: 168 ILYTTIGGFRAVALTDAIQGIVMIIG-TVLLLVGVLAAGGGMEAIMATLAEIDPNLLTPF 226
Query: 60 -----RIESLIALWVSAVGLILIYCINAYMGAILYSQYK--------------------- 93
+++ WV VG +I + + Y K
Sbjct: 227 GPGFLSPPYILSFWVL-VGFGVIGLPQTAVRCMGYKDSKSMHRAMIIGTVVVGFLMLGMH 285
Query: 94 TCDPLTKHIIHG---SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAV 150
L + ++ D+++P L VL + G F+AG AA + TV S + ++
Sbjct: 286 LAGVLGRAVLPDLEVPDKVIPTLALKVL--PPWLAGLFLAGPLAAIMSTVDSQLILASSA 343
Query: 151 TMQDFLTN--VLAVQIPENKGAVISKYLSILYGVISFLL 187
++D N + E K IS ++I+ G++ FLL
Sbjct: 344 IVKDLYLNYKNKEKKTSEKKVKRISLIITIILGLLVFLL 382
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 484
Score = 32.9 bits (76), Expect = 0.26
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 126 GFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISF 185
AG FAA L TVA + + A+ D V+ E + +++ +++ GV++
Sbjct: 325 ALVAAGAFAAILATVAGLLLAAASALAHDLYAKVIRPGASEREELRVARIAAVVIGVVAI 384
Query: 186 LLIFIVERLGSVLQVVSFITAI 207
LL ++ +V +V+ AI
Sbjct: 385 LLA-LLAPPQNVAFLVALAFAI 405
Score = 30.2 bits (69), Expect = 1.6
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMM 39
+ + Y GGM+A Q +LL + ++ ++
Sbjct: 155 VLMLVYVVLGGMRATTWVQIIQYVLLLGAYLLPAIL 190
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 32.4 bits (75), Expect = 0.30
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 26 AFVLLSSLIVLMMMGQWLTPG-------GFSQIWEDSTSTNRIESLIALWVSAVGLILI 77
A LL+ L+VL G L FS E N + SL L + L L+
Sbjct: 36 AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALL 94
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional.
Length = 523
Score = 32.5 bits (75), Expect = 0.30
Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 281 YLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQ-MVFYTSVAVFAPALALS 333
+LP ++K +T+ ++LE R+D R + S L++I +V + + +++ ALAL+
Sbjct: 91 FLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALN 144
Score = 32.5 bits (75), Expect = 0.32
Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 42/219 (19%)
Query: 9 YASHGGMKAVILTDSFQAFVLL-SSLIV----LMMMGQWLTPGGFSQIWEDST----STN 59
YA GG+KAV ++D+ LL L+V L+ +G G Q+ S
Sbjct: 175 YAVFGGLKAVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIG 234
Query: 60 RIESLIALWVSAVGLILI----YCINAYM---------------GAILYSQYKTCDPLT- 99
+ GLIL+ +C N + GA+L + +K PL
Sbjct: 235 GATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAKNLAEGQKGALLAAFFKLLGPLIL 294
Query: 100 -----------KHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLA 148
+ +D P V +VL + GFF A +F A L T +NS +
Sbjct: 295 VLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVP--LVGFFAAVLFGAILSTFNGFLNSAS 352
Query: 149 AVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLL 187
+ D ++ E + + K + +IS ++
Sbjct: 353 TLFSLDIYKPIINPNASEKQLVKVGKKFGFVLAIISMIV 391
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family. Membership of this
family is supported by a significant blast score.
