Query psy15007
Match_columns 68
No_of_seqs 150 out of 1034
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:03:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xq2_A Sodium/glucose cotransp 99.5 1.1E-14 3.8E-19 107.5 4.8 57 12-68 7-64 (593)
2 3dh4_A Sodium/glucose cotransp 98.4 1.1E-08 3.9E-13 74.6 -2.5 31 38-68 5-35 (530)
3 2ks1_B Epidermal growth factor 86.5 1.3 4.4E-05 22.7 3.8 29 15-43 12-41 (44)
4 2jwa_A Receptor tyrosine-prote 81.7 1.4 4.9E-05 22.6 2.7 25 13-37 11-37 (44)
5 1vf5_E Protein PET L; photosyn 79.4 1.8 6.1E-05 20.9 2.4 24 14-38 4-27 (32)
6 2l2t_A Receptor tyrosine-prote 79.2 3.2 0.00011 21.2 3.6 32 12-43 8-40 (44)
7 2zt9_E Cytochrome B6-F complex 67.7 5.9 0.0002 18.9 2.6 23 15-38 4-26 (31)
8 2knc_A Integrin alpha-IIB; tra 42.7 16 0.00053 19.3 1.9 16 52-67 7-22 (54)
9 2k1a_A Integrin alpha-IIB; sin 40.7 19 0.00065 18.0 2.0 15 52-66 5-19 (42)
10 2k21_A Potassium voltage-gated 38.2 15 0.00051 22.9 1.6 9 28-36 65-73 (138)
11 2k9y_A Ephrin type-A receptor 36.3 37 0.0013 16.0 4.7 26 11-36 10-36 (41)
12 2zvv_Y Cyclin-dependent kinase 25.6 9.9 0.00034 17.2 -0.6 17 39-55 3-19 (26)
13 1iij_A ERBB-2 receptor protein 23.7 26 0.00088 16.9 0.7 8 29-36 25-32 (35)
14 3sok_A Fimbrial protein; pilus 21.7 1E+02 0.0035 18.3 3.4 21 13-33 1-21 (151)
15 1oqw_A Fimbrial protein; type 21.1 1.1E+02 0.0038 17.9 3.4 22 13-34 1-22 (144)
16 2hi2_A Fimbrial protein; type 20.5 1E+02 0.0035 18.2 3.2 22 13-34 1-22 (158)
No 1
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=99.50 E-value=1.1e-14 Score=107.54 Aligned_cols=57 Identities=19% Similarity=0.361 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhheeccCC-cCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 12 HFTIPDYIVLLTMLVVSCAIGFFVGMCGEK-QTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 12 ~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~-~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
+++++|++++++|+++++++|+|.+|+.|+ ++++||||+|||++|||++++|++||+
T Consensus 7 ~~~~~d~~i~~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~ 64 (593)
T 2xq2_A 7 GLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAAN 64 (593)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999998865332 357999999999999999999999874
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.40 E-value=1.1e-08 Score=74.63 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=27.4
Q ss_pred ccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007 38 CGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68 (68)
Q Consensus 38 ~~~~~~s~~dyflggr~m~~~~vglSl~AT~ 68 (68)
|+||+++.||||+|||++|||++++|++||+
T Consensus 5 ~~~~~~~~~dy~laGR~l~~~~~~~s~~at~ 35 (530)
T 3dh4_A 5 XXXXXXXXXXXXXAGKSLPWWAVGASLIAAN 35 (530)
T ss_dssp HHHHHHHHHHHHCCCSCCCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999974
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=86.54 E-value=1.3 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=13.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHhheeccCCcC
Q psy15007 15 IPDYIVLL-TMLVVSCAIGFFVGMCGEKQT 43 (68)
Q Consensus 15 ~~D~~v~~-~yl~~~~~iG~~~~~~~~~~~ 43 (68)
.+--.|++ +.+++.++.++|+.+++|+++
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 34344443 444444455545444444443
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=81.66 E-value=1.4 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHHH--HHHHhhee
Q psy15007 13 FTIPDYIVLLTMLVVSC--AIGFFVGM 37 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~--~iG~~~~~ 37 (68)
...+--.++.+.+++++ ++++|.++
T Consensus 11 ~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 11 LTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 33344445544444444 45566553
No 5
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=79.38 E-value=1.8 Score=20.87 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhheec
Q psy15007 14 TIPDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 14 ~~~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
..+||+++...+.. ++.|+|+..|
T Consensus 4 a~i~yi~~l~~~f~-iA~GL~fGlr 27 (32)
T 1vf5_E 4 GAVFYIVFIALFFG-IAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTTTT
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45788777665544 4789999864
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=79.18 E-value=3.2 Score=21.19 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=14.5
Q ss_pred CCCHHHHHHHH-HHHHHHHHHHHhheeccCCcC
Q psy15007 12 HFTIPDYIVLL-TMLVVSCAIGFFVGMCGEKQT 43 (68)
Q Consensus 12 ~~~~~D~~v~~-~yl~~~~~iG~~~~~~~~~~~ 43 (68)
+-..+--.|+. +..++.++.++|+.+|+|+++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33445555554 444444444444444444433
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=67.66 E-value=5.9 Score=18.86 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhheec
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVGMC 38 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~~~ 38 (68)
.+||+.+...+.. ++.|+|+..|
T Consensus 4 ~i~y~~~l~~~~~-iA~GL~fGLr 26 (31)
T 2zt9_E 4 IVAYIGFLALFTG-IAAGLLFGLR 26 (31)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4678776655544 4788888764
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.68 E-value=16 Score=19.32 Aligned_cols=16 Identities=0% Similarity=-0.002 Sum_probs=12.6
Q ss_pred CCCCCHHHHHhhhhhc
Q psy15007 52 SSSMGTLPMALSLAAS 67 (68)
Q Consensus 52 gr~m~~~~vglSl~AT 67 (68)
...+|||.+.+|+++.
