BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15011
(334 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|346472733|gb|AEO36211.1| hypothetical protein [Amblyomma maculatum]
Length = 349
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 185/332 (55%), Positives = 216/332 (65%), Gaps = 87/332 (26%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+AWSM++P F KEDNPH L E + F T
Sbjct: 15 ESAWSMRLPAFTKEDNPHGVLCE-------------------------SAFATL------ 43
Query: 62 IIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRK 121
+ +E+YL+ECWPLVK L H I AELDVIEGSMTV TTRK
Sbjct: 44 -----------------FPKYREKYLRECWPLVKKTLAEHGITAELDVIEGSMTVTTTRK 86
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIG 181
WDPYII+KARDMIKLLSRSVPYEQA+RVL+DD+ CDI+KIG LV+N++RFVKRRQRLIG
Sbjct: 87 MWDPYIILKARDMIKLLSRSVPYEQAIRVLEDDVGCDIVKIGRLVRNRERFVKRRQRLIG 146
Query: 182 PNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQG 241
PNG TLK+IELLTNCY+LVQG TV+ALGP+K
Sbjct: 147 PNGTTLKAIELLTNCYVLVQGNTVSALGPYK----------------------------- 177
Query: 242 QTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
GL VR+IVEDTMKNIHP+YNIKALMIKRELAKDP L+NENW+RFLP+FK
Sbjct: 178 ----------GLQHVRKIVEDTMKNIHPVYNIKALMIKRELAKDPNLRNENWDRFLPHFK 227
Query: 302 SKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
++TLSKRK PKK++TK EYTPFPPPQPES+ +
Sbjct: 228 AQTLSKRKKPKKQRTKGEYTPFPPPQPESKMD 259
>gi|340712796|ref|XP_003394941.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
terrestris]
Length = 340
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 187/333 (56%), Positives = 215/333 (64%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP FK EDNPH L+E T+F
Sbjct: 16 VDNAWSLKIPSFKPEDNPHRLLEES---------------------SFATLFPK------ 48
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+E+YLKE WPL++ +LE H IKAELD+IEGSM+V TTR
Sbjct: 49 ---------------------YREQYLKEHWPLIQKSLEEHAIKAELDLIEGSMSVKTTR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDM+KL+SRSVP+EQA+RVLQDDI DIIKI + V+N+++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQDDIGSDIIKISSFVRNREKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GP GCTLKSIELLTNCY++VQGQTVAALGP+KG
Sbjct: 148 GPKGCTLKSIELLTNCYVVVQGQTVAALGPYKG--------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L+QVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP F
Sbjct: 181 ------------LIQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
SK +SKRK PK RK K YTPFPPPQ ES+ +
Sbjct: 229 NSKNISKRKQPKNRKEKKPYTPFPPPQQESKVD 261
>gi|350408959|ref|XP_003488565.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
impatiens]
Length = 340
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 184/333 (55%), Positives = 215/333 (64%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP FK EDNPH L+E T+F
Sbjct: 16 VDNAWSLKIPSFKPEDNPHRLLEES---------------------SFATLFPK------ 48
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+E+YLKE WPL++ +L+ H IKAELD+IEGSM+V TTR
Sbjct: 49 ---------------------YREQYLKEHWPLIQKSLDEHAIKAELDLIEGSMSVKTTR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDM+KL+SRSVP+EQA+RVLQDDI DIIKI + V+N+++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQDDIGSDIIKISSFVRNREKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GP GCTLKSIELLTNCY++VQGQTVAALGP+KG
Sbjct: 148 GPKGCTLKSIELLTNCYVVVQGQTVAALGPYKG--------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L+QVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP F
Sbjct: 181 ------------LIQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
SK +SKRK P+ +K K YTPFPPPQ ES+ +
Sbjct: 229 NSKNISKRKQPRNKKEKKPYTPFPPPQQESKVD 261
>gi|427780601|gb|JAA55752.1| Putative rrna processing protein [Rhipicephalus pulchellus]
Length = 318
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/332 (54%), Positives = 213/332 (64%), Gaps = 87/332 (26%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
+ AWSM +P F KEDNPH + E + F T
Sbjct: 8 DGAWSMPLPAFTKEDNPHGVMCE-------------------------SAFATL------ 36
Query: 62 IIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRK 121
+ +E+YL+ECWPLVK L H + AELDVIEGSMTV TTRK
Sbjct: 37 -----------------FPKYREKYLRECWPLVKKTLSEHGVNAELDVIEGSMTVTTTRK 79
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIG 181
WDPYII+KARDMIKLLSRSVPYEQA+RVL+D + CDI+KIG LV+N++RF+KRRQRL+G
Sbjct: 80 MWDPYIILKARDMIKLLSRSVPYEQAIRVLEDGVGCDIVKIGRLVRNRERFIKRRQRLLG 139
Query: 182 PNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQG 241
PNG TLK+IELLTNCY+LVQG TVAALGP+
Sbjct: 140 PNGTTLKAIELLTNCYVLVQGNTVAALGPY------------------------------ 169
Query: 242 QTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
KGL VR+IVEDTMKNIHP+YNIKALMIKRELAKDPKL+NENW+RFLP+FK
Sbjct: 170 ---------KGLQHVRKIVEDTMKNIHPVYNIKALMIKRELAKDPKLRNENWDRFLPHFK 220
Query: 302 SKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
++TLSKRK PKK++ K EYTPFPPPQPES+ +
Sbjct: 221 AQTLSKRKKPKKQRVKGEYTPFPPPQPESKMD 252
>gi|156550594|ref|XP_001604019.1| PREDICTED: KRR1 small subunit processome component homolog [Nasonia
vitripennis]
Length = 339
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 188/333 (56%), Positives = 215/333 (64%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIPEFK EDNP+ L+E
Sbjct: 15 VDNAWSLKIPEFKPEDNPNRLLEES----------------------------------- 39
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YL+ECWPLV+ AL H +KAELD+IEGSMTV +TR
Sbjct: 40 -------------SFATLFPKYREKYLRECWPLVQKALSEHHVKAELDLIEGSMTVKSTR 86
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL+SRSVP+EQAVRVLQDDI DIIKI + V+NK++FVKRRQRLI
Sbjct: 87 KTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQDDIGADIIKISSFVRNKEKFVKRRQRLI 146
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGCTLKSIELLTNCY+LVQGQTVAALGP+KG
Sbjct: 147 GPNGCTLKSIELLTNCYVLVQGQTVAALGPYKG--------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVRRI EDTMKNIHPIYNIKALMIKRELAKDPKLK+ENWERFLP F
Sbjct: 180 ------------LQQVRRIAEDTMKNIHPIYNIKALMIKRELAKDPKLKSENWERFLPKF 227
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
SK +SKRK PK +K K YTPFPPPQ ES+ +
Sbjct: 228 NSKNVSKRKQPKNKKEKKPYTPFPPPQQESKID 260
>gi|383847545|ref|XP_003699413.1| PREDICTED: KRR1 small subunit processome component homolog
[Megachile rotundata]
Length = 338
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/333 (56%), Positives = 215/333 (64%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP FK EDNP+ L+E
Sbjct: 16 VDNAWSLKIPAFKPEDNPNRLLEES----------------------------------- 40
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YLKE WPLV+ AL H +KAELD++EGSMTV TTR
Sbjct: 41 -------------SFATLFPKYREQYLKEHWPLVQKALAEHAVKAELDLVEGSMTVKTTR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL+SRSVP+EQAVRVLQDDI DIIKI + V+N+++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQDDIGSDIIKISSFVRNREKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGCTLKSIELLTNCY+LVQGQTVAALGP+KG
Sbjct: 148 GPNGCTLKSIELLTNCYVLVQGQTVAALGPYKG--------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP F
Sbjct: 181 ------------LQQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPRF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
SK +SKRK PKK+K K YTPFPPPQ ES+ +
Sbjct: 229 SSKNISKRKQPKKKKEKKPYTPFPPPQTESKID 261
>gi|321477353|gb|EFX88312.1| hypothetical protein DAPPUDRAFT_305506 [Daphnia pulex]
Length = 343
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 175/331 (52%), Positives = 208/331 (62%), Gaps = 87/331 (26%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
NAW MK+PEFK+E NPH L+E + F T +
Sbjct: 18 NAWKMKLPEFKQEHNPHGLLEE-------------------------SSFAT-------L 45
Query: 63 IIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKT 122
K R++ YL+ECWPLVK AL + IKAELDVIEGSMTV T+RKT
Sbjct: 46 FPKYREI----------------YLRECWPLVKKALGEYNIKAELDVIEGSMTVKTSRKT 89
Query: 123 WDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
WDPYII+KARDM+KLL+RSVPYEQAV++L DD++CDIIKIG QNK RFVKRRQRLIGP
Sbjct: 90 WDPYIILKARDMVKLLARSVPYEQAVKILNDDVACDIIKIGTQTQNKDRFVKRRQRLIGP 149
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242
NG TLK++ELLTNCY+LVQG TV+A+GP++G
Sbjct: 150 NGSTLKALELLTNCYILVQGNTVSAVGPYRG----------------------------- 180
Query: 243 TVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKS 302
L QVRR+VEDTM+NIHPIY+IKALMIKRELA+D KLKNE+WERFLP
Sbjct: 181 ----------LQQVRRVVEDTMENIHPIYHIKALMIKRELARDEKLKNESWERFLPTIPH 230
Query: 303 KTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K SKRK P K++ K EYTPFPP PES+ +
Sbjct: 231 KNTSKRKQPAKKRAKKEYTPFPPAPPESKVD 261
>gi|195032987|ref|XP_001988598.1| GH10489 [Drosophila grimshawi]
gi|378548394|sp|B4JDU5.1|KRR1_DROGR RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193904598|gb|EDW03465.1| GH10489 [Drosophila grimshawi]
Length = 341
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 173/330 (52%), Positives = 203/330 (61%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP FK EDNPH
Sbjct: 17 VDNAWSLKIPTFKAEDNPH----------------------------------------- 35
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
M++ S + + +E+YLKE WPLV+ + H ++AELD+IEGSM V TTR
Sbjct: 36 -------GMVEESSFATLFPKYREKYLKEVWPLVQQTVAEHHLRAELDLIEGSMVVKTTR 88
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIK+RDMIKL++RSVP+EQA RVLQD+ CDIIKIGNLV K++FVKRRQRLI
Sbjct: 89 KTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDETGCDIIKIGNLVHKKEKFVKRRQRLI 148
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TVAALGP+KG
Sbjct: 149 GPNGATLKSIELLTDCYVLVQGNTVAALGPYKG--------------------------- 181
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 182 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPQLANEDWSRFLPKF 229
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
K+K +SKRK PK RK K EYTPFPP QPES
Sbjct: 230 KNKNISKRKQPKSRKPKGEYTPFPPAQPES 259
>gi|241111418|ref|XP_002399277.1| rRNA processing protein, putative [Ixodes scapularis]
gi|215492943|gb|EEC02584.1| rRNA processing protein, putative [Ixodes scapularis]
Length = 352
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 183/329 (55%), Positives = 211/329 (64%), Gaps = 87/329 (26%)
Query: 5 WSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIII 64
WSMK+P F K+DNPH L E + F T
Sbjct: 24 WSMKLPAFTKDDNPHGVLCE-------------------------SAFATL--------- 49
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWD 124
+ +E+YL+ECWPLVK L H + ELDVIEGSMTV TT+K WD
Sbjct: 50 --------------FPKYREKYLRECWPLVKKTLSEHGVNGELDVIEGSMTVSTTKKMWD 95
Query: 125 PYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNG 184
PYII+KARDMIKLLSRSVPYEQA+RVL+DD+ CDIIKIG++V+N++RFVKRRQRL+GPNG
Sbjct: 96 PYIILKARDMIKLLSRSVPYEQAIRVLEDDVGCDIIKIGSMVRNRERFVKRRQRLVGPNG 155
Query: 185 CTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTV 244
TLK+IELLTNCY+LVQG TVAALGP+K
Sbjct: 156 TTLKAIELLTNCYVLVQGNTVAALGPYK-------------------------------- 183
Query: 245 AALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKT 304
GL VR+I E+TMKNIHPIYNIKALMIKRELAKDPKLK+ENWERFLP FKSKT
Sbjct: 184 -------GLQHVRKIAEETMKNIHPIYNIKALMIKRELAKDPKLKDENWERFLPKFKSKT 236
Query: 305 LSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
LSKRK PKKR+TK EYTPFPP QPES+ +
Sbjct: 237 LSKRKKPKKRRTKGEYTPFPPEQPESKMD 265
>gi|91081317|ref|XP_969842.1| PREDICTED: similar to dribble CG4258-PA [Tribolium castaneum]
Length = 350
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 184/335 (54%), Positives = 214/335 (63%), Gaps = 91/335 (27%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW+MKIPEFK EDNPH L+E + F T
Sbjct: 16 VENAWAMKIPEFKPEDNPHGLLEE-------------------------SSFATL----- 45
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMT----V 116
+ +E+YL++ WPLV+ L+ H I AELDV+EGSMT V
Sbjct: 46 ------------------FPQYREQYLRQVWPLVQKTLKEHHINAELDVVEGSMTGCMTV 87
Query: 117 FTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRR 176
TTRKTWDPYIIIKARDMIKL+SRSVP+EQA RVL DD+ CDIIKIG + +NK++FVKRR
Sbjct: 88 RTTRKTWDPYIIIKARDMIKLMSRSVPFEQAKRVLNDDVGCDIIKIGKITRNKEKFVKRR 147
Query: 177 QRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCY 236
QRLIGPNGCTLKSIELLTNCY+LVQGQTV+ALGP+K
Sbjct: 148 QRLIGPNGCTLKSIELLTNCYVLVQGQTVSALGPYK------------------------ 183
Query: 237 MLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERF 296
GL QVR+IVEDTMKN+HPIYNIKALMIK+ELAKDPKLKNENW+RF
Sbjct: 184 ---------------GLQQVRKIVEDTMKNMHPIYNIKALMIKKELAKDPKLKNENWDRF 228
Query: 297 LPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESE 331
LP F +K +SKRK PKK+K K YTPFPPPQ ES+
Sbjct: 229 LPRFVNKNISKRKQPKKKKEKKPYTPFPPPQTESK 263
>gi|307183875|gb|EFN70489.1| KRR1 small subunit processome component-like protein [Camponotus
floridanus]
Length = 305
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/330 (53%), Positives = 215/330 (65%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIPEFK++DNPH L+E + F T
Sbjct: 8 IDNAWSLKIPEFKEKDNPHRLLEE-------------------------SSFATM----- 37
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+ +E+YLKE W LV+ AL H +KAELD++EGSMTV TTR
Sbjct: 38 ------------------FPKYREQYLKEHWALVQKALAEHHVKAELDLVEGSMTVKTTR 79
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYII+KARDMIKL++RSVP+EQAVRVLQDDI+ D+IKI +LV+NK +FVKRRQRLI
Sbjct: 80 KTWDPYIIVKARDMIKLMARSVPFEQAVRVLQDDIAADVIKISSLVRNKAKFVKRRQRLI 139
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGC LKSIELLTNCY++VQGQTV+ALGP+KG
Sbjct: 140 GPNGCNLKSIELLTNCYVVVQGQTVSALGPYKG--------------------------- 172
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR++VEDTM+NIHP+Y++KALM+KRELAK+PKLKNENWE++LP +
Sbjct: 173 ------------LQQVRKVVEDTMRNIHPVYSLKALMLKRELAKNPKLKNENWEQYLPKY 220
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
SK +SKRK PKK+K K YTPFPPPQ ES
Sbjct: 221 NSKNISKRKEPKKKKVKKPYTPFPPPQQES 250
>gi|260786115|ref|XP_002588104.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
gi|229273262|gb|EEN44115.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
Length = 370
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 191/265 (72%), Gaps = 39/265 (14%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M++ S + + +E+YL+ECWPLVK L ++A LDVIEGSMTV TTRKTWDP+I+
Sbjct: 41 MLEESSFATLFPKYREQYLRECWPLVKKKLAEFGVRAVLDVIEGSMTVATTRKTWDPFIV 100
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
I+ARD+IKLL+RSVPYEQAVR+L DD+ CDIIKIG +V+NK+RFVKRRQRLIGPNG TLK
Sbjct: 101 IRARDLIKLLARSVPYEQAVRILDDDVFCDIIKIGGMVRNKERFVKRRQRLIGPNGQTLK 160
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++ELLT CY+LVQG TVAA+G HK
Sbjct: 161 AVELLTQCYVLVQGNTVAAIGTHK------------------------------------ 184
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
GL VR+IV DTMKNIHP+YNIKA+MIKRELAKDP LKNE+W+RFLP F+ K LSKR
Sbjct: 185 ---GLRDVRKIVVDTMKNIHPVYNIKAMMIKRELAKDPVLKNESWDRFLPKFQHKQLSKR 241
Query: 309 KMPKKRKTKSEYTPFPPPQPESEAN 333
K P K++ K EYTPFPPPQP+S+ +
Sbjct: 242 KQPFKKREKKEYTPFPPPQPQSKVD 266
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 62/90 (68%), Gaps = 17/90 (18%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K P F KEDNPH +YL+ECWPLVK L ++A LDVIEGSMT
Sbjct: 28 KEPGFSKEDNPHGMLEESSFATLFPKYREQYLRECWPLVKKKLAEFGVRAVLDVIEGSMT 87
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TTRKTWDP+I+I+ARD+IKLL+RSVPYE
Sbjct: 88 VATTRKTWDPFIVIRARDLIKLLARSVPYE 117
>gi|270005203|gb|EFA01651.1| hypothetical protein TcasGA2_TC007222 [Tribolium castaneum]
Length = 537
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/352 (51%), Positives = 214/352 (60%), Gaps = 106/352 (30%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW+MKIPEFK EDNPH L+E
Sbjct: 16 VENAWAMKIPEFKPEDNPHGLLEES----------------------------------- 40
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMT----- 115
S + + +E+YL++ WPLV+ L+ H I AELDV+EGSMT
Sbjct: 41 -------------SFATLFPQYREQYLRQVWPLVQKTLKEHHINAELDVVEGSMTTLKEH 87
Query: 116 --------------VFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIK 161
V TTRKTWDPYIIIKARDMIKL+SRSVP+EQA RVL DD+ CDIIK
Sbjct: 88 HINAELDVVEGCMTVRTTRKTWDPYIIIKARDMIKLMSRSVPFEQAKRVLNDDVGCDIIK 147
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGP 221
IG + +NK++FVKRRQRLIGPNGCTLKSIELLTNCY+LVQGQTV+ALGP+K
Sbjct: 148 IGKITRNKEKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVSALGPYK--------- 198
Query: 222 NGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRE 281
GL QVR+IVEDTMKN+HPIYNIKALMIK+E
Sbjct: 199 ------------------------------GLQQVRKIVEDTMKNMHPIYNIKALMIKKE 228
Query: 282 LAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
LAKDPKLKNENW+RFLP F +K +SKRK PKK+K K YTPFPPPQ ES+ +
Sbjct: 229 LAKDPKLKNENWDRFLPRFVNKNISKRKQPKKKKEKKPYTPFPPPQTESKID 280
>gi|194758793|ref|XP_001961643.1| GF14827 [Drosophila ananassae]
gi|378548392|sp|B3MM49.1|KRR1_DROAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190615340|gb|EDV30864.1| GF14827 [Drosophila ananassae]
Length = 343
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/330 (53%), Positives = 203/330 (61%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW+MKIP FK EDNPH
Sbjct: 16 VENAWAMKIPSFKPEDNPH----------------------------------------- 34
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
M++ S + + +E YLKE WPLV+ + H +KAELD++EGSM V T+R
Sbjct: 35 -------GMVEESSFATLFPKYRERYLKEVWPLVEQCVAEHHLKAELDLVEGSMVVKTSR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TVAALGP+K
Sbjct: 148 GPNGATLKSIELLTDCYVLVQGNTVAALGPYK---------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
GL QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 180 -----------GLQQVRDIVVETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
K+K +SKRK PK +K K EYTPFPP QPES
Sbjct: 229 KNKNISKRKQPKVKKAKKEYTPFPPAQPES 258
>gi|307214181|gb|EFN89298.1| KRR1 small subunit processome component-like protein [Harpegnathos
saltator]
Length = 342
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/330 (54%), Positives = 210/330 (63%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP+FKKEDNPH L+E
Sbjct: 15 VDNAWSLKIPQFKKEDNPHRLLEES----------------------------------- 39
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YLKE W L++ ALE H I AELD++EGSMTV TTR
Sbjct: 40 -------------SFATLFPKYREQYLKEHWSLIQKALEEHAITAELDLVEGSMTVKTTR 86
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKLLSRSVPYEQA++VLQD+IS DIIKI +L+++K++FVKRRQRLI
Sbjct: 87 KTWDPYIIIKARDMIKLLSRSVPYEQAMKVLQDEISADIIKISSLIRDKEKFVKRRQRLI 146
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLK+IELLTNCY+LVQGQTVAALGP+KG
Sbjct: 147 GPNGSTLKAIELLTNCYVLVQGQTVAALGPYKG--------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVRRI EDTMKNIHPIYNIKALMIKRELAKDPKL NENW+RFLP F
Sbjct: 180 ------------LQQVRRIAEDTMKNIHPIYNIKALMIKRELAKDPKLTNENWDRFLPKF 227
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
+K ++KRK P+K+K K YT FPP ES
Sbjct: 228 NNKNINKRKQPRKKKEKKPYTTFPPLPQES 257
>gi|332020472|gb|EGI60887.1| KRR1 small subunit processome component-like protein [Acromyrmex
echinatior]
Length = 336
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 172/333 (51%), Positives = 216/333 (64%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIPEFK+EDNPH L +E S
Sbjct: 13 IDNAWSLKIPEFKEEDNPHRLL----------------------VESSFATM-------- 42
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+ +E+YLKE WPL++ AL+ + IKAELD+IEGSMTV TTR
Sbjct: 43 ------------------FPKYREQYLKEHWPLIQKALDEYHIKAELDLIEGSMTVKTTR 84
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARD+IKL++RSVP+EQAV+VLQDDI+ DIIKI + V+NK++FVKRRQRLI
Sbjct: 85 KTWDPYIIIKARDVIKLMARSVPFEQAVKVLQDDITADIIKISSFVRNKEKFVKRRQRLI 144
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGC LKSIELLTNCY++VQGQTV+ALGP+K
Sbjct: 145 GPNGCNLKSIELLTNCYVVVQGQTVSALGPYK---------------------------- 176
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
G+ QVR+IV+DTMKN+HP+Y++K LM+KREL+K+PKLK+ENWER+LP +
Sbjct: 177 -----------GVQQVRKIVQDTMKNVHPVYSLKTLMLKRELSKNPKLKDENWERYLPKY 225
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
SK +SKRK PKK+K K YTPFPPPQ ES+ +
Sbjct: 226 TSKNISKRKEPKKKKEKKPYTPFPPPQQESKID 258
>gi|322785487|gb|EFZ12156.1| hypothetical protein SINV_05919 [Solenopsis invicta]
Length = 339
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 171/330 (51%), Positives = 210/330 (63%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIPEFK+ DNPH L+E
Sbjct: 16 IDNAWSLKIPEFKETDNPHRLLEES----------------------------------- 40
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E YLKE WPL++ AL H IK E+D+IEGSMTV TTR
Sbjct: 41 -------------SFATMFPKYREHYLKEHWPLIQKALAEHHIKVEMDLIEGSMTVKTTR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYI+IKARDMIKL++RSVP+EQAV+VLQDDI+ D+IKI + V+NK++FVKRRQRLI
Sbjct: 88 KTWDPYIVIKARDMIKLMARSVPFEQAVKVLQDDIAADVIKISSFVRNKEKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGC LKSIELLTNCY++VQGQTV+ALGP+K
Sbjct: 148 GPNGCNLKSIELLTNCYVVVQGQTVSALGPYK---------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
G+ QVR++V+DTMKNIHP+Y++K LM+KRELAK+P LKNENWERFLP +
Sbjct: 180 -----------GVQQVRKLVQDTMKNIHPVYSLKTLMLKRELAKNPTLKNENWERFLPKY 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
SK +SKRK PKK+K K YTPFPPPQ ES
Sbjct: 229 NSKNISKRKEPKKKKEKKPYTPFPPPQQES 258
>gi|195437492|ref|XP_002066674.1| GK24616 [Drosophila willistoni]
gi|378548398|sp|B4N0P7.1|KRR1_DROWI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194162759|gb|EDW77660.1| GK24616 [Drosophila willistoni]
Length = 347
