BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15010
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With
          Udp And Ea2
 pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
 pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
          Length = 501

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/87 (55%), Positives = 60/87 (68%), Gaps = 2/87 (2%)

Query: 10 SNKVDVRY--FDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHA 67
          S+ + VR+  F++ AY+    +R GQDPY  NK+NQ  SD    +R +PDTRH  C R  
Sbjct: 1  SDALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQ 60

Query: 68 LPRDLPATSVIITFHNEARSALLRSVV 94
             DLPATSV+ITFHNEARSALLR+VV
Sbjct: 61 WRVDLPATSVVITFHNEARSALLRTVV 87


>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%)

Query: 36  YESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 93
           Y  N +N   SD    NR +PD RHP C        LP TS+II FHNE  S+LLR+V
Sbjct: 75  YRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTV 132


>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide
          Alpha-N- Acetylgalactosaminyltransferase-T1
          Length = 472

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 30/49 (61%)

Query: 45 ASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 93
          AS+    NR +PD R   C     P +LP TSV+I FHNEA S LLR+V
Sbjct: 1  ASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTV 49


>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
           Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
           From Brucella Melitensis
          Length = 416

 Score = 25.8 bits (55), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 15  VRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNR 53
           VRY+D S  L+ G ++P     E  K +   S + PS++
Sbjct: 182 VRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSK 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,838,791
Number of Sequences: 62578
Number of extensions: 105181
Number of successful extensions: 129
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 5
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)