Length = 406
Score = 32.3 bits (74), Expect = 0.37
Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 54/250 (21%)
Query: 7 IFYASHGGMKAVILTDSFQAFVLLSSLIVLMMM----------------------GQWLT 44
Y GG AV TD+ QA ++L I+LM++ T
Sbjct: 132 AIYTFFGGFLAVSWTDTIQAVLMLFGTIILMIIVFHEVGGYSSAVEKYMTADPNGVDLYT 191
Query: 45 PGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINA--------------------YM 84
P G I D + + + L + + IL C+ A
Sbjct: 192 PDGL-HILRDPLTGLSLWPGLVLGTTGLPHILQRCLAAKDAKCIRCGVLILTPMFIIVMP 250
Query: 85 GAI---LYSQYKTCDPLTKHIIH---GSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLG 138
G I L++ + S+ P + + G+ G +A + AA +
Sbjct: 251 GMISRGLFAIALAGA-NPRACGTVVGCSNIAYPTLAVKLGP--PGLAGIMLAVMLAAIMS 307
Query: 139 TVASAINSLAAVTMQDFLTNVLAVQIPENKGAV-ISKYLSILYGVISFLLIFIVERLGSV 197
T+ S + S ++ D N+ K V S+ + ++ ++ LL ++G +
Sbjct: 308 TLTSQLLSSSSAFTHDLYKNIRRKASATEKELVGRSRIIVLVVISLAILLAVQPAQMG-I 366
Query: 198 LQVVSFITAI 207
+V A
Sbjct: 367 AFLVQLAFAG 376
>gnl|CDD|146167 pfam03386, ENOD93, Early nodulin 93 ENOD93 protein.
Length = 79
Score = 29.8 bits (67), Expect = 0.42
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 129 VAGIFAASLGTVASAINSLAAVTM 152
+AG AA++ TVASA+ +LA+V M
Sbjct: 15 IAGAKAAAVATVASAVPTLASVRM 38
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 31.9 bits (73), Expect = 0.45
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 YASHGGMKAVILTDSFQAFVLLSSLIVLMMMG 40
Y GG+ AVI TD+ Q +++ +LM +
Sbjct: 164 YTITGGLAAVIYTDTLQTVIMVIGAFILMGLA 195
Score = 29.2 bits (66), Expect = 3.9
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 280 LYLPVFMKLRLTSAYEYLEMRF-DSKVRVMASALYIIQMVFY-TSVAVFAPALALSHAL 336
+++PV++ + + EYL RF ++RV S L + +F S +FA A+ + AL
Sbjct: 88 IFVPVYIAAGVVTMPEYLRKRFGGQRIRVYLSVLSLFLYIFTKISADLFAGAIFIQQAL 146
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 32.0 bits (73), Expect = 0.47
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 106 SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIP 165
D ++P L VL G F+A AA + T+ S + ++ ++D NV
Sbjct: 302 VDLVIPTLALKVL--PPFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLYLNVRDKLKN 359
Query: 166 ENKGAVISKYLSILYGVISFLL 187
E K IS ++++G + +
Sbjct: 360 ERKIKRISMIATLIFGALLLIA 381
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6
and related proteins; solute-binding domain. Human
SGLT6 (also called KST1, SMIT2) is a chiro-inositol
transporter, which also transports myo-inositol. It is
encoded by the SLC5A11 gene. Xenopus Na1-glucose
cotransporter type 1 (SGLT-1)-like protein is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 602
Score = 31.7 bits (72), Expect = 0.52
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 280 LYLPVFMKLRLTSAYEYLEMRFDSK-VRVMASALYIIQMVFYT-SVAVFAPALALSHAL 336
L+LP+++ +T+ EYL+ RF K +++ + LY+ +F SV ++A AL + AL
Sbjct: 88 LFLPIYIAAGVTTMPEYLQKRFGGKRIQIFLAVLYLFIYIFTKISVDMYAGALFIQQAL 146
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and
related proteins; solute-binding domain. Human SMIT is
a high-affinity myo-inositol transporter, and is
expressed in brain, heart, kidney, and lung. Inhibition
of myo-inositol uptake, through down-regulation of SMIT,
may be a common mechanism of action of mood stabilizers,
including lithium, carbamazepine, and valproate. SMIT is
encoded by the SLC5A3 gene, which is a candidate gene
for pathogenesis of nervous system dysfunction in Down
syndrome (DS). The SNP, 21q22 near SLC5A3-MRPS6-KCNE2,
has been associated with coronary heart disease,
cardiovascular disease, and myocardial infarction. SMIT
may also be involved in the pathogeneisis of congenital
cataract. SMIT also plays roles in osteogenesis, bone
formation, and bone mineral density determination. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 600
Score = 30.5 bits (69), Expect = 1.5
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 13 GGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGF 48
GG+ AVI TD+ QAF+++ + LM++ ++ GG+
Sbjct: 168 GGLAAVIYTDTLQAFLMIIGALTLMIIS-FIEVGGY 202
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction
only].
