Query psy15007
Match_columns 68
No_of_seqs 150 out of 1034
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:03:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2349|consensus 99.4 4.8E-14 1E-18 106.9 0.0 53 15-68 8-60 (585)
2 PRK09395 actP acetate permease 99.4 4.6E-13 1E-17 99.7 4.2 57 9-68 28-84 (551)
3 PRK12488 acetate permease; Pro 99.3 1.3E-12 2.9E-17 97.4 4.6 57 9-68 26-82 (549)
4 PRK15419 proline:sodium sympor 99.3 1.4E-12 3.1E-17 96.0 4.6 53 13-68 3-55 (502)
5 PRK09442 panF sodium/panthothe 99.3 3.7E-12 8E-17 93.1 5.3 55 14-68 2-56 (483)
6 TIGR02121 Na_Pro_sym sodium/pr 99.2 8E-12 1.7E-16 91.7 4.3 50 16-68 2-51 (487)
7 TIGR02711 symport_actP cation/ 99.2 2E-11 4.4E-16 91.1 5.0 56 10-68 27-82 (549)
8 PRK10484 putative transporter; 99.2 2.2E-11 4.8E-16 90.1 4.5 52 16-68 2-53 (523)
9 TIGR02119 panF sodium/pantothe 99.1 4.9E-11 1.1E-15 86.8 4.7 54 15-68 1-55 (471)
10 TIGR03648 Na_symport_lg probab 99.1 4E-11 8.6E-16 89.3 1.1 46 18-68 2-47 (552)
11 COG0591 PutP Na+/proline sympo 98.9 8.8E-10 1.9E-14 81.6 4.1 52 14-68 2-53 (493)
12 COG4145 PanF Na+/panthothenate 98.3 2.1E-07 4.6E-12 68.9 1.4 50 19-68 5-54 (473)
13 COG4146 Predicted symporter [G 97.2 0.0004 8.7E-09 52.2 3.7 48 20-67 5-54 (571)
14 COG4147 DhlC Predicted symport 96.3 0.0012 2.7E-08 50.2 0.5 48 18-68 9-56 (529)
15 KOG3761|consensus 93.5 0.037 8E-07 41.5 1.3 50 18-67 7-64 (591)
16 PF12273 RCR: Chitin synthesis 87.8 0.36 7.8E-06 30.1 1.6 22 17-38 4-25 (130)
17 PF05545 FixQ: Cbb3-type cytoc 78.3 3.4 7.4E-05 21.6 2.8 23 16-38 10-32 (49)
18 PF15102 TMEM154: TMEM154 prot 66.2 6.6 0.00014 25.7 2.5 15 22-36 68-82 (146)
19 PF01102 Glycophorin_A: Glycop 62.2 12 0.00026 23.7 3.1 21 16-36 69-89 (122)
20 cd01324 cbb3_Oxidase_CcoQ Cyto 61.2 15 0.00032 19.5 2.9 23 16-38 11-33 (48)
21 COG3115 ZipA Cell division pro 59.3 13 0.00028 27.2 3.2 27 12-38 3-29 (324)
22 PRK01741 cell division protein 54.2 11 0.00025 27.6 2.2 26 13-38 3-28 (332)
23 PF14283 DUF4366: Domain of un 51.7 9.5 0.0002 26.2 1.4 13 30-42 175-187 (218)
24 PF13295 DUF4077: Domain of un 51.4 9.2 0.0002 24.9 1.3 40 14-65 20-59 (175)
25 PF15330 SIT: SHP2-interacting 47.2 21 0.00046 21.9 2.4 25 18-42 4-28 (107)
26 PF14991 MLANA: Protein melan- 46.8 6.5 0.00014 24.9 0.0 20 19-38 30-49 (118)
27 PF03601 Cons_hypoth698: Conse 46.3 64 0.0014 23.0 5.0 33 29-65 221-253 (305)
28 PHA00726 hypothetical protein 45.7 32 0.00069 20.8 2.9 17 50-66 38-54 (89)
29 PF13493 DUF4118: Domain of un 44.7 40 0.00086 19.4 3.2 26 13-38 77-102 (105)
30 COG2855 Predicted membrane pro 43.9 38 0.00082 24.9 3.6 35 29-66 230-264 (334)
31 TIGR01478 STEVOR variant surfa 42.8 11 0.00025 27.2 0.7 32 11-42 256-287 (295)
32 TIGR02205 septum_zipA cell div 42.7 23 0.0005 25.3 2.3 11 28-38 17-27 (284)
33 PTZ00370 STEVOR; Provisional 42.5 10 0.00022 27.5 0.4 27 11-37 252-278 (296)
34 PF08693 SKG6: Transmembrane a 41.6 33 0.00072 17.8 2.2 10 29-38 28-37 (40)
35 TIGR02736 cbb3_Q_epsi cytochro 41.5 31 0.00068 19.2 2.2 14 25-38 10-23 (56)
36 PF01299 Lamp: Lysosome-associ 39.9 56 0.0012 22.9 3.9 14 24-37 283-296 (306)
37 PF07010 Endomucin: Endomucin; 36.6 56 0.0012 23.2 3.3 26 14-39 191-216 (259)
38 PF12670 DUF3792: Protein of u 35.7 46 0.001 20.2 2.6 25 14-38 37-61 (116)
39 PF02060 ISK_Channel: Slow vol 35.7 22 0.00047 22.9 1.1 19 18-36 46-64 (129)
40 PRK04561 tatA twin arginine tr 34.3 55 0.0012 19.2 2.6 19 11-29 2-20 (75)
41 PF05393 Hum_adeno_E3A: Human 34.1 31 0.00068 21.0 1.6 23 15-37 32-54 (94)
42 PRK03427 cell division protein 33.8 57 0.0012 24.0 3.2 18 22-39 14-31 (333)
43 COG3763 Uncharacterized protei 33.8 61 0.0013 18.8 2.7 20 18-37 7-26 (71)
44 TIGR03062 pip_yhgE_Cterm YhgE/ 33.7 62 0.0013 20.7 3.1 23 15-37 182-204 (208)
45 PF11022 DUF2611: Protein of u 33.5 26 0.00056 20.2 1.1 21 47-67 4-24 (71)
46 PF05753 TRAP_beta: Translocon 33.3 53 0.0012 21.8 2.8 26 11-36 144-169 (181)
47 PRK10574 putative major pilin 33.3 79 0.0017 20.3 3.5 25 9-33 3-27 (146)
48 PF05814 DUF843: Baculovirus p 33.1 78 0.0017 18.9 3.2 25 12-36 22-46 (83)
49 PRK14762 membrane protein; Pro 33.0 62 0.0013 15.3 2.5 21 14-34 2-23 (27)
50 PRK02958 tatA twin arginine tr 32.3 62 0.0013 18.8 2.6 19 11-29 2-20 (73)
51 PF01708 Gemini_mov: Geminivir 30.8 1.3E+02 0.0027 18.3 3.8 18 37-54 66-83 (91)
52 PF06667 PspB: Phage shock pro 30.6 60 0.0013 18.8 2.4 13 22-34 11-23 (75)
53 PF14221 DUF4330: Domain of un 30.5 26 0.00057 22.9 0.9 23 11-33 12-34 (168)
54 TIGR03867 MprA_tail MprA prote 30.2 35 0.00076 16.3 1.1 16 51-66 2-17 (27)
55 COG3295 Uncharacterized protei 30.1 53 0.0011 22.8 2.4 38 16-65 166-203 (213)
56 PF10260 SAYSvFN: Uncharacteri 30.1 77 0.0017 18.2 2.7 26 23-48 21-47 (71)
57 COG1826 TatA Sec-independent p 30.0 60 0.0013 19.1 2.4 18 12-29 3-20 (94)
58 PRK14780 lipoprotein signal pe 30.0 75 0.0016 22.7 3.2 27 11-37 198-226 (263)
59 PRK00720 tatA twin arginine tr 29.8 73 0.0016 18.7 2.6 20 11-30 2-21 (78)
60 PF12955 DUF3844: Domain of un 29.7 1.2E+02 0.0026 18.7 3.7 26 11-36 66-91 (103)
61 PF11982 DUF3483: Domain of un 29.5 87 0.0019 21.9 3.3 47 14-64 92-140 (224)
62 PF01299 Lamp: Lysosome-associ 29.1 80 0.0017 22.1 3.2 34 14-48 270-303 (306)
63 PRK00220 putative glycerol-3-p 28.7 82 0.0018 21.2 3.1 35 19-56 8-42 (198)
64 PRK01844 hypothetical protein; 28.6 83 0.0018 18.3 2.7 19 19-37 8-26 (72)
65 TIGR00023 acyl-phosphate glyce 27.5 90 0.002 21.0 3.1 36 18-56 7-42 (196)
66 TIGR01433 CyoA cytochrome o ub 26.7 1.1E+02 0.0023 20.9 3.4 7 50-56 71-77 (226)
67 PF09451 ATG27: Autophagy-rela 26.2 1E+02 0.0023 21.3 3.4 29 11-39 198-228 (268)
68 PF07069 PRRSV_2b: Porcine rep 26.0 1.1E+02 0.0023 17.6 2.8 21 14-34 25-45 (73)
69 PF05454 DAG1: Dystroglycan (D 25.9 23 0.00049 25.5 0.0 12 30-41 164-175 (290)
70 PRK14473 F0F1 ATP synthase sub 25.3 1.2E+02 0.0025 19.2 3.2 26 9-34 2-28 (164)
71 PF11014 DUF2852: Protein of u 25.2 44 0.00096 21.0 1.2 10 57-66 22-31 (115)
72 PF13268 DUF4059: Protein of u 25.1 97 0.0021 18.0 2.5 7 40-46 35-41 (72)
73 TIGR01167 LPXTG_anchor LPXTG-m 25.1 87 0.0019 14.5 3.2 7 30-36 23-29 (34)