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/330 (53%), Positives = 206/330 (62%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP FK+ DNPH
Sbjct: 17 VDNAWSLKIPAFKETDNPH----------------------------------------- 35
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
MI+ S + + +E+YLKE WPLV+ A+ H +KAELD++EGSM V TTR
Sbjct: 36 -------GMIEESSFATLFPKYREKYLKEVWPLVEQAVGEHHLKAELDLVEGSMVVKTTR 88
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+EQA RVLQD+I CDIIKIGNLVQ K++FVKRRQRLI
Sbjct: 89 KTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDEIGCDIIKIGNLVQKKEKFVKRRQRLI 148
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+KG
Sbjct: 149 GPNGATLKSIELLTDCYVLVQGNTVSALGPYKG--------------------------- 181
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDPKL NE+W RFLP F
Sbjct: 182 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKF 229
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
K+K LSKRK PK +K K EYTPFPP QPES
Sbjct: 230 KNKNLSKRKQPKVKKPKKEYTPFPPAQPES 259
>gi|17137346|ref|NP_477240.1| dribble [Drosophila melanogaster]
gi|74870304|sp|Q9VPU8.1|KRR1_DROME RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|7296147|gb|AAF51440.1| dribble [Drosophila melanogaster]
gi|17862394|gb|AAL39674.1| LD24634p [Drosophila melanogaster]
gi|220944572|gb|ACL84829.1| dbe-PA [synthetic construct]
gi|220954446|gb|ACL89766.1| dbe-PA [synthetic construct]
Length = 345
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/333 (52%), Positives = 206/333 (61%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWSMKIP F++EDNPH
Sbjct: 16 VDNAWSMKIPAFRQEDNPH----------------------------------------- 34
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
M++ S + + +E YLKE WPLV+ L H +KAELD++EGSM V T+R
Sbjct: 35 -------GMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+KG
Sbjct: 148 GPNGATLKSIELLTDCYVLVQGNTVSALGPYKG--------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 181 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K+K +SKRK PK +K K EYTPFPP QPES+ +
Sbjct: 229 KNKNISKRKQPKVKKQKKEYTPFPPSQPESKVD 261
>gi|312375637|gb|EFR22967.1| hypothetical protein AND_13898 [Anopheles darlingi]
Length = 352
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 174/333 (52%), Positives = 208/333 (62%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW +KIPEF+ DNP+ L+E
Sbjct: 22 VENAWLLKIPEFQPSDNPNGLLEES----------------------------------- 46
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S S + +E+Y+KECW LV+ AL HFIKAELD+I+G+MTV TTR
Sbjct: 47 -------------SFSCLFPKYREKYVKECWSLVEKALSSHFIKAELDLIQGNMTVKTTR 93
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDP+II+KARD+IKLLSRSVPYEQAV+VL+D+ISCDIIKI NLV+NK +FVKRR RLI
Sbjct: 94 KTWDPFIILKARDLIKLLSRSVPYEQAVKVLEDEISCDIIKIKNLVRNKDKFVKRRSRLI 153
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGCTLKS+ELLTNCY+LVQG TV+A+GP+KGL C
Sbjct: 154 GPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGL-------------------QC----- 189
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
VR++VE+TMKNIHPIYNIKALMIKREL KD L+ ENWERFLP F
Sbjct: 190 ---------------VRKVVEETMKNIHPIYNIKALMIKRELMKDENLREENWERFLPRF 234
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
+SK SKR PK K K +YTPFPPP ES+ +
Sbjct: 235 QSKNTSKRAKPKVVKKKKDYTPFPPPLLESKVD 267
>gi|194853811|ref|XP_001968227.1| GG24622 [Drosophila erecta]
gi|378548393|sp|B3N899.1|KRR1_DROER RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190660094|gb|EDV57286.1| GG24622 [Drosophila erecta]
Length = 345
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 173/333 (51%), Positives = 206/333 (61%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAW+MKIP F++EDNPH
Sbjct: 16 VDNAWAMKIPTFREEDNPH----------------------------------------- 34
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
M++ S + + +E YLKE WPLV+ L H +KAELD++EGSM V T+R
Sbjct: 35 -------GMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVRTSR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+KG
Sbjct: 148 GPNGATLKSIELLTDCYVLVQGNTVSALGPYKG--------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 181 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K+K +SKRK PK +K K EYTPFPP QPES+ +
Sbjct: 229 KNKNISKRKQPKVKKQKKEYTPFPPSQPESKVD 261
>gi|410918454|ref|XP_003972700.1| PREDICTED: KRR1 small subunit processome component homolog
[Takifugu rubripes]
Length = 380
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/251 (60%), Positives = 183/251 (72%), Gaps = 39/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV+ AL IKA +D+IEGSMTV TTRKT+DPY II+ARD+IKLL+RSV
Sbjct: 66 REAYLKECWPLVEKALADVHIKATMDLIEGSMTVHTTRKTFDPYAIIRARDLIKLLARSV 125
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQAVR+LQDDI+CDIIKIG LV+NK+RFVKRRQRLIGP G TLK++ELLTNCY++VQG
Sbjct: 126 PFEQAVRILQDDIACDIIKIGTLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQG 185
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ALG GL +VR++V D
Sbjct: 186 NTVSALG---------------------------------------SFSGLKEVRKVVMD 206
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TMKNIHPIYNIK LMIKRELAKDP+L+ +NWERFLP F+ K L+KR+ PKK+ K EYTP
Sbjct: 207 TMKNIHPIYNIKTLMIKRELAKDPELRAQNWERFLPKFRRKNLAKRREPKKKAVKKEYTP 266
Query: 323 FPPPQPESEAN 333
FPP QPES+ +
Sbjct: 267 FPPSQPESKVD 277
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDN H YLKECWPLV+ AL IKA +D+I
Sbjct: 36 DGW--KEPSFTREDNLHGLLEESSFATLFPKYREAYLKECWPLVEKALADVHIKATMDLI 93
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TTRKT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 94 EGSMTVHTTRKTFDPYAIIRARDLIKLLARSVPFE 128
>gi|195388432|ref|XP_002052884.1| GJ19628 [Drosophila virilis]
gi|378548397|sp|B4LTY6.1|KRR1_DROVI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194149341|gb|EDW65039.1| GJ19628 [Drosophila virilis]
Length = 343
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/331 (52%), Positives = 205/331 (61%), Gaps = 87/331 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP FK EDNPH ++E
Sbjct: 17 VDNAWSLKIPTFKAEDNPHGLVEES----------------------------------- 41
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YLKE WPLV+ + H +KAELD++EGSM V TTR
Sbjct: 42 -------------SFATLFPKYREKYLKEVWPLVQQCVAEHHLKAELDLVEGSMVVKTTR 88
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIK+RDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 89 KTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 148
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+K
Sbjct: 149 GPNGATLKSIELLTDCYVLVQGNTVSALGPYK---------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
GL QVR IV +TM N+HPIYNIKALMIKREL KDPKL NE+W RFLP F
Sbjct: 181 -----------GLQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKF 229
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESE 331
K+K +SKRK PK +K K EYTPFPP QPES+
Sbjct: 230 KNKNISKRKQPKNKKPKKEYTPFPPAQPESK 260
>gi|2208950|emb|CAB09659.1| dribble [Drosophila melanogaster]
Length = 327
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/333 (52%), Positives = 206/333 (61%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWSMKIP F++EDNPH ++E
Sbjct: 16 VDNAWSMKIPAFRQEDNPHGMVEES----------------------------------- 40
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E YLKE WPLV+ L H +KAELD++EGSM V T+R
Sbjct: 41 -------------SFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+K
Sbjct: 148 GPNGATLKSIELLTDCYVLVQGNTVSALGPYK---------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
GL QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 180 -----------GLQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K+K +SKRK PK +K K EYTPFPP QPES+ +
Sbjct: 229 KNKNISKRKQPKVKKQKKEYTPFPPSQPESKVD 261
>gi|125985977|ref|XP_001356752.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
gi|54645077|gb|EAL33817.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/330 (52%), Positives = 205/330 (62%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP F++EDNPH ++E
Sbjct: 15 VDNAWSLKIPAFRQEDNPHGMVEES----------------------------------- 39
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YL+E WPLV+ + H +KAELD++EGSM V TTR
Sbjct: 40 -------------SFATLFPKYREKYLREVWPLVEQCVAEHQLKAELDLVEGSMVVKTTR 86
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIK+RDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 87 KTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 146
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+KG
Sbjct: 147 GPNGATLKSIELLTDCYVLVQGNTVSALGPYKG--------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDPKL NE+W RFLP F
Sbjct: 180 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKF 227
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
K+K +SKRK PK +K K EYTPFPP QPES
Sbjct: 228 KNKNISKRKQPKAKKPKKEYTPFPPAQPES 257
>gi|118789667|ref|XP_317574.3| AGAP007912-PA [Anopheles gambiae str. PEST]
gi|116123327|gb|EAA12217.4| AGAP007912-PA [Anopheles gambiae str. PEST]
Length = 348
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 172/330 (52%), Positives = 204/330 (61%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW +KIPEFK EDNP+ L+E
Sbjct: 22 VENAWLLKIPEFKPEDNPNGLLEES----------------------------------- 46
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S S + +E+Y+KECWPLV AL H IKA+LD+I G+MTV TTR
Sbjct: 47 -------------SFSCLFPKYREKYIKECWPLVVKALSTHHIKADLDLILGNMTVRTTR 93
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYII+KARD+IKLLSRSVP+EQAV+VL+D+I CDIIK+ NLV NK++FVKRR RLI
Sbjct: 94 KTWDPYIILKARDLIKLLSRSVPFEQAVKVLEDEIGCDIIKVKNLVANKEKFVKRRSRLI 153
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGCTLKS+ELLTNCY+LVQG TV+A+GP+KGL C
Sbjct: 154 GPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGL-------------------QC----- 189
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
VR++VE+TMKNIHPIYNIKALMIKREL KD L+ ENWERFLP F
Sbjct: 190 ---------------VRKVVEETMKNIHPIYNIKALMIKRELMKDENLREENWERFLPRF 234
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
+SK +KR PK K K EYTPFPPP +S
Sbjct: 235 QSKNTTKRNKPKVVKKKKEYTPFPPPLQDS 264
>gi|157108481|ref|XP_001650245.1| hiv-1 rev binding protein [Aedes aegypti]
gi|108884005|gb|EAT48230.1| AAEL000708-PA [Aedes aegypti]
Length = 349
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/333 (52%), Positives = 211/333 (63%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW +KIPEFKKEDNP +E
Sbjct: 22 VENAWLLKIPEFKKEDNPQGLAEES----------------------------------- 46
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S S + +E+Y+KECWPLV+ AL+ H +KAELD+I+G+MTV TTR
Sbjct: 47 -------------SFSCLFPKYREKYIKECWPLVEKALDGHHLKAELDLIQGNMTVKTTR 93
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
TWDP+II+KARD+IKLLSRSVP+EQAV+VL D+ISCDIIKI NLV+NK +FVKRR RLI
Sbjct: 94 NTWDPFIILKARDLIKLLSRSVPFEQAVKVLDDEISCDIIKIKNLVRNKAKFVKRRNRLI 153
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGCTLKS+ELLTNCY+LVQG TV+A+GP+KGL C
Sbjct: 154 GPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGL-------------------QC----- 189
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
VR++VE+TMKNIHPIYNIKALMIKREL KD KLK ENWERFLP F
Sbjct: 190 ---------------VRKVVEETMKNIHPIYNIKALMIKRELMKDDKLKEENWERFLPKF 234
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
+SK +KRK PK++K K EYTPFPPP ES+ +
Sbjct: 235 QSKNTTKRKKPKEQKKKKEYTPFPPPLLESKVD 267
>gi|195118158|ref|XP_002003607.1| GI18007 [Drosophila mojavensis]
gi|378548395|sp|B4KF66.1|KRR1_DROMO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193914182|gb|EDW13049.1| GI18007 [Drosophila mojavensis]
Length = 344
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 175/330 (53%), Positives = 202/330 (61%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP FK EDNPH ++E
Sbjct: 17 VDNAWSLKIPAFKPEDNPHGLVEES----------------------------------- 41
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YLKE WPLV+ L H +KAELD+IEGSM V TTR
Sbjct: 42 -------------SFATLFPKYREKYLKEVWPLVEQCLAEHHLKAELDLIEGSMVVKTTR 88
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIK+RDMIKL++RSVP+EQA RVLQDD CDIIKIGNLV K++FVKRRQRLI
Sbjct: 89 KTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDTGCDIIKIGNLVHKKEKFVKRRQRLI 148
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+K
Sbjct: 149 GPNGATLKSIELLTDCYVLVQGNTVSALGPYK---------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
GL QVR IV DTM N+HPIYNIKALMIKREL KDPKL E+W RFLP F
Sbjct: 181 -----------GLQQVRDIVLDTMNNVHPIYNIKALMIKRELMKDPKLAGEDWSRFLPKF 229
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
K+K +SKRK PK +K K EYTPFPP QPES
Sbjct: 230 KNKNISKRKQPKNKKPKKEYTPFPPQQPES 259
>gi|148223443|ref|NP_001084288.1| KRR1, small subunit (SSU) processome component, homolog [Xenopus
laevis]
gi|47937628|gb|AAH72210.1| HRB2 protein [Xenopus laevis]
Length = 372
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 197/267 (73%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY
Sbjct: 47 RGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEGSMTVTTTKKTFDPY 106
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
+I++ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++RF+KRRQRL+GP G T
Sbjct: 107 VIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGST 166
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 167 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 190
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIKALMIKRELAKDP+L++++WERFLP FK K +S
Sbjct: 191 ---FGGLKEVRKVVSDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVS 247
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K YTPFPPPQPES+ +
Sbjct: 248 KRKEPKKKNVKKAYTPFPPPQPESQID 274
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 17/86 (19%)
Query: 12 FKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 54
F KEDNP YLKECWPLV+ AL F+KAELD+IEGSMTV TT
Sbjct: 40 FSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEGSMTVTTT 99
Query: 55 RKTWDPYIIIKARDMIKLLSRSVPYE 80
+KT+DPY+I++ARD+IKLL+RSVP+E
Sbjct: 100 KKTFDPYVIVRARDLIKLLARSVPFE 125
>gi|195148176|ref|XP_002015050.1| GL18627 [Drosophila persimilis]
gi|378548396|sp|B4G9L6.1|KRR1_DROPE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194107003|gb|EDW29046.1| GL18627 [Drosophila persimilis]
Length = 340
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 172/330 (52%), Positives = 205/330 (62%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS+KIP F++EDNPH ++E
Sbjct: 15 VDNAWSLKIPAFRQEDNPHGMVEES----------------------------------- 39
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YL+E WPLV+ + H +KAELD++EGSM V TTR
Sbjct: 40 -------------SFATLFPKYREKYLREVWPLVEQCVAEHQLKAELDLVEGSMVVKTTR 86
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIK+RDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 87 KTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 146
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+KG
Sbjct: 147 GPNGATLKSIELLTDCYVLVQGNTVSALGPYKG--------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDPKL NE+W RFLP F
Sbjct: 180 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKF 227
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
K+K +SKRK PK +K K EYTPFPP QPES
Sbjct: 228 KNKNISKRKQPKSKKPKKEYTPFPPAQPES 257
>gi|195470375|ref|XP_002087483.1| GE15854 [Drosophila yakuba]
gi|378548399|sp|B4P2Y8.1|KRR1_DROYA RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194173584|gb|EDW87195.1| GE15854 [Drosophila yakuba]
Length = 344
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/333 (51%), Positives = 205/333 (61%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAW+MKIP F++EDN P
Sbjct: 16 VDNAWAMKIPTFRQEDN------------------------------------------P 33
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+ +++ L + +E YLKE WPLV+ L H +KAELD++EGSM V T+R
Sbjct: 34 HGVVEESSFATLFPK------YRERYLKEVWPLVEQCLSEHHLKAELDLMEGSMVVKTSR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV K++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT+CY+LVQG TV+ALGP+KG
Sbjct: 148 GPNGATLKSIELLTDCYVLVQGNTVSALGPYKG--------------------------- 180
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 181 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K+K +SKRK PK +K K EYTPFPP QPES+ +
Sbjct: 229 KNKNISKRKQPKVKKQKKEYTPFPPSQPESKVD 261
>gi|187469407|gb|AAI67117.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 353
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 198/267 (74%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY
Sbjct: 48 RGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPY 107
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
+I++ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++RF+KRRQRL+GP G T
Sbjct: 108 VIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGST 167
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 168 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 191
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIKALMIKRELAKDP+L++++WERFLP FK K +S
Sbjct: 192 ---FSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVS 248
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K +YTPFPPPQPES+ +
Sbjct: 249 KRKEPKKKSVKKDYTPFPPPQPESQID 275
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 17/86 (19%)
Query: 12 FKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 54
F KEDNP YLKECWPLV+ AL F+KAELD+IEGSMTV TT
Sbjct: 41 FTKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTT 100
Query: 55 RKTWDPYIIIKARDMIKLLSRSVPYE 80
+KT+DPY+I++ARD+IKLL+RSVP+E
Sbjct: 101 KKTFDPYVIVRARDLIKLLARSVPFE 126
>gi|301621305|ref|XP_002939993.1| PREDICTED: KRR1 small subunit processome component homolog [Xenopus
(Silurana) tropicalis]
gi|159155304|gb|AAI54861.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 373
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 198/267 (74%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY
Sbjct: 48 RGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPY 107
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
+I++ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++RF+KRRQRL+GP G T
Sbjct: 108 VIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGST 167
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 168 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 191
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIKALMIKRELAKDP+L++++WERFLP FK K +S
Sbjct: 192 ---FSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVS 248
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K +YTPFPPPQPES+ +
Sbjct: 249 KRKEPKKKSVKKDYTPFPPPQPESQID 275
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 17/86 (19%)
Query: 12 FKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 54
F KEDNP YLKECWPLV+ AL F+KAELD+IEGSMTV TT
Sbjct: 41 FTKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTT 100
Query: 55 RKTWDPYIIIKARDMIKLLSRSVPYE 80
+KT+DPY+I++ARD+IKLL+RSVP+E
Sbjct: 101 KKTFDPYVIVRARDLIKLLARSVPFE 126
>gi|327272856|ref|XP_003221200.1| PREDICTED: KRR1 small subunit processome component homolog [Anolis
carolinensis]
Length = 385
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/251 (61%), Positives = 187/251 (74%), Gaps = 39/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPYIII+ARD+IKLL+RSV
Sbjct: 62 REAYLKECWPLVQKALNEHHINAALDLIEGSMTVSTTKKTFDPYIIIRARDLIKLLARSV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQAVR+L+DD++CDIIKIG LV+N++RF+KRRQRLIGPNG TLK++ELLT+CY+LVQG
Sbjct: 122 PFEQAVRILEDDVACDIIKIGTLVRNRERFIKRRQRLIGPNGSTLKALELLTSCYILVQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ALGP GL +VR++V D
Sbjct: 182 NTVSALGP---------------------------------------FNGLKEVRKVVLD 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TMKNIHPIYNIK LMIKREL+KDP+L+ +NWERFLP FK K L+KRK PKK+ K EYTP
Sbjct: 203 TMKNIHPIYNIKTLMIKRELSKDPELRAQNWERFLPKFKHKNLNKRKEPKKKNVKKEYTP 262
Query: 323 FPPPQPESEAN 333
FPPPQPES+ +
Sbjct: 263 FPPPQPESQVD 273
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 64/95 (67%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P FK+EDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 32 DGW--KEPAFKREDNPKGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINAALDLI 89
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSVP+E
Sbjct: 90 EGSMTVSTTKKTFDPYIIIRARDLIKLLARSVPFE 124
>gi|240849184|ref|NP_001155707.1| KRR1 small subunit processome component homolog [Acyrthosiphon
pisum]
gi|239788163|dbj|BAH70773.1| ACYPI007346 [Acyrthosiphon pisum]
Length = 291
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 173/333 (51%), Positives = 206/333 (61%), Gaps = 89/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
MENAW +IPEF+ EDNPH L+E + F T
Sbjct: 1 MENAWKTEIPEFRPEDNPHGLLEE-------------------------SAFATL----- 30
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+ +E YLKECWPLV+N+L + IKA+LD++EGSM+V TTR
Sbjct: 31 ------------------FPKYRETYLKECWPLVQNSLSKYHIKADLDLLEGSMSVRTTR 72
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDP I+KARD+IKLLSRSVPYE AVRV++DD++ DIIKIG++V+N+ +FVKRRQRLI
Sbjct: 73 KTWDPASILKARDLIKLLSRSVPYEHAVRVMEDDMAADIIKIGSMVRNRDKFVKRRQRLI 132
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GP GCTLKSIELLTNCYMLVQGQTVAALGP K
Sbjct: 133 GPGGCTLKSIELLTNCYMLVQGQTVAALGPFK---------------------------- 164
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
GL QVRRIV DTMKN+HPIYNIKALMIKREL ++PKLKNENW+RFLPNF
