RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15005
(336 letters)
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 79.4 bits (196), Expect = 1e-16
Identities = 38/265 (14%), Positives = 86/265 (32%), Gaps = 65/265 (24%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPG------GFSQIWEDS--- 55
+ Y+ +GG+ AV+ TD Q F L+ + M G G S++ + +
Sbjct: 172 FALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGH 231
Query: 56 --------------------------------------------TSTNRIESLIALWVSA 71
+ + E+ + +A
Sbjct: 232 FEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAA 291
Query: 72 VGLILIYCINAYMGAILYSQYK---------TCDPLTKHIIHGSDQMLPLYVLNVLGKYT 122
+++ + G Y +D+ P ++ L
Sbjct: 292 FLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYP-WLTQFL--PV 348
Query: 123 GIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGV 182
G+ G A + AA + ++AS +NS A + D ++ ++K + + +++ +
Sbjct: 349 GVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALI 408
Query: 183 ISFLLIFIVERLGSVLQVVSFITAI 207
I+ L+ ++ +G Q + T +
Sbjct: 409 IAALIAPMLGGIGQCFQYIQEYTGL 433
Score = 60.2 bits (146), Expect = 3e-10
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 257 YNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQ 316
Y+ G + + + + +LP+F++ + + E++E RF+ K++ + + +I
Sbjct: 78 YSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISL 137
Query: 317 MVF-YTSVAVFAPALALSHAL 336
+F + ++ LAL L
Sbjct: 138 YIFVNLTSVLYLGGLALETIL 158
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 74.4 bits (183), Expect = 7e-15
Identities = 38/265 (14%), Positives = 86/265 (32%), Gaps = 65/265 (24%)
Query: 5 VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPG------GFSQIWEDS--- 55
+ Y+ +GG+ AV+ TD Q F L+ + M G G S++ + +
Sbjct: 143 FALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGH 202
Query: 56 --------------------------------------------TSTNRIESLIALWVSA 71
+ + E+ + +A
Sbjct: 203 FEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAA 262
Query: 72 VGLILIYCINAYMGAILYSQYK---------TCDPLTKHIIHGSDQMLPLYVLNVLGKYT 122
+++ + G Y +D+ P ++ L
Sbjct: 263 FLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYP-WLTQFL--PV 319
Query: 123 GIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGV 182
G+ G A + AA + ++AS +NS A + D ++ ++K + + +++ +
Sbjct: 320 GVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALI 379
Query: 183 ISFLLIFIVERLGSVLQVVSFITAI 207
I+ L+ ++ +G Q + T +
Sbjct: 380 IACLIAPMLGGIGQAFQYIQEYTGL 404
Score = 59.0 bits (143), Expect = 8e-10
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 257 YNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQ 316
Y+ G + + + + +LP+F++ + + E++E RF+ K++ + + +I
Sbjct: 49 YSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISL 108
Query: 317 MVF-YTSVAVFAPALALSHAL 336
+F + ++ LAL L
Sbjct: 109 YIFVNLTSVLYLGGLALETIL 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 40/240 (16%), Positives = 70/240 (29%), Gaps = 70/240 (29%)
Query: 54 DSTSTNRIESLIALWVSA----VGLILIY----CINAYMGAILYSQYKTCDPLTKHIIHG 105
+ S AL+ + L+ I+ + Y L Y+T L +I
Sbjct: 134 KRPFDKKSNS--ALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKF 190
Query: 106 SDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIP 165
S + L ++ F G+ + ++L N P
Sbjct: 191 SAETL----SELIRTTLDAEKVFTQGL------------------NILEWLEN--PSNTP 226
Query: 166 ENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLG-NPSEFYNH--GSQ 222
+ YL L IS LI V+Q+ ++ +LLG P E ++ G+
Sbjct: 227 DK------DYL--LSIPISCPLIG-------VIQLAHYVVTAKLLGFTPGELRSYLKGA- 270
Query: 223 FFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQF----FLICISFVLVVPLTS 278
++ + S F+ + F I + P TS
Sbjct: 271 --TGHSQGLVTAVAIA----------ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Score = 34.3 bits (78), Expect = 0.064
Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 62/186 (33%)
Query: 83 YMGAILYSQYKTCDPLTKHIIHGSDQMLPLY-------VLN------------------V 117
Y A+++ T+ I ++ Y +L+
Sbjct: 1688 YS-AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 118 LGKYTGIP-GFFVAGIFAASLGTVASAINSLAAV-TMQDFLTNV------LAVQIPENKG 169
L IP AG SLG +A+ SLA V +++ + V + V +P ++
Sbjct: 1747 LKSKGLIPADATFAG---HSLGEY-AALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 170 AVISKY--LSILYGVISFL-----LIFIVERL----GSVLQVVSF------------ITA 206
S Y ++I G ++ L ++VER+ G ++++V++ + A
Sbjct: 1803 G-RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 207 IELLGN 212
++ + N
Sbjct: 1862 LDTVTN 1867
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.43
Identities = 10/60 (16%), Positives = 12/60 (20%), Gaps = 43/60 (71%)
Query: 276 LTSRL--YLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALS 333
L + L Y DS APALA+
Sbjct: 25 LQASLKLYAD------------------DS-----------------------APALAIK 43
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics,
PSI protein structure initiative; NMR {Agrobacterium
tumefaciens}
Length = 144
Score = 30.0 bits (67), Expect = 0.50
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 8 FYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTP-----GGFSQIWEDSTSTNRIE 62
FY + G+ V + +F FVL + + + + + P GG ++ + +++
Sbjct: 42 FYKALLGVDPVESSPTFSLFVLANGMKLGLWSRHTVEPKASVTGGGGELAFRVENDAQVD 101
Query: 63 SLIALWVSA 71
A W ++
Sbjct: 102 ETFAGWKAS 110
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Length = 148
Score = 27.8 bits (61), Expect = 3.5
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 8 FYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTP-----GGFSQIWEDSTSTNRIE 62
FY + + + + +F FV+ + L + + + + P GG ++ S ++
Sbjct: 23 FYKNLLDTQPIESSPTFAMFVMKTGLRLGLWAQEEIEPKAHQTGGGMELSFQVNSNEMVD 82
Query: 63 SLIALWVSA 71
+ W
Sbjct: 83 EIHRQWSDK 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.142 0.420
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,982,567
Number of extensions: 293012
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 19
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.9 bits)