74 PRK10845 colicin V production 24.6 1.2E+02 0.0026 19.5 3.2 21 13-34 1-21 (162)
75 MTH00260 ATP8 ATP synthase F0 24.6 1.3E+02 0.0028 16.2 3.1 26 11-36 2-30 (53)
76 PF11346 DUF3149: Protein of u 24.2 1.2E+02 0.0025 15.8 2.5 22 16-37 14-35 (42)
77 PF11770 GAPT: GRB2-binding ad 23.7 69 0.0015 21.3 2.0 22 17-38 13-34 (158)
78 PF04971 Lysis_S: Lysis protei 23.2 1.1E+02 0.0025 17.5 2.6 16 28-43 48-63 (68)
79 PRK00442 tatA twin arginine tr 22.5 1.1E+02 0.0023 18.6 2.5 19 11-29 2-20 (92)
80 PRK14794 lipoprotein signal pe 22.5 1.5E+02 0.0032 18.8 3.3 19 10-28 99-117 (136)
81 COG4682 Predicted membrane pro 22.5 83 0.0018 20.2 2.1 36 12-51 11-46 (128)
82 PF10095 DUF2333: Uncharacteri 22.4 71 0.0015 23.6 2.0 24 15-38 14-37 (336)
83 PF07019 Rab5ip: Rab5-interact 22.2 43 0.00093 19.0 0.7 34 17-52 25-58 (81)
84 PF10661 EssA: WXG100 protein 22.2 83 0.0018 20.2 2.1 15 23-37 126-140 (145)
85 PF03672 UPF0154: Uncharacteri 22.2 64 0.0014 18.3 1.4 16 22-37 4-19 (64)
86 MTH00158 ATP8 ATP synthase F0 22.1 1.1E+02 0.0024 14.6 3.1 19 11-29 2-20 (32)
87 PF00003 7tm_3: 7 transmembran 22.0 1.1E+02 0.0025 19.8 2.8 29 13-41 146-174 (238)
88 PF11137 DUF2909: Protein of u 21.9 1.6E+02 0.0035 16.5 3.0 22 19-40 6-27 (63)
89 PRK15066 inner membrane transp 21.6 1.4E+02 0.003 20.0 3.2 23 15-37 228-250 (257)
90 PRK14857 tatA twin arginine tr 21.5 1.1E+02 0.0025 18.2 2.5 22 8-29 1-22 (90)
91 PRK11677 hypothetical protein; 21.4 1.1E+02 0.0024 19.5 2.6 21 18-38 3-23 (134)
92 PF09973 DUF2208: Predicted me 21.2 1.3E+02 0.0028 21.0 3.0 21 18-38 26-46 (233)
93 COG4708 Predicted membrane pro 21.0 59 0.0013 21.7 1.2 36 12-52 69-104 (169)
94 PRK04335 cell division protein 20.9 1.1E+02 0.0023 22.4 2.6 16 23-38 14-29 (313)
95 PRK14393 membrane protein; Pro 20.7 1.3E+02 0.0029 20.2 2.9 34 19-56 7-40 (194)
96 PRK10927 essential cell divisi 20.7 1.1E+02 0.0023 22.6 2.6 21 18-38 36-56 (319)
97 PF14316 DUF4381: Domain of un 20.5 83 0.0018 19.7 1.8 15 21-35 26-40 (146)
98 KOG2348|consensus 20.1 65 0.0014 25.5 1.5 28 40-67 38-65 (667)
No 1
>KOG2349|consensus
Probab=99.39 E-value=4.8e-14 Score=106.87 Aligned_cols=53 Identities=36% Similarity=0.593 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
+.||.|+++|++++.+||+|+.++++++ +.+|||+|||+|+|||+|+|++|||
T Consensus 8 ~~d~~v~~l~~~~~~~ig~~~~~~~~~~-t~~~y~l~gr~m~~~Pv~~SL~aS~ 60 (585)
T KOG2349|consen 8 AADYSVFVLYFLLVMAIGLWFGFRTKRG-TVEEYFLGGRSMVWLPVAASLFASN 60 (585)
T ss_pred ccchhHHHHHHHHhhhheeeEEEEcCCc-cHhhhhhcCCcceEEEeehhhhhhh
Confidence 8999999999999999999999886555 9999999999999999999999996
No 2
>PRK09395 actP acetate permease; Provisional
Probab=99.37 E-value=4.6e-13 Score=99.68 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 9 LDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 9 ~~~~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
|+..+++.|+.++++|+++++++|+|.+ ||+++.+|||+|||++|||++++|++||+
T Consensus 28 ~~~~~~~~~~~i~~~y~~~~l~iG~~~~---r~~~s~~df~~agr~l~~~~~~~si~At~ 84 (551)
T PRK09395 28 EKQPTNWQAIIMFLIFVVFTLGITYWAA---KRTRSASDFYTAGGGITGFQNGLAIAGDY 84 (551)
T ss_pred hhcCCcHHHHHHHHHHHHHHHHHHHHhh---cccCCHHHHhhcCCCCcHHHHHHHHHHHH
Confidence 5567889999999999999999999987 66789999999999999999999999974
No 3
>PRK12488 acetate permease; Provisional
Probab=99.33 E-value=1.3e-12 Score=97.39 Aligned_cols=57 Identities=9% Similarity=0.230 Sum_probs=51.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 9 LDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 9 ~~~~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
++..+++.|+.++++|+++++++|+|.+ ||+++.+|||+|||++|||++++|+.||+
T Consensus 26 ~~~~~~~~~i~i~~~y~~~~l~ig~~~~---r~~~s~~df~laGR~l~~~~~~~si~at~ 82 (549)
T PRK12488 26 QRQPLNWTAIGMFMVFVLFTLGITRWAA---RRTRSASDFYTAGGGLTGMQNGLAIAGDM 82 (549)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHhhee---eccCChHHHeeeCCCCcHHHHHHHHHHHH
Confidence 3456788999999999999999999987 56789999999999999999999999874
No 4
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=99.33 E-value=1.4e-12 Score=95.97 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
.+..+++++++|+++++++|+|.+ ||+++.+|||+|||++|||++++|+.||+
T Consensus 3 ~~~~~~~~~~~y~~~~l~iG~~~~---r~~~s~~dy~lagr~l~~~~~~~s~~At~ 55 (502)
T PRK15419 3 ISTPMLVTFCVYIFGMILIGFIAW---RSTKNFDDYILGGRSLGPFVTALSAGASD 55 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh---hcCCChhHheeeCCCccHHHHHHHHHHHH
Confidence 567889999999999999999987 56788999999999999999999999974
No 5
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=99.30 E-value=3.7e-12 Score=93.12 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
++.+++++++|+++++++|+|.+++.|+.++.+||++|||++|||++++|+.||+
T Consensus 2 ~~~~~~~i~~y~~~~~~ig~~~~r~~~~~~~~~dy~~agr~~~~~~~~~s~~at~ 56 (483)
T PRK09442 2 NLEVILPLVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATY 56 (483)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcccCCCcccceeeeCCCccHHHHHHHHHHHH
Confidence 6778999999999999999998855444445799999999999999999999874
No 6
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=99.24 E-value=8e-12 Score=91.65 Aligned_cols=50 Identities=34% Similarity=0.500 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
++++++++|+++++++|+|.+ ||+++.||||+|||++|||++++|+.||+
T Consensus 2 ~~~~~~~~y~~~~l~iG~~~~---r~~~s~~df~lagr~~~~~~~~~s~~At~ 51 (487)
T TIGR02121 2 EILITFGVYLIIMLLIGFYAY---KKTTNLSDYVLGGRSLGPFVTALSAGASD 51 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cccCchHHHeeeCCcccHHHHHHHHHHHH
Confidence 678899999999999999987 56778999999999999999999999873
No 7
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=99.20 E-value=2e-11 Score=91.08 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 10 DNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 10 ~~~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
+..+++..++++++|+++++.+|+|.+ ||+++.+|||+|||++|||++++|+.||+
T Consensus 27 ~~~~~~~~~~~~~~y~~~~l~ig~~~~---r~~~~~~dy~laGr~~~~~~~g~si~at~ 82 (549)
T TIGR02711 27 RQPLNIQAIIMFLLFVGFTLYITYWAS---KKTRSRSDYYTAGGNITGFQNGLAIAGDY 82 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhh---cccCCchhheeeCCCccHHHHHHHHHHHH