Sbjct: 165 -----------GLQQVRRIVTDTMKNVHPIYNIKALMIKRELERNPKLKNENWDRFLPNF 213
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K K + K+K +K K YTPFPP ES+ +
Sbjct: 214 KPKNVPKKKS--TKKPKKPYTPFPPAPAESKID 244
>gi|113197682|gb|AAI21623.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 371
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 198/267 (74%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY
Sbjct: 46 RGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPY 105
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
+I++ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++RF+KRRQRL+GP G T
Sbjct: 106 VIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGST 165
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 166 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 189
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIKALMIKRELAKDP+L++++WERFLP FK K +S
Sbjct: 190 ---FSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVS 246
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K +YTPFPPPQPES+ +
Sbjct: 247 KRKEPKKKSVKKDYTPFPPPQPESQID 273
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 17/86 (19%)
Query: 12 FKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 54
F KEDNP YLKECWPLV+ AL F+KAELD+IEGSMTV TT
Sbjct: 39 FTKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTT 98
Query: 55 RKTWDPYIIIKARDMIKLLSRSVPYE 80
+KT+DPY+I++ARD+IKLL+RSVP+E
Sbjct: 99 KKTFDPYVIVRARDLIKLLARSVPFE 124
>gi|242024225|ref|XP_002432529.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
gi|212517981|gb|EEB19791.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
Length = 341
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/333 (53%), Positives = 208/333 (62%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAWS+K+PEFKKEDNPH L+E T+F
Sbjct: 15 VENAWSLKVPEFKKEDNPHRLLEES---------------------SFATLFPK------ 47
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+E YL++ WP ++ L + IK ELDVIEGSM V TTR
Sbjct: 48 ---------------------YREPYLRQYWPQIQKVLNEYGIKGELDVIEGSMKVKTTR 86
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKLLSRSVP+EQA+RVL+DDI CDIIKIG+LV+N+++F+KRRQR+I
Sbjct: 87 KTWDPYIIIKARDMIKLLSRSVPFEQAIRVLEDDIFCDIIKIGSLVRNREKFIKRRQRII 146
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GP GCTLKSIELLTNCY+LVQGQTVAALGP+KG
Sbjct: 147 GPGGCTLKSIELLTNCYVLVQGQTVAALGPYKG--------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L++VR IVE TM N+HPIY IK LMIKRELAKDP LKNENWERFLP F
Sbjct: 180 ------------LMEVRSIVEKTMFNMHPIYKIKELMIKRELAKDPILKNENWERFLPKF 227
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K+K L K+K PK +K K YTPFPPPQ ES+ +
Sbjct: 228 KNKHLPKKKKPKNKKEKKPYTPFPPPQTESKID 260
>gi|395541221|ref|XP_003772545.1| PREDICTED: KRR1 small subunit processome component homolog
[Sarcophilus harrisii]
Length = 381
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/267 (58%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 54 RGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLIEGSMTVSTTKKTFDPY 113
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSVP+EQA+R+LQDD +CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 114 IIIRARDLIKLLARSVPFEQAIRILQDDTACDIIKIGSLVRNKERFVKRRQRLIGPKGST 173
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 174 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 197
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKREL+KD +L+++NWERFLP FK K L+
Sbjct: 198 ---FNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELSKDSELRSQNWERFLPQFKHKNLN 254
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 255 KRKEPKKKTVKKEYTPFPPPQPESQID 281
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F K+DNP YLKECWPLV+ AL H I A LD+I
Sbjct: 40 DGW--KEPPFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLI 97
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSVP+E
Sbjct: 98 EGSMTVSTTKKTFDPYIIIRARDLIKLLARSVPFE 132
>gi|226442952|ref|NP_848725.2| KRR1 small subunit processome component homolog [Mus musculus]
gi|50400505|sp|Q8BGA5.1|KRR1_MOUSE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2 homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|26326557|dbj|BAC27022.1| unnamed protein product [Mus musculus]
gi|26334765|dbj|BAC31083.1| unnamed protein product [Mus musculus]
gi|59809046|gb|AAH89510.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Mus musculus]
gi|74219882|dbj|BAE40525.1| unnamed protein product [Mus musculus]
gi|148689796|gb|EDL21743.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_b [Mus musculus]
Length = 380
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 51 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 110
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 111 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 170
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 171 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 194
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 195 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 251
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 252 KRKEPKKKSVKKEYTPFPPPQPESQID 278
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 37 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 94
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 95 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 129
>gi|349806193|gb|AEQ18569.1| hypothetical protein [Hymenochirus curtipes]
Length = 271
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/246 (60%), Positives = 184/246 (74%), Gaps = 40/246 (16%)
Query: 88 KECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQA 147
KECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY II+ARD+IKLL+RSVP++QA
Sbjct: 1 KECWPLVQKALGESFVKAELDLIEGSMTVSTTKKTYDPYSIIRARDLIKLLARSVPFDQA 60
Query: 148 VRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAA 207
VR+LQDD++CDIIKIG+LV+N++RF+KRRQRL+GP G TLK++ELLTNCY++VQG TV+A
Sbjct: 61 VRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSA 120
Query: 208 LGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNI 267
LGP GL ++R++V +TMKNI
Sbjct: 121 LGP---------------------------------------FNGLKEIRKVVLETMKNI 141
Query: 268 HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQ 327
HPIYNIKALMIKRELAKDP+L+ ++WERFLP FK K +SKRK PKK K EYTPFPPPQ
Sbjct: 142 HPIYNIKALMIKRELAKDPELRTKSWERFLPTFKHKNISKRKEPKK-SVKREYTPFPPPQ 200
Query: 328 PESEAN 333
PES+ +
Sbjct: 201 PESQID 206
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 52/58 (89%)
Query: 23 KECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
KECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY II+ARD+IKLL+RSVP++
Sbjct: 1 KECWPLVQKALGESFVKAELDLIEGSMTVSTTKKTYDPYSIIRARDLIKLLARSVPFD 58
>gi|148689797|gb|EDL21744.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_c [Mus musculus]
Length = 380
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 51 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 110
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 111 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 170
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 171 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 194
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 195 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 251
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 252 KRKEPKKKSVKKEYTPFPPPQPESQ 276
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 37 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 94
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 95 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 129
>gi|62825895|gb|AAH94236.1| Krr1 protein [Mus musculus]
Length = 379
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 50 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 109
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 110 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 169
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 170 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 193
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 194 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 250
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 251 KRKEPKKKSVKKEYTPFPPPQPESQID 277
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 61/90 (67%), Gaps = 17/90 (18%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K P F KEDNP YLKECWPLV+ AL H +KA LD+IEGSMT
Sbjct: 39 KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMT 98
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 99 VCTTKKTFDPYIIIRARDLIKLLARSVSFE 128
>gi|354480544|ref|XP_003502466.1| PREDICTED: KRR1 small subunit processome component homolog
[Cricetulus griseus]
Length = 381
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKSIKKEYTPFPPPQPESQID 279
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|380015443|ref|XP_003691711.1| PREDICTED: KRR1 small subunit processome component homolog [Apis
florea]
Length = 340
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 183/333 (54%), Positives = 212/333 (63%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAWS++IP FK EDNP+ L+E T+F
Sbjct: 16 VDNAWSLEIPSFKPEDNPNRLLQES---------------------SFATLFPK------ 48
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+E+YLKE WPL++ AL+ + IKAELD IEGSMTV TTR
Sbjct: 49 ---------------------YREQYLKEHWPLIQKALDEYAIKAELDFIEGSMTVKTTR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL+SRSVP+EQA+RVLQDDIS DIIKI + V+N+++FVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMSRSVPFEQAIRVLQDDISSDIIKISSFVRNREKFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GP GCTLKSIELLTNCY+LVQGQTVAALGP
Sbjct: 148 GPKGCTLKSIELLTNCYVLVQGQTVAALGP------------------------------ 177
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
++ L VRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP F
Sbjct: 178 ---------YRSLPLVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPKF 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
SK ++KRK PK +K K YTPFPPPQ ES+ +
Sbjct: 229 NSKNINKRKQPKNKKEKKPYTPFPPPQQESKID 261
>gi|344240571|gb|EGV96674.1| KRR1 small subunit processome component-like [Cricetulus griseus]
Length = 711
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKSIKKEYTPFPPPQPESQID 279
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|157823697|ref|NP_001101564.1| KRR1 small subunit processome component homolog [Rattus norvegicus]
gi|118763785|gb|AAI28769.1| Hrb2 protein [Rattus norvegicus]
gi|149066984|gb|EDM16717.1| rCG48818, isoform CRA_a [Rattus norvegicus]
Length = 380
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 51 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 110
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQA+R+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 111 IIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 170
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 171 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 194
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 195 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 251
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 252 KRKEPKKKSVKKEYTPFPPPQPESQVD 278
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 37 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 94
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 95 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 129
>gi|402886888|ref|XP_003906847.1| PREDICTED: KRR1 small subunit processome component homolog [Papio
anubis]
Length = 381
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S S + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVRTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVRTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|289740429|gb|ADD18962.1| rRNA processing protein [Glossina morsitans morsitans]
Length = 341
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 163/334 (48%), Positives = 204/334 (61%), Gaps = 89/334 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKE-CWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWD 59
++NAWS++IP FK E N ++E C+ V
Sbjct: 14 VDNAWSIRIPVFKPEHNTQSLIEESCFATV------------------------------ 43
Query: 60 PYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 119
+ +E+YLKE WPLV+ L HF+KAEL++IEGSMTV TT
Sbjct: 44 -------------------FPKYREKYLKEVWPLVQQCLTEHFLKAELNLIEGSMTVKTT 84
Query: 120 RKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRL 179
RKTWDPYIIIKARDMIKL++RSVP+EQ+ RVLQD+I CDIIKIG+LV+ K++F+KRRQRL
Sbjct: 85 RKTWDPYIIIKARDMIKLMARSVPFEQSKRVLQDEIGCDIIKIGSLVRKKEKFIKRRQRL 144
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLV 239
IGPNG TLKSIELLT+CY+LVQG TVAALGP+K
Sbjct: 145 IGPNGATLKSIELLTDCYVLVQGNTVAALGPYK--------------------------- 177
Query: 240 QGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPN 299
GL VR IV DTM N+HPIYN+KALMIKREL KD +L +E+W RFLP
Sbjct: 178 ------------GLQHVRDIVLDTMNNVHPIYNVKALMIKRELMKDAQLAHEDWSRFLPK 225
Query: 300 FKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
FK+K +SKR+ PK +K K +Y+PFPP + ES+ +
Sbjct: 226 FKNKNVSKRQQPKLKKGKDDYSPFPPQRLESKID 259
>gi|403271960|ref|XP_003927864.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Saimiri boliviensis boliviensis]
Length = 388
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+I+LL+RSV YEQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIRLLARSVSYEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+I+LL+RSV YE
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSYE 130
>gi|355786322|gb|EHH66505.1| HIV-1 Rev-binding protein 2 [Macaca fascicularis]
Length = 381
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S S + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|380809140|gb|AFE76445.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|384945036|gb|AFI36123.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S S + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|388452386|ref|NP_001252643.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|387273299|gb|AFJ70144.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S S + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|355564479|gb|EHH20979.1| HIV-1 Rev-binding protein 2 [Macaca mulatta]
Length = 381
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S S + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|74147291|dbj|BAE27537.1| unnamed protein product [Mus musculus]
Length = 389
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 51 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 110
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 111 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 170
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 171 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 194
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 195 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 251
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 252 KRKEPKKKSVKKEYTPFPPPQPESQID 278
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 37 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 94
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 95 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 129
>gi|417399949|gb|JAA46955.1| Putative rrna processing protein [Desmodus rotundus]
Length = 381
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
+GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FRGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|426224177|ref|XP_004006250.1| PREDICTED: KRR1 small subunit processome component homolog [Ovis
aries]
Length = 382
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQVD 279
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|291389602|ref|XP_002711307.1| PREDICTED: HIV-1 rev binding protein 2 [Oryctolagus cuniculus]
Length = 380
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L+ ++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRTQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|395820180|ref|XP_003783452.1| PREDICTED: KRR1 small subunit processome component homolog
[Otolemur garnettii]
Length = 380
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/267 (58%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDDI+CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKSVKKEYTPFPPPQPESQID 279
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|374095412|sp|Q3B7L9.2|KRR1_BOVIN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|296488009|tpg|DAA30122.1| TPA: KRR1 small subunit processome component homolog [Bos taurus]
gi|440893371|gb|ELR46169.1| KRR1 small subunit processome component-like protein [Bos grunniens
mutus]
Length = 382
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 192/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQA+R+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|410965126|ref|XP_003989103.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Felis catus]
Length = 381
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 192/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|426373503|ref|XP_004053641.1| PREDICTED: KRR1 small subunit processome component homolog [Gorilla
gorilla gorilla]
Length = 381
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|189053929|dbj|BAG36436.1| unnamed protein product [Homo sapiens]
Length = 381
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEKSSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEKSSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|380809138|gb|AFE76444.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 349
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S S + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|117676403|ref|NP_008974.5| KRR1 small subunit processome component homolog [Homo sapiens]
gi|50400303|sp|Q13601.4|KRR1_HUMAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Rev-interacting protein 1; Short=Rip-1
gi|119617715|gb|EAW97309.1| HIV-1 Rev binding protein 2 [Homo sapiens]
Length = 381
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|410220502|gb|JAA07470.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261984|gb|JAA18958.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261986|gb|JAA18959.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410305048|gb|JAA31124.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410351423|gb|JAA42315.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
Length = 381
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|297692480|ref|XP_002823579.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pongo abelii]
Length = 381
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|26328295|dbj|BAC27888.1| unnamed protein product [Mus musculus]
Length = 380
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 192/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 51 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPY 110
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 111 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 170
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 171 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 194
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFL FK K ++
Sbjct: 195 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLQQFKHKNVN 251
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 252 KRKEPKKKSVKKEYTPFPPPQPESQ 276
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H +KA LD+I
Sbjct: 37 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLI 94
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 95 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 129
>gi|332220930|ref|XP_003259610.1| PREDICTED: KRR1 small subunit processome component homolog
[Nomascus leucogenys]
Length = 381
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|410046996|ref|XP_003952293.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Pan troglodytes]
Length = 381
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|390350177|ref|XP_786725.2| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Strongylocentrotus purpuratus]
Length = 352
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/251 (58%), Positives = 182/251 (72%), Gaps = 39/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKECW LV+ L H IKA LD+IEGSMTV TTR+TWDP+IIIKARDMIKLL+RSV
Sbjct: 41 REKYLKECWLLVQKTLSEHGIKANLDLIEGSMTVKTTRQTWDPFIIIKARDMIKLLARSV 100
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQA+R+L+DD+S ++IKIG +V+N++RFVKRRQRLIGPNG TLK+IELLTNCY++VQG
Sbjct: 101 PFEQAMRILEDDVSAEVIKIGRMVRNRERFVKRRQRLIGPNGSTLKAIELLTNCYIMVQG 160
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GPHKGL N +IV D
Sbjct: 161 NTVSAVGPHKGLRDVN---------------------------------------KIVTD 181
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
T+ N+HPIYNIK LMIKREL KD KLK+E+W+RFLP F++K L KRK P+K K EYTP
Sbjct: 182 TLNNVHPIYNIKVLMIKRELMKDDKLKSESWDRFLPKFRTKNLKKRKRPQKIGKKKEYTP 241
Query: 323 FPPPQPESEAN 333
FPP QPE++ +
Sbjct: 242 FPPQQPETKID 252
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 60/86 (69%), Gaps = 17/86 (19%)
Query: 12 FKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 54
F KEDNPH +YLKECW LV+ L H IKA LD+IEGSMTV TT
