Query psy15010
Match_columns 94
No_of_seqs 106 out of 566
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:08:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ffu_A Ppgalnact-2, polypeptid 99.8 1.3E-20 4.5E-25 148.4 4.8 85 9-93 2-86 (501)
2 2d7i_A Polypeptide N-acetylgal 99.7 2.3E-17 7.9E-22 133.4 3.8 73 19-93 60-132 (570)
3 1xhb_A Polypeptide N-acetylgal 99.5 2.5E-14 8.5E-19 111.2 3.9 49 45-93 1-49 (472)
4 2z86_A Chondroitin synthase; G 96.2 0.00036 1.2E-08 55.6 -1.8 69 23-92 21-111 (625)
5 2fy7_A Beta-1,4-galactosyltran 78.5 1 3.4E-05 33.6 2.1 14 72-85 64-77 (287)
6 3f1y_A Mannosyl-3-phosphoglyce 65.0 2.6 9E-05 32.6 1.7 14 72-85 93-106 (387)
7 3ckj_A Putative uncharacterize 64.3 2.9 9.8E-05 30.7 1.7 15 71-85 46-60 (329)
8 2z86_A Chondroitin synthase; G 56.6 7.9 0.00027 30.5 3.1 22 70-92 372-393 (625)
9 4hg6_A Cellulose synthase subu 53.8 5.2 0.00018 33.6 1.7 21 69-89 136-156 (802)
10 2nxv_A ATP synthase subunits r 31.8 25 0.00087 24.5 2.2 27 63-91 5-32 (249)
11 4hbz_A Putative phosphohistidi 23.1 52 0.0018 22.6 2.5 19 71-89 153-171 (186)
No 1
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.81 E-value=1.3e-20 Score=148.41 Aligned_cols=85 Identities=54% Similarity=0.831 Sum_probs=79.5
Q ss_pred CCCCCCccCCCcccccCccccCCCCCCccCCCcchhhccccCCCCCCCCCCCcccccccCCCCCCCceEEEEeecCcchh
Q psy15010 9 NSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSA 88 (94)
Q Consensus 9 ~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~FN~~~Sd~I~l~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~St 88 (94)
.+.+++|..|+..++|++++.+..+++|++++||+++||+|+++|++||+|++.|+...|+.++|.+||||++|||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~i~~~r~~~d~r~~~~~~~~~~~~~p~vSVIIp~yN~~~~~ 81 (501)
T 2ffu_A 2 DALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSA 81 (501)
T ss_dssp ---CBCGGGSCHHHHHHTTCCCTTSCTTTTTSSCHHHHHHSCTTCCCCCCSCGGGGGCCCCSSCCCEEEEEEESSCCHHH
T ss_pred CcccCCHhhCCcccccChhhhhhhhhhHHhcCcCHHHHcccCCCCcCCCCChhHhccccCCcCCCCEEEEEEeCcCcHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhccc
Q psy15010 89 LLRSV 93 (94)
Q Consensus 89 LLRTv 93 (94)
|.|+|
T Consensus 82 L~~~l 86 (501)
T 2ffu_A 82 LLRTV 86 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 2
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.66 E-value=2.3e-17 Score=133.38 Aligned_cols=73 Identities=38% Similarity=0.625 Sum_probs=64.0
Q ss_pred CcccccCccccCCCCCCccCCCcchhhccccCCCCCCCCCCCcccccccCCCCCCCceEEEEeecCcchhhhccc
Q psy15010 19 DESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 93 (94)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~FN~~~Sd~I~l~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~StLLRTv 93 (94)
|.++.|++. ++.++.|++++||+++||+|+|+|.+||+|++.|....|+..+|.+||||++|||+|++|.|+|
T Consensus 60 g~~~~~~~~--~~~~~~~~~~~~n~~~sd~i~l~R~~~d~r~~~~~~~~~~~~~P~vSVIIp~yNe~~~~L~~~L 132 (570)