Confidence 344577888889999999999999987 66788999999999999999999999874
No 8
>PRK10484 putative transporter; Provisional
Probab=99.18 E-value=2.2e-11 Score=90.10 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
+|++++++|++++.++|++.++| +++++.||||+|||++|||++++|+.||+
T Consensus 2 ~~i~~~~~~~~~~~~ig~~~~r~-~~~~s~~dyflagR~l~~~~~~~sl~AT~ 53 (523)
T PRK10484 2 LTILSFLGFTLLVAVISWWKTRK-TDTSSSDGYFLAGRSLTGPVIAGSLLLTN 53 (523)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcc-CCCCCchhheecCCCCchHHHHHHHHHHH
Confidence 68999999999999999997732 23478999999999999999999999974
No 9
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.14 E-value=4.9e-11 Score=86.78 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccCCcC-CccceeecCCCCCHHHHHhhhhhcC
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVGMCGEKQT-TSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~~~~~~~~-s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
+.|++++++|+++++++|+|.++|.|+.+ +.|||++|||++|||++++|++||+
T Consensus 1 ~~~~~~~~~y~~~~~~ig~~~~r~~~~~~~~~~dy~~agr~l~~~~~~~s~~at~ 55 (471)
T TIGR02119 1 WEVVIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATY 55 (471)
T ss_pred CchHHHHHHHHHHHHHHHHHHheeccCCCCCccceeEeCCcccHHHHHHHHHHHH
Confidence 46899999999999999999985433222 3579999999999999999999984
No 10
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=99.06 E-value=4e-11 Score=89.33 Aligned_cols=46 Identities=13% Similarity=0.315 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
|+++++|+++++++|+|.+ +++.+|||+|||++|||++++|++||+
T Consensus 2 ~~i~~~y~~~~l~iG~~~~-----~~s~~dy~laGr~l~~~~~~~s~~At~ 47 (552)
T TIGR03648 2 YLFVGATFALYIGIGIWSR-----AGSTSEFYVAGRGVPPVANGMATAADW 47 (552)
T ss_pred eEEehHHHHHHHHHHHhee-----cCchHHHeeeCCCCchHHHHHHHHHHH
Confidence 5688999999999999962 458999999999999999999999974
No 11
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.94 E-value=8.8e-10 Score=81.63 Aligned_cols=52 Identities=33% Similarity=0.526 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
...|++++.+|++.++.+|+|.+ ||+++.|||++|||++++|+.++|..||+
T Consensus 2 ~~~~~ii~~iyli~~~~ig~~a~---~~~~~~~dy~~~gR~lg~~v~~ls~~as~ 53 (493)
T COG0591 2 MLILLIIFLIYLILMLLIGLYAY---RKTKSLEDYFLGGRSLGPFVYALSAAASD 53 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh---cccCchHHHhccCCcCChHHHHHHHHHHH
Confidence 35789999999999999999998 66679999999999999999999999874
No 12
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=98.31 E-value=2.1e-07 Score=68.93 Aligned_cols=50 Identities=26% Similarity=0.437 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 19 IVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 19 ~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
+.++.|++++.++++|..+|++|.+-..|||+|+|+|+..+++++..|||
T Consensus 5 ~pli~YL~~v~~i~iy~~~k~~k~~fLneYylgnRsmgg~VlAmt~~aTY 54 (473)
T COG4145 5 LPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATY 54 (473)
T ss_pred hhHHHHHHHHHHHHHHHHhhhccccchHHHHhccCcccceehhhHHHHHH
Confidence 56889999999999998776666777899999999999999999999986
No 13
>COG4146 Predicted symporter [General function prediction only]
Probab=97.22 E-value=0.0004 Score=52.22 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhheeccCC--cCCccceeecCCCCCHHHHHhhhhhc
Q psy15007 20 VLLTMLVVSCAIGFFVGMCGEK--QTTSDDFLLGSSSMGTLPMALSLAAS 67 (68)
Q Consensus 20 v~~~yl~~~~~iG~~~~~~~~~--~~s~~dyflggr~m~~~~vglSl~AT 67 (68)
.++.|+.....+.+...+|.|+ -+|++.||+|||+++..++|-|++-|
T Consensus 5 ~i~sFl~~t~~Va~isW~Ktr~~Dl~ss~GYFLaGR~Lsg~VI~~SlvLT 54 (571)
T COG4146 5 TILSFLGVTLLVAIISWWKTRGTDLSSSKGYFLAGRSLSGLVIACSLVLT 54 (571)
T ss_pred HHHHHHHHHHHHHheeeeeccCCccccccceEeccCcccchhheehhhhh
Confidence 3444444444444333333233 45789999999999999999998754
No 14
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.31 E-value=0.0012 Score=50.21 Aligned_cols=48 Identities=8% Similarity=0.332 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
..++++|+...+.+++|.+ +|.++..||+.|||++|...=|+.+.+.|
T Consensus 9 i~i~~l~v~~~l~i~~~~~---~R~~s~tdyYvAG~~i~~fqNGlAiagdy 56 (529)
T COG4147 9 IGIFVLFVLITLYITYWAS---KRTRSATDYYVAGGRITGFQNGLAIAGDY 56 (529)
T ss_pred EehhHHHHHHHHhheeeee---cccccccceeecCCcccccccceehhccc
Confidence 4567788888888998887 77899999999999999988777765543
No 15
>KOG3761|consensus
Probab=93.53 E-value=0.037 Score=41.54 Aligned_cols=50 Identities=12% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhheeccCCcCC--------ccceeecCCCCCHHHHHhhhhhc
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMCGEKQTT--------SDDFLLGSSSMGTLPMALSLAAS 67 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~~~~~~s--------~~dyflggr~m~~~~vglSl~AT 67 (68)
.+.+++|.++++.+|+|..||.|..++ +|+-.+|||+++-.+=++.+-||
T Consensus 7 iiaii~fyllillvgiwa~~kskns~~~e~~agaate~iil~grdig~lvg~ftmtat 64 (591)
T KOG3761|consen 7 IIAIIFFYLLILLVGIWAARKSKNSGEAEEEAGAATEAIILAGRDIGLLVGGFTMTAT 64 (591)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCccchhhhccccchhheeccccceeeeeeEEEEEE
Confidence 344455556667899999876543332 36789999999877766666554
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=87.80 E-value=0.36 Score=30.11 Aligned_cols=22 Identities=0% Similarity=0.070 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhheec
Q psy15007 17 DYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 17 D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
=++||++.++++++++.+.++|
T Consensus 4 l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555544
No 17
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=78.31 E-value=3.4 Score=21.65 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhheec
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
.+.+..++++++.+++-+|..++
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~~~~ 32 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWAYRP 32 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 45555666666666777776543
No 18
>PF15102 TMEM154: TMEM154 protein family
Probab=66.20 E-value=6.6 Score=25.73 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhhe
Q psy15007 22 LTMLVVSCAIGFFVG 36 (68)
Q Consensus 22 ~~yl~~~~~iG~~~~ 36 (68)
++.+++++++++...