Length = 571
Score = 30.6 bits (69), Expect = 1.5
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 259 HGSQFFLICISFVLVVPLT--SRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQ 316
+ ++ V+PL + +LP ++K +T+ ++LE RFD R++ S L++I
Sbjct: 69 YKGNMSVMAWEVTSVIPLIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLIA 128
Query: 317 MVF-YTSVAVFAPALAL 332
+ +++ ALAL
Sbjct: 129 YGVCFLPTVLYSGALAL 145
Score = 27.9 bits (62), Expect = 8.6
Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 45/238 (18%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVL-----LSSLIVLMMMGQWLTPGGFSQIW----EDS 55
I YA GG+KA+ ++D+ L L + L+ +G+ G QI E
Sbjct: 173 AGILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKL 232
Query: 56 TSTNRIESLIALWVSAVGLILI----YCINAYM---------------GAILYSQYKTCD 96
+ + + GL+L+ +C N + GA+L + +K D
Sbjct: 233 NAIGGPTDPVPWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLD 292
Query: 97 PL--------TKHI---IHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAIN 145
PL H+ + +D P V NVL + GFF A +F A L T +N
Sbjct: 293 PLVLVLPGLIAFHLYGDLPKADMAYPTLVNNVLP--VPLVGFFGAVLFGAILSTFNGFLN 350
Query: 146 SLAAVTMQDFLTNVLAVQIPENK----GAVISKYLSILYGVISFLLIFIVERLGSVLQ 199
S + + D ++ E + G +++I+ +I+ + + L S ++
Sbjct: 351 SASTLFSMDIYRRIIKQNAEEQELVTVGRKFGAFIAIVSVLIAPWIANAPQGLYSWMK 408
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter. Pantothenate
(vitamin B5) is a precursor of coenzyme A and is made
from aspartate and 2-oxoisovalerate in most bacteria
with completed genome sequences. However, some pathogens
must import pantothenate. This model describes PanF, a
sodium/pantothenate symporter, from a larger family of
Sodium/substrate symporters (pfam00474). Several species
that have this transporter appear to lack all enzymes of
pantothenate biosynthesis, namely Haemophilus
influenzae, Pasteurella multocida, Fusobacterium
nucleatum, and Borrelia burgdorferi [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A, Transport and binding proteins, Other].
Length = 471
Score = 30.5 bits (69), Expect = 1.5
Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 47/223 (21%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTN----- 59
+ Y + GG +AV LTD+ Q V+ + +L ++ GG +I E +
Sbjct: 167 SVLIYTTFGGFRAVALTDAIQGIVMFTGTTIL-LIAVIKAGGGVEKIMEKLKDIDPNLIT 225
Query: 60 --------RIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHG------ 105
+ + W+ L+ I I A+ YK + + +I G
Sbjct: 226 PFGGDGGLTKPFVASFWI----LVGIGVIGLPQTAVRCMSYKDSKAMHRAMIIGTIVVGI 281
Query: 106 ---------------------SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAI 144
D+++PL + VL + G F+A AA + TV S +
Sbjct: 282 IMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVL--PPILAGIFLAAPMAAIMSTVNSLL 339
Query: 145 NSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLL 187
++ ++D N + + E+K IS ++++ G++ +
Sbjct: 340 LQSSSTIIKDLYLNYIPKEAKESKIKKISMCITLIIGLLVIIA 382
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and
related proteins; solute-binding domain. Dur3 is the
yeast plasma membrane urea transporter. Saccharomyces
cerevisiae DUR3 also transports polyamine. The polyamine
uptake of S. cerevisiae DUR3 is activated upon its
phosphorylation by polyamine transport protein kinase 2
(PTK2). S. cerevisiae DUR3 also appears to play a role
in regulating the cellular boron concentration. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 493
Score = 30.2 bits (69), Expect = 1.7
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 6 CIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMG-QWLTPGGFSQIWE 53
+ Y GG++A LTD ++L L++ G S++++
Sbjct: 165 VLLYTLFGGLRATFLTDYIHTVIILIILLIFAFAVYTSSDIGSPSKVYD 213
>gnl|CDD|240349 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 640
Score = 30.0 bits (68), Expect = 2.2
