RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15007
(68 letters)
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and
pyruvate, short-chain fatty acids, ketone bodies,
nicotinate and its structural analogs, pyroglutamate,
benzoate and its derivatives, and iodide. SMCT2
(encoded by the SLC5A12 gene) is a low-affinity
transporter for short-chain fatty acids, lactate,
pyruvate, and nicotinate. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 522
Score = 69.0 bits (170), Expect = 8e-16
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 16 PDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
DY+V ML++S IG + G G KQ T++++LLG SM P+ALSL AS
Sbjct: 1 VDYVVFAAMLLISAGIGIYFGFFGGKQKTTEEYLLGGRSMSVFPVALSLLASF 53
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is
a high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty
acids, ketone bodies, nicotinate and its structural
analogs, pyroglutamate, benzoate and its derivatives,
and iodide. Human SMCT1 (hSMCT1, also called AIT) is
encoded by the tumor suppressor gene SLC5A8. Its
expression is under the control of the C/EBP
transcription factor. Its tumor-suppressive role is
related to uptake of butyrate, propionate, and
pyruvate, these latter are inhibitors of histone
deacetylases. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 59.8 bits (145), Expect = 2e-12
Identities = 29/55 (52%), Positives = 36/55 (65%)
Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
FT+ DY+V ML+VS AIG + G Q TS DFL+G SM +P+ALSL AS
Sbjct: 4 FTVWDYVVFALMLLVSAAIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTAS 58
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1
and 2 and related proteins; solute-binding domain.
SMCT1 is a high-affinity transporter of various
monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. Human SMCT1 (hSMCT1, also
called AIT) is encoded by the tumor suppressor gene
SLC5A8. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. It also mediates
iodide transport from thyrocyte into the colloid lumen
in thyroid gland and, through transporting L-lactate
and ketone bodies, helps maintain the energy status and
the function of neurons. SMCT2 is a low-affinity
transporter for short-chain fatty acids, lactate,
pyruvate, and nicotinate. hSMCT2 is encoded by the
SLC5A12 gene. SMCT2 is expressed in the kidney, small
intestine, skeletal muscle, and retina. In the kidney,
SMCT2 may initiate lactate absorption in the early
parts of the tubule, SMCT1 in the latter parts of the
tubule. In the retina, SMCT1 and SMCT2 may play a
differential role in monocarboxylate transport in a
cell type-specific manner. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 536
Score = 58.2 bits (141), Expect = 5e-12
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
FT+ DY+V ML++S IG + G Q TS DFL+G SM +P+ALSL AS
Sbjct: 4 FTVWDYVVFALMLLISAGIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTAS 58
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at
SMVT promoter loci. The cis regulatory elements,
Kruppel-like factor 4 and activator protein-2, regulate
the activity of the human SMVT promoter in the
intestine. Glycosylation of the hSMVT is important for
its transport function. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 527
Score = 53.3 bits (128), Expect = 3e-10
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
F+ DY+V + +LV S IG + G +Q T+ +FL+ MG LP+ALSL A+
Sbjct: 1 FSTVDYVVFVLLLVASAGIGLYYACSGGRQRTTQEFLMADRKMGCLPVALSLLAT 55
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related
proteins; solute-binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. NIS is expressed in the thyroid,
colon, ovary, and in human breast cancers. It mediates
the active transport and the concentration of iodide
from the blood into thyroid follicular cells, a
fundamental step in thyroid hormone biosynthesis, and
is the basis of radioiodine therapy for thyroid cancer.