T Consensus 68 LvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYY 82 (146)
T ss_pred HHHHHHHHHHheeEE
Confidence 333333334444433
No 19
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.15 E-value=12 Score=23.67 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhe
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVG 36 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~ 36 (68)
+-+.|++..++.+++|-++.+
T Consensus 69 Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333433333
No 20
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=61.17 E-value=15 Score=19.46 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhheec
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
.|...++.++++.+++-+|..+.
T Consensus 11 a~~~~l~~~~~~Figiv~wa~~p 33 (48)
T cd01324 11 ADSWGLLYLALFFLGVVVWAFRP 33 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 46666666666666666675543
No 21
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=59.26 E-value=13 Score=27.21 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhheec
Q psy15007 12 HFTIPDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 12 ~~~~~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
.++.+=++|-++-++.+++-|+|.+||
T Consensus 3 dLr~ILIIvG~IAIiaLLvhGlWtsRk 29 (324)
T COG3115 3 DLRLILIIVGAIAIIALLVHGLWTSRK 29 (324)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhcch
Confidence 455555556666777788899998754
No 22
>PRK01741 cell division protein ZipA; Provisional
Probab=54.24 E-value=11 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhheec
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
++++=++.=++-++++++-|+|..||
T Consensus 3 Ln~iliILg~lal~~Lv~hgiWsnRr 28 (332)
T PRK01741 3 LNTILIILGILALVALVAHGIWSNRR 28 (332)
T ss_pred ceehHHHHHHHHHHHHHHhhhhhhhh
Confidence 44443333344555667899998843
No 23
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=51.72 E-value=9.5 Score=26.24 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=5.5
Q ss_pred HHHHhheeccCCc
Q psy15007 30 AIGFFVGMCGEKQ 42 (68)
Q Consensus 30 ~iG~~~~~~~~~~ 42 (68)
+.++|+..+++|+
T Consensus 175 Ga~yYfK~~K~K~ 187 (218)
T PF14283_consen 175 GAYYYFKFYKPKQ 187 (218)
T ss_pred ceEEEEEEecccc
Confidence 3444444444443
No 24
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=51.45 E-value=9.2 Score=24.87 Aligned_cols=40 Identities=13% Similarity=0.350 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhh
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~ 65 (68)
+.+-++.+..+++.++++|.|- |..-.|.+..|+.|+|.+
T Consensus 20 hlllfiticsfflgiiaigyyg------------yifteraiafwvcgisvv 59 (175)
T PF13295_consen 20 HLLLFITICSFFLGIIAIGYYG------------YIFTERAIAFWVCGISVV 59 (175)
T ss_pred cEeeHHHHHHHHHHHHHHhhhh------------eeehhHHHHHHhhchhhh
Confidence 3445667788899999999883 666678999999999875
No 25
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=47.18 E-value=21 Score=21.93 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhheeccCCc
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMCGEKQ 42 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~~~~~ 42 (68)
.+++++.|+++++..+...+.+||+
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666666666555544433333
No 26
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=46.75 E-value=6.5 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHhheec
Q psy15007 19 IVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 19 ~v~~~yl~~~~~iG~~~~~~ 38 (68)
.++++-|.+++.+|-|+.+|
T Consensus 30 GiL~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 30 GILIVILGILLLIGCWYCKR 49 (118)
T ss_dssp S-------------------
T ss_pred eeHHHHHHHHHHHhheeeee
Confidence 35566677778899998754
No 27
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=46.30 E-value=64 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=18.3
Q ss_pred HHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhh
Q psy15007 29 CAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65 (68)
Q Consensus 29 ~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~ 65 (68)
+.++++..++.++++..+. ....||+++++=.+
T Consensus 221 ~~l~~~~~~~~~~~~~~~~----~~~~P~FvlgFl~~ 253 (305)
T PF03601_consen 221 LVLALFWARRQEKSSGKSK----KVSFPWFVLGFLAA 253 (305)
T ss_pred HHHHHHHHhhccccccccC----ccCcCHHHHHHHHH
Confidence 3456666543333322222 45799999986443
No 28
>PHA00726 hypothetical protein
Probab=45.75 E-value=32 Score=20.78 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=13.1
Q ss_pred ecCCCCCHHHHHhhhhh
Q psy15007 50 LGSSSMGTLPMALSLAA 66 (68)
Q Consensus 50 lggr~m~~~~vglSl~A 66 (68)
+-.|.++|+.++-|+.|
T Consensus 38 ~~~r~iGyYlVissv~a 54 (89)
T PHA00726 38 LNHRSIGYYLVISSVLA 54 (89)
T ss_pred CCCcceeeeeHHHHHHH
Confidence 34589999999888765
No 29
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=44.72 E-value=40 Score=19.37 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhheec
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
.++-|+.-+++|+++-+.+|....+.
T Consensus 77 ~~~~~~~~~~~~l~va~v~g~l~~~~ 102 (105)
T PF13493_consen 77 YDPQDWITFAVFLVVALVTGYLADRY 102 (105)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999987643
No 30
>COG2855 Predicted membrane protein [Function unknown]
Probab=43.85 E-value=38 Score=24.95 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=21.2
Q ss_pred HHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhh
Q psy15007 29 CAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAA 66 (68)
Q Consensus 29 ~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~A 66 (68)
+.++++.+++++..++.+. ....+||+++++=.+|
T Consensus 230 l~ls~~~~~~~~~~~~~~~---~~~~iPwFi~gFl~~a 264 (334)
T COG2855 230 LILSLILRRQSGAGSGSKG---LKITIPWFILGFLLVA 264 (334)
T ss_pred HHHHHHHhhccccccCCCC---CCCCCCHHHHHHHHHH
Confidence 4466776643222223333 4678999999987665
No 31
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=42.79 E-value=11 Score=27.23 Aligned_cols=32 Identities=9% Similarity=0.213 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhheeccCCc
Q psy15007 11 NHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQ 42 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~ 42 (68)
..|.+.-.+.+++.++.++.|=+|.+..+||+
T Consensus 256 aaF~Pcgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 256 STFLPYGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555544444444545544333333
No 32
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=42.72 E-value=23 Score=25.32 Aligned_cols=11 Identities=9% Similarity=0.003 Sum_probs=8.0
Q ss_pred HHHHHHhheec
Q psy15007 28 SCAIGFFVGMC 38 (68)
Q Consensus 28 ~~~iG~~~~~~ 38 (68)
+++=|+|.+|+
T Consensus 17 Ll~hGlwt~Rk 27 (284)
T TIGR02205 17 LLFHGLWTSRK 27 (284)
T ss_pred HHHcccccccc
Confidence 45569998865
No 33
>PTZ00370 STEVOR; Provisional
Probab=42.51 E-value=10 Score=27.50 Aligned_cols=27 Identities=11% Similarity=0.205 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhee
Q psy15007 11 NHFTIPDYIVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~~iG~~~~~ 37 (68)
..|.+.-.+.+++.++.++.|=+|.+.
