RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15005
         (336 letters)



>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 458

 Score = 28.6 bits (62), Expect = 1.3
 Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 1/211 (0%)

Query: 120 KYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSIL 179
               +P F V      +    +      A + +++ LT+       + +   ++   +  
Sbjct: 28  AVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANAR 87

Query: 180 YGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSR 239
             V +++L  +             +  I     P   +       +  ++          
Sbjct: 88  REVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKE 147

Query: 240 LYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEM 299
             L     +      E     S   L  I   +     S   + +     L ++ E+ + 
Sbjct: 148 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN-VKLAATNALLNSLEFTKA 206

Query: 300 RFDSKVRVMASALYIIQMVFYTSVAVFAPAL 330
            FD +         + +        V   AL
Sbjct: 207 NFDKESERHFIMQVVCEATQCPDTRVRVAAL 237


>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
           clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 196

 Score = 26.2 bits (57), Expect = 4.5
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 34  IVLMMM---GQWLTPGGFSQIWEDSTSTNRIESL---IALWVSAVGLILIYCINAYMG 85
           ++LMMM   G+   PGGF    + S        L   +   ++ V +      ++ + 
Sbjct: 44  VLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVR 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,174,941
Number of extensions: 51601
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 7
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)