Sbjct: 18 FTKEDNPHGLAGESSFATLFPKYREKYLKECWLLVQKTLSEHGIKANLDLIEGSMTVKTT 77
Query: 55 RKTWDPYIIIKARDMIKLLSRSVPYE 80
R+TWDP+IIIKARDMIKLL+RSVP+E
Sbjct: 78 RQTWDPFIIIKARDMIKLLARSVPFE 103
>gi|344266385|ref|XP_003405261.1| PREDICTED: KRR1 small subunit processome component homolog
[Loxodonta africana]
Length = 381
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 192/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV ++QAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFDQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYVMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV ++
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFD 130
>gi|296212420|ref|XP_002752822.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Callithrix jacchus]
Length = 380
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 193/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALIEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+I+LL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIRLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALIEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+I+LL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSFE 130
>gi|348580525|ref|XP_003476029.1| PREDICTED: KRR1 small subunit processome component homolog [Cavia
porcellus]
Length = 381
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|431892069|gb|ELK02516.1| KRR1 small subunit processome component like protein [Pteropus
alecto]
Length = 380
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQTD 279
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|117938813|gb|AAH05225.1| KRR1 protein [Homo sapiens]
Length = 362
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|19913489|gb|AAH26107.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 192/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++ DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVALDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|149742864|ref|XP_001488486.1| PREDICTED: KRR1 small subunit processome component homolog [Equus
caballus]
Length = 380
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLK+CWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKDCWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLK+CWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSREDNPRGLLEESSFATLFPKYREAYLKDCWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|126339445|ref|XP_001371361.1| PREDICTED: KRR1 small subunit processome component homolog
[Monodelphis domestica]
Length = 383
Score = 299 bits (766), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 154/264 (58%), Positives = 191/264 (72%), Gaps = 39/264 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 54 RGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLIEGSMTVCTTKKTFDPY 113
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSVP+EQA+R+L+D+ +CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 114 IIIRARDLIKLLARSVPFEQAIRILEDNNACDIIKIGSLVRNKERFVKRRQRLIGPKGST 173
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 174 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 197
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKREL+KD +L+++NWERFLP FK K L+
Sbjct: 198 ---FNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELSKDAELRSQNWERFLPQFKHKNLN 254
Query: 307 KRKMPKKRKTKSEYTPFPPPQPES 330
KRK PKK+ K EYTPFPPPQPES
Sbjct: 255 KRKEPKKKTVKKEYTPFPPPQPES 278
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F K+DNP YLKECWPLV+ AL H I A LD+I
Sbjct: 40 DGW--KEPPFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLI 97
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSVP+E
Sbjct: 98 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVPFE 132
>gi|397526018|ref|XP_003832938.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pan paniscus]
Length = 381
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 192/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+L DD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILHDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQ 277
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|332375012|gb|AEE62647.1| unknown [Dendroctonus ponderosae]
Length = 347
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/333 (48%), Positives = 204/333 (61%), Gaps = 87/333 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW MKIP FK E NPH L+E
Sbjct: 16 LENAWEMKIPGFKPEHNPHGMLEES----------------------------------- 40
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
S + + +E+YLK+ WPLV+ L H +KAELD++EGSMTV TTR
Sbjct: 41 -------------SFATLFPQYREQYLKQVWPLVQKTLLAHSVKAELDLVEGSMTVKTTR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+E A RVL+D++ DIIKIG + +NK+RFVKRRQRLI
Sbjct: 88 KTWDPYIIIKARDMIKLMARSVPFEHAKRVLEDNVGSDIIKIGTITRNKERFVKRRQRLI 147
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNGCTL S+EL++NCY+LVQG TVAA+GP+K
Sbjct: 148 GPNGCTLNSMELISNCYILVQGNTVAAVGPYK---------------------------- 179
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
GL QVR+IVEDTM+NIHP+Y +KAL++K++L K+P+L+NENW+RFLP +
Sbjct: 180 -----------GLQQVRKIVEDTMRNIHPMYTLKALLVKKQLLKNPELRNENWDRFLPKY 228
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
+K LSKRK PK +K K YTPFPPPQ E + +
Sbjct: 229 ANKNLSKRKQPKNKKEKKPYTPFPPPQLERKVD 261
>gi|328909187|gb|AEB61261.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 324
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 193/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLK+CWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 56 RGLLEESSFATLFPKYREAYLKDCWPLVQKALNEHHVNAALDLIEGSMTVCTTKKTFDPY 115
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 116 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 175
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 176 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 199
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 200 ---FNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 256
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 257 KRKEPKKKTVKKEYTPFPPPQPESQID 283
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLK+CWPLV+ AL H + A LD+I
Sbjct: 42 DGW--KEPAFSREDNPRGLLEESSFATLFPKYREAYLKDCWPLVQKALNEHHVNAALDLI 99
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 100 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 134
>gi|16877011|gb|AAH16778.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
gi|123993753|gb|ABM84478.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993755|gb|ABM84479.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993757|gb|ABM84480.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|124000011|gb|ABM87514.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
Length = 381
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/246 (60%), Positives = 184/246 (74%), Gaps = 39/246 (15%)
Query: 86 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 145
YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 71 YLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
Query: 146 QAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
QAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G TLK++ELLTNCY++VQG TV
Sbjct: 131 QAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTV 190
Query: 206 AALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMK 265
+A+GP GL +VR++V DTMK
Sbjct: 191 SAIGP---------------------------------------FSGLKEVRKVVLDTMK 211
Query: 266 NIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPP 325
NIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++KRK PKK+ K EYTPFPP
Sbjct: 212 NIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPP 271
Query: 326 PQPESE 331
PQPES+
Sbjct: 272 PQPESQ 277
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYRGAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|73977410|ref|XP_851876.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Canis lupus familiaris]
Length = 380
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 192/267 (71%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ +GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSVIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|21707899|gb|AAH33887.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 192/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQP S+
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPGSQ 277
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|391344944|ref|XP_003746754.1| PREDICTED: KRR1 small subunit processome component homolog
[Metaseiulus occidentalis]
Length = 280
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/252 (57%), Positives = 182/252 (72%), Gaps = 39/252 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WPLVK L H ++AELDVIEGSM V TT++ WDPYIIIKARD+IKLLSRSV
Sbjct: 45 REKYLKEVWPLVKKTLGEHGVEAELDVIEGSMIVKTTKQMWDPYIIIKARDLIKLLSRSV 104
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQA R+L+DDI+CDIIKIG +V+ K RFVKRRQRL+GPNG TLK++E+LT+CY+LVQG
Sbjct: 105 PFEQAARILEDDIACDIIKIGGMVRRKDRFVKRRQRLVGPNGATLKAMEILTDCYVLVQG 164
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ LGP++ GL QVR+IVED
Sbjct: 165 NTVSTLGPYR---------------------------------------GLKQVRKIVED 185
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHPIY+IK +MIKRELAKDP+LK+ENWERFLP +K +SKRK P+ ++TK EY P
Sbjct: 186 CMNNIHPIYHIKTMMIKRELAKDPELKDENWERFLPKLVNKNISKRKQPRVKRTKGEYNP 245
Query: 323 FPPPQPESEANS 334
FPP P+S+ ++
Sbjct: 246 FPPAPPKSKIDT 257
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 65/96 (67%), Gaps = 17/96 (17%)
Query: 2 ENAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDV 44
E+A K+P+F K+DNP +YLKE WPLVK L H ++AELDV
Sbjct: 12 EDADPWKVPDFTKDDNPSGVVCESSFAMLFPKYREKYLKEVWPLVKKTLGEHGVEAELDV 71
Query: 45 IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
IEGSM V TT++ WDPYIIIKARD+IKLLSRSVP+E
Sbjct: 72 IEGSMIVKTTKQMWDPYIIIKARDLIKLLSRSVPFE 107
>gi|83715980|ref|NP_001032908.1| KRR1 small subunit processome component homolog [Bos taurus]
gi|78174356|gb|AAI07551.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Bos taurus]
Length = 382
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 192/267 (71%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQA+R+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+
Sbjct: 172 LKALELLTNCYIMVQGNTVSAI-------------------------------------- 193
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GP L +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 194 -GPFSVLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KRKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|432959058|ref|XP_004086167.1| PREDICTED: KRR1 small subunit processome component homolog [Oryzias
latipes]
Length = 381
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 191/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL IKA LD+IEGSMTV TT+KT+DPY
Sbjct: 50 RGLLEESSFATLFPKYREAYLKECWPLVEKALGDSHIKASLDLIEGSMTVCTTKKTFDPY 109
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
I++ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG +V+N++RFVKRRQRLIGP G T
Sbjct: 110 AIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGTMVRNRERFVKRRQRLIGPKGST 169
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 170 LKALELLTNCYVMVQGNTVSALGP------------------------------------ 193
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
+ GL +VR++V DTMKNIHPIYNIK LMIK+EL++DP+L+ +NWERF+P F+ K LS
Sbjct: 194 ---YNGLKEVRKVVMDTMKNIHPIYNIKTLMIKQELSRDPELRTQNWERFMPKFRHKNLS 250
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPP QPES+
Sbjct: 251 KRKEPKKKSVKKEYTPFPPSQPESK 275
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLKECWPLV+ AL IKA LD+I
Sbjct: 36 DGW--KEPAFSREDNPRGLLEESSFATLFPKYREAYLKECWPLVEKALGDSHIKASLDLI 93
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPY I++ARD+IKLL+RSVP+E
Sbjct: 94 EGSMTVCTTKKTFDPYAIVRARDLIKLLARSVPFE 128
>gi|229367208|gb|ACQ58584.1| KRR1 small subunit processome component homolog [Anoplopoma
fimbria]
Length = 347
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/256 (57%), Positives = 182/256 (71%), Gaps = 39/256 (15%)
Query: 78 PYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKL 137
P +E YLKECWPLV+ AL IK LD+IEGS+TV TT+KT+DPY I++AR +IKL
Sbjct: 24 PLSKYREAYLKECWPLVEKALGESHIKTTLDLIEGSITVCTTKKTYDPYAILRARGLIKL 83
Query: 138 LSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCY 197
L+RSVP+EQAVR+LQDD++CDIIKIG LV+N++RFVKRRQRLIGP G TLK++ELLTNCY
Sbjct: 84 LARSVPFEQAVRILQDDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCY 143
Query: 198 MLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVR 257
++VQG TV+ALGP GL +VR
Sbjct: 144 VMVQGNTVSALGP---------------------------------------FNGLKEVR 164
Query: 258 RIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTK 317
++V DTM+NIHPIYNIK LMIK+EL+KDP L+ ++WERFLP F+ K L+KR+ PKK+ TK
Sbjct: 165 KVVMDTMRNIHPIYNIKTLMIKQELSKDPDLRMQSWERFLPKFRHKNLAKRREPKKKSTK 224
Query: 318 SEYTPFPPPQPESEAN 333
EYTPFPP QPES +
Sbjct: 225 KEYTPFPPSQPESTVD 240
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 50/60 (83%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
YLKECWPLV+ AL IK LD+IEGS+TV TT+KT+DPY I++AR +IKLL+RSVP+E
Sbjct: 32 YLKECWPLVEKALGESHIKTTLDLIEGSITVCTTKKTYDPYAILRARGLIKLLARSVPFE 91
>gi|326911590|ref|XP_003202141.1| PREDICTED: KRR1 small subunit processome component homolog
[Meleagris gallopavo]
Length = 375
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 191/267 (71%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H++ A LD+IEGSMTV TT+KT+DPY
Sbjct: 47 RGLLEESSFATLFPKYREAYLKECWPLVQKALSEHYVNATLDLIEGSMTVTTTKKTFDPY 106
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
II+ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++ FVKRR RL+GP G T
Sbjct: 107 AIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRNRESFVKRRGRLLGPKGST 166
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 167 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 190
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKREL+KDP+L+ +NWERFLP FK K L
Sbjct: 191 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLK 247
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 248 KRKEPKKKNIKKEYTPFPPPQPESQID 274
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLKECWPLV+ AL H++ A LD+I
Sbjct: 33 DGW--KEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALSEHYVNATLDLI 90
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 91 EGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFE 125
>gi|355698774|gb|AES00908.1| KRR1, small subunit processome component,-like protein [Mustela
putorius furo]
Length = 274
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 191/265 (72%), Gaps = 39/265 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 49 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPY 108
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 109 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 168
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ +GP
Sbjct: 169 LKALELLTNCYIMVQGNTVSVIGP------------------------------------ 192
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 193 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 249
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESE 331
KRK PKK+ K EYTPFPPPQPES+
Sbjct: 250 KRKEPKKKTVKKEYTPFPPPQPESQ 274
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 35 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLI 92
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 93 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 127
>gi|301770537|ref|XP_002920686.1| PREDICTED: KRR1 small subunit processome component homolog
[Ailuropoda melanoleuca]
Length = 380
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 191/267 (71%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHISATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ +GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSVIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
K K PKK+ K EYTPFPPPQPES+ +
Sbjct: 253 KCKEPKKKTVKKEYTPFPPPQPESQID 279
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHISATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|348524604|ref|XP_003449813.1| PREDICTED: KRR1 small subunit processome component homolog
[Oreochromis niloticus]
Length = 386
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/267 (56%), Positives = 191/267 (71%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL IK LD+IEGSMTV TT+KT+DPY
Sbjct: 50 RGLLEESSFATLFPKYREAYLKECWPLVEKALGEVHIKPSLDLIEGSMTVCTTKKTFDPY 109
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
I++ARD+IKLL+RSVP+EQAVR+LQDD +CDIIKIG +V++++RFVKRRQRLIGP G T
Sbjct: 110 AIVRARDLIKLLARSVPFEQAVRILQDDTACDIIKIGTMVRSRERFVKRRQRLIGPKGST 169
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 170 LKALELLTNCYVMVQGNTVSALGP------------------------------------ 193
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
+ GL +VR++V DTMKNIHPIYNIK LMIKREL+KDP+L+ +NWERFLP F+ K L+
Sbjct: 194 ---YSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELSKDPELRMQNWERFLPKFRHKNLA 250
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 251 KRKEPKKKSVKKEYTPFPPPQPESKVD 277
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 61/95 (64%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL IK LD+I
Sbjct: 36 DGW--KEPPFTKEDNPRGLLEESSFATLFPKYREAYLKECWPLVEKALGEVHIKPSLDLI 93
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPY I++ARD+IKLL+RSVP+E
Sbjct: 94 EGSMTVCTTKKTFDPYAIVRARDLIKLLARSVPFE 128
>gi|325974458|ref|NP_001038790.2| KRR1 small subunit processome component homolog [Danio rerio]
Length = 376
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 152/249 (61%), Positives = 184/249 (73%), Gaps = 39/249 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV+ AL FI A LD+IEGSMTV TT+KT+DPY II+ARD+IKLL+RSV
Sbjct: 63 REAYLKECWPLVQKALAELFINATLDLIEGSMTVNTTKKTFDPYSIIRARDLIKLLARSV 122
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQAVR+L DD++CDIIKIG LV+N++RFVKRRQRLIGP G TLK++ELLTNCY++VQG
Sbjct: 123 PFEQAVRILDDDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQG 182
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ALGP GL +VR++V D
Sbjct: 183 NTVSALGP---------------------------------------FNGLKEVRKVVLD 203
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TMKNIHPIYNIK LMIKRELA DP+L+ ++W RFLPNF+ K+LSKRK PKK++ K EYTP
Sbjct: 204 TMKNIHPIYNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTP 263
Query: 323 FPPPQPESE 331
FPPPQPES+
Sbjct: 264 FPPPQPESK 272
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 17/90 (18%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K P+F K DNP YLKECWPLV+ AL FI A LD+IEGSMT
Sbjct: 36 KEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEGSMT 95
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 96 VNTTKKTFDPYSIIRARDLIKLLARSVPFE 125
>gi|311255954|ref|XP_003126436.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Sus scrofa]
Length = 375
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 194/267 (72%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 46 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 105
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 106 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 165
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 166 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 189
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 190 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 246
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ TK EYTPFPPPQPES+ +
Sbjct: 247 KRKEPKKKTTKKEYTPFPPPQPESQID 273
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 32 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 89
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 90 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 124
>gi|78395091|gb|AAI07827.1| LOC553525 protein, partial [Danio rerio]
Length = 347
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 152/251 (60%), Positives = 185/251 (73%), Gaps = 39/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV+ AL FI A LD+IEGSMTV TT+KT+DPY II+ARD+IKLL+RSV
Sbjct: 63 REAYLKECWPLVQKALAELFINATLDLIEGSMTVNTTKKTFDPYSIIRARDLIKLLARSV 122
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQAVR+L DD++CDIIKIG LV+N++RFVKRRQRLIGP G TLK++ELLTNCY++VQG
Sbjct: 123 PFEQAVRILDDDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQG 182
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ALGP GL +VR++V D
Sbjct: 183 NTVSALGP---------------------------------------FNGLKEVRKVVLD 203
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TMKNIHPIYNIK LMIKRELA DP+L+ ++W RFLPNF+ K+LSKRK PKK++ K EYTP
Sbjct: 204 TMKNIHPIYNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTP 263
Query: 323 FPPPQPESEAN 333
FPPPQPES+ +
Sbjct: 264 FPPPQPESKID 274
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 17/90 (18%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K P+F K DNP YLKECWPLV+ AL FI A LD+IEGSMT
Sbjct: 36 KEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEGSMT 95
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 96 VNTTKKTFDPYSIIRARDLIKLLARSVPFE 125
>gi|109150093|gb|AAI17594.1| Zgc:136398 [Danio rerio]
Length = 376