T Consensus 252 aaF~Pygiaalvllil~vvliilYiwl 278 (296)
T PTZ00370 252 SAFYPYGIAALVLLILAVVLIILYIWL 278 (296)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444444433
No 34
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=41.64 E-value=33 Score=17.75 Aligned_cols=10 Identities=10% Similarity=-0.141 Sum_probs=4.7
Q ss_pred HHHHHhheec
Q psy15007 29 CAIGFFVGMC 38 (68)
Q Consensus 29 ~~iG~~~~~~ 38 (68)
+++.+++.||
T Consensus 28 l~~~l~~~~r 37 (40)
T PF08693_consen 28 LGAFLFFWYR 37 (40)
T ss_pred HHHHhheEEe
Confidence 3445555443
No 35
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=41.45 E-value=31 Score=19.16 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=7.5
Q ss_pred HHHHHHHHHhheec
Q psy15007 25 LVVSCAIGFFVGMC 38 (68)
Q Consensus 25 l~~~~~iG~~~~~~ 38 (68)
+++++..|.++...
T Consensus 10 ~lvv~LYgY~yhLY 23 (56)
T TIGR02736 10 LLVIFLYAYIYHLY 23 (56)
T ss_pred HHHHHHHHHHHHhh
Confidence 34445567665543
No 36
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=39.86 E-value=56 Score=22.94 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhee
Q psy15007 24 MLVVSCAIGFFVGM 37 (68)
Q Consensus 24 yl~~~~~iG~~~~~ 37 (68)
-++++++|.+..+|
T Consensus 283 ~lvlivLiaYli~R 296 (306)
T PF01299_consen 283 GLVLIVLIAYLIGR 296 (306)
T ss_pred HHHHHHHHhheeEe
Confidence 33334445544553
No 37
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=36.59 E-value=56 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheecc
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMCG 39 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~~ 39 (68)
.++-++++++-+.+++++|+|..+++
T Consensus 191 lpvvIaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 191 LPVVIALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666777777888999977643
No 38
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=35.71 E-value=46 Score=20.22 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheec
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
+.+.+.+.+++.+....-|++..++
T Consensus 37 ~~~~~~~~~i~~ls~~~GG~~a~~~ 61 (116)
T PF12670_consen 37 SILPWLVVIIYILSVFIGGFYAGRK 61 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999988889988754
No 39
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=35.70 E-value=22 Score=22.89 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q psy15007 18 YIVLLTMLVVSCAIGFFVG 36 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~ 36 (68)
|+.+++-+...+.+|+..+
T Consensus 46 YIL~vmgfFgff~~gImls 64 (129)
T PF02060_consen 46 YILVVMGFFGFFTVGIMLS 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444433
No 40
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=34.29 E-value=55 Score=19.17 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy15007 11 NHFTIPDYIVLLTMLVVSC 29 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~ 29 (68)
..+++++|+|+++-.++++
T Consensus 2 gg~s~~ellIIlvIvlLlF 20 (75)
T PRK04561 2 GSFSIWHWLVVLVIVLLVF 20 (75)
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 4578889888877555543
No 41
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=34.11 E-value=31 Score=20.99 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhee
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~~ 37 (68)
.+|.-.+++.+++++.+=.|+.+
T Consensus 32 ~Lgm~~lvI~~iFil~VilwfvC 54 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVILWFVC 54 (94)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH
Confidence 34444555555544455556544
No 42
>PRK03427 cell division protein ZipA; Provisional
Probab=33.83 E-value=57 Score=24.02 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhheecc
Q psy15007 22 LTMLVVSCAIGFFVGMCG 39 (68)
Q Consensus 22 ~~yl~~~~~iG~~~~~~~ 39 (68)
++-++.+++=|+|.+||-
T Consensus 14 AIAIiAlL~HGlWtsRKe 31 (333)
T PRK03427 14 AIAIIALLVHGFWTSRKE 31 (333)
T ss_pred HHHHHHHHHHhhhhcccc
Confidence 344555667899998653
No 43
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.76 E-value=61 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q psy15007 18 YIVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~ 37 (68)
.+.+++.+++=+..|+|.++
T Consensus 7 il~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666678888874
No 44
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=33.71 E-value=62 Score=20.69 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhee
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~~ 37 (68)
+.|+.+++++.++...++.+..+
T Consensus 182 ~~~~~~L~~~~~v~~~la~~~~~ 204 (208)
T TIGR03062 182 WQAVAVLLLILVVFLALSLLSAR 204 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888788877653
No 45
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=33.49 E-value=26 Score=20.25 Aligned_cols=21 Identities=5% Similarity=0.116 Sum_probs=17.6
Q ss_pred ceeecCCCCCHHHHHhhhhhc
Q psy15007 47 DFLLGSSSMGTLPMALSLAAS 67 (68)
Q Consensus 47 dyflggr~m~~~~vglSl~AT 67 (68)
-|-+.||+++.-.++++.++|
T Consensus 4 ~Y~I~Gr~V~~H~LAi~tLg~ 24 (71)
T PF11022_consen 4 AYTIFGRQVQSHYLAIATLGT 24 (71)
T ss_pred eeeecccccccchhHHHHHHH
Confidence 488899999999999887664
No 46
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.30 E-value=53 Score=21.78 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhe
Q psy15007 11 NHFTIPDYIVLLTMLVVSCAIGFFVG 36 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~~iG~~~~ 36 (68)
...+..||..|++..+.++++-+...
T Consensus 144 f~~~~~~w~~f~~~~~~~~~~p~ll~ 169 (181)
T PF05753_consen 144 FSSHVMDWGAFAIMTLPVLLIPYLLW 169 (181)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHhh
Confidence 34557999999887777766554433
No 47
>PRK10574 putative major pilin subunit; Provisional
Probab=33.27 E-value=79 Score=20.28 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15007 9 LDNHFTIPDYIVLLTMLVVSCAIGF 33 (68)
Q Consensus 9 ~~~~~~~~D~~v~~~yl~~~~~iG~ 33 (68)
.+..|+.+.+.|.++-+.++.++++
T Consensus 3 ~q~GFTLIELmIViaIigILaaiai 27 (146)
T PRK10574 3 KQRGFTLIELMVVIAIIAILSAIGI 27 (146)
T ss_pred ccCceeHHHHHHHHHHHHHHHHHHH
Confidence 4568999999988887777665544
No 48
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=33.09 E-value=78 Score=18.89 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhe
Q psy15007 12 HFTIPDYIVLLTMLVVSCAIGFFVG 36 (68)
Q Consensus 12 ~~~~~D~~v~~~yl~~~~~iG~~~~ 36 (68)
.++-+-+.+++.++++.+.++.|+.
