RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15010
         (94 letters)



>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
          mucin-type O-linked glycans.  UDP-GalNAc: polypeptide
          alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
          initiate the formation of mucin-type, O-linked glycans
          by catalyzing the transfer of
          alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
          hydroxyl groups of Ser or Thr residues of core proteins
          to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
          enzymes are type II membrane proteins with a GT-A type
          catalytic domain and a lectin domain located on the
          lumen side of the Golgi apparatus. In human, there are
          15 isozymes of pp-GalNAc-Ts, representing the largest
          of all glycosyltransferase families. Each isozyme has
          unique but partially redundant substrate specificity
          for glycosylation sites on acceptor proteins.
          Length = 299

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 14/18 (77%), Positives = 15/18 (83%)

Query: 76 SVIITFHNEARSALLRSV 93
          SVII FHNEA S LLR+V
Sbjct: 1  SVIIIFHNEALSTLLRTV 18


>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
           Provisional.
          Length = 606

 Score = 29.0 bits (65), Expect = 0.29
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 15  VRYFDESAY---LEKGALRPGQDPYESNKYNQAASDNTPSN 52
           ++Y+++  +   L      P Q+PY+    N  AS+ T + 
Sbjct: 548 IKYYEDKFFTSRLLPPTFVPTQEPYDPRANNNEASEETETI 588


>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
          Length = 542

 Score = 27.8 bits (63), Expect = 0.63
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 78 IITFHNEARSALLRSV 93
          II F  EAR AL R V
Sbjct: 4  IIKFDEEARRALERGV 19


>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
          involved in productive folding of proteins. They share
          a common general morphology, a double toroid of 2
          stacked rings, each composed of 7-9 subunits. The
          symmetry of type I is seven-fold and they are found in
          eubacteria (GroEL) and in organelles of eubacterial
          descent (hsp60 and RBP). With the aid of cochaperonin
          GroES, GroEL encapsulates non-native substrate proteins
          inside the cavity of the GroEL-ES complex and promotes
          folding by using energy derived from ATP hydrolysis.
          Length = 520

 Score = 25.9 bits (58), Expect = 3.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 78 IITFHNEARSALLRSV 93
           I F  EAR ALLR V
Sbjct: 2  DIKFGEEARKALLRGV 17


>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK
          protein.  Phosphoribosylaminoimidazole carboxylase is a
          fusion protein in plants and fungi, but consists of two
          non-interacting proteins in bacteria, PurK and PurE.
          This model represents PurK, N5-carboxyaminoimidazole
          ribonucleotide synthetase, which hydrolyzes ATP and
          converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR.
          In the presence of high concentrations of bicarbonate,
          PurE is reported able to convert AIR to CAIR directly
          and without ATP [Purines, pyrimidines, nucleosides, and
          nucleotides, Purine ribonucleotide biosynthesis].
          Length = 352

 Score = 25.4 bits (56), Expect = 4.8
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 43 QAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNE 84
               N+P+ +             A  R+L  +  +ITF  E
Sbjct: 28 LDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFE 69


>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
          synthase (CESA) superfamily.  This is a subfamily of
          cellulose synthase (CESA) superfamily.  CESA
          superfamily includes a wide variety of
          glycosyltransferase family 2 enzymes that share the
          common characteristic of catalyzing the elongation of
          polysaccharide chains.  The members of the superfamily
          include cellulose synthase catalytic subunit, chitin
          synthase, glucan biosynthesis protein and other
          families of CESA-like proteins.
          Length = 251

 Score = 24.9 bits (55), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 69 PRDLPATSVIITFHNEAR 86
          P  LP  ++II  +NE  
Sbjct: 25 PAYLPTVTIIIPAYNEEA 42


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.127    0.367 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,569,444
Number of extensions: 347644
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 12
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)