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIES 63
C Y + G AV T +F + V VL ++ W F+Q E S S + S
Sbjct: 414 TDCGVYLNAGREVAVASTKAFTSQVT-----VLSLIALW-----FAQNKEYSCSNYKCSS 463
Query: 64 LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTG 123
LI ++ + Y+G L S + C + + + + M +LGK G
Sbjct: 464 LIN---------SLHRLPTYIGMTLKSCEEQCKRIAEKLK-NAKSMF------ILGKGLG 507
Query: 124 IP 125
P
Sbjct: 508 YP 509
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and
related proteins; solute-binding domain. Human SGLT4
(hSGLT4) has been reported to be a low-affinity glucose
transporter with unusual sugar selectivity: it
transports D-mannose but not galactose or
3-O-methyl-D-glucoside. It is encoded by the SLC5A9 gene
and is expressed in intestine, kidney, liver, brain,
lung, trachea, uterus, and pancreas. hSLGT4 is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5 )transporter
family.
Length = 605
Score = 29.5 bits (66), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMG 40
V Y GG+ AVI TD+ Q +++ VLM +G
Sbjct: 160 VTAVYTIAGGLTAVIYTDALQTVIMVIGAFVLMFIG 195
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and
related proteins; solute-binding domain. Human SGLT2
(hSGLT2) is a high-capacity, low-affinity glucose
transporter, that plays an important role in renal
glucose reabsorption. It is encoded by the SLC5A2 gene
and expressed almost exclusively in renal proximal
tubule cells. Mutations in hSGLT2 cause Familial Renal
Glucosuria (FRG), a rare autosomal defect in glucose
transport. hSGLT2 is a major drug target for regulating
blood glucose levels in diabetes. hSGLT2 is predicted to
have 14 membrane-spanning regions. This subgroup belongs
to the solute carrier 5 (SLC5) transporter family.
Length = 583
Score = 29.5 bits (66), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 4 CVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLM 37
+ + Y GG+ A++ TD+ Q FV++ VLM
Sbjct: 160 GITMIYTVTGGLAALMYTDTVQTFVIIGGACVLM 193
>gnl|CDD|225205 COG2323, COG2323, Predicted membrane protein [Function unknown].
Length = 224
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 178 ILYGVISFLLIFIVERLG--------SVLQVVSFITAIELLGNPSEFYNHGSQFFLICIS 229
+ VI +L++ ++ R+ ++ V IT + G+ ++ I+
Sbjct: 8 AIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIAGDAI--FDDDVSILPTIIA 65
Query: 230 FVLVVPL 236
+ + L
Sbjct: 66 ILTLALL 72
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction
only].
Length = 529
Score = 29.2 bits (66), Expect = 3.2
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 93 KTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTM 152
KT D I ++ L +G + GF AG FA +L T A + +A+
Sbjct: 314 KTGDANGDGIGGWTNMAAVLAA-PAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVS 372
Query: 153 QDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAI 207
D V+ E K +++ ++ GV++ LL + G+V +V+ A+
Sbjct: 373 HDLYAMVIKKGATEKKEVRVARIAVVILGVVAILLGILPP--GNVAFLVALAFAL 425
Score = 28.8 bits (65), Expect = 4.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFS 49
+ + Y GGMKA QA +L+ + +++ +M W G +
Sbjct: 164 LMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPN 208
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 29.1 bits (66), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 6 CIFYASHGGMKAVILTDSFQAFVLLSSLIVL 36
Y + GG +AV+LTD+ Q V+L ++L
Sbjct: 169 VALYTAFGGFRAVVLTDALQGIVMLVGTVIL 199
>gnl|CDD|238267 cd00480, malate_synt, Malate synthase catalyzes the Claisen
condensation of glyoxylate and acetyl-CoA to malyl-CoA ,
which hydrolyzes to malate and CoA. This reaction is
part of the glyoxylate cycle, which allows certain
organisms, like plants and fungi, to derive their carbon
requirements from two-carbon compounds, by bypassing the
two carboxylation steps of the citric acid cycle.