T Consensus 22 ~~s~li~~~LilfviF~~~L~~yy~ 46 (83)
T PF05814_consen 22 GFSELIITLLILFVIFFCVLQVYYI 46 (83)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677788888888888999875
No 49
>PRK14762 membrane protein; Provisional
Probab=32.99 E-value=62 Score=15.29 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHH-HHHh
Q psy15007 14 TIPDYIVLLTMLVVSCA-IGFF 34 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~-iG~~ 34 (68)
.++-|++.++|++.++. .|.+
T Consensus 2 ki~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 2 KIILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred eeHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776554 4443
No 50
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=32.27 E-value=62 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy15007 11 NHFTIPDYIVLLTMLVVSC 29 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~ 29 (68)
..+++++++|+++-.++++
T Consensus 2 g~~g~~elliIl~IvlllF 20 (73)
T PRK02958 2 GSFSIWHWLIVLVIVVLVF 20 (73)
T ss_pred CCccHHHHHHHHHHHHHHh
Confidence 3578888888876666554
No 51
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=30.82 E-value=1.3e+02 Score=18.32 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=13.5
Q ss_pred eccCCcCCccceeecCCC
Q psy15007 37 MCGEKQTTSDDFLLGSSS 54 (68)
Q Consensus 37 ~~~~~~~s~~dyflggr~ 54 (68)
.|.||++++||-=.|++-
T Consensus 66 ~KAkrqrsTeEigFG~tp 83 (91)
T PF01708_consen 66 LKAKRQRSTEEIGFGNTP 83 (91)
T ss_pred eeeccCCceeeeeeCCCC
Confidence 455889999998777653
No 52
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=30.60 E-value=60 Score=18.84 Aligned_cols=13 Identities=8% Similarity=0.340 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q psy15007 22 LTMLVVSCAIGFF 34 (68)
Q Consensus 22 ~~yl~~~~~iG~~ 34 (68)
+++++++..+-++
T Consensus 11 ivf~ifVap~WL~ 23 (75)
T PF06667_consen 11 IVFMIFVAPIWLI 23 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444334333
No 53
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=30.46 E-value=26 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy15007 11 NHFTIPDYIVLLTMLVVSCAIGF 33 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~~iG~ 33 (68)
..++++|.+++++-+++..++.+
T Consensus 12 gkiniiDl~~~lvvl~v~~g~~~ 34 (168)
T PF14221_consen 12 GKINIIDLLAILVVLAVVVGIFW 34 (168)
T ss_pred eeEeHHHHHHHHHHHHHhheeEE
Confidence 45889999988887777544433
No 54
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=30.17 E-value=35 Score=16.28 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=11.8
Q ss_pred cCCCCCHHHHHhhhhh
Q psy15007 51 GSSSMGTLPMALSLAA 66 (68)
Q Consensus 51 ggr~m~~~~vglSl~A 66 (68)
||..+++|..++-++|
T Consensus 2 GGGai~~~~A~Lll~a 17 (27)
T TIGR03867 2 GGGAIAPWLAALLLAA 17 (27)
T ss_pred CCchhHHHHHHHHHHH
Confidence 5678888887776665
No 55
>COG3295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.08 E-value=53 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhh
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~ 65 (68)
+|..-+++.++.+.++++|.-.. |+ |.+.|.++|+..+
T Consensus 166 iDl~AvallvlaLTgL~ll~lh~--k~----------R~~~W~lvGlGsv 203 (213)
T COG3295 166 IDLLAVALLVLALTGLALLVLHT--KR----------RRVGWPLVGLGSV 203 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--Cc----------ccccceeecHHHH
Confidence 68877777777777788886422 22 5667777775443
No 56
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=30.05 E-value=77 Score=18.24 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhheecc-CCcCCccce
Q psy15007 23 TMLVVSCAIGFFVGMCG-EKQTTSDDF 48 (68)
Q Consensus 23 ~yl~~~~~iG~~~~~~~-~~~~s~~dy 48 (68)
+|++++....+|...++ |++...+-|
T Consensus 21 vf~i~s~f~~I~~Nl~~~r~~ge~SAY 47 (71)
T PF10260_consen 21 VFFILSGFYLIFTNLGTPRKPGELSAY 47 (71)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccch
Confidence 45555555556665544 444444444
No 57
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=30.02 E-value=60 Score=19.15 Aligned_cols=18 Identities=6% Similarity=0.274 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy15007 12 HFTIPDYIVLLTMLVVSC 29 (68)
Q Consensus 12 ~~~~~D~~v~~~yl~~~~ 29 (68)
.+++.+|+|+++-.++++
T Consensus 3 ~ig~~elliIlvV~lllf 20 (94)
T COG1826 3 GIGWSELLIILVVALLVF 20 (94)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 378899988877666653
No 58
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=29.98 E-value=75 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHH--HHHHHHHhhee
Q psy15007 11 NHFTIPDYIVLLTMLV--VSCAIGFFVGM 37 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~--~~~~iG~~~~~ 37 (68)
..|+..|..|.+...+ +...+|+...+
T Consensus 198 ~iFNlADi~I~~G~~llv~~~li~~~~~~ 226 (263)
T PRK14780 198 SIINLFDVYIVVGVCVLVVILIISFIIKW 226 (263)
T ss_pred ceeEHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688889888765543 33457877554
No 59
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=29.78 E-value=73 Score=18.72 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy15007 11 NHFTIPDYIVLLTMLVVSCA 30 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~~ 30 (68)
..+++++++|+++-.+++++
T Consensus 2 gg~g~~ellIIlvIvlllFG 21 (78)
T PRK00720 2 GSFSIWHWLIVLAVVLLLFG 21 (78)
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 35788888887776655543
No 60
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=29.66 E-value=1.2e+02 Score=18.66 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhe
Q psy15007 11 NHFTIPDYIVLLTMLVVSCAIGFFVG 36 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~~iG~~~~ 36 (68)
.+|..+=+..+++.+++..+|++.++
T Consensus 66 ~~F~L~~~~ti~lv~~~~~~I~lL~s 91 (103)
T PF12955_consen 66 VPFWLFAGFTIALVVLVAGAIGLLFS 91 (103)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888888889999886
No 61
>PF11982 DUF3483: Domain of unknown function (DUF3483); InterPro: IPR021872 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with PF02754 from PFAM.
Probab=29.54 E-value=87 Score=21.92 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCC--CCCHHHHHhhh
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSS--SMGTLPMALSL 64 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr--~m~~~~vglSl 64 (68)
.++||.++...++ ++ +|-.+-.++|+ +.-.=+-.|+ .+|+...+.|+
T Consensus 92 ~~L~w~ll~a~~~-m~-~Ga~fV~~RR~--~~P~RLS~G~w~rLP~sL~afa~ 140 (224)
T PF11982_consen 92 RILDWLLLAAALA-MF-VGALFVARRRR--NPPARLSKGPWMRLPKSLLAFAL 140 (224)
T ss_pred hHHHHHHHHHHHH-HH-HHHHHHHHHhc--CCCcccCCCChhHhHHHHHHHHH
Confidence 4689999888877 44 44443333233 3333344555 66776666654
No 62
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=29.10 E-value=80 Score=22.15 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheeccCCcCCccce
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDF 48 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dy 48 (68)
+.+--+++++-|+++++|.+....-+||+... .|
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~-gY 303 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA-GY 303 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc-cc
Confidence 44555678899999999999988887765544 55
No 63
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=28.74 E-value=82 Score=21.18 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCC
Q psy15007 19 IVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMG 56 (68)
Q Consensus 19 ~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~ 56 (68)
.+++.|++.++-.|++..+. .+.++..++ |++|.+
T Consensus 8 ~~i~~YLlGsip~~~ii~k~-~~~~DiR~~--GSgN~G 42 (198)
T PRK00220 8 LILLAYLLGSIPFALLVGKL-FGLPDPREH--GSGNPG 42 (198)
T ss_pred HHHHHHHHHhhhHHHHHHHH-hCCCChhhc--CCCCcc
Confidence 35678999999999998743 123455555 555543
No 64
>PRK01844 hypothetical protein; Provisional
Probab=28.64 E-value=83 Score=18.28 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhhee
Q psy15007 19 IVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 19 ~v~~~yl~~~~~iG~~~~~ 37 (68)
++.++.+++=+++|+|.++
T Consensus 8 ~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 8 LVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555678898873
No 65
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=27.46 E-value=90 Score=21.01 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCC
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMG 56 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~ 56 (68)
..+++.|++.++-.|++..+. .+.++..++ |++|.+
T Consensus 7 l~~~~~YLlGSip~~~~i~k~-~~g~DiR~~--GSgN~G 42 (196)
T TIGR00023 7 FLLLIGYLIGSIPFAYLVGKI-LKGIDIREH--GSGNPG 42 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHH-hCCCCchhc--CCCCcc
Confidence 445668999999999998743 123455555 555543
No 66
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=26.72 E-value=1.1e+02 Score=20.95 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=3.3
Q ss_pred ecCCCCC
Q psy15007 50 LGSSSMG 56 (68)
Q Consensus 50 lggr~m~ 56 (68)
.+++.+-
T Consensus 71 ~~~~~lE 77 (226)
T TIGR01433 71 HHSTKIE 77 (226)
T ss_pred cCCceee
Confidence 3455554
No 67
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=26.23 E-value=1e+02 Score=21.29 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHH--HHHHHHHHHhheecc
Q psy15007 11 NHFTIPDYIVLLTM--LVVSCAIGFFVGMCG 39 (68)
Q Consensus 11 ~~~~~~D~~v~~~y--l~~~~~iG~~~~~~~ 39 (68)
...+++-|++++++ +++-+.+|.|+.+++
T Consensus 198 ~~~g~f~wl~i~~~l~~~~Y~i~g~~~n~~~ 228 (268)
T PF09451_consen 198 GGWGFFTWLFIILFLFLAAYLIFGSWYNYNR 228 (268)
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhheeecc
Confidence 34555544444433 344567888887654
No 68
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=25.96 E-value=1.1e+02 Score=17.59 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFF 34 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~ 34 (68)
+++|.++|..-+.....-|+.
