RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15007
         (68 letters)



>2xq2_A Sodium/glucose cotransporter; transport protein, inverted
          repeats, LEUT-fold, galactose; 2.73A {Vibrio
          parahaemolyticus} PDB: 2xq2_B 2kpe_A
          Length = 593

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 8  GLDNHFTIPDYIVLLTMLVVSCAIGFFVG-MCGEKQTTSDDFLLGSSSMGTLPMALSLAA 66
           +++  +  D +V    + +   +G +V       Q +++D+ L   S+    +  SL A
Sbjct: 3  NIEHGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIA 62

Query: 67 S 67
          +
Sbjct: 63 A 63


>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription,
           epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A
           3u86_A 3u88_A*
          Length = 550

 Score = 25.9 bits (56), Expect = 1.0
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 35  VGMCGEKQTTSDDFLLGSS 53
           V M  +K +T  D+ L   
Sbjct: 525 VQMKKQKVSTPSDYTLSFL 543


>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
           5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
           PDB: 3ss9_X* 3r0x_A* 3r0z_A
          Length = 442

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 5   LEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCG 39
           +E  LD  +T+ D  +   +  ++   G  +    
Sbjct: 353 MERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSA 387


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 23.8 bits (52), Expect = 6.0
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 15  IPDYIVLLTMLVVSCAIGFF 34
             D+ V+  +L+++  +GF 
Sbjct: 141 WVDFGVICGLLLLNAVVGFV 160


>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
           ATP-binding, hydrogen ION transport, hydrolase, ION
           transport; HET: ACP; 3.60A {Arabidopsis thaliana}
          Length = 885

 Score = 23.8 bits (52), Expect = 6.5
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 15  IPDYIVLLTMLVVSCAIGFF 34
             D++ ++ +LV++  I F 
Sbjct: 93  WQDFVGIICLLVINSTISFI 112


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 953,900
Number of extensions: 41216
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 5
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)