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 152/251 (60%), Positives = 185/251 (73%), Gaps = 39/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV+ AL FI A LD+IEGSMTV TT+KT+DPY II+ARD+IKLL+RSV
Sbjct: 63 REAYLKECWPLVQKALAELFINATLDLIEGSMTVNTTKKTFDPYSIIRARDLIKLLARSV 122
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQAVR+L DD++CDIIKIG LV+N++RFVKRRQRLIGP G TLK++ELLTNCY++VQG
Sbjct: 123 PFEQAVRILDDDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMVQG 182
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ALGP GL +VR++V D
Sbjct: 183 NTVSALGP---------------------------------------FNGLKEVRKVVLD 203
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TMKNIHPIYNIK LMIKRELA DP+L+ ++W RFLPNF+ K+LSKRK PKK++ K EYTP
Sbjct: 204 TMKNIHPIYNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTP 263
Query: 323 FPPPQPESEAN 333
FPPPQPES+ +
Sbjct: 264 FPPPQPESKID 274
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 17/90 (18%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K P+F K DNP YLKECWPLV+ AL FI A LD+IEGSMT
Sbjct: 36 KEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEGSMT 95
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 96 VNTTKKTFDPYSIIRARDLIKLLARSVPFE 125
>gi|281351734|gb|EFB27318.1| hypothetical protein PANDA_009447 [Ailuropoda melanoleuca]
Length = 306
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 152/267 (56%), Positives = 191/267 (71%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H I A LD+IEGSMTV TT+KT+DPY
Sbjct: 24 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHISATLDLIEGSMTVCTTKKTFDPY 83
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 84 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 143
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ +GP
Sbjct: 144 LKALELLTNCYIMVQGNTVSVIGP------------------------------------ 167
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 168 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVN 224
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
K K PKK+ K EYTPFPPPQPES+ +
Sbjct: 225 KCKEPKKKTVKKEYTPFPPPQPESQID 251
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H I A LD+I
Sbjct: 10 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHISATLDLI 67
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 68 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 102
>gi|291230085|ref|XP_002735003.1| PREDICTED: dribble-like, partial [Saccoglossus kowalevskii]
Length = 336
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 156/262 (59%), Positives = 188/262 (71%), Gaps = 39/262 (14%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+ S + + +E+YL+ECWP V+ L H IKA LDVIEGSMTV TTRKTWDP+II
Sbjct: 33 MVSESSFATLFPKYREKYLQECWPFVEKTLSDHNIKASLDVIEGSMTVTTTRKTWDPFII 92
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARDMIKLL+RSVP EQAVRVL+D ++ +IIKIG+LV+NK+RFVKRRQRLIGPNG TLK
Sbjct: 93 VKARDMIKLLARSVPAEQAVRVLEDGMAAEIIKIGSLVRNKERFVKRRQRLIGPNGSTLK 152
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IELLT CY++VQG TVAALGP
Sbjct: 153 AIELLTGCYVMVQGNTVAALGP-------------------------------------- 174
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
+ GL VR++ DTMKN+HPIYNIK LMIKREL+KD +LKNE+W+RFLPNF K+ SKR
Sbjct: 175 -YNGLKHVRKLATDTMKNVHPIYNIKTLMIKRELSKDEQLKNESWDRFLPNFHPKSQSKR 233
Query: 309 KMPKKRKTKSEYTPFPPPQPES 330
K PKK++TK +YTPFPPPQPES
Sbjct: 234 KQPKKKRTKKQYTPFPPPQPES 255
>gi|225709722|gb|ACO10707.1| KRR1 small subunit processome component homolog [Caligus
rogercresseyi]
Length = 353
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 169/330 (51%), Positives = 198/330 (60%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
+ENAW+M++PEFK E NP L+E + F T
Sbjct: 25 VENAWAMEVPEFKPEHNPRGMLEE-------------------------SKFATL----- 54
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+ +E+YLKE WPLV L H +KAELD+IEGSM V TTR
Sbjct: 55 ------------------FPKYREKYLKESWPLVVKTLGEHHLKAELDLIEGSMVVKTTR 96
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDP+IIIKARDM+KLL+RSVPYE A+++L D D+IKIGNLV + RFVKRRQRLI
Sbjct: 97 KTWDPFIIIKARDMLKLLARSVPYEHAIKILDDQFGSDVIKIGNLVPKRDRFVKRRQRLI 156
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT CY+LVQG TVAA+GP+
Sbjct: 157 GPNGSTLKSIELLTQCYVLVQGNTVAAVGPY----------------------------- 187
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
+GL QVRRIV DT+ NIHPIYNIK+LMIKREL KD LKNENWERFLP F
Sbjct: 188 ----------QGLKQVRRIVLDTLNNIHPIYNIKSLMIKRELMKDENLKNENWERFLPKF 237
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
++K +SKRK P K+K K EYTPFPPP PES
Sbjct: 238 ENKNISKRKQPLKKKKKKEYTPFPPPMPES 267
>gi|224094097|ref|XP_002193046.1| PREDICTED: KRR1 small subunit processome component homolog
[Taeniopygia guttata]
Length = 386
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 151/267 (56%), Positives = 191/267 (71%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H++ A LD+IEGSMTV TT+KT+DPY
Sbjct: 57 RGLLEESSFATLFPKYREAYLKECWPLVQKALGEHYVNAALDLIEGSMTVTTTKKTFDPY 116
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
II+ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+ ++ F+KRR RL+GP G T
Sbjct: 117 AIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRKRETFIKRRARLLGPKGST 176
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 177 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 200
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKRELAKDP+L+ ++WERFLP FK K L
Sbjct: 201 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDPELRTQSWERFLPKFKRKNLK 257
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ TK EYTPFPPPQPES+ +
Sbjct: 258 KRKEPKKKNTKKEYTPFPPPQPESQVD 284
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLKECWPLV+ AL H++ A LD+I
Sbjct: 43 DGW--KEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALGEHYVNAALDLI 100
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 101 EGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFE 135
>gi|405964866|gb|EKC30308.1| KRR1 small subunit processome component-like protein [Crassostrea
gigas]
Length = 885
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 169/224 (75%), Gaps = 39/224 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E Y+ ECWPLVK L H IKAELD++EGSMTV TT+KTWDPYIIIKARD++KLL+RSV
Sbjct: 56 RENYINECWPLVKKTLGDHNIKAELDLVEGSMTVRTTKKTWDPYIIIKARDLLKLLARSV 115
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQAVRVL+DD +CDIIKIG+L +NK+RFVKRRQRLIGPNG TLK+IE+LT+CY+LVQG
Sbjct: 116 PYEQAVRVLEDDTACDIIKIGSLTRNKERFVKRRQRLIGPNGSTLKAIEILTDCYILVQG 175
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ALGP+K GL +VR+IVED
Sbjct: 176 NTVSALGPYK---------------------------------------GLREVRKIVED 196
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
TMKNIHPIYNIK LMIK+ELAKDP+L+NENWERF+P FKSK +S
Sbjct: 197 TMKNIHPIYNIKTLMIKKELAKDPELRNENWERFIPKFKSKNIS 240
>gi|71896953|ref|NP_001025915.1| KRR1 small subunit processome component homolog [Gallus gallus]
gi|53131247|emb|CAG31803.1| hypothetical protein RCJMB04_11h12 [Gallus gallus]
Length = 381
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 187/267 (70%), Gaps = 39/267 (14%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H++ A LD+IEGSMTV TT+KT+DPY
Sbjct: 47 RGLLEESSFATLFPKYREAYLKECWPLVQKALSEHYVNATLDLIEGSMTVTTTKKTFDPY 106
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
II+ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++ FVK +GP G T
Sbjct: 107 AIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRNRESFVKEEDDFLGPKGST 166
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 167 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 190
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK LMIKREL+KDP+L+ +NWERFLP FK K L
Sbjct: 191 ---FSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLK 247
Query: 307 KRKMPKKRKTKSEYTPFPPPQPESEAN 333
KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 248 KRKEPKKKNIKKEYTPFPPPQPESQID 274
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLKECWPLV+ AL H++ A LD+I
Sbjct: 33 DGW--KEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALSEHYVNATLDLI 90
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 91 EGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFE 125
>gi|449272282|gb|EMC82271.1| KRR1 small subunit processome component like protein, partial
[Columba livia]
Length = 353
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/251 (58%), Positives = 183/251 (72%), Gaps = 39/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV+ AL+ H++ A LD+IEGSMTV TT+KT+DPY II+ARD+IKLL+RSV
Sbjct: 41 REAYLKECWPLVQKALDEHYVNATLDLIEGSMTVTTTKKTFDPYAIIRARDLIKLLARSV 100
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+EQ R+LQDD++CDIIKIG+LV+ + F+KRR RL+GP G TLK++ELLTNCY++VQG
Sbjct: 101 PFEQVFRILQDDVACDIIKIGSLVRKRDTFIKRRGRLLGPKGSTLKALELLTNCYIMVQG 160
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ALGP GL +VR++V D
Sbjct: 161 NTVSALGP---------------------------------------FSGLKEVRKVVLD 181
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TMKNIHPIYNIK LMIKRELAKDP+L++++WERFLP FK K L KRK PKK+ TK EYTP
Sbjct: 182 TMKNIHPIYNIKTLMIKRELAKDPELRSQSWERFLPKFKRKNLKKRKEPKKKNTKKEYTP 241
Query: 323 FPPPQPESEAN 333
FPPPQPES+ +
Sbjct: 242 FPPPQPESQID 252
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLKECWPLV+ AL+ H++ A LD+I
Sbjct: 11 DGW--KEPAFTREDNPKGLLEESSFATLFPKYREAYLKECWPLVQKALDEHYVNATLDLI 68
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 69 EGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFE 103
>gi|225713566|gb|ACO12629.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/330 (49%), Positives = 198/330 (60%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAW+M++PEFK E NP +E + F T
Sbjct: 20 VDNAWAMEVPEFKPEHNPKGMSEE-------------------------SKFATL----- 49
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+ +E+YLK+ WPL+ L + +K ELD+IEGSM V TTR
Sbjct: 50 ------------------FPKYREKYLKDSWPLILKTLGEYNLKGELDLIEGSMVVKTTR 91
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDP+IIIKARDM+KLL+RSVPYE A++VL D+ DIIKIGN++ + RFVKRRQRLI
Sbjct: 92 KTWDPFIIIKARDMLKLLARSVPYEHALKVLNDEFGSDIIKIGNIIVKRDRFVKRRQRLI 151
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT CY+LVQG TV+A+GP+
Sbjct: 152 GPNGSTLKSIELLTQCYILVQGNTVSAVGPY----------------------------- 182
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
+GL QVRRIV DTM NIHPIYNIKALMIKREL KD KLKNENWERFLP F
Sbjct: 183 ----------QGLKQVRRIVIDTMNNIHPIYNIKALMIKRELMKDEKLKNENWERFLPKF 232
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
+++ +SKRK P K+K K EYTPFPPP PES
Sbjct: 233 ENQNISKRKQPLKKKKKKEYTPFPPPMPES 262
>gi|290562854|gb|ADD38821.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/330 (49%), Positives = 198/330 (60%), Gaps = 87/330 (26%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAW+M++PEFK E NP +E + F T
Sbjct: 20 VDNAWAMEVPEFKPEHNPKGMSEE-------------------------SKFATL----- 49
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
+ +E+YLK+ WPL+ L + +K ELD+IEGSM V TTR
Sbjct: 50 ------------------FPKYREKYLKDSWPLILKTLGEYNLKGELDLIEGSMVVKTTR 91
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDP+IIIKARDM+KLL+RSVPYE A++VL D+ DIIKIGN++ + RFVKRRQRLI
Sbjct: 92 KTWDPFIIIKARDMLKLLARSVPYEHALKVLNDEFGSDIIKIGNIIVKRDRFVKRRQRLI 151
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
GPNG TLKSIELLT CY+LVQG TV+A+GP+
Sbjct: 152 GPNGSTLKSIELLTQCYVLVQGNTVSAVGPY----------------------------- 182
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
+GL QVRRIV DTM NIHPIYNIKALMIKREL KD KLKNENWERFLP F
Sbjct: 183 ----------QGLKQVRRIVIDTMNNIHPIYNIKALMIKRELMKDEKLKNENWERFLPKF 232
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
+++ +SKRK P K+K K EYTPFPPP PES
Sbjct: 233 ENQNISKRKQPLKKKKKKEYTPFPPPMPES 262
>gi|449682115|ref|XP_004210000.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Hydra magnipapillata]
Length = 402
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 181/265 (68%), Gaps = 41/265 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
+I+ S + + +E YL+E WPLVK L H I+ LDV+EGSMTV TTRKT+DPYII
Sbjct: 92 LIEESSFATLFPKYRETYLREVWPLVKEKLGSHHIRCALDVVEGSMTVATTRKTFDPYII 151
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARDMIKL+SR V YEQ+ RVL+DD++CDIIKI NLV+NK+RF+KRRQRLIGPNG TLK
Sbjct: 152 LKARDMIKLMSRGVSYEQSCRVLEDDVACDIIKIRNLVRNKERFIKRRQRLIGPNGATLK 211
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++ELLT CY+LVQG TV+A+G K
Sbjct: 212 ALELLTECYILVQGGTVSAIGSFK------------------------------------ 235
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
GL QVR +VE+TMKNIHPIYNIK +MIKRELAKDP LKNENW RFLP FK+K + +
Sbjct: 236 ---GLKQVRNVVEETMKNIHPIYNIKIMMIKRELAKDPTLKNENWSRFLPKFKNKNV--Q 290
Query: 309 KMPKKRKTKSEYTPFPPPQPESEAN 333
+ K K K YTPFPPPQ ES+ +
Sbjct: 291 RKKPKIKEKKPYTPFPPPQQESKID 315
>gi|27371283|gb|AAH41273.1| HRB2 protein, partial [Xenopus laevis]
Length = 257
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/240 (56%), Positives = 176/240 (73%), Gaps = 39/240 (16%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY
Sbjct: 47 RGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEGSMTVTTTKKTFDPY 106
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
+I++ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++RF+KRRQRL+GP G T
Sbjct: 107 VIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGST 166
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 167 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 190
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIKALMIKRELAKDP+L++++WERFLP FK K +S
Sbjct: 191 ---FGGLKEVRKVVSDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVS 247
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 17/86 (19%)
Query: 12 FKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 54
F KEDNP YLKECWPLV+ AL F+KAELD+IEGSMTV TT
Sbjct: 40 FSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEGSMTVTTT 99
Query: 55 RKTWDPYIIIKARDMIKLLSRSVPYE 80
+KT+DPY+I++ARD+IKLL+RSVP+E
Sbjct: 100 KKTFDPYVIVRARDLIKLLARSVPFE 125
>gi|156382113|ref|XP_001632399.1| predicted protein [Nematostella vectensis]
gi|156219454|gb|EDO40336.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/275 (55%), Positives = 193/275 (70%), Gaps = 47/275 (17%)
Query: 59 DPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFT 118
+PY +++ L + +E+YLKE WPLV+ L+ H +K +LD+IEGSMTVFT
Sbjct: 19 NPYGVVEESSFATLFPK------YREKYLKEVWPLVEKELKEHNLKCQLDLIEGSMTVFT 72
Query: 119 TRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQR 178
TRKT+DPYIIIKARDMIKL++RSV +EQA R+L+D+++CDIIKI +LV+NK+RFVKRRQR
Sbjct: 73 TRKTFDPYIIIKARDMIKLMARSVQFEQAKRILEDEVACDIIKIASLVRNKERFVKRRQR 132
Query: 179 LIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYML 238
LIGPN TLK++ELLT CY++VQG TV+ALGP+K
Sbjct: 133 LIGPNCATLKALELLTECYIMVQGNTVSALGPYK-------------------------- 166
Query: 239 VQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
GL QVR++VE+TMKN+HPIYNIK LMIKRELAKDP LKNE+W+RFLP
Sbjct: 167 -------------GLKQVRKVVEETMKNVHPIYNIKTLMIKRELAKDPDLKNESWDRFLP 213
Query: 299 NFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
F+ K + K+K KTK EYTPFPPPQPES+ +
Sbjct: 214 KFRKKAVKKKKK--VPKTKKEYTPFPPPQPESKMD 246
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 17/93 (18%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
++ +F +DNP+ +YLKE WPLV+ L+ H +K +LD+IEGSMT
Sbjct: 10 RVDKFSADDNPYGVVEESSFATLFPKYREKYLKEVWPLVEKELKEHNLKCQLDLIEGSMT 69
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
VFTTRKT+DPYIIIKARDMIKL++RSV +E K
Sbjct: 70 VFTTRKTFDPYIIIKARDMIKLMARSVQFEQAK 102
>gi|303310074|ref|XP_003065050.1| 90S preribosome/SSU processome component KRR1 [Coccidioides
posadasii C735 delta SOWgp]
gi|240104709|gb|EER22905.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320033237|gb|EFW15186.1| ribosomal RNA assembly protein mis3 [Coccidioides posadasii str.
Silveira]
Length = 349
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/253 (56%), Positives = 179/253 (70%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE H I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REVYLKETWPIITRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D +CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILEDGTACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+K GL +VRR+VED
Sbjct: 168 NTVAAMGPYK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDPKL NE+W+RFLP+FK +TLSKRK P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
>gi|115530772|emb|CAL49409.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Xenopus (Silurana) tropicalis]
Length = 249
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/241 (56%), Positives = 177/241 (73%), Gaps = 39/241 (16%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL F+KAELD+IEGSMTV TT+KT+DPY
Sbjct: 48 RGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPY 107
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
+I++ARD+IKLL+RSVP+EQAVR+LQDD++CDIIKIG+LV+N++RF+KRRQRL+GP G T
Sbjct: 108 VIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGST 167
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+ALGP
Sbjct: 168 LKALELLTNCYIMVQGNTVSALGP------------------------------------ 191
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIKALMIKRELAKDP+L++++WERFLP FK K +S
Sbjct: 192 ---FSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVS 248
Query: 307 K 307
K
Sbjct: 249 K 249
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 17/86 (19%)
Query: 12 FKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 54
F KEDNP YLKECWPLV+ AL F+KAELD+IEGSMTV TT
Sbjct: 41 FTKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNESFVKAELDLIEGSMTVTTT 100
Query: 55 RKTWDPYIIIKARDMIKLLSRSVPYE 80
+KT+DPY+I++ARD+IKLL+RSVP+E
Sbjct: 101 KKTFDPYVIVRARDLIKLLARSVPFE 126
>gi|119178764|ref|XP_001241021.1| 90S preribosome/SSU processome component KRR1 [Coccidioides immitis
RS]
gi|392867014|gb|EAS29799.2| ribosomal RNA assembly protein KRR1 [Coccidioides immitis RS]
Length = 349
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 144/253 (56%), Positives = 179/253 (70%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE H I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REVYLKETWPILTRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D +CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILEDGTACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+K GL +VRR+VED
Sbjct: 168 NTVAAMGPYK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDPKL NE+W+RFLP+FK +TLSKRK P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
>gi|154273703|ref|XP_001537703.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
capsulatus NAm1]
gi|150415311|gb|EDN10664.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus NAm1]
Length = 334
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 180/253 (71%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 30 REAYLKETWPMITKALEKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSV 89
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++LQDD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 90 PAPQALKILQDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQG 149
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 150 NTVSAMGPYK---------------------------------------GLKEIRRVVED 170
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK +MIK+ELAKDPKL NE+W+RFLP+FK +TLSKR+ P K K+K Y
Sbjct: 171 CMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVY 230
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 231 TPFPPPQEKSKVD 243
>gi|324517589|gb|ADY46864.1| KRR1 small subunit processome component [Ascaris suum]
Length = 358
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/251 (56%), Positives = 173/251 (68%), Gaps = 46/251 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ECWPLV+ ++ HF+KAELDV+EG+M V TTRKTWDPYI+IKARD++KLL+RSV
Sbjct: 62 REKYLRECWPLVQKTMDEHFLKAELDVLEGTMVVRTTRKTWDPYILIKARDVLKLLARSV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+RVL DDISCDIIKI ++V +K+RFVKRR RL+G NG TLK+IELLT CY+++QG
Sbjct: 122 PYEQAIRVLNDDISCDIIKISSMVSSKERFVKRRARLVGNNGATLKAIELLTQCYVMIQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP ++GL V IVED
Sbjct: 182 GTVAAVGP---------------------------------------YQGLKNVHTIVED 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK-------KRK 315
M NIHPIYNIK LMIKREL KD KLKNENW+RFLP FK K S + + + K
Sbjct: 203 CMHNIHPIYNIKTLMIKRELMKDDKLKNENWDRFLPKFKKKMQSSQSTNQAKKKKAARWK 262
Query: 316 TKSEYTPFPPP 326
K+EYTPFPPP
Sbjct: 263 RKAEYTPFPPP 273
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F +EDNP +YL+ECWPLV+ ++ HF+KAELDV+EG+M V
Sbjct: 36 ISTFSREDNPSGLVCESSFASLFPKYREKYLRECWPLVQKTMDEHFLKAELDVLEGTMVV 95
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYI+IKARD++KLL+RSVPYE
Sbjct: 96 RTTRKTWDPYILIKARDVLKLLARSVPYE 124
>gi|225559135|gb|EEH07418.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus G186AR]
Length = 352
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 180/253 (71%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REAYLKETWPMITKALEKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++LQDD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILQDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK +MIK+ELAKDPKL NE+W+RFLP+FK +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
>gi|330919489|ref|XP_003298637.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora teres f.