T Consensus 25 sivdiiiflailfgftiagwl 45 (73)
T PF07069_consen 25 SIVDIIIFLAILFGFTIAGWL 45 (73)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 457887777666555555544
No 69
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=25.93 E-value=23 Score=25.50 Aligned_cols=12 Identities=17% Similarity=-0.039 Sum_probs=0.0
Q ss_pred HHHHhheeccCC
Q psy15007 30 AIGFFVGMCGEK 41 (68)
Q Consensus 30 ~iG~~~~~~~~~ 41 (68)
.|.....+|+|+
T Consensus 164 iIa~icyrrkR~ 175 (290)
T PF05454_consen 164 IIACICYRRKRK 175 (290)
T ss_dssp ------------
T ss_pred HHHHHhhhhhhc
Confidence 344444444344
No 70
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.27 E-value=1.2e+02 Score=19.23 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHH-HHHHHHHHHHHHHh
Q psy15007 9 LDNHFTIPDYIV-LLTMLVVSCAIGFF 34 (68)
Q Consensus 9 ~~~~~~~~D~~v-~~~yl~~~~~iG~~ 34 (68)
++..+++.+.+. ++.|++++..+..+
T Consensus 2 ~~~~~~~~~~~~~~inflil~~lL~~f 28 (164)
T PRK14473 2 EKLGINLGLLIAQLINFLLLIFLLRTF 28 (164)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455667666544 33344444444433
No 71
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=25.16 E-value=44 Score=21.03 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=5.4
Q ss_pred HHHHHhhhhh
Q psy15007 57 TLPMALSLAA 66 (68)
Q Consensus 57 ~~~vglSl~A 66 (68)
+||+|+.++|
T Consensus 22 fWPlGla~La 31 (115)
T PF11014_consen 22 FWPLGLALLA 31 (115)
T ss_pred HHHHHHHHHH
Confidence 4556655543
No 72
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=25.12 E-value=97 Score=18.03 Aligned_cols=7 Identities=29% Similarity=0.454 Sum_probs=3.4
Q ss_pred CCcCCcc
Q psy15007 40 EKQTTSD 46 (68)
Q Consensus 40 ~~~~s~~ 46 (68)
||.|+.+
T Consensus 35 ~~DKT~~ 41 (72)
T PF13268_consen 35 KKDKTAK 41 (72)
T ss_pred cCCCcHH
Confidence 4455543
No 73
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=25.10 E-value=87 Score=14.45 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=2.8
Q ss_pred HHHHhhe
Q psy15007 30 AIGFFVG 36 (68)
Q Consensus 30 ~iG~~~~ 36 (68)
..++++.
T Consensus 23 ~~~~~~~ 29 (34)
T TIGR01167 23 LGGLLLR 29 (34)
T ss_pred HHHHHhe
Confidence 3444443
No 74
>PRK10845 colicin V production protein; Provisional
Probab=24.56 E-value=1.2e+02 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFF 34 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~ 34 (68)
|+++|++++++.+ .....|++
T Consensus 1 m~~lDiiil~il~-~~~i~G~~ 21 (162)
T PRK10845 1 MVWIDYAIIAVIG-FSALVSLI 21 (162)
T ss_pred CcHHHHHHHHHHH-HHHHHHHH
Confidence 5788997765443 33344443
No 75
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=24.55 E-value=1.3e+02 Score=16.18 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHHHH---HHHHHhhe
Q psy15007 11 NHFTIPDYIVLLTMLVVS---CAIGFFVG 36 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~---~~iG~~~~ 36 (68)
.++.++.|..+.+++..+ ..+-.|+.
T Consensus 2 PQmsPm~W~~l~~~f~~~~~~~~~~~~~~ 30 (53)
T MTH00260 2 PHLSPMSWLTAMIIFWFILLIFASSMWWS 30 (53)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777665444433 23445554
No 76
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=24.21 E-value=1.2e+02 Score=15.76 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhee
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~~ 37 (68)
.-.++++.-+........|+.+
T Consensus 14 ~Sl~vI~~~igm~~~~~~~F~~ 35 (42)
T PF11346_consen 14 MSLIVIVFTIGMGVFFIRYFIR 35 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556653
No 77
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=23.70 E-value=69 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhheec
Q psy15007 17 DYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 17 D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
-..|++++++++.+||..+.|+
T Consensus 13 ~igi~Ll~lLl~cgiGcvwhwk 34 (158)
T PF11770_consen 13 SIGISLLLLLLLCGIGCVWHWK 34 (158)
T ss_pred HHHHHHHHHHHHHhcceEEEee
Confidence 3444555566666788765543
No 78
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=23.17 E-value=1.1e+02 Score=17.51 Aligned_cols=16 Identities=0% Similarity=0.243 Sum_probs=9.8
Q ss_pred HHHHHHhheeccCCcC
Q psy15007 28 SCAIGFFVGMCGEKQT 43 (68)
Q Consensus 28 ~~~iG~~~~~~~~~~~ 43 (68)
...+.+||.++..|++
T Consensus 48 t~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 48 TYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHhHhhhhhhHhhhH
Confidence 4568888876543333
No 79
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=22.55 E-value=1.1e+02 Score=18.56 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy15007 11 NHFTIPDYIVLLTMLVVSC 29 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~ 29 (68)
..+++..++|+++-.++++
T Consensus 2 g~~g~~elliIlvIvlllF 20 (92)
T PRK00442 2 GIFDWKHWIVILVVVVLVF 20 (92)
T ss_pred CCccHHHHHHHHHHHHHHh
Confidence 3577888888776665554
No 80
>PRK14794 lipoprotein signal peptidase; Provisional
Probab=22.51 E-value=1.5e+02 Score=18.80 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy15007 10 DNHFTIPDYIVLLTMLVVS 28 (68)
Q Consensus 10 ~~~~~~~D~~v~~~yl~~~ 28 (68)
-+.|+..|..|.+.-.+++
T Consensus 99 ~pvFNvAD~~I~iGv~lll 117 (136)
T PRK14794 99 WPAFNLADIAIVLGALLFV 117 (136)
T ss_pred CceeeHHHHHHHHHHHHHH
Confidence 3578999999887755443
No 81
>COG4682 Predicted membrane protein [Function unknown]
Probab=22.48 E-value=83 Score=20.20 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeec
Q psy15007 12 HFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLG 51 (68)
Q Consensus 12 ~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflg 51 (68)
.|.++-|..+++= ++...+|+|-+ .-+-+.+.||+|
T Consensus 11 af~~va~~~lv~G-~vvyLiGLWna---~~qLnEKGYyfa 46 (128)
T COG4682 11 AFTIVAWLALVVG-AVVYLVGLWNA---CMQLNEKGYYFA 46 (128)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhccc---chhhccCceeeh
Confidence 3555666554332 22346899976 457788899986
No 82
>PF10095 DUF2333: Uncharacterized protein conserved in bacteria (DUF2333); InterPro: IPR016936 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.37 E-value=71 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhheec
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
..-.+++++|++++.++|+|.+..