Mutation in the SLC5A5 gene can result in a form of
thyroid hormone dysgenesis. Human NIS exists mainly as
a dimer stabilized by a disulfide bridge. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 535
Score = 49.8 bits (119), Expect = 5e-09
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
DY V ML+VS IG FVG+ Q TSDDF G M +P+ LSL+AS
Sbjct: 2 DYGVFALMLLVSTGIGLFVGLSRGGQKTSDDFFTGGRRMAAVPVGLSLSAS 52
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2
and related proteins; solute-binding domain. SMCT2 is
a low-affinity transporter for short-chain fatty acids,
lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2)
is encoded by the SLC5A12 gene. SMCT2 is expressed in
the kidney, small intestine, skeletal muscle, and
retina. In the kidney, it is expressed in the apical
membrane of the proximal convoluted tubule, along the
entire length of the tubule (in contrast to the
high-affinity monocarboxylate transporter SMCT1,
belonging to a different family, which is limited to
the S3 segment of the tubule). SMCT2 may initiate
lactate absorption in the early parts of the tubule. In
the retina, SMCT1 and SMCT2 may play a differential
role in monocarboxylate transport in a cell
type-specific manner, SMCT2 is expressed exclusively in
Muller cells. Nicotine transport by hSMCT2 is inhibited
by several non-steroidal anti-inflammatory drugs. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 529
Score = 46.0 bits (109), Expect = 1e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
F DY+V + +VS IG F + K+ TS +FL+G M P+ALSL AS
Sbjct: 4 FVAWDYVVFAGLFLVSSGIGVFFAIKERKKATSKEFLVGGRQMSCGPVALSLTAS 58
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and
pyruvate, short-chain fatty acids, ketone bodies,
nicotinate and its structural analogs, pyroglutamate,
benzoate and its derivatives, and iodide. SMCT2
(product of the SLC5A12 gene) is a low-affinity
transporter for short-chain fatty acids, lactate,
pyruvate, and nicotinate. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 42.9 bits (102), Expect = 1e-06
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
DY+V+ L++ IG + K +++DF LG M +A S+ A+
Sbjct: 1 DYLVIALYLLILLLIGIYTS---RKNKSNEDFFLGGRQMPWYLVAFSMIAT 48
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports
biotin, pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2.
SMCT1 is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 39.5 bits (93), Expect = 3e-05
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
D++VL+ L+ G + G +D+ LG SM P+ LS+ A+Q
Sbjct: 2 DWVVLIGYLLGILVYGLYKG---RGNKNQEDYFLGGRSMPWWPIGLSVMATQ 50
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 35.7 bits (83), Expect = 5e-04
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
+ I+ L L++ IG + K + +D+ LG S+G ALS AAS
Sbjct: 1 IMLILLIIFLIYLILMLLIGLYAY---RKTKSLEDYFLGGRSLGPFVYALSAAASD 53
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and
related proteins; solute binding domain. Escherichia
coli PutP catalyzes the Na+-coupled uptake of proline
with a stoichiometry of 1:1. The putP gene is part of
the put operon; this operon in addition encodes a
proline dehydrogenase, allowing the use of proline as a
source of nitrogen and/or carbon. This subfamily also
includes the Bacillus subtilis Na+/proline
cotransporter (OpuE) which has an osmoprotective
instead of catabolic role. Expression of the opuE gene
is under osmotic control and different sigma factors
contribute to its regulation; it is also a putative
CcpA-activated gene. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 464
Score = 34.0 bits (79), Expect = 0.002
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 18 YIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
I + L++ IG + K T D+ LG S+G ALS AS
Sbjct: 1 LITFIVYLLLMLGIGIYSYR---KTKTLSDYFLGGRSLGPWVTALSAGAS 47
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family,
human SGLT3, has been characterized as a glucose sensor
and not a transporter. Members of this family are
important in human physiology and disease.
Length = 455
Score = 34.0 bits (79), Expect = 0.002
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
D I+++ L++ IG + K +S+D+ L S+G +AL+LAA+
Sbjct: 2 DLIIVIVYLLILLGIGLYSRK---KVKSSEDYFLAGRSLGPFVLALTLAATN 50
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier
5 (SLC5) transporter family.
