RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15010
(94 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase;
HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 106 bits (265), Expect = 8e-29
Identities = 46/86 (53%), Positives = 58/86 (67%)
Query: 8 TNSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHA 67
+++ KV F++ AY+ +R GQDPY NK+NQ SD +R +PDTRH C R
Sbjct: 1 SDALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQ 60
Query: 68 LPRDLPATSVIITFHNEARSALLRSV 93
DLPATSV+ITFHNEARSALLR+V
Sbjct: 61 WRVDLPATSVVITFHNEARSALLRTV 86
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 76.7 bits (188), Expect = 3e-18
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 45 ASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 93
AS+ NR +PD R C P +LP TSV+I FHNEA S LLR+V
Sbjct: 1 ASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTV 49
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 76.0 bits (186), Expect = 5e-18
Identities = 28/61 (45%), Positives = 33/61 (54%)
Query: 33 QDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRS 92
Y N +N SD NR +PD RHP C LP TS+II FHNE S+LLR+
Sbjct: 72 DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRT 131
Query: 93 V 93
V
Sbjct: 132 V 132
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.67
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 3 KKLDSTNSNKVDVRYFDESA 22
KKL + S K+ Y D+SA
Sbjct: 23 KKLQA--SLKL---YADDSA 37
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.8 bits (60), Expect = 1.2
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 65 RHALPRDLPA------TSVI 78
++ + ++L A TSVI
Sbjct: 364 KNCVVKNLEAVETLGSTSVI 383
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 26.8 bits (60), Expect = 1.2
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 6/20 (30%)
Query: 65 RHALPRDLPA------TSVI 78
++ L ++L A TS I
Sbjct: 359 KNCLVKNLEAVETLGSTSTI 378
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 1.9
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 27/87 (31%)
Query: 12 KVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACT-----RH 66
+ + F E+ YLE G D + A+ N R
Sbjct: 85 NLCLTEF-ENCYLE------GNDI------HALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 67 ALPRDLPATSVIITFHNEARSALLRSV 93
R F ++ SAL R+V
Sbjct: 132 MAKR---------PFDKKSNSALFRAV 149
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 24.5 bits (54), Expect = 6.3
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 6/20 (30%)
Query: 65 RHALPRDLPA------TSVI 78
++A+ R LP+ TSVI
Sbjct: 330 KNAIVRSLPSVETLGCTSVI 349
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 24.4 bits (54), Expect = 7.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 78 IITFHNEARSALLRSV 93
I + EAR L R +
Sbjct: 4 TIAYDEEARRGLERGL 19
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 24.4 bits (54), Expect = 7.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 78 IITFHNEARSALLRSV 93
+ F N+A +LR V
Sbjct: 4 DVKFGNDAGVKMLRGV 19
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10,
folding, ADP, ATP; HET: ADP; 2.80A {Thermus
thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB:
1wf4_a*
Length = 543
Score = 24.4 bits (54), Expect = 7.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 78 IITFHNEARSALLRSV 93
I+ F AR AL R V
Sbjct: 4 ILVFDEAARRALERGV 19
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 24.1 bits (53), Expect = 9.5
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 78 IITFHNEARSALLRSV 93
+ F+++AR +L+ V
Sbjct: 5 EVKFNSDARDRMLKGV 20
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 24.0 bits (53), Expect = 9.9
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 78 IITFHNEARSALLRSV 93
TFH EA +
Sbjct: 90 QYTFHLEATENPGALI 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.367
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,326,425
Number of extensions: 61973
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 14
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)