teres 0-1]
gi|311328077|gb|EFQ93271.1| hypothetical protein PTT_09405 [Pyrenophora teres f. teres 0-1]
Length = 343
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/253 (55%), Positives = 177/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK W + AL+ I EL+++EGSMTV+TT+KTWDP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLKGSWKFITQALQKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D+++ DIIKI NLV NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAVKILDDEVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+K GL QVRRIVED
Sbjct: 168 NTVAAMGPYK---------------------------------------GLKQVRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM NIHPIY IK LMIK+ELAKDP+L NE+W+RFLPNFK ++LSKR++P K KTK Y
Sbjct: 189 TMHNIHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVNDKTKKTY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+ +S P+++++ YLK W + AL+ I EL+++EGSMTV+TT+KTWDP
Sbjct: 37 ESRFSTLFPKYREQ-----YLKGSWKFITQALQKQGIGCELNLVEGSMTVWTTQKTWDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|189189298|ref|XP_001930988.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972594|gb|EDU40093.1| ribosomal RNA assembly protein mis3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 177/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK W + AL+ I EL+++EGSMTV+TT+KTWDP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLKGSWKFITQALQKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D+++ DIIKI NLV NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAVKILDDEVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+K GL QVRRIVED
Sbjct: 168 NTVAAMGPYK---------------------------------------GLKQVRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM N+HPIY IK LMIK+ELAKDP+L NE+W+RFLPNFK ++LSKR++P K KTK Y
Sbjct: 189 TMHNVHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVNDKTKKTY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+ +S P+++++ YLK W + AL+ I EL+++EGSMTV+TT+KTWDP
Sbjct: 37 ESRFSTLFPKYREQ-----YLKGSWKFITQALQKQGIGCELNLVEGSMTVWTTQKTWDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|240282060|gb|EER45563.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H143]
gi|325088198|gb|EGC41508.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H88]
Length = 351
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 179/253 (70%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REAYLKEIWPMITKALEKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++LQDD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILQDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK +MIK+ELAKDPKL NE+W+RFLP+FK +TLSKR+ P K K K Y
Sbjct: 189 CMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKRKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
>gi|119481157|ref|XP_001260607.1| 90S preribosome/SSU processome component KRR1 [Neosartorya fischeri
NRRL 181]
gi|119408761|gb|EAW18710.1| rRNA assembly protein Mis3, putative [Neosartorya fischeri NRRL
181]
Length = 358
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/253 (55%), Positives = 178/253 (70%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP+V ALE H I LD++EGSMTV TTRKT+DP I+KARD+IKLLSRSV
Sbjct: 48 REQYLKEAWPVVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI N V+NK+RFVKRRQRL+GP+G TLK++ELLT+ Y+LVQG
Sbjct: 108 PVQQALKILEDGVACDIIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+KG L +VRR+V D
Sbjct: 168 NTVAAMGPYKG---------------------------------------LKEVRRVVND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR++P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPYKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|71001580|ref|XP_755471.1| rRNA assembly protein Mis3 [Aspergillus fumigatus Af293]
gi|66853109|gb|EAL93433.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus Af293]
gi|159129540|gb|EDP54654.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus A1163]
Length = 358
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/253 (55%), Positives = 178/253 (70%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP+V ALE H I LD++EGSMTV TTRKT+DP I+KARD+IKLLSRSV
Sbjct: 48 REQYLKEAWPVVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI N V+NK+RFVKRRQRL+GP+G TLK++ELLT+ Y+LVQG
Sbjct: 108 PVQQALKILEDGVACDIIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+KG L +VRR+V D
Sbjct: 168 NTVAAMGPYKG---------------------------------------LKEVRRVVND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR++P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPYKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|239614293|gb|EEQ91280.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ER-3]
gi|327356334|gb|EGE85191.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 179/253 (70%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REAYLKETWPMITRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELL+N Y+LVQG
Sbjct: 108 PAPQALQILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL ++RR+VED
Sbjct: 168 NTVSVMGPYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK +MIK+ELAKDPKL NE+W+RFLP+FK +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
>gi|261204337|ref|XP_002629382.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
dermatitidis SLH14081]
gi|239587167|gb|EEQ69810.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis
SLH14081]
Length = 352
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 179/253 (70%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REAYLKETWPMITRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELL+N Y+LVQG
Sbjct: 108 PALQALQILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL ++RR+VED
Sbjct: 168 NTVSVMGPYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK +MIK+ELAKDPKL NE+W+RFLP+FK +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
>gi|212543807|ref|XP_002152058.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066965|gb|EEA21058.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 309
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ LE I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 8 REVYLKEAWPLITRTLEKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 67
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI NLV NK+RFVKRRQR++GPNG TLK++ELLT+ Y+LVQG
Sbjct: 68 PVQQALKILEDGVACDIIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTSTYILVQG 127
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR++ED
Sbjct: 128 NTVSAMGPFK---------------------------------------GLKEVRRVIED 148
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
M NIHPIY+IK LMIKRELAKDP L E+W+RFLPNFK +TLSKR++P K KS+ Y
Sbjct: 149 CMANIHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRVPHKVTDKSQKAY 208
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 209 TPFPPPQEKSKID 221
>gi|1326184|gb|AAB00557.1| Rev interacting protein Rip-1 [Homo sapiens]
Length = 288
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/242 (56%), Positives = 174/242 (71%), Gaps = 39/242 (16%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
GL +VR++V DTMKNIHPIYNIK+LMIKRELAKD +L++++WERFLP FK K ++
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVN 252
Query: 307 KR 308
KR
Sbjct: 253 KR 254
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|358365716|dbj|GAA82338.1| ribosomal RNA assembly protein mis3 [Aspergillus kawachii IFO 4308]
Length = 368
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/253 (55%), Positives = 176/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP+V ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLLSRSV
Sbjct: 48 REVYLKEAWPVVTRALEKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+DD++CDIIKI N V+NK+RFVKRRQR++GP G TLK++ELLT+ Y+LVQG
Sbjct: 108 PVQQALKILEDDVACDIIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+K GL +VRRI+ D
Sbjct: 168 NTVAAMGPYK---------------------------------------GLKEVRRIIND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR++P K KTK Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPFKVTDKTKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|340519761|gb|EGR49999.1| hypothetical protein TRIREDRAFT_76833 [Trichoderma reesei QM6a]
Length = 320
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 141/253 (55%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKEVWPLITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D ++CDIIKI NLV+NK+RFVKRRQR++GPNG TLK++ELLT Y+LV G
Sbjct: 108 PAPQAVKILDDGVACDIIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKELRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLSKR++P K KTK Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTDKTKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLKE WPL+ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLKEVWPLITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVP 108
>gi|348690682|gb|EGZ30496.1| hypothetical protein PHYSODRAFT_477367 [Phytophthora sojae]
Length = 396
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 181/262 (69%), Gaps = 40/262 (15%)
Query: 64 IKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTW 123
IK ++++ S + + +E+YL+E WP+V AL+ H I EL+++EGSMTV TTRKT
Sbjct: 57 IKMPNLLEESSFATLFPKYREKYLREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTT 116
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPN 183
DPYI++KARD+IKLL+RS+P QAV++L DD+ CDIIKIG LV+NK+RFVKRRQRL+GP+
Sbjct: 117 DPYIVLKARDLIKLLARSIPVNQAVKILDDDVQCDIIKIGGLVRNKERFVKRRQRLVGPD 176
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQT 243
G TLK+IELLTNCY+LVQG TV+A+G
Sbjct: 177 GATLKAIELLTNCYVLVQGNTVSAMG---------------------------------- 202
Query: 244 VAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSK 303
+ GL VR+IVED NIHPIYN+K LMIKRELAKDPKLK+ENWERFLPNFK +
Sbjct: 203 -----SYHGLRNVRKIVEDCFANIHPIYNVKRLMIKRELAKDPKLKDENWERFLPNFKKQ 257
Query: 304 TLSKRKMPKKRKTKSEYTPFPP 325
+ + K PKK + K EYTPFPP
Sbjct: 258 NV-QTKKPKKVREKKEYTPFPP 278
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E WP+V AL+ H I EL+++EGSMTV TTRKT DPY
Sbjct: 65 ESSFATLFPKYREK-----YLREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTTDPY 119
Query: 62 IIIKARDMIKLLSRSVP 78
I++KARD+IKLL+RS+P
Sbjct: 120 IVLKARDLIKLLARSIP 136
>gi|212543805|ref|XP_002152057.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066964|gb|EEA21057.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 349
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ LE I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLITRTLEKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI NLV NK+RFVKRRQR++GPNG TLK++ELLT+ Y+LVQG
Sbjct: 108 PVQQALKILEDGVACDIIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR++ED
Sbjct: 168 NTVSAMGPFK---------------------------------------GLKEVRRVIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
M NIHPIY+IK LMIKRELAKDP L E+W+RFLPNFK +TLSKR++P K KS+ Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRVPHKVTDKSQKAY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKID 261
>gi|345560274|gb|EGX43399.1| hypothetical protein AOL_s00215g135 [Arthrobotrys oligospora ATCC
24927]
Length = 352
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WPL+ L I A LDV+EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLREAWPLITRTLAKSGINAILDVVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKIG+LV N+Q+F KRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAIKILEDDVACDIIKIGSLVPNRQKFAKRRQRMVGPNGSTLKALELLTGCYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G +K GL ++RR+VED
Sbjct: 168 TTVSAMGGYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
MKNIHPIY+IK LMIKRELAKDP L NE+W+RFLP FK KTLSKR+ P K KS Y
Sbjct: 189 CMKNIHPIYHIKELMIKRELAKDPALANESWDRFLPQFKKKTLSKRRKPFKVTDKSRKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 53/89 (59%), Gaps = 18/89 (20%)
Query: 8 KIPEFKKEDNP------------------HEYLKECWPLVKNALELHFIKAELDVIEGSM 49
KI EFK EDN +YL+E WPL+ L I A LDV+EGSM
Sbjct: 20 KIDEFKPEDNKGGAFLQESDFKVLFPRYREQYLREAWPLITRTLAKSGINAILDVVEGSM 79
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
TV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 80 TVKTTRKTFDPAAILNARDLIKLLARSVP 108
>gi|145232010|ref|XP_001399471.1| 90S preribosome/SSU processome component KRR1 [Aspergillus niger
CBS 513.88]
gi|134056381|emb|CAK47615.1| unnamed protein product [Aspergillus niger]
gi|350634424|gb|EHA22786.1| hypothetical protein ASPNIDRAFT_55540 [Aspergillus niger ATCC 1015]
Length = 367
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 176/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP+V ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLLSRSV
Sbjct: 48 REVYLKEAWPVVTRALEKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+DD++CDIIKI N V+NK+RFVKRRQR++GP G TLK++ELLT+ Y+LVQG
Sbjct: 108 PVQQALKILEDDVACDIIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRRI+ D
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEVRRIIND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR++P K KTK Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPFKVTDKTKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|358385056|gb|EHK22653.1| hypothetical protein TRIVIDRAFT_179973 [Trichoderma virens Gv29-8]
Length = 320
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L+D ++CDIIKI NLV+NK+RFVKRRQR++GPNG TLK++ELLT Y+LV G
Sbjct: 108 PAPQAVKILEDGVACDIIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKELRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLSKR++P K K K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTDKAKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLKE WPL+ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLKEAWPLITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVP 108
>gi|121715638|ref|XP_001275428.1| 90S preribosome/SSU processome component KRR1 [Aspergillus clavatus
NRRL 1]
gi|119403585|gb|EAW14002.1| rRNA assembly protein Mis3, putative [Aspergillus clavatus NRRL 1]
Length = 354
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 176/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP+V ALE H I LD++EGSMTV TTRKT+DP I+K RD+IKLLSRSV
Sbjct: 48 REQYLKEAWPVVTRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKGRDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L D+++CDIIKI + V+NK+RFVKRRQRL+GP+G TLK++ELLT+ Y+LVQG
Sbjct: 108 PVQQALKILDDEVACDIIKIRSQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+KG L +VRR++ D
Sbjct: 168 NTVAAMGPYKG---------------------------------------LKEVRRVIND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDKSKKAY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|451848013|gb|EMD61319.1| hypothetical protein COCSADRAFT_201760 [Cochliobolus sativus
ND90Pr]
Length = 344
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 177/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK W + AL+ I EL+++EGSMTV+TT+KT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLKGSWKFITQALQRLGIGCELNLVEGSMTVWTTKKTYDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++ DIIKI NLV NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAIKILEDDVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GP+K GL QVRRI+ED
Sbjct: 168 NTVACMGPYK---------------------------------------GLKQVRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM NIHPIY IK LMIK+ELAKDP+L NE+W+RFLPNFK ++LSKR++P K K+K Y
Sbjct: 189 TMHNIHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRIPHKVNDKSKKPY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+ +S P+++++ YLK W + AL+ I EL+++EGSMTV+TT+KT+DP
Sbjct: 37 ESRFSTLFPKYREQ-----YLKGSWKFITQALQRLGIGCELNLVEGSMTVWTTKKTYDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|296420562|ref|XP_002839838.1| 90S preribosome/SSU processome component KRR1 [Tuber melanosporum
Mel28]
gi|295636044|emb|CAZ84029.1| unnamed protein product [Tuber melanosporum]
Length = 344
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/271 (52%), Positives = 180/271 (66%), Gaps = 41/271 (15%)
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWD 124
KA I+ S + + +E YL+E WPL+ LE H I LD++EGSMTV TTRKT+D
Sbjct: 30 KAGAFIEESSFATLFPKYRETYLREAWPLITRTLEKHHIACTLDLVEGSMTVKTTRKTYD 89
Query: 125 PYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNG 184
P I+ ARD+IKLL+RSVP QA+++L+D ++CDIIKIGNLV+NK+RFVKRRQR++GP G
Sbjct: 90 PAAILNARDLIKLLARSVPVPQAIKILEDGVACDIIKIGNLVRNKERFVKRRQRILGPGG 149
Query: 185 CTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTV 244
TLK++ELLT CY+LVQG TV+A+G +KG
Sbjct: 150 STLKALELLTGCYILVQGSTVSAMGGYKG------------------------------- 178
Query: 245 AALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKT 304
L +VRR+VE M NIHPIY+IK LMIKREL KDP+L NENW+RFLP FK +T
Sbjct: 179 --------LKEVRRVVEGCMDNIHPIYHIKELMIKRELQKDPELVNENWDRFLPQFKKRT 230
Query: 305 LSKRKMPKK--RKTKSEYTPFPPPQPESEAN 333
LSKRK P+K K+K YTPFPP +S+ +
Sbjct: 231 LSKRKKPRKITDKSKKTYTPFPPAPEKSKID 261
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 53/89 (59%), Gaps = 18/89 (20%)
Query: 8 KIPEFKKEDNP------------------HEYLKECWPLVKNALELHFIKAELDVIEGSM 49
KI EFK EDN YL+E WPL+ LE H I LD++EGSM
Sbjct: 20 KIEEFKPEDNKAGAFIEESSFATLFPKYRETYLREAWPLITRTLEKHHIACTLDLVEGSM 79
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
TV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 80 TVKTTRKTYDPAAILNARDLIKLLARSVP 108
>gi|298708603|emb|CBJ26090.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 398
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 133/245 (54%), Positives = 170/245 (69%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP+V AL+ + ELD+IEGSMTV TTRKT DPY+I+KARD+IKLL+RS+
Sbjct: 46 REKYLREVWPIVTKALQKRGVSCELDLIEGSMTVRTTRKTRDPYVIVKARDLIKLLARSI 105
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+RVL+DD++CDIIKIG +V+NK+RFVKRR RL+GP+G TLK++ELLT CY+LVQG
Sbjct: 106 PAQQALRVLEDDVNCDIIKIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQG 165
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G + +GL QVR++V D
Sbjct: 166 NTVSAMGSY---------------------------------------QGLKQVRKVVTD 186
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M N+HP+YNIK LMI+RELAKDP LK+ENWERFLP F K + KRK P + K YTP
Sbjct: 187 CMNNVHPVYNIKTLMIRRELAKDPNLKDENWERFLPQFHKKNV-KRKKPAVIREKKVYTP 245
Query: 323 FPPPQ 327
FPP Q
Sbjct: 246 FPPAQ 250
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 59/79 (74%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E WP+V AL+ + ELD+IEGSMTV TTRKT DPY
Sbjct: 35 ESSFATLFPKYR-----EKYLREVWPIVTKALQKRGVSCELDLIEGSMTVRTTRKTRDPY 89
Query: 62 IIIKARDMIKLLSRSVPYE 80
+I+KARD+IKLL+RS+P +
Sbjct: 90 VIVKARDLIKLLARSIPAQ 108
>gi|448511533|ref|XP_003866553.1| Krr1 protein [Candida orthopsilosis Co 90-125]
gi|380350891|emb|CCG21114.1| Krr1 protein [Candida orthopsilosis Co 90-125]
Length = 364
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 173/246 (70%), Gaps = 40/246 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V AL+ HFI+ ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSV
Sbjct: 49 REQYLRSIWSDVTKALDKHFIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRR+VED
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT-KSEYT 321
MKNIHPIY IK LMIK+EL K+P+L +E+W RFLP+FK + ++++K+ KK K K YT
Sbjct: 190 CMKNIHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVSKKNKAEKKVYT 249
Query: 322 PFPPPQ 327
PFPP Q
Sbjct: 250 PFPPAQ 255
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+YL+ W V AL+ HFI+ ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSVP+
Sbjct: 51 QYLRSIWSDVTKALDKHFIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPF 110
>gi|242787818|ref|XP_002481093.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
stipitatus ATCC 10500]
gi|218721240|gb|EED20659.1| rRNA assembly protein Mis3, putative [Talaromyces stipitatus ATCC
10500]
Length = 348
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ LE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLLSRSV
Sbjct: 48 REVYLKEAWPMITRTLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI +LV NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 108 PAQQAIKILEDGVACDIIKIRSLVNNKERFVKRRQRILGPSGSTLKALELLTGTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL +VRR++ED
Sbjct: 168 NTVSTMGPFK---------------------------------------GLKEVRRVIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
M NIHPIY+IK LMIKRELAKDP L E+W+RFLPNFK +TLSKR++P K KS+ Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRVPHKVTDKSQKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKID 261
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 54/91 (59%), Gaps = 18/91 (19%)
Query: 8 KIPEFKKEDNP------------------HEYLKECWPLVKNALELHFIKAELDVIEGSM 49
KI EFK EDN YLKE WP++ LE H I LD++EGSM
Sbjct: 20 KIEEFKPEDNAGGTFAEESSFMTLFPKYREVYLKEAWPMITRTLEKHGIACTLDLVEGSM 79
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TV TTRKT+DP I+ ARD+IKLLSRSVP +
Sbjct: 80 TVKTTRKTFDPAAILNARDLIKLLSRSVPAQ 110
>gi|451998791|gb|EMD91254.1| hypothetical protein COCHEDRAFT_1135572 [Cochliobolus
heterostrophus C5]
Length = 344
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 177/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK W + AL+ I EL+++EGSMTV+TT+KT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLKGSWKFITQALQRLGIGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++ DIIKI NLV NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAIKILEDDVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GP+K GL QVRRI+ED
Sbjct: 168 NTVACMGPYK---------------------------------------GLKQVRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM NIHPIY IK LMIK+ELAKDP+L NE+W+RFLPNFK ++LSKR++P K K+K Y
Sbjct: 189 TMHNIHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRIPHKVNDKSKKPY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+ +S P+++++ YLK W + AL+ I EL+++EGSMTV+TT+KT+DP
Sbjct: 37 ESRFSTLFPKYREQ-----YLKGSWKFITQALQRLGIGCELNLVEGSMTVWTTQKTYDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|115384518|ref|XP_001208806.1| 90S preribosome/SSU processome component KRR1 [Aspergillus terreus