Length = 511
Score = 29.1 bits (66), Expect = 3.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 143 AINSLAAVTMQDF 155
A+NS AAV M DF
Sbjct: 80 ALNSGAAVFMADF 92
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose
cotransporter (vSGLT) and related proteins; solute
binding domain. vSGLT transports D-galactose,
D-glucose, and alpha-D-fucose, with a sugar specificity
in the order of D-galactose >D-fucose >D-glucose. It
transports one Na+ ion for each sugar molecule, and
appears to function as a monomer. vSGLT has 13
transmembrane helices (TMs): TM-1, an inverted topology
repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered
to conform to the solute carrier 6 family Aquifex
aeolicus LeuT). This subfamily belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 523
Score = 29.2 bits (66), Expect = 4.0
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 281 YLPVFMKLRLTSAYEYLEMRFDSKVR-VMA-SALYIIQMVFYTSVAVFAPALALS 333
+LP+F+K + + ++LE R++ +VR +MA L + V TSV ++ ALA+
Sbjct: 89 FLPIFLKNGIYTMPQFLEQRYNGRVRTIMAVFWLLLYVFVNLTSV-LYLGALAIE 142
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 28.7 bits (64), Expect = 5.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1 MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLM 37
++ + Y GG+ AVI TD+ Q ++L +LM
Sbjct: 157 ILLAITALYTVTGGLAAVIYTDTLQTIIMLVGSFILM 193
>gnl|CDD|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9,
TRAPP II complex subunit. This region is found at the N
terminal of Saccharomyces cerevisiae Trs120 protein.
Trs120 is a subunit of the multiprotein complex TRAPP
(transport particle protein) which functions in ER to
Golgi traffic. Trs120 is specific to the larger TRAPP
complex, TRAPP II, along with Trs65p and
Trs130p(TRAPPC10). It is suggested that Trs120p is
required for the stability of the Trs130p subunit,
suggesting that these two proteins might interact in
some way. It is likely that there is a complex function
for TRAPP II in multiple pathways.
Length = 1183
Score = 28.6 bits (63), Expect = 5.9
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 200 VVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTS 252
+ FITAIELL +F GS I ++ VL+ L S +P + + L+
Sbjct: 261 LQHFITAIELLRKVGDFLWLGSALEGISVALVLLHYLGSDYQIPQILSMILSV 313
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and
related proteins; solute-binding domain. Human SGLT5 is
a glucose transporter, which also transports galactose.
It is encoded by the SLC5A10 gene, and is exclusively
expressed in the renal cortex. This subgroup belongs to
the solute carrier 5 (SLC5) transporter family.
Length = 604
Score = 28.4 bits (63), Expect = 6.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWE 53
V Y GG+ AVI TD+ Q +++ ++L + + GG+S + E
Sbjct: 163 VTALYTIAGGLAAVIYTDALQTLIMVIGAVILTIKA-FNQIGGYSNLEE 210
>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain,
uncharacterized subfamily 14. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 311
Score = 27.8 bits (62), Expect = 8.1
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 114 VLNVLGKYTGIPGFFVAGIFAASLGTV-----ASAINSLAAVTMQDFLTNVLAVQIPENK 168
V++ L YTG+P AG GT+ AS S+ A T D+ L +P
Sbjct: 159 VIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYLFGYLPGGS 218
Query: 169 GAVIS 173
G V+S
Sbjct: 219 GDVVS 223
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.142 0.420
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,157,013
Number of extensions: 1695603
Number of successful extensions: 2997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2933
Number of HSP's successfully gapped: 274
Length of query: 336
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 239
Effective length of database: 6,635,264
Effective search space: 1585828096
Effective search space used: 1585828096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.4 bits)