Length = 472
Score = 31.0 bits (71), Expect = 0.020
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 19 IVLLTMLVVSCAIGFFVGMCGEKQTTSDDFL----LGSSSMGTLPMALSLAAS 67
+ ++ LV+ IGF+ K+ S DFL +G SMG +A++L A+
Sbjct: 3 LPIIIYLVILLGIGFYARR--SKKRRSGDFLEEYFIGGRSMGGFVLAMTLVAT 53
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 30.8 bits (70), Expect = 0.028
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 19 IVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
+ L+ LVV I + K + +++ LG+ SMG + +A++ A+
Sbjct: 5 LPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTAT 53
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports
biotin, pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 30.2 bits (69), Expect = 0.039
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
F I D +VL+ L+ IG + +K +++D+ LG + LS+ A+
Sbjct: 1 FGILDLLVLVLYLLAMLGIGLYF---SKKNKSTEDYFLGGGRIPGWAAGLSIFATM 53
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1
and related proteins; solute binding domain. This
subfamily includes the solute-binding domain of SGLT
proteins that cotransport Na+ with various solutes. Its
members include: the human glucose (SGLT1, -2, -4, -5
), chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 30.3 bits (69), Expect = 0.043
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
D +V++ V+ A+G + MC + T + L SM P+ SL AS
Sbjct: 1 DIVVIVLYFVLVLAVGLWS-MCRTNRGTVSGYFLAGRSMVWWPVGASLFAS 50
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 30.2 bits (69), Expect = 0.049
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 19 IVLLTMLVVSCAIGFFVGMCGEKQTTSDDFL----LGSSSMGTLPMALSLAAS 67
+ L+ LV+ I + ++ + DFL LG+ SMG +A++L A+
Sbjct: 7 LPLVIYLVLVFGISVYAY----RKRQAGDFLNEYFLGNRSMGGFVLAMTLIAT 55
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports
biotin, pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 479
Score = 29.1 bits (66), Expect = 0.12
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
D V++ L+ +G ++ +Q ++ D+ LG SM + LS+ A+
Sbjct: 1 DLAVIVLYLLGLALLGLWLS---GRQKSTADYFLGGRSMPWWAVCLSIVAT 48
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter. This family
consists of the sodium/proline symporter (proline
permease) from a number of Gram-negative and
Gram-positive bacteria and from the archaeal genus
Methanosarcina. Using the related pantothenate permease
as an outgroup, candidate sequences from
Bifidobacterium longum and several from archaea are
found to be outside the clade defined by known proline
permeases. These sequences, scoring between 570 and
-40, define the range between trusted and noise cutoff
scores [Transport and binding proteins, Amino acids,
peptides and amines].
Length = 487
Score = 28.5 bits (64), Expect = 0.17
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 15 IPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
I L++ IGF+ +K T D++LG S+G ALS AS
Sbjct: 1 TEILITFGVYLIIMLLIGFYAY---KKTTNLSDYVLGGRSLGPFVTALSAGAS 50
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and
related proteins; solute-binding domain. Human SMIT is
a high-affinity myo-inositol transporter, and is
expressed in brain, heart, kidney, and lung. Inhibition
of myo-inositol uptake, through down-regulation of
SMIT, may be a common mechanism of action of mood
stabilizers, including lithium, carbamazepine, and
valproate. SMIT is encoded by the SLC5A3 gene, which is
a candidate gene for pathogenesis of nervous system
dysfunction in Down syndrome (DS). The SNP, 21q22 near
SLC5A3-MRPS6-KCNE2, has been associated with coronary
heart disease, cardiovascular disease, and myocardial
infarction. SMIT may also be involved in the
pathogeneisis of congenital cataract. SMIT also plays
roles in osteogenesis, bone formation, and bone mineral
density determination. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 600
Score = 27.4 bits (61), Expect = 0.40
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
D IV++ ++ AIG F M + T + L SM LP+ SL S
Sbjct: 1 DIIVIVLYFILVLAIGIF-AMWKSNRGTVSGYFLAGRSMTWLPVGASLFVS 50
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional.
Length = 502
Score = 25.4 bits (55), Expect = 2.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 24 MLVVSCAIGF---FVGMCGEKQTTS-DDFLLGSSSMGTLPMALSLAAS 67
MLV C F +G + T + DD++LG S+G ALS AS
Sbjct: 7 MLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGAS 54
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or
solute sodium symporter family) is a family of proteins
that co-transports Na+ with sugars, amino acids,
inorganic ions or vitamins. Prokaryotic members of this
family include Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. One
member of the SLC5 family, human SGLT3, has been
characterized as a glucose sensor and not a
transporter. This subfamily belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 495
Score = 25.2 bits (56), Expect = 2.5
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLP--MA-LSLAASQ 68
D++V+ ++ IG + ++ DF LG LP +A LS+ A+
Sbjct: 2 DWLVIALYFLLMLGIGLY--FSKRASKSTSDFFLGG---RNLPWWLAGLSMFATT 51
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or
solute sodium symporter family) is a family of proteins
that co-transports Na+ with sugars, amino acids,
inorganic ions or vitamins. Prokaryotic members of this
family include Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. One
member of the SLC5 family, human SGLT3, has been
characterized as a glucose sensor and not a
transporter. This subfamily belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 495
Score = 24.9 bits (55), Expect = 4.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
DY+++ IGF++ K TS DF L S+ L+ A+
Sbjct: 2 DYLIVAVYFAFVLGIGFYLK---RKVKTSSDFFLSGRSLPAWITGLAFVAA 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.399
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,255,385
Number of extensions: 233365
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 29
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)