T Consensus 14 ~~~~~~~~~~~~v~~~lg~~ws~~ 37 (336)
T PF10095_consen 14 KTVGALLAVYLLVVLILGVYWSRE 37 (336)
T ss_pred HHHHHHHHHHHHHHHHHheeEecC
Confidence 345677889999999999998843
No 83
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=22.23 E-value=43 Score=18.97 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhheeccCCcCCccceeecC
Q psy15007 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGS 52 (68)
Q Consensus 17 D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflgg 52 (68)
-+.-|+.|++....+...+.. +.++..++||.+.
T Consensus 25 g~~Gf~~f~~~~~~~s~~~~~--~~~~~~~~~f~~~ 58 (81)
T PF07019_consen 25 GLYGFIFFFLSSFLVSLLYYA--KAGFPDEDYFGGP 58 (81)
T ss_pred cHHHHHHHHHHHHHHHHHHHH--HhcCChhhhcCCH
Confidence 345677788887777666542 2344556777543
No 84
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=22.21 E-value=83 Score=20.24 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhee
Q psy15007 23 TMLVVSCAIGFFVGM 37 (68)
Q Consensus 23 ~yl~~~~~iG~~~~~ 37 (68)
+-.++.++.|+|...
T Consensus 126 ~g~ll~i~~giy~~~ 140 (145)
T PF10661_consen 126 GGILLAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHHHHHH
Confidence 335566678888654
No 85
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.16 E-value=64 Score=18.29 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhee
Q psy15007 22 LTMLVVSCAIGFFVGM 37 (68)
Q Consensus 22 ~~yl~~~~~iG~~~~~ 37 (68)
++.+++=+++|+|.++
T Consensus 4 ilali~G~~~Gff~ar 19 (64)
T PF03672_consen 4 ILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455578888874
No 86
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.12 E-value=1.1e+02 Score=14.60 Aligned_cols=19 Identities=5% Similarity=0.464 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy15007 11 NHFTIPDYIVLLTMLVVSC 29 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~~ 29 (68)
+++.+..|..+..++..+.
T Consensus 2 PQmsPm~W~~l~~~f~~~~ 20 (32)
T MTH00158 2 PQMSPMNWLILFILFLITF 20 (32)
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 4677788877666555543
No 87
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=22.02 E-value=1.1e+02 Score=19.83 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhheeccCC
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEK 41 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~~~~~~~~ 41 (68)
-+..+..+..+|-.+++.+|.+.+++.|+
T Consensus 146 ~~~~~~~~~~~y~~~Ll~~~~~la~~~R~ 174 (238)
T PF00003_consen 146 NSNIWLILSLGYNGLLLLIGFFLAFKTRN 174 (238)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34466678889999999999998876554
No 88
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=21.92 E-value=1.6e+02 Score=16.48 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhheeccC
Q psy15007 19 IVLLTMLVVSCAIGFFVGMCGE 40 (68)
Q Consensus 19 ~v~~~yl~~~~~iG~~~~~~~~ 40 (68)
+++.++.+.+++-|+++..|++
T Consensus 6 v~lll~ii~sL~saL~~l~kd~ 27 (63)
T PF11137_consen 6 VLLLLAIIASLFSALFFLVKDK 27 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC
Confidence 4455666777888999886543
No 89
>PRK15066 inner membrane transport permease; Provisional
Probab=21.62 E-value=1.4e+02 Score=19.96 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhee
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~~ 37 (68)
+.++.+.+++.++...+|.+..+
T Consensus 228 ~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 228 WLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888889988653
No 90
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=21.49 E-value=1.1e+02 Score=18.25 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=14.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q psy15007 8 GLDNHFTIPDYIVLLTMLVVSC 29 (68)
Q Consensus 8 ~~~~~~~~~D~~v~~~yl~~~~ 29 (68)
|.+..+++..++++++..++++
T Consensus 1 m~mF~iG~~ElliIlvVaLlvf 22 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVF 22 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHc
Confidence 3456678888887776655553
No 91
>PRK11677 hypothetical protein; Provisional
Probab=21.43 E-value=1.1e+02 Score=19.52 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhheec
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~ 38 (68)
|++.++-|++=++||++..|.
T Consensus 3 W~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555556666666788877653
No 92
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=21.19 E-value=1.3e+02 Score=21.03 Aligned_cols=21 Identities=19% Similarity=0.391 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhheec
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~ 38 (68)
+.++++|+++..++-...+.|
T Consensus 26 ~~~filYfiv~~~i~~~~~~R 46 (233)
T PF09973_consen 26 FEVFILYFIVFFGIMIVMGIR 46 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888777766544
No 93
>COG4708 Predicted membrane protein [Function unknown]
Probab=20.96 E-value=59 Score=21.68 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecC
Q psy15007 12 HFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGS 52 (68)
Q Consensus 12 ~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflgg 52 (68)
+++++|..+=..--++.+..|.+.- .+-++||+.-|
T Consensus 69 S~g~iDv~~G~~sT~I~l~Lgv~~f-----~ky~Kdy~~ng 104 (169)
T COG4708 69 SFGWIDVFVGGLSTLIFLSLGVILF-----SKYSKDYLFNG 104 (169)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh-----hhhhhhhhhcc
Confidence 4788898876666666666665533 13445676654
No 94
>PRK04335 cell division protein ZipA; Provisional
Probab=20.88 E-value=1.1e+02 Score=22.40 Aligned_cols=16 Identities=6% Similarity=0.029 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhheec
Q psy15007 23 TMLVVSCAIGFFVGMC 38 (68)
Q Consensus 23 ~yl~~~~~iG~~~~~~ 38 (68)
+-++.+++=|+|.++|
T Consensus 14 lAI~ALL~HGlWtsrK 29 (313)
T PRK04335 14 LAIAALLFHGLWTSKK 29 (313)
T ss_pred HHHHHHHHhccccccc
Confidence 3344566789999854
No 95
>PRK14393 membrane protein; Provisional
Probab=20.70 E-value=1.3e+02 Score=20.18 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCC
Q psy15007 19 IVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMG 56 (68)
Q Consensus 19 ~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~ 56 (68)
.+++.|++.++-.|++..+. +..+..++ |++|.+
T Consensus 7 ~~i~~YLlGSip~~~ii~k~--~g~DiR~~--GSgN~G 40 (194)
T PRK14393 7 LLVGAYLLGSIPTGLLLAKA--VGVDIRNT--GSGNIG 40 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHH--hCCCchhc--CCCCcc
Confidence 45678999999999998753 24466665 555543
No 96
>PRK10927 essential cell division protein FtsN; Provisional
Probab=20.70 E-value=1.1e+02 Score=22.56 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhheec
Q psy15007 18 YIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 18 ~~v~~~yl~~~~~iG~~~~~~ 38 (68)
.+++++-++++++-|+||--.
T Consensus 36 m~alAvavlv~fiGGLyFith 56 (319)
T PRK10927 36 MVAIAAAVLVTFIGGLYFITH 56 (319)
T ss_pred HHHHHHHHHHHHhhheEEEec
Confidence 566677777778889998744
No 97
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.52 E-value=83 Score=19.69 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHhh
Q psy15007 21 LLTMLVVSCAIGFFV 35 (68)
Q Consensus 21 ~~~yl~~~~~iG~~~ 35 (68)
+++.+++.++..+|.
T Consensus 26 l~~lll~~~~~~~~~ 40 (146)
T PF14316_consen 26 LLALLLLLLILLLWR 40 (146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333344443
No 98
>KOG2348|consensus
Probab=20.11 E-value=65 Score=25.51 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCcCCccceeecCCCCCHHHHHhhhhhc
Q psy15007 40 EKQTTSDDFLLGSSSMGTLPMALSLAAS 67 (68)
Q Consensus 40 ~~~~s~~dyflggr~m~~~~vglSl~AT 67 (68)
+..+++|+|-.+||++..-.++-.++++
T Consensus 38 ~e~~tsE~FtTA~rsVkTGLiasaVVSs 65 (667)
T KOG2348|consen 38 GEVQTSEHFTTASRSVKTGLIASAVVSS 65 (667)
T ss_pred ccccchhhhcccccccccceehhhhhhh
Confidence 3467899999999999877777555543
Done!