RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15010
         (94 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
          N-acetylgalactosaminyltransferase 1, N-terminal domain
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 60.0 bits (144), Expect = 8e-13
 Identities = 23/42 (54%), Positives = 27/42 (64%)

Query: 52 NRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 93
          NR +PD R   C     P +LP TSV+I FHNEA S LLR+V
Sbjct: 1  NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTV 42


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
          {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 25.7 bits (56), Expect = 1.00
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 75 TSVIITFHNEARSALLRSV 93
          + V+  F +E    LL +V
Sbjct: 1  SLVVFPFKHEHPEVLLHNV 19


>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
           N-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 422

 Score = 25.0 bits (54), Expect = 1.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 10  SNKVDVRYFDESAYLEKGALRPGQ 33
            ++  +   DE+  +EKG L PG+
Sbjct: 366 GSETGMVKIDETQVIEKGRLGPGE 389


>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
          thermophilus [TaxId: 274]}
          Length = 255

 Score = 24.1 bits (51), Expect = 3.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 78 IITFHNEARSALLRSV 93
          I+ F   AR AL R V
Sbjct: 3  ILVFDEAARRALERGV 18


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
           N-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 430

 Score = 23.8 bits (51), Expect = 3.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 18  FDESAYLEKGALRPGQ 33
             E   +EKG L PGQ
Sbjct: 373 LPEVDIVEKGRLAPGQ 388


>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 310

 Score = 23.7 bits (50), Expect = 4.0
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 24  LEKGALRPGQDPYESNKYNQAASDNTP 50
           LE G    G +  E    +    + TP
Sbjct: 254 LEAGYTLYGNETKELQLLSTDIDEVTP 280


>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
          protein SpsA {Bacillus subtilis [TaxId: 1423]}
          Length = 255

 Score = 23.2 bits (48), Expect = 6.9
 Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 73 PATSVIITFHNEAR--SALLRSV 93
          P  SVI+T +N++   +  + S+
Sbjct: 1  PKVSVIMTSYNKSDYVAKSISSI 23


>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 136

 Score = 22.8 bits (49), Expect = 8.6
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 36  YESNKYNQAASDNTPSNRDVPDTRHPACTRHALPR 70
           Y S K+    S ++   R +   R      H LP 
Sbjct: 94  YRSEKHRLPVSLSSAKQRQLYKNRGFLPLSHFLPM 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.367 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 317,981
Number of extensions: 11505
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 9
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)