Query psy15007
Match_columns 68
No_of_seqs 150 out of 1034
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 18:03:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15007.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15007hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 50.6 8.8 0.00064 20.4 3.4 22 13-34 1-22 (158)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 26.0 27 0.002 14.9 3.0 22 15-36 3-24 (30)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 25.5 28 0.0021 15.0 2.4 21 16-37 6-26 (32)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 24.7 41 0.003 17.5 3.3 10 45-54 61-70 (100)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 21.7 52 0.0038 17.4 3.4 12 44-55 66-77 (107)
6 d2iuba2 f.17.3.1 (A:286-349) M 18.6 46 0.0033 15.9 2.5 15 21-35 46-60 (64)
7 d1u19a_ f.13.1.2 (A:) Rhodopsi 16.7 53 0.0039 19.2 2.9 35 17-51 36-77 (348)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 16.3 24 0.0018 16.1 0.9 21 16-36 3-23 (37)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 12.6 14 0.001 19.4 -0.7 6 49-54 56-61 (91)
10 d1kwga1 b.71.1.1 (A:591-644) A 12.4 22 0.0016 17.4 0.0 13 45-57 34-46 (54)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=50.62 E-value=8.8 Score=20.40 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q psy15007 13 FTIPDYIVLLTMLVVSCAIGFF 34 (68)
Q Consensus 13 ~~~~D~~v~~~yl~~~~~iG~~ 34 (68)
|+.+.++|+++-+.++.++++=
T Consensus 1 FTLIELlVViaIIgILaaia~P 22 (158)
T d2pila_ 1 FTLIELMIVIAIVGILAAVALP 22 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 6788888888888887776654
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.00 E-value=27 Score=14.94 Aligned_cols=22 Identities=9% Similarity=0.330 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhe
Q psy15007 15 IPDYIVLLTMLVVSCAIGFFVG 36 (68)
Q Consensus 15 ~~D~~v~~~yl~~~~~iG~~~~ 36 (68)
.+-|+.+.++++.+....++++
T Consensus 3 ~i~yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred eeehHHHHHHHHHHHHHHHHhc
Confidence 4667777777777777777764
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.45 E-value=28 Score=15.02 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhee
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVGM 37 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~~ 37 (68)
+=|++|++.+.. +++|+.+..
T Consensus 6 vfyivfialffg-iavgiifai 26 (32)
T d2e74e1 6 VFYIVFIALFFG-IAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHH
T ss_pred eHHHHHHHHHHH-HHhhheeeE
Confidence 445565554443 367777664
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=24.74 E-value=41 Score=17.54 Aligned_cols=10 Identities=10% Similarity=-0.077 Sum_probs=4.5
Q ss_pred ccceeecCCC
Q psy15007 45 SDDFLLGSSS 54 (68)
Q Consensus 45 ~~dyflggr~ 54 (68)
..+.+.++..
T Consensus 61 ~~~~~~~n~~ 70 (100)
T d3dtub2 61 VPARFTHNSP 70 (100)
T ss_dssp SCCCCCCCHH
T ss_pred CCccccCcch
Confidence 3344555443
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=21.74 E-value=52 Score=17.44 Aligned_cols=12 Identities=0% Similarity=-0.011 Sum_probs=6.2
Q ss_pred CccceeecCCCC
Q psy15007 44 TSDDFLLGSSSM 55 (68)
Q Consensus 44 s~~dyflggr~m 55 (68)
....+|.++..+
T Consensus 66 ~~~~~~~~n~~l 77 (107)
T d3ehbb2 66 PVPARFTHNTPI 77 (107)
T ss_dssp SSCCCCCCCHHH
T ss_pred ccccccccchHH
Confidence 344556665433
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=18.56 E-value=46 Score=15.93 Aligned_cols=15 Identities=20% Similarity=0.312 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHhh
Q psy15007 21 LLTMLVVSCAIGFFV 35 (68)
Q Consensus 21 ~~~yl~~~~~iG~~~ 35 (68)
+++-+.+.+..-+|+
T Consensus 46 ~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 46 LAVMGVIAVIMVVYF 60 (64)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.74 E-value=53 Score=19.18 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHh-------heeccCCcCCccceeec
Q psy15007 17 DYIVLLTMLVVSCAIGFF-------VGMCGEKQTTSDDFLLG 51 (68)
Q Consensus 17 D~~v~~~yl~~~~~iG~~-------~~~~~~~~~s~~dyflg 51 (68)
-+.++.+++.++..+|+. .-.+.|+.++..++++.
T Consensus 36 ~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~ 77 (348)
T d1u19a_ 36 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILL 77 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHH
Confidence 466666666665555532 22223444566666664
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=16.29 E-value=24 Score=16.06 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhe
Q psy15007 16 PDYIVLLTMLVVSCAIGFFVG 36 (68)
Q Consensus 16 ~D~~v~~~yl~~~~~iG~~~~ 36 (68)
+|.+-+.+|..-....|+.+.
T Consensus 3 ~D~Aql~ly~Fw~FFagLi~Y 23 (37)
T d1eysh2 3 IDAAQITIWAFWLFFFGLIIY 23 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665665544
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=12.57 E-value=14 Score=19.41 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.8
Q ss_pred eecCCC
Q psy15007 49 LLGSSS 54 (68)
Q Consensus 49 flggr~ 54 (68)
..+|..
T Consensus 56 ~~~n~~ 61 (91)
T d1fftb2 56 WSHSNK 61 (91)
T ss_dssp CCCCSH
T ss_pred ccCCce
Confidence 445543
No 10
>d1kwga1 b.71.1.1 (A:591-644) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=12.35 E-value=22 Score=17.36 Aligned_cols=13 Identities=46% Similarity=0.807 Sum_probs=10.8
Q ss_pred ccceeecCCCCCH
Q psy15007 45 SDDFLLGSSSMGT 57 (68)
Q Consensus 45 ~~dyflggr~m~~ 57 (68)
..++++|++.+++
T Consensus 34 ~a~fvlG~~~i~p 46 (54)
T d1kwga1 34 GARFLLGSRRVGP 46 (54)
T ss_dssp TCEEEESCSEECT
T ss_pred CCEEEecccccCC
Confidence 4689999998875
Done!