T Consensus 7 ~~~vp~wiIi~svl~G 22 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGG 22 (54)
T ss_dssp TTTCCHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHH
Confidence 4578999999988763
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=40.66 E-value=19 Score=17.99 Aligned_cols=15 Identities=0% Similarity=-0.011 Sum_probs=12.1
Q ss_pred CCCCCHHHHHhhhhh
Q psy15007 52 SSSMGTLPMALSLAA 66 (68)
Q Consensus 52 gr~m~~~~vglSl~A 66 (68)
....|||.+.+|.++
T Consensus 5 ~~~vp~wiIi~s~l~ 19 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLG 19 (42)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHH
Confidence 357899999988875
No 10
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=38.23 E-value=15 Score=22.92 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=3.7
Q ss_pred HHHHHHhhe
Q psy15007 28 SCAIGFFVG 36 (68)
Q Consensus 28 ~~~iG~~~~ 36 (68)
.+.+|+-.+
T Consensus 65 ff~~GImLs 73 (138)
T 2k21_A 65 FFTLGIMLS 73 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 11
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=36.30 E-value=37 Score=16.02 Aligned_cols=26 Identities=12% Similarity=-0.272 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHhhe
Q psy15007 11 NHFTIPDYIVLLTMLVVS-CAIGFFVG 36 (68)
Q Consensus 11 ~~~~~~D~~v~~~yl~~~-~~iG~~~~ 36 (68)
.+...+--.+.+...++. +.+.+++.
T Consensus 10 ~~~~~I~~~vv~Gv~ll~~iv~~~~~~ 36 (41)
T 2k9y_A 10 SGNLAVIGGVAVGVVLLLVLAGVGFFI 36 (41)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CceEEEEeehhHHHHHHHHHHHHheeE
Confidence 333444444444444333 33334443
No 12
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=25.57 E-value=9.9 Score=17.21 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=12.1
Q ss_pred cCCcCCccceeecCCCC
Q psy15007 39 GEKQTTSDDFLLGSSSM 55 (68)
Q Consensus 39 ~~~~~s~~dyflggr~m 55 (68)
++||.+..||+-+-|.+
T Consensus 3 KrkQTs~TDFYhsKRRl 19 (26)
T 2zvv_Y 3 KRRQTSMTDFYHSKRRL 19 (26)
T ss_pred cccccchhHHHhhhceE
Confidence 35677888888776653
No 13
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.67 E-value=26 Score=16.93 Aligned_cols=8 Identities=13% Similarity=0.617 Sum_probs=4.6
Q ss_pred HHHHHhhe
Q psy15007 29 CAIGFFVG 36 (68)
Q Consensus 29 ~~iG~~~~ 36 (68)
+++|+|.+
T Consensus 25 l~~~~~iR 32 (35)
T 1iij_A 25 VVVGILIK 32 (35)
T ss_dssp TTTTHHHH
T ss_pred HHhheEEe
Confidence 34666664
No 14
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=21.74 E-value=1e+02 Score=18.30 Aligned_cols=21 Identities=14% Similarity=0.487 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGF 33 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~ 33 (68)
|+.+.++|+++-+.++.++.+
T Consensus 1 FTLiEllvviaIigiLaaia~ 21 (151)
T 3sok_A 1 FTLIELMIVVAIIGILAAFAI 21 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 567788877777776665544
No 15
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=21.08 E-value=1.1e+02 Score=17.85 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFF 34 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~ 34 (68)
|+.+.+.|+++-+.++.++++-
T Consensus 1 FTLiEllivi~Ii~il~~ia~p 22 (144)
T 1oqw_A 1 FTLIELMIVVAIIGILAAIAIP 22 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5677887777777766665543
No 16
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=20.47 E-value=1e+02 Score=18.18 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFF 34 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~ 34 (68)
|+.+.++|+++-+.++.++.+-
T Consensus 1 fTLiEl~vvi~ii~il~~~~~p 22 (158)
T 2hi2_A 1 XTLIELMIVIAIVGILAAVALP 22 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5678888877777777666553
Done!