Query psy15010
Match_columns 94
No_of_seqs 106 out of 566
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 18:07:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3737|consensus 99.9 1.8E-24 3.9E-29 178.1 2.1 80 15-94 97-176 (603)
2 KOG3738|consensus 99.9 8.2E-23 1.8E-27 168.2 3.6 78 17-94 68-145 (559)
3 KOG3736|consensus 99.9 1.8E-22 3.9E-27 169.7 2.8 73 22-94 90-163 (578)
4 TIGR03469 HonB hopene-associat 79.7 1.1 2.4E-05 35.4 1.6 23 69-92 36-58 (384)
5 TIGR03111 glyc2_xrt_Gpos1 puta 74.7 2 4.3E-05 34.7 1.8 23 70-93 46-68 (439)
6 cd06439 CESA_like_1 CESA_like_ 70.5 2.5 5.5E-05 30.0 1.4 22 70-92 26-47 (251)
7 TIGR03030 CelA cellulose synth 70.2 2.3 4.9E-05 36.9 1.2 24 69-92 127-150 (713)
8 PRK11498 bcsA cellulose syntha 61.6 4.8 0.0001 36.3 1.6 24 70-93 257-280 (852)
9 TIGR03472 HpnI hopanoid biosyn 55.8 8.8 0.00019 30.1 2.1 17 70-86 38-54 (373)
10 COG1215 Glycosyltransferases, 55.3 6.9 0.00015 30.3 1.4 22 72-93 53-74 (439)
11 PRK11204 N-glycosyltransferase 50.7 9.6 0.00021 29.9 1.5 22 70-92 51-72 (420)
12 PRK14583 hmsR N-glycosyltransf 46.1 13 0.00029 29.9 1.7 21 71-92 73-93 (444)
13 PRK13915 putative glucosyl-3-p 41.6 15 0.00033 28.6 1.3 17 71-87 29-45 (306)
14 PTZ00260 dolichyl-phosphate be 41.1 22 0.00047 27.9 2.2 18 69-86 66-83 (333)
15 KOG4387|consensus 30.3 35 0.00076 26.0 1.7 24 71-94 131-156 (191)
16 COG4038 Predicted membrane pro 21.9 27 0.00059 23.3 -0.2 30 56-87 26-57 (87)
17 COG3455 Type VI protein secret 20.3 58 0.0012 25.8 1.3 16 72-87 118-133 (262)
18 PRK14716 bacteriophage N4 adso 20.2 73 0.0016 27.0 1.9 17 69-85 62-78 (504)
No 1
>KOG3737|consensus
Probab=99.89 E-value=1.8e-24 Score=178.13 Aligned_cols=80 Identities=31% Similarity=0.421 Sum_probs=74.1
Q ss_pred ccCCCcccccCccccCCCCCCccCCCcchhhccccCCCCCCCCCCCcccccccCCCCCCCceEEEEeecCcchhhhcccC
Q psy15010 15 VRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV 94 (94)
Q Consensus 15 w~~~~~~~~l~~~~~~~~~~~~~~~~FN~~~Sd~I~l~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~StLLRTv~ 94 (94)
.++-+++..|++++....+..-+++|||+++||+||++|+++|+|+..|+...|+.+||++||||+||||.||||+||||
T Consensus 97 PGE~gkp~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVH 176 (603)
T KOG3737|consen 97 PGEKGKPLVLGPEFKQAIQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVH 176 (603)
T ss_pred CCcCCcccccChhHHHHHHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcccCCcceEEEEEecCccHHHHHHHH
Confidence 56667777888888877777888999999999999999999999999999999999999999999999999999999997
No 2
>KOG3738|consensus
Probab=99.86 E-value=8.2e-23 Score=168.16 Aligned_cols=78 Identities=56% Similarity=0.916 Sum_probs=76.4
Q ss_pred CCCcccccCccccCCCCCCccCCCcchhhccccCCCCCCCCCCCcccccccCCCCCCCceEEEEeecCcchhhhcccC
Q psy15010 17 YFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV 94 (94)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~FN~~~Sd~I~l~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~StLLRTv~ 94 (94)
+|+..+||+++....+++.|+.|.||+..||.+..+|.+||+||++|....|..+||.|||||+|||||.|+|||||+
T Consensus 68 ~fd~~~y~~~~~~~~Ged~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~ 145 (559)
T KOG3738|consen 68 TFDVEAYLNGGKWHQGEDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVV 145 (559)
T ss_pred CCCchhhhcCCCccCCCchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEEeccHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999973
No 3
>KOG3736|consensus
Probab=99.85 E-value=1.8e-22 Score=169.69 Aligned_cols=73 Identities=44% Similarity=0.666 Sum_probs=65.2
Q ss_pred cccCccccCCCCCCccCCCcchhhccccCCCCCCCCCCCccccc-ccCCCCCCCceEEEEeecCcchhhhcccC
Q psy15010 22 AYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTR-HALPRDLPATSVIITFHNEARSALLRSVV 94 (94)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~FN~~~Sd~I~l~R~lpD~R~~~C~~-~~y~~~LP~aSVII~FhNEa~StLLRTv~ 94 (94)
..++..+.+.++.+|++++||+++||+|+++|++||+|++.|+. ..|...||++||||+||||||||||||||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~ 163 (578)
T KOG3736|consen 90 VKLPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVH 163 (578)
T ss_pred ccCCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCceEEEEecCCCcchhheEE
Confidence 44556667778888999999999999999999999999999988 45556799999999999999999999997
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=79.73 E-value=1.1 Score=35.43 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.8
Q ss_pred CCCCCCceEEEEeecCcchhhhcc