T 2d7i_A 60 GRPYPMTDA--ERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTV 132 (570)
T ss_dssp GCCCCCCTT--TTSSHHHHTTSSCHHHHHTSCTTCCCCCCSCGGGGTCCEESSCCCEEEEEEESSCCHHHHHHHH
T ss_pred CCceECCHH--HHHHHHHHHcCCCHHHHhccCCCccCCCCCCccceecccCCCCCCeEEEEEECCCCHHHHHHHH
Confidence 334455533 3357889999999999999999999999999999999999899999999999999999999886
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.46 E-value=2.5e-14 Score=111.18 Aligned_cols=49 Identities=51% Similarity=0.811 Sum_probs=40.6
Q ss_pred hccccCCCCCCCCCCCcccccccCCCCCCCceEEEEeecCcchhhhccc
Q psy15010 45 ASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 93 (94)
Q Consensus 45 ~Sd~I~l~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~StLLRTv 93 (94)
+||+|+|+|+|||+|++.|+.+.|+.++|.+||||++|||+|++|.|+|
T Consensus 1 ~s~~~~~~r~~~d~r~~~c~~~~~~~~~p~vSVIIp~yN~~~~~l~~~l 49 (472)
T 1xhb_A 1 ASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTV 49 (472)
T ss_dssp -------CCCCCCCSCGGGGTCCCCSCCCCEEEEEEESSCCHHHHHHHH
T ss_pred CCccccCCCCCCCCCChhhccCcCCcCCCCeEEEEEeCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999999999998876
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=96.23 E-value=0.00036 Score=55.63 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=41.8
Q ss_pred ccCccccCCCCCCcc----CCCcchhhcc------ccCCCCCCCCCCCccccc------------ccCCCCCCCceEEEE
Q psy15010 23 YLEKGALRPGQDPYE----SNKYNQAASD------NTPSNRDVPDTRHPACTR------------HALPRDLPATSVIIT 80 (94)
Q Consensus 23 ~l~~~~~~~~~~~~~----~~~FN~~~Sd------~I~l~R~lpD~R~~~C~~------------~~y~~~LP~aSVII~ 80 (94)
.|+++|+....+.++ +...|+.+++ +.+++|..+......|.- ...+..+|.+||||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~vsviIp 100 (625)
T 2z86_A 21 SLNEVEKNEIISKYREITAKKSERAELKEVEPIPLDWPSDLTLPPLPESTNDYVWAGKRKELDDYPRKQLIIDGLSIVIP 100 (625)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCCEECCCCCCCSSCTTCCTTCCCCCCCSSTTCHHHHHTCCCC-------CCCCCEEEEEE
T ss_pred cccchhHHHHHHHHHHHhhhccccccccccCCCCCCCcccCCCCCCCCCccccchhhhcccccCCCcccccCCcEEEEEe
Confidence 355555444333333 3336777666 778888876666655531 112346899999999
Q ss_pred eecCcchhhhcc
Q psy15010 81 FHNEARSALLRS 92 (94)
Q Consensus 81 FhNEa~StLLRT 92 (94)
.|||+ ..|.++
T Consensus 101 ~~n~~-~~l~~~ 111 (625)
T 2z86_A 101 TYNRA-KILAIT 111 (625)
T ss_dssp ESSCH-HHHHHH
T ss_pred cCCcH-HHHHHH
Confidence 99995 555554
No 5
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=78.54 E-value=1 Score=33.59 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=12.6
Q ss_pred CCCceEEEEeecCc
Q psy15010 72 LPATSVIITFHNEA 85 (94)
Q Consensus 72 LP~aSVII~FhNEa 85 (94)
.|.+||||++||++
T Consensus 64 ~~~VSIIIP~yN~~ 77 (287)
T 2fy7_A 64 PHKVAIIIPFRNRQ 77 (287)
T ss_dssp SCEEEEEEEESSCH
T ss_pred CCcEEEEEeeCCCH
Confidence 58999999999984