NIH2624]
gi|114196498|gb|EAU38198.1| ribosomal RNA assembly protein mis3 [Aspergillus terreus NIH2624]
Length = 360
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLLSRSV
Sbjct: 48 REVYLKEAWPVITRALEKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+DD++CDIIKI N V+NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 108 PVQQALKILEDDVACDIIKIRNQVRNKERFVKRRQRILGPSGSTLKALELLTGTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+KG L +VRR+V D
Sbjct: 168 NTVAAMGPYKG---------------------------------------LKEVRRVVND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|440790291|gb|ELR11574.1| KH domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 406
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/267 (54%), Positives = 176/267 (65%), Gaps = 40/267 (14%)
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWD 124
KA ++ S + + +E YL+E W + AL+ I L++IEGSMTV TTRKTWD
Sbjct: 49 KAGSFLEESSFATLFPKYRESYLRESWAAITKALKDVGIDCTLNLIEGSMTVRTTRKTWD 108
Query: 125 PYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNG 184
PY+I+KARDMIKLL+RSVP+ QAVRVL DD++CD+IKIG +V NK+RFVKRRQRLIGPNG
Sbjct: 109 PYMILKARDMIKLLARSVPFPQAVRVLGDDVACDVIKIGGMVHNKERFVKRRQRLIGPNG 168
Query: 185 CTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTV 244
TLK+IELLT CY+LVQG TV+ +GP+K
Sbjct: 169 ATLKAIELLTECYVLVQGNTVSVMGPYK-------------------------------- 196
Query: 245 AALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKT 304
GL QVR IVED M NIHPIYNIKALMIKRELAKDP+L ENW+RFLP FK
Sbjct: 197 -------GLKQVRNIVEDCMNNIHPIYNIKALMIKRELAKDPQLATENWDRFLPKFKKNN 249
Query: 305 LSKRKMPKKRKTKSEYTPFPPPQPESE 331
+ K+ KR+ K EYTPFPP Q S+
Sbjct: 250 VKKKAAKPKRE-KKEYTPFPPAQQPSK 275
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ YL+E W + AL+ I L++IEGSMTV TTRKTWDPY
Sbjct: 56 ESSFATLFPKYR-----ESYLRESWAAITKALKDVGIDCTLNLIEGSMTVRTTRKTWDPY 110
Query: 62 IIIKARDMIKLLSRSVPY 79
+I+KARDMIKLL+RSVP+
Sbjct: 111 MILKARDMIKLLARSVPF 128
>gi|225679901|gb|EEH18185.1| ribosomal RNA assembly protein mis3 [Paracoccidioides brasiliensis
Pb03]
gi|226291669|gb|EEH47097.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides brasiliensis
Pb18]
Length = 359
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 177/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP+V ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REAYLKETWPMVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILEDGVACDIIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK +MIK+ELAKDPKL NE+W+RFLP+FK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|259479960|tpe|CBF70657.1| TPA: rRNA assembly protein Mis3, putative (AFU_orthologue;
AFUA_2G11380) [Aspergillus nidulans FGSC A4]
Length = 358
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP+V ALE H I LD++EGSMTV TTRKT+DP I+KARD+IKLLSRSV
Sbjct: 48 REVYLKEAWPVVTRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI N V+NK+RFVKRRQR++GP G TLK++ELLT Y+LVQG
Sbjct: 108 PVQQALKILEDGVACDIIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRRIV+D
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEVRRIVDD 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L +E+W+RFLPNFK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRTPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|358393418|gb|EHK42819.1| hypothetical protein TRIATDRAFT_300850 [Trichoderma atroviride IMI
206040]
Length = 320
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D ++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT Y+LV G
Sbjct: 108 PAPQAVKILDDGVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTETYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKELRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLSKR++P K K K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTDKAKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLKE WPL+ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLKEAWPLITKALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVP 108
>gi|406865668|gb|EKD18709.1| ribosomal RNA assembly protein KRR1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 350
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 177/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPL+ +LE + I LD++EGSMTV TTRKT+DP ++ ARD+IKLL+RSV
Sbjct: 48 REIYLREAWPLITRSLEKYGIACSLDLVEGSMTVKTTRKTFDPAAVLNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L+D ++CDIIKI NLV+NK++FVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAVKILEDGMACDIIKIRNLVRNKEKFVKRRQRILGPNGSTLKALELLTECYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP+K GL +VRRI+ED
Sbjct: 168 NTVAAMGPYK---------------------------------------GLKEVRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP+FK + LSKR++P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRVPLKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q ES+ +
Sbjct: 249 TPFPPKQEESKID 261
>gi|68484447|ref|XP_713834.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|68484528|ref|XP_713795.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435308|gb|EAK94692.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435349|gb|EAK94732.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|238878458|gb|EEQ42096.1| ribosomal RNA assembly protein mis3 [Candida albicans WO-1]
Length = 358
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 137/246 (55%), Positives = 170/246 (69%), Gaps = 40/246 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V AL+ HFIK ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSV
Sbjct: 49 REQYLRSIWSDVTKALDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-KRKMPKKRKTKSEYT 321
MKNIHPIY IK LMIK+EL+K+P L NE+W RFLP+FK + ++ K+K KK K YT
Sbjct: 190 CMKNIHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKTSKKSVEKKVYT 249
Query: 322 PFPPPQ 327
PFPP Q
Sbjct: 250 PFPPAQ 255
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+YL+ W V AL+ HFIK ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSVP+
Sbjct: 51 QYLRSIWSDVTKALDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPF 110
>gi|67539410|ref|XP_663479.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
gi|40739194|gb|EAA58384.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
Length = 348
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP+V ALE H I LD++EGSMTV TTRKT+DP I+KARD+IKLLSRSV
Sbjct: 48 REVYLKEAWPVVTRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI N V+NK+RFVKRRQR++GP G TLK++ELLT Y+LVQG
Sbjct: 108 PVQQALKILEDGVACDIIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRRIV+D
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEVRRIVDD 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L +E+W+RFLPNFK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRTPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|452836496|gb|EME38440.1| hypothetical protein DOTSEDRAFT_92479 [Dothistroma septosporum
NZE10]
Length = 349
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 172/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK WP++ ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLLSRSV
Sbjct: 54 REAYLKASWPMITRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLSRSV 113
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D +CD+IKI LV+NK RFVKRRQR++GPNG TLK++ELLT Y+LVQG
Sbjct: 114 PAPQAIKILEDGTACDVIKIRGLVRNKDRFVKRRQRILGPNGSTLKALELLTQTYILVQG 173
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K L +VRR+VED
Sbjct: 174 NTVSVMG---------------------------------------GYKSLKEVRRVVED 194
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK--KRKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+LKNENWERFLP+FK + LSKR++P+ K+K Y
Sbjct: 195 CMANIHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRVPRVVNDKSKKVY 254
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 255 TPFPPPQEQSKVD 267
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ YLK WP++ ALE H I LD++EGSMTV TTRKT+DP
Sbjct: 43 ESSFATLFPKYR-----EAYLKASWPMITRALEKHGIACTLDLVEGSMTVKTTRKTYDPA 97
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLLSRSVP
Sbjct: 98 AILNARDLIKLLSRSVP 114
>gi|19112865|ref|NP_596073.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe 972h-]
gi|26396376|sp|O74777.1|KRR1_SCHPO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein mis3
gi|3738208|emb|CAA21263.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe]
gi|5578744|dbj|BAA82594.1| Mis3 [Schizosaccharomyces pombe]
Length = 327
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 139/251 (55%), Positives = 175/251 (69%), Gaps = 40/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V AL+ I LD++EGSMTV TTRKT+DPY I+ ARD+IKLL+RSV
Sbjct: 62 REKYLREVWPHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV+++QD ++CDIIKIGN+++NK+RFVKRRQRLIG NG TLK++ELLT CY+LVQG
Sbjct: 122 PFPQAVKIMQDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +G +K GL +VRRIVED
Sbjct: 182 TTVAVMGGYK---------------------------------------GLKEVRRIVED 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLP FK + +++RK K R+TK EYTP
Sbjct: 203 CMHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKPAKIRETK-EYTP 261
Query: 323 FPPPQPESEAN 333
FPP QP S+ +
Sbjct: 262 FPPAQPPSKLD 272
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E WP V AL+ I LD++EGSMTV TTRKT+DPY
Sbjct: 51 ESSFATLFPKYREK-----YLREVWPHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPY 105
Query: 62 IIIKARDMIKLLSRSVPY 79
I+ ARD+IKLL+RSVP+
Sbjct: 106 SILDARDLIKLLARSVPF 123
>gi|241949981|ref|XP_002417713.1| 90S preribosome/SSU processome component KRR1 [Candida dubliniensis
CD36]
gi|223641051|emb|CAX45425.1| ribosomal RNA assembly protein, putative [Candida dubliniensis
CD36]
Length = 370
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 137/246 (55%), Positives = 170/246 (69%), Gaps = 40/246 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V AL+ HFIK ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSV
Sbjct: 49 REQYLRSIWSDVTKALDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-KRKMPKKRKTKSEYT 321
MKNIHPIY IK LMIK+EL+K+P L NE+W RFLP+FK + ++ K+K KK K YT
Sbjct: 190 CMKNIHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKTSKKSIEKKVYT 249
Query: 322 PFPPPQ 327
PFPP Q
Sbjct: 250 PFPPAQ 255
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+YL+ W V AL+ HFIK ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSVP+
Sbjct: 51 QYLRSIWSDVTKALDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPF 110
>gi|296817933|ref|XP_002849303.1| 90S preribosome/SSU processome component KRR1 [Arthroderma otae CBS
113480]
gi|238839756|gb|EEQ29418.1| ribosomal RNA assembly protein mis3 [Arthroderma otae CBS 113480]
Length = 349
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 176/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPL+ ALE + I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REIYLREVWPLITKALEKNGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRR+VED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP K +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPQLAEESWDRFLPQLKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|126132748|ref|XP_001382899.1| 90S preribosome/SSU processome component KRR1 [Scheffersomyces
stipitis CBS 6054]
gi|126094724|gb|ABN64870.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 356
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 130/245 (53%), Positives = 169/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V +LE HFIK ELD++EG+MTV TT KT+DP II+KARD+IKLL+RSV
Sbjct: 49 REQYLRSIWADVTKSLEKHFIKCELDLVEGAMTVKTTTKTFDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M+N+HPIY IK LMIK+EL+K P+L E+W RFLP+FK + ++++K ++ K YTP
Sbjct: 190 CMRNVHPIYYIKELMIKQELSKKPELAEEDWSRFLPSFKKRNVARKKAKSSKREKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+YL+ W V +LE HFIK ELD++EG+MTV TT KT+DP II+KARD+IKLL+RSVP+
Sbjct: 51 QYLRSIWADVTKSLEKHFIKCELDLVEGAMTVKTTTKTFDPAIILKARDLIKLLARSVPF 110
>gi|170593983|ref|XP_001901743.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
gi|158590687|gb|EDP29302.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
Length = 350
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 140/260 (53%), Positives = 173/260 (66%), Gaps = 46/260 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S ++ + +E+Y++ECWPL++ E HF+KA+LDV+EG++ V TTRKTWDPYIIIKARD
Sbjct: 46 SFAILFPKYREKYIRECWPLIQKVFEEHFLKADLDVLEGTVVVKTTRKTWDPYIIIKARD 105
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
++KL+SRSVPYEQAVRVLQDD + +IIKI ++V NK+RFVKRR RLIG G TLK+IELL
Sbjct: 106 VLKLISRSVPYEQAVRVLQDDTASEIIKISSMVANKERFVKRRARLIGNEGATLKAIELL 165
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY++VQG TVAA+GP ++GL
Sbjct: 166 TKCYIMVQGSTVAAVGP---------------------------------------YEGL 186
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK- 312
VR IVED M NIHPIYNIK LMIKREL KD LKNENW+RFLP FK K + +
Sbjct: 187 KHVRMIVEDCMNNIHPIYNIKTLMIKRELMKDENLKNENWDRFLPKFKKKVQPSQSTNQA 246
Query: 313 ------KRKTKSEYTPFPPP 326
+ K K+EYTPFPPP
Sbjct: 247 KKKKAARWKKKAEYTPFPPP 266
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y++ECWPL++ E HF+KA+LDV+EG++ V
Sbjct: 29 ISTFSKEDNPNGLVCESSFAILFPKYREKYIRECWPLIQKVFEEHFLKADLDVLEGTVVV 88
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYIIIKARD++KL+SRSVPYE
Sbjct: 89 KTTRKTWDPYIIIKARDVLKLISRSVPYE 117
>gi|302500722|ref|XP_003012354.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
gi|291175912|gb|EFE31714.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
Length = 348
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPLV ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REIYLREVWPLVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 108 PAPQALKILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRRIVED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKEVRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP K +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|326482313|gb|EGE06323.1| ribosomal RNA assembly protein mis3 [Trichophyton equinum CBS
127.97]
Length = 348
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPLV ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REIYLREVWPLVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 108 PAPQALKILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRRIVED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKEVRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP K +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|237832063|ref|XP_002365329.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|211962993|gb|EEA98188.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|221486813|gb|EEE25059.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii GT1]
gi|221506516|gb|EEE32133.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii VEG]
Length = 394
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/249 (55%), Positives = 170/249 (68%), Gaps = 41/249 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP VK AL HF+KAELD+IEGSMTV TT+KT+DPYIIIKARDMIKLL+RSV
Sbjct: 86 REKYLKEVWPEVKRALGQHFVKAELDLIEGSMTVRTTKKTFDPYIIIKARDMIKLLARSV 145
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA ++L D + CDIIKIG +V+NK++FVKRRQRL+GPNG TLK+IELLT CY+LVQG
Sbjct: 146 PIAQARKILDDGMFCDIIKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQG 205
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV+ +G H KG+ V+R+VED
Sbjct: 206 QTVSVMGTH---------------------------------------KGIKVVQRLVED 226
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK--RKMPKKRKTKSEY 320
MKNIHP+Y+IK LMIKREL KDP L ENWERFLP FK + + + R+ K+K+KS +
Sbjct: 227 CMKNIHPVYHIKELMIKRELEKDPALVEENWERFLPQFKKRNVQRKARRAAIKKKSKSLF 286
Query: 321 TPFPPPQPE 329
P P+ E
Sbjct: 287 PPEQTPRKE 295
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 61/88 (69%), Gaps = 17/88 (19%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
KI EFK E NP +YLKE WP VK AL HF+KAELD+IEGSMT
Sbjct: 59 KIEEFKPEHNPGGMLEESSFACLFPQYREKYLKEVWPEVKRALGQHFVKAELDLIEGSMT 118
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVP 78
V TT+KT+DPYIIIKARDMIKLL+RSVP
Sbjct: 119 VRTTKKTFDPYIIIKARDMIKLLARSVP 146
>gi|326476732|gb|EGE00742.1| rRNA assembly protein Mis3 [Trichophyton tonsurans CBS 112818]
Length = 348
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPLV ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REIYLREVWPLVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 108 PAPQALKILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRRIVED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKEVRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP K +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|156045189|ref|XP_001589150.1| 90S preribosome/SSU processome component KRR1 [Sclerotinia
sclerotiorum 1980 UF-70]
gi|154694178|gb|EDN93916.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 349
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/253 (53%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK WPL+ +LE I A LD+ EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKTVWPLIMKSLEKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CD+IKI NLV+NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAIKILEDGVACDVIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RRI+ED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEIRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP FK + LSKR++P+ K K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLSKRRVPRNVTDKAKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLK WPL+ +LE I A LD+ EGSMTV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLKTVWPLIMKSLEKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSVP 108
>gi|149247984|ref|XP_001528379.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448333|gb|EDK42721.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 363
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 170/246 (69%), Gaps = 40/246 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V AL+ H I+ ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSV
Sbjct: 49 REQYLRNIWSYVTKALDKHHIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV+VLQDDI+CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKVLQDDIACDVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-KRKMPKKRKTKSEYT 321
MKNIHPIY IK LMIK+EL+K+P+L NE+W RFLP+FK + ++ K+K KK K YT
Sbjct: 190 CMKNIHPIYYIKELMIKQELSKNPELANEDWSRFLPSFKKRNVARKKKTSKKDGEKKVYT 249
Query: 322 PFPPPQ 327
PFPP Q
Sbjct: 250 PFPPAQ 255
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+YL+ W V AL+ H I+ ELD++EGSMTV TT KT+DP +IIKARD+IKLL+RSVP+
Sbjct: 51 QYLRNIWSYVTKALDKHHIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPF 110
>gi|327298894|ref|XP_003234140.1| 90S preribosome/SSU processome component KRR1 [Trichophyton rubrum
CBS 118892]
gi|326463034|gb|EGD88487.1| rRNA assembly protein Mis3 [Trichophyton rubrum CBS 118892]
Length = 347
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPLV ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REIYLREVWPLVTKALEKSCITCTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 108 PAPQALKILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRRIVED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKEVRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP K +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|443897833|dbj|GAC75172.1| rRNA processing protein [Pseudozyma antarctica T-34]
Length = 461
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 170/250 (68%), Gaps = 44/250 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W V +AL+ H I LD++EGSMTV TTRK +DPYII+KARDMI+LLSRSV
Sbjct: 147 RERYLKEVWGHVTSALDKHGIACTLDLVEGSMTVKTTRKAYDPYIILKARDMIRLLSRSV 206
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+D I CD+IKIGNL++NK+RFVKRRQR+IGPNG TLK+IELLT CY+LVQG
Sbjct: 207 PFPQAVKILEDGIECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQG 266
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G P K L +VRRIV D
Sbjct: 267 NTVSAMG---------------------------------------PFKSLKEVRRIVID 287
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMP----KKRKTKS 318
+KN+HPIY+IK LMIKRELAKDPKL ENWERFLP FK + + +K KK K K
Sbjct: 288 CLKNVHPIYHIKELMIKRELAKDPKLAEENWERFLPKFKKRNVKPKKSAEGEQKKEKIKP 347
Query: 319 E-YTPFPPPQ 327
+ YTPFPPPQ
Sbjct: 348 KTYTPFPPPQ 357
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P++++ YLKE W V +AL+ H I LD++EGSMTV TTRK +DPY
Sbjct: 136 ESSFATLFPKYRER-----YLKEVWGHVTSALDKHGIACTLDLVEGSMTVKTTRKAYDPY 190
Query: 62 IIIKARDMIKLLSRSVPY 79
II+KARDMI+LLSRSVP+
Sbjct: 191 IILKARDMIRLLSRSVPF 208
>gi|255938969|ref|XP_002560254.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584876|emb|CAP82913.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 372
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP++ ALE I LD++EGSMTV TTRKT+DP IIKARD+IKLL+RSV
Sbjct: 48 REQYLKEAWPVITRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CD+IKI N V+NK+RFVKRRQR++GPNG TLK++ELLT+ Y+LVQG
Sbjct: 108 PVTQAMKILEDGVACDVIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GP K GL +VRRI++D
Sbjct: 168 NTVAVMGPFK---------------------------------------GLKEVRRIIDD 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L E+W+RFLPNFK +TLSKR +P K KTK Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRHVPFKVTDKTKKTY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|315052040|ref|XP_003175394.1| 90S preribosome/SSU processome component KRR1 [Arthroderma gypseum
CBS 118893]
gi|311340709|gb|EFQ99911.1| ribosomal RNA assembly protein KRR1 [Arthroderma gypseum CBS
118893]
Length = 327
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPLV ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REIYLREVWPLVTKALEKSGIACTLDLVEGSMTVKTTRKTFDPASILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT+ Y+LVQG