Q psy15010 69 PRDLPATSVIITFHNEARSALLRS 92 (94)
Q Consensus 69 ~~~LP~aSVII~FhNEa~StLLRT 92 (94)
+...|++||||+.|||+ ..|-|+
T Consensus 36 ~~~~p~VSVIIpa~Ne~-~~L~~~ 58 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEA-DVIGEC 58 (384)
T ss_pred CCCCCCEEEEEecCCcH-hHHHHH
Confidence 34689999999999998 445444
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=74.66 E-value=2 Score=34.71 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCCCCceEEEEeecCcchhhhccc
Q psy15010 70 RDLPATSVIITFHNEARSALLRSV 93 (94)
Q Consensus 70 ~~LP~aSVII~FhNEa~StLLRTv 93 (94)
..+|++||||.-|||+ .+|-+++
T Consensus 46 ~~~P~vsVIIP~yNe~-~~l~~~l 68 (439)
T TIGR03111 46 GKLPDITIIIPVYNSE-DTLFNCI 68 (439)
T ss_pred CCCCCEEEEEEeCCCh-HHHHHHH
Confidence 4589999999999998 6665543
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=70.48 E-value=2.5 Score=30.05 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCCCCceEEEEeecCcchhhhcc
Q psy15010 70 RDLPATSVIITFHNEARSALLRS 92 (94)
Q Consensus 70 ~~LP~aSVII~FhNEa~StLLRT 92 (94)
...|.+||||..|||. +.|.++
T Consensus 26 ~~~~~isVvip~~n~~-~~l~~~ 47 (251)
T cd06439 26 AYLPTVTIIIPAYNEE-AVIEAK 47 (251)
T ss_pred CCCCEEEEEEecCCcH-HHHHHH
Confidence 4588999999999996 444443
No 7
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=70.20 E-value=2.3 Score=36.92 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.0
Q ss_pred CCCCCCceEEEEeecCcchhhhcc
Q psy15010 69 PRDLPATSVIITFHNEARSALLRS 92 (94)
Q Consensus 69 ~~~LP~aSVII~FhNEa~StLLRT 92 (94)
+..+|++||||.-|||+...+-+|
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~t 150 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATT 150 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHH
Confidence 356899999999999987655444
No 8
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=61.61 E-value=4.8 Score=36.33 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=18.8
Q ss_pred CCCCCceEEEEeecCcchhhhccc
Q psy15010 70 RDLPATSVIITFHNEARSALLRSV 93 (94)
Q Consensus 70 ~~LP~aSVII~FhNEa~StLLRTv 93 (94)
...|++||||+-|||....+-+|+
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI 280 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTI 280 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHH
Confidence 357999999999999876654443
No 9
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=55.84 E-value=8.8 Score=30.13 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.6
Q ss_pred CCCCCceEEEEeecCcc
Q psy15010 70 RDLPATSVIITFHNEAR 86 (94)
Q Consensus 70 ~~LP~aSVII~FhNEa~ 86 (94)
...|.+||||+-|||+-
T Consensus 38 ~~~p~VSViiP~~nee~ 54 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEP 54 (373)
T ss_pred CCCCCeEEEEECCCCCh
Confidence 44799999999999964
No 10
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=55.32 E-value=6.9 Score=30.30 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=18.4
Q ss_pred CCCceEEEEeecCcchhhhccc
Q psy15010 72 LPATSVIITFHNEARSALLRSV 93 (94)
Q Consensus 72 LP~aSVII~FhNEa~StLLRTv 93 (94)
+|.+||||.-|||...++-+|+
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l 74 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETL 74 (439)
T ss_pred CCceEEEEecCCCchhhHHHHH
Confidence 7999999999999986665553
No 11
>PRK11204 N-glycosyltransferase; Provisional
Probab=50.73 E-value=9.6 Score=29.89 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=16.5
Q ss_pred CCCCCceEEEEeecCcchhhhcc
Q psy15010 70 RDLPATSVIITFHNEARSALLRS 92 (94)
Q Consensus 70 ~~LP~aSVII~FhNEa~StLLRT 92 (94)
...|.+||||+-|||. ..+-++
T Consensus 51 ~~~p~vsViIp~yne~-~~i~~~ 72 (420)
T PRK11204 51 KEYPGVSILVPCYNEG-ENVEET 72 (420)
T ss_pred CCCCCEEEEEecCCCH-HHHHHH
Confidence 3578999999999995 444433
No 12
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=46.14 E-value=13 Score=29.92 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=16.3
Q ss_pred CCCCceEEEEeecCcchhhhcc
Q psy15010 71 DLPATSVIITFHNEARSALLRS 92 (94)
Q Consensus 71 ~LP~aSVII~FhNEa~StLLRT 92 (94)
..|.+||||.-|||+-. +.+|
T Consensus 73 ~~p~vsViIP~yNE~~~-i~~~ 93 (444)
T PRK14583 73 GHPLVSILVPCFNEGLN-ARET 93 (444)
T ss_pred CCCcEEEEEEeCCCHHH-HHHH
Confidence 47999999999999743 4443
No 13
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=41.63 E-value=15 Score=28.56 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.4
Q ss_pred CCCCceEEEEeecCcch
Q psy15010 71 DLPATSVIITFHNEARS 87 (94)
Q Consensus 71 ~LP~aSVII~FhNEa~S 87 (94)
.-|.+||||..|||+-.