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=65.04 E-value=2.6 Score=32.57 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=13.0
Q ss_pred CCCceEEEEeecCc
Q psy15010 72 LPATSVIITFHNEA 85 (94)
Q Consensus 72 LP~aSVII~FhNEa 85 (94)
.|.+||||+.|||+
T Consensus 93 ~p~vSVVIP~yNe~ 106 (387)
T 3f1y_A 93 GLTVSAVLPSRNVA 106 (387)
T ss_dssp TCCEEEEEEESSCT
T ss_pred CCeEEEEEEcCCCH
Confidence 58999999999996
No 7
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=64.28 E-value=2.9 Score=30.74 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=13.4
Q ss_pred CCCCceEEEEeecCc
Q psy15010 71 DLPATSVIITFHNEA 85 (94)
Q Consensus 71 ~LP~aSVII~FhNEa 85 (94)
..|.+||||+.|||+
T Consensus 46 ~~~~vSViIp~yN~~ 60 (329)
T 3ckj_A 46 AGRTISVVLPALDEE 60 (329)
T ss_dssp TTCCEEEEEEESSCT
T ss_pred cCCcEEEEEeeCCCH
Confidence 468999999999986
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=56.65 E-value=7.9 Score=30.53 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.4
Q ss_pred CCCCCceEEEEeecCcchhhhcc
Q psy15010 70 RDLPATSVIITFHNEARSALLRS 92 (94)
Q Consensus 70 ~~LP~aSVII~FhNEa~StLLRT 92 (94)
...|.+||||+-||++ ..|.++
T Consensus 372 ~~~~~vsiii~~yn~~-~~l~~~ 393 (625)
T 2z86_A 372 KRVPLVSIYIPAYNCS-KYIVRC 393 (625)
T ss_dssp CSSCSEEEEEEESSCT-TTHHHH
T ss_pred ccCCeEEEEEeCCCCH-HHHHHH
Confidence 3578999999999985 444443
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=53.84 E-value=5.2 Score=33.58 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.3
Q ss_pred CCCCCCceEEEEeecCcchhh
Q psy15010 69 PRDLPATSVIITFHNEARSAL 89 (94)
Q Consensus 69 ~~~LP~aSVII~FhNEa~StL 89 (94)
+..+|.+||||+-|||+-..|
T Consensus 136 ~~~~P~VSViIPtyNe~~~lL 156 (802)
T 4hg6_A 136 PEELPTVDILVPSYNEPADML 156 (802)
T ss_dssp TTTCCCEEEEEECTTCCHHHH
T ss_pred ccCCCcEEEEEEECCCCHHHH
Confidence 456899999999999986543
No 10
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=31.82 E-value=25 Score=24.47 Aligned_cols=27 Identities=15% Similarity=-0.114 Sum_probs=15.2
Q ss_pred cccccCC-CCCCCceEEEEeecCcchhhhc
Q psy15010 63 CTRHALP-RDLPATSVIITFHNEARSALLR 91 (94)
Q Consensus 63 C~~~~y~-~~LP~aSVII~FhNEa~StLLR 91 (94)
|....+. .+.|.+|||++ ||+ ...|.+
T Consensus 5 ~~~~~~~~~~~~~iSII~~-yN~-~~~l~~ 32 (249)
T 2nxv_A 5 PTYVQDKDESTLMFSVCSL-VRD-QAKYDR 32 (249)
T ss_dssp CEEECSCCCCCCSEEEEEE-ESC-HHHHHH
T ss_pred cccccCccCCcceEEEEEe-eCC-HHHHHH
Confidence 3344443 23568898765 887 344443
No 11
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=23.13 E-value=52 Score=22.60 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.2
Q ss_pred CCCCceEEEEeecCcchhh
Q psy15010 71 DLPATSVIITFHNEARSAL 89 (94)
Q Consensus 71 ~LP~aSVII~FhNEa~StL 89 (94)
.+|+++|.++++.+.|+-|
T Consensus 153 ~fpTa~~avl~~~~~W~~l 171 (186)
T 4hbz_A 153 HFAAGTFAVLSTTGAWADL 171 (186)
T ss_dssp CCCTTCEEEEEESSCGGGH
T ss_pred CCCCeEEEEEECCCCHHHC
Confidence 5899999998888889865
Done!