T Consensus 29 ~~~~vSVVIPayNee~~ 45 (306)
T PRK13915 29 AGRTVSVVLPALNEEET 45 (306)
T ss_pred CCCCEEEEEecCCcHHH
Confidence 46899999999999743
No 14
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=41.13 E-value=22 Score=27.88 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=15.3
Q ss_pred CCCCCCceEEEEeecCcc
Q psy15010 69 PRDLPATSVIITFHNEAR 86 (94)
Q Consensus 69 ~~~LP~aSVII~FhNEa~ 86 (94)
....|..||||..|||+-
T Consensus 66 ~~~~~~isVVIP~yNe~~ 83 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEED 83 (333)
T ss_pred CCCCeEEEEEEeeCCCHH
Confidence 456889999999999975
No 15
>KOG4387|consensus
Probab=30.35 E-value=35 Score=26.05 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=19.3
Q ss_pred CCCCceEEEEee--cCcchhhhcccC
Q psy15010 71 DLPATSVIITFH--NEARSALLRSVV 94 (94)
Q Consensus 71 ~LP~aSVII~Fh--NEa~StLLRTv~ 94 (94)
.|---+|+|||+ +|-...|+||.+
T Consensus 131 kl~~d~Vfi~F~K~R~dr~~Llrtfs 156 (191)
T KOG4387|consen 131 KLHVDKVFICFDKNREDRAALLRTFS 156 (191)
T ss_pred hhccceEEEEEecCccChHhhhhheh
Confidence 466678999998 677899999964
No 16
>COG4038 Predicted membrane protein [Function unknown]
Probab=21.94 E-value=27 Score=23.32 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred CCCCCcccccccCCCCCCCceEEEEe--ecCcch
Q psy15010 56 PDTRHPACTRHALPRDLPATSVIITF--HNEARS 87 (94)
Q Consensus 56 pD~R~~~C~~~~y~~~LP~aSVII~F--hNEa~S 87 (94)
|..|+|-.+. ....+|++-|-++| |||+..
T Consensus 26 p~~~dpiv~~--LN~EiPtvGVSLIFLaYnh~LA 57 (87)
T COG4038 26 PARSDPVVKS--LNLELPTVGVSLIFLAYNHLLA 57 (87)
T ss_pred CcccCcHHHH--hccccccceeeehHHHHHHHHH
Confidence 4455555443 34579998888888 899764
No 17
>COG3455 Type VI protein secretion system component VasF [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.26 E-value=58 Score=25.79 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=12.9
Q ss_pred CCCceEEEEeecCcch
Q psy15010 72 LPATSVIITFHNEARS 87 (94)
Q Consensus 72 LP~aSVII~FhNEa~S 87 (94)
=+.-|.++.||||+|.
T Consensus 118 W~~~sLlv~fhne~~g 133 (262)
T COG3455 118 WARQSLLVHFHNEAWG 133 (262)
T ss_pred cccCCeeeeeeccccc
Confidence 3457889999999984
No 18
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=20.15 E-value=73 Score=27.04 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=14.9
Q ss_pred CCCCCCceEEEEeecCc
Q psy15010 69 PRDLPATSVIITFHNEA 85 (94)
Q Consensus 69 ~~~LP~aSVII~FhNEa 85 (94)
..+.|..+|||+-|||+
T Consensus 62 ~~~~p~vaIlIPA~NE~ 78 (504)
T PRK14716 62 SVPEKRIAIFVPAWREA 78 (504)
T ss_pred cCCCCceEEEEeccCch
Confidence 34689999999999997
Done!