Sbjct: 108 PAPQALKILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTSTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRR+VED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP K +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|164660108|ref|XP_001731177.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
gi|159105077|gb|EDP43963.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
Length = 363
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/251 (55%), Positives = 176/251 (70%), Gaps = 40/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V ALE H + LD++EGSM+V TTRKT+DPYII++ARD+IKLLSRSV
Sbjct: 59 REKYLREVWGHVTTALEKHGVACTLDLVEGSMSVRTTRKTFDPYIILRARDLIKLLSRSV 118
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN+V+NK+RFVKRRQR+IGPNG TLK+IELLT CY+LVQG
Sbjct: 119 PFTQAVKILQDDMACDVIKIGNIVRNKERFVKRRQRIIGPNGNTLKAIELLTGCYVLVQG 178
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G +K GL +VRRI+ D
Sbjct: 179 NTVSAMGSYK---------------------------------------GLKEVRRIILD 199
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY+IK LMIKRELAKDPKL NE+W+RFLP FK + + +K + K K YTP
Sbjct: 200 CMKNIHPIYHIKELMIKRELAKDPKLANESWDRFLPKFKKQNVKSKKPAEPPKKKI-YTP 258
Query: 323 FPPPQPESEAN 333
FPPPQ S+ +
Sbjct: 259 FPPPQQPSKLD 269
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 17/89 (19%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
KI F +EDNPH +YL+E W V ALE H + LD++EGSM+
Sbjct: 32 KIERFTQEDNPHHFLEESSFATLFPKYREKYLREVWGHVTTALEKHGVACTLDLVEGSMS 91
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
V TTRKT+DPYII++ARD+IKLLSRSVP+
Sbjct: 92 VRTTRKTFDPYIILRARDLIKLLSRSVPF 120
>gi|384253358|gb|EIE26833.1| hypothetical protein COCSUDRAFT_21918 [Coccomyxa subellipsoidea
C-169]
Length = 392
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 140/245 (57%), Positives = 171/245 (69%), Gaps = 41/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WP AL+ I EL+++EGSMTV TTRKTWDPYII+KARD++KLL+RSV
Sbjct: 68 RERYLREIWPAATKALKEVGIGCELNLVEGSMTVRTTRKTWDPYIIMKARDLLKLLARSV 127
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PY QAV+VL DD+ CDIIKIG LV+NK++FVKRRQRL+GPNG TLK++ELLTNCY+LVQG
Sbjct: 128 PYPQAVKVLNDDMQCDIIKIGGLVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQG 187
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP +GL QVRR+VED
Sbjct: 188 NTVSAMGP---------------------------------------FQGLKQVRRVVED 208
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
+KN+HPIY+IK LMIKRELAKDP LK ENWERFLP FK K + ++K + K +YTP
Sbjct: 209 CIKNVHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKKPVVTK--KKDYTP 266
Query: 323 FPPPQ 327
FPPPQ
Sbjct: 267 FPPPQ 271
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 19/94 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
N W ++ +F KEDNP+ YL+E WP AL+ I EL+++
Sbjct: 38 NHW--EVSKFSKEDNPYGLLEESSFAILFPKYRERYLREIWPAATKALKEVGIGCELNLV 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
EGSMTV TTRKTWDPYII+KARD++KLL+RSVPY
Sbjct: 96 EGSMTVRTTRKTWDPYIIMKARDLLKLLARSVPY 129
>gi|380492294|emb|CCF34707.1| ribosomal RNA assembly protein KRR1 [Colletotrichum higginsianum]
Length = 323
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 140/262 (53%), Positives = 177/262 (67%), Gaps = 41/262 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S ++ + +E YLKE WPLV ALE I LD+IEGSMTV TTRKT+DP I+ ARD
Sbjct: 39 SFAIVFPKYREVYLKEAWPLVTKALEKTGIACSLDLIEGSMTVKTTRKTYDPAAILNARD 98
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP QA+++L+D ++CD+IKI NLV+NK+R+VKRRQR++GPNG TLK++ELL
Sbjct: 99 LIKLLARSVPAPQALKILEDGVACDVIKIRNLVRNKERYVKRRQRILGPNGSTLKALELL 158
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+LVQG TV+ +GP K GL
Sbjct: 159 TQTYILVQGSTVSVMGPFK---------------------------------------GL 179
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
+VRR+VED M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLS R++P K
Sbjct: 180 KEVRRVVEDCMANIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSSRRVPLK 239
Query: 314 --RKTKSEYTPFPPPQPESEAN 333
KTK YTPFPP +S+ +
Sbjct: 240 VTDKTKKVYTPFPPAPEKSKVD 261
>gi|367033049|ref|XP_003665807.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
gi|347013079|gb|AEO60562.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
Length = 320
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WPLV ALE H I A LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 47 RERYLKDAWPLVTKALEKHGIAATLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSV 106
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI NLV+NK+RFVKRRQR++G NG TLK++ELLT Y+LV G
Sbjct: 107 PAPQAIKILEDGMACDIIKIRNLVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHG 166
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRR+VED
Sbjct: 167 NTVSVMGPYK---------------------------------------GLKEVRRVVED 187
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM+NIHPIY IK LMIKRELAKDP L +E+W R+LPNFK +TLSKR+ P K K+K Y
Sbjct: 188 TMRNIHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRKPYKITDKSKKPY 247
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 248 TPFPPAPEKSKVD 260
>gi|301119295|ref|XP_002907375.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
gi|262105887|gb|EEY63939.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
Length = 395
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 171/243 (70%), Gaps = 40/243 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP+V AL+ H I EL+++EGSMTV TTRKT DPYI++KARD+IKLL+RS+
Sbjct: 76 REKYLREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTTDPYIVLKARDLIKLLARSI 135
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L DD+ CDIIKIG LV+NK+RFVKRRQRL+GP+G TLK+IELLTNCY+LVQG
Sbjct: 136 PVNQAVKILDDDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQG 195
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G + GL +R+IVED
Sbjct: 196 NTVSAMG---------------------------------------SYHGLRNLRKIVED 216
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
N+HPIYN+K LMIKRELAKDPKLK+ENWERFLP FK + + + K PKK + K +YTP
Sbjct: 217 CFANVHPIYNVKRLMIKRELAKDPKLKDENWERFLPTFKKQNV-QTKKPKKVREKKDYTP 275
Query: 323 FPP 325
FPP
Sbjct: 276 FPP 278
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E WP+V AL+ H I EL+++EGSMTV TTRKT DPY
Sbjct: 65 ESSFATLFPKYREK-----YLREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTTDPY 119
Query: 62 IIIKARDMIKLLSRSVP 78
I++KARD+IKLL+RS+P
Sbjct: 120 IVLKARDLIKLLARSIP 136
>gi|302668490|ref|XP_003025816.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
gi|291189945|gb|EFE45205.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
Length = 348
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPLV ALE I LD++EG+MTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REIYLREVWPLVTKALEKSGIACTLDLVEGNMTVKTTRKTFDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 108 PAPQALKILEDDVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRRIVED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKEVRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP K +TLSKR+ P K K+K Y
Sbjct: 189 CMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|302895245|ref|XP_003046503.1| 90S preribosome/SSU processome component KRR1 [Nectria haematococca
mpVI 77-13-4]
gi|256727430|gb|EEU40790.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 321
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPLV ALE I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLVTKALEKTGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L D ++CDIIKI +LV+NK+RFVKRRQR++GPNG TLK++ELLT Y+LV G
Sbjct: 108 PAPQAIKILDDGVACDIIKIRSLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEMRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLS+R++P K KTK Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSRRRVPLKVTDKTKKTY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 45/58 (77%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLKE WPLV ALE I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLKEAWPLVTKALEKTGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVP 108
>gi|429849292|gb|ELA24695.1| rRNA assembly protein [Colletotrichum gloeosporioides Nara gc5]
Length = 323
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/262 (52%), Positives = 178/262 (67%), Gaps = 41/262 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S ++ + +E YLKE WPLV +LE H I LD+IEGSMTV TTRKT+DP I+ ARD
Sbjct: 39 SFAIVFPKYREVYLKEAWPLVTKSLEKHGIACSLDLIEGSMTVKTTRKTFDPAAILNARD 98
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP QA+++L D ++CD+IKI +LV+NK+R+VKRRQR++GPNG TLK++ELL
Sbjct: 99 LIKLLARSVPAPQAIKILDDGVACDVIKIRSLVRNKERYVKRRQRILGPNGSTLKALELL 158
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+LVQG TV+ +GP+K GL
Sbjct: 159 TQTYILVQGSTVSVMGPYK---------------------------------------GL 179
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
+VRR+VED M NIHPIY+IK LMIKRELAKDP+L +E+W+RFLPNFK KTLSKR++P K
Sbjct: 180 KEVRRVVEDCMNNIHPIYHIKELMIKRELAKDPELASESWDRFLPNFKKKTLSKRRVPLK 239
Query: 314 --RKTKSEYTPFPPPQPESEAN 333
K K YTPFPP +S+ +
Sbjct: 240 VTDKAKKTYTPFPPAPEKSKVD 261
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++++ P+++ YLKE WPLV +LE H I LD+IEGSMTV TTRKT+DP
Sbjct: 37 ESSFAIVFPKYR-----EVYLKEAWPLVTKSLEKHGIACSLDLIEGSMTVKTTRKTFDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|310792085|gb|EFQ27612.1| ribosomal RNA assembly protein KRR1 [Glomerella graminicola M1.001]
Length = 324
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 140/262 (53%), Positives = 178/262 (67%), Gaps = 41/262 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S ++ + +E YLKE WPLV ALE I LD+IEGSMTV TTRKT+DP I+ ARD
Sbjct: 39 SFAIVFPKYREVYLKEAWPLVTKALEKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARD 98
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP QA+++L+D ++CDIIKI NLV+NK+R+VKRRQR++GPNG TLK++ELL
Sbjct: 99 LIKLLARSVPAPQALKILEDGVACDIIKIRNLVRNKERYVKRRQRILGPNGSTLKALELL 158
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+LVQG TV+ +GP K GL
Sbjct: 159 TQTYILVQGSTVSVMGPFK---------------------------------------GL 179
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
+VRR+VED M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLS+R++P K
Sbjct: 180 KEVRRVVEDCMANIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSQRRVPLK 239
Query: 314 --RKTKSEYTPFPPPQPESEAN 333
K+K YTPFPP +S+ +
Sbjct: 240 VTDKSKKVYTPFPPAPEKSKVD 261
>gi|443689552|gb|ELT91925.1| hypothetical protein CAPTEDRAFT_183647 [Capitella teleta]
Length = 330
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+KECWPLV+ L+ IKA+LDV+EGSM+V TTR+TWDPYIII+ARD+IKLLSRSV
Sbjct: 15 QEKYIKECWPLVQEKLKSFNIKADLDVVEGSMSVKTTRQTWDPYIIIRARDLIKLLSRSV 74
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PY++AVRVL DD++C+II I N+V K+R+VKRRQRLIGPNG TLK+IELLT+CY+ VQG
Sbjct: 75 PYDKAVRVLDDDVACEIISIKNMVSPKERYVKRRQRLIGPNGSTLKAIELLTSCYVTVQG 134
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G + GL VR IV D
Sbjct: 135 STVAAIG---------------------------------------KYSGLKFVRSIVTD 155
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK--RKMPKKRKTKSEY 320
MKN+HPIYNIK MIK EL KDP+L ++WERFLP FK + +S + K++ K EY
Sbjct: 156 CMKNVHPIYNIKCAMIKNELEKDPELNKDSWERFLPKFKKQNVSNKKKAKKKEKSKKKEY 215
Query: 321 TPFPPPQPESEAN 333
TPFPPP PES+ +
Sbjct: 216 TPFPPPMPESKVD 228
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 65/79 (82%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ Y+KECWPLV+ L+ IKA+LDV+EGSM+V TTR+TWDPY
Sbjct: 4 ESSFATLFPKYQEK-----YIKECWPLVQEKLKSFNIKADLDVVEGSMSVKTTRQTWDPY 58
Query: 62 IIIKARDMIKLLSRSVPYE 80
III+ARD+IKLLSRSVPY+
Sbjct: 59 IIIRARDLIKLLSRSVPYD 77
>gi|378727857|gb|EHY54316.1| ribosomal RNA assembly protein KRR1 [Exophiala dermatitidis
NIH/UT8656]
Length = 337
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WPLV ALE I LD++EG M V TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 RELYLKQAWPLVTKALEKKGIACTLDLVEGRMEVRTTRKTYDPAAILDARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++LQDD++CD+IKI NLV+NK+RFVKRRQRL+GPNG TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILQDDMACDVIKIRNLVRNKERFVKRRQRLLGPNGSTLKALELLTNTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VRR+VED
Sbjct: 168 NTVSTMGGYK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
M NIHPIY++K LMIKRELAKDP LKNE+W+RFLP+FK KTLSKR P K KS Y
Sbjct: 189 CMNNIHPIYHVKELMIKRELAKDPALKNESWDRFLPHFKKKTLSKRHKPFKVTDKSSKPY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPP+ +S+ +
Sbjct: 249 TPFPPPREKSKID 261
>gi|425781142|gb|EKV19124.1| RRNA assembly protein Mis3, putative [Penicillium digitatum PHI26]
gi|425783173|gb|EKV21033.1| RRNA assembly protein Mis3, putative [Penicillium digitatum Pd1]
Length = 376
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP+V ALE I LD++EGSMTV TTRKT+DP IIK+RD+IKLL+RSV
Sbjct: 48 REQYLKEAWPVVTRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKSRDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CD+IKI N V+NK+RFVKRRQR++GPNG TLK++ELLT+ Y+LVQG
Sbjct: 108 PVTQAMKILEDGVACDVIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GP K GL +VRRI++D
Sbjct: 168 NTVAVMGPFK---------------------------------------GLKEVRRIIDD 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L E+W+RFLPNFK +TLSKR++P K K K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRRVPFKVTDKEKKTY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|169774963|ref|XP_001821949.1| 90S preribosome/SSU processome component KRR1 [Aspergillus oryzae
RIB40]
gi|83769812|dbj|BAE59947.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPLV ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLVTRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI + V+NK+RFVKRRQR++GPNG TLK++ELLT Y+LVQG
Sbjct: 108 PVQQALKILEDGVACDIIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+KG L +VR++V D
Sbjct: 168 NTVSAMGPYKG---------------------------------------LKEVRKVVND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|238496401|ref|XP_002379436.1| 90S preribosome/SSU processome component KRR1 [Aspergillus flavus
NRRL3357]
gi|220694316|gb|EED50660.1| rRNA assembly protein Mis3, putative [Aspergillus flavus NRRL3357]
gi|391868875|gb|EIT78084.1| rRNA processing protein [Aspergillus oryzae 3.042]
Length = 361
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPLV ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLVTRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++L+D ++CDIIKI + V+NK+RFVKRRQR++GPNG TLK++ELLT Y+LVQG
Sbjct: 108 PVQQALKILEDGVACDIIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+KG L +VR++V D
Sbjct: 168 NTVSAMGPYKG---------------------------------------LKEVRKVVND 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP L NE+W+RFLPNFK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|398397527|ref|XP_003852221.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
gi|339472102|gb|EGP87197.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
Length = 887
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 176/262 (67%), Gaps = 41/262 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S + +E YLK WP++ LE + I LD++EGSMTV TTRKT+DP I+ ARD
Sbjct: 586 SFSTLFPKYREAYLKASWPMITRQLEKYGIACTLDLVEGSMTVKTTRKTYDPASILNARD 645
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP QAV++L+D ++CD+IKI +V+NK+RFVKRRQR++GPNG TLK++ELL
Sbjct: 646 LIKLLARSVPAPQAVKILEDGMACDVIKIRGMVRNKERFVKRRQRILGPNGSTLKALELL 705
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+LVQG TV+ +G +K L
Sbjct: 706 TQTYILVQGNTVSVMG---------------------------------------GYKSL 726
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK- 312
+VRR+VED M NIHPIY++K LMIKRELAKDP+LKNENW+RFLP+FK + LSKR++P+
Sbjct: 727 KEVRRVVEDCMDNIHPIYHVKELMIKRELAKDPELKNENWDRFLPHFKKRNLSKRRVPRN 786
Query: 313 -KRKTKSEYTPFPPPQPESEAN 333
K+K YTPFPPPQ +S+ +
Sbjct: 787 VSDKSKKVYTPFPPPQEKSKVD 808
>gi|295667095|ref|XP_002794097.1| 90S preribosome/SSU processome component KRR1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226286203|gb|EEH41769.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 356
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 176/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W +V ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REAYLKETWLMVTRALEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLTN Y+LVQG
Sbjct: 108 PAPQALKILEDGVACDIIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK +MIK+ELAKDPKL NE+W+RFLP+FK +TLSKR+ P K K+K Y
Sbjct: 189 CMANIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
>gi|367053715|ref|XP_003657236.1| 90S preribosome/SSU processome component KRR1 [Thielavia terrestris
NRRL 8126]
gi|347004501|gb|AEO70900.1| hypothetical protein THITE_2122753 [Thielavia terrestris NRRL 8126]
Length = 321
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WPLV AL+ H IKA LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 47 RERYLKDAWPLVTKALDKHGIKATLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 106
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI N+V+NK+RFVKRRQR++G NG TLK++ELLT Y+LV G
Sbjct: 107 PAPQAIKILEDGMACDIIKIRNMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHG 166
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRR+VED
Sbjct: 167 NTVSVMGPYK---------------------------------------GLKEVRRVVED 187
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM+NIHPIY IK LMIKRELAKDP L +E+W R+LPNFK +TLSKR+ P K K+K Y
Sbjct: 188 TMQNIHPIYLIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRKPFKVTDKSKKPY 247
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 248 TPFPPAPEKSKVD 260
>gi|50285113|ref|XP_444985.1| 90S preribosome/SSU processome component KRR1 [Candida glabrata CBS
138]
gi|49524288|emb|CAG57885.1| unnamed protein product [Candida glabrata]
Length = 337
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 167/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 REAYLKSIWNDVTRALDKHHIGCTLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNTVANKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+V D
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKEIRRVVLD 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++++K K + K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPSKVKAEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 54/91 (59%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKPEDNKSGQPFAEESSFMTLFPKYREAYLKSIWNDVTRALDKHHIGCTLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTFDPAIILKARDLIKLLARSVPF 110
>gi|440639323|gb|ELR09242.1| hypothetical protein GMDG_03815 [Geomyces destructans 20631-21]
Length = 386
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 175/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPLV +LE I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLREAWPLVTRSLEKFGIACTLDLVEGSMTVKTTRKTYDPASILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L+D ++ DIIKI NLV+NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAVKILEDGVASDIIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RRI+ED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKELRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP+FK + LSKR++P K K+K
Sbjct: 189 CMSNIHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRVPLKVTDKSKKVR 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
>gi|401406702|ref|XP_003882800.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
gi|325117216|emb|CBZ52768.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
Length = 394
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/250 (54%), Positives = 169/250 (67%), Gaps = 41/250 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP VK AL HF+KAELD++EGSMTV TT+KT+DPYIIIKARDMIKLL+RSV
Sbjct: 86 REKYLKEVWPEVKRALGQHFVKAELDLVEGSMTVRTTKKTYDPYIIIKARDMIKLLARSV 145
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA ++L D + CDIIKIG +V+NK++FVKRRQRL+GPNG TLK+IELLT CY+LVQG
Sbjct: 146 PIAQARKILDDGMFCDIIKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQG 205
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV+ +G H KG+ V+R+VED
Sbjct: 206 QTVSVMGTH---------------------------------------KGIKVVQRLVED 226
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK--RKMPKKRKTKSEY 320
MKNIHP+Y+IK LMIKREL KDP L ENWERFLP FK + + + R+ K+K KS +
Sbjct: 227 CMKNIHPVYHIKELMIKRELEKDPALVAENWERFLPQFKKRNVQRKARRAEVKKKNKSLF 286
Query: 321 TPFPPPQPES 330
P P+ E
Sbjct: 287 PPEQTPRKED 296
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 61/88 (69%), Gaps = 17/88 (19%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
KI EFK E NP +YLKE WP VK AL HF+KAELD++EGSMT
Sbjct: 59 KIEEFKPEHNPGGMLEESSFACLFPQYREKYLKEVWPEVKRALGQHFVKAELDLVEGSMT 118
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVP 78
V TT+KT+DPYIIIKARDMIKLL+RSVP
Sbjct: 119 VRTTKKTYDPYIIIKARDMIKLLARSVP 146
>gi|312080672|ref|XP_003142700.1| dribble-PA [Loa loa]
gi|307762133|gb|EFO21367.1| hypothetical protein LOAG_07118 [Loa loa]
Length = 382
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/260 (53%), Positives = 172/260 (66%), Gaps = 46/260 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S ++ + +E+Y++ECWPLV+ A E HF+K +LD++EG+M V TTRKTWDPYIIIKARD
Sbjct: 46 SFAILFPKYREKYIRECWPLVQKAFEEHFLKVDLDLLEGTMVVKTTRKTWDPYIIIKARD 105
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
++KL+SRSVPYEQA+RVLQDD + +IIKI ++V NK+RFVKRR RLIG G TLK+IELL
Sbjct: 106 VLKLISRSVPYEQAIRVLQDDTASEIIKISSMVANKERFVKRRARLIGNEGATLKAIELL 165
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY++VQG TVAA+GP+ +GL
Sbjct: 166 TKCYVMVQGSTVAAVGPY---------------------------------------EGL 186
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR----- 308
VR IVED M NIHPIYNIK LMIKREL KD LKNENW+RFLP FK K +
Sbjct: 187 KHVRVIVEDCMNNIHPIYNIKTLMIKRELMKDENLKNENWDRFLPKFKKKVQPSQLTNQA 246
Query: 309 --KMPKKRKTKSEYTPFPPP 326
K + K K+ YTPFPPP
Sbjct: 247 KKKKAARWKKKAGYTPFPPP 266
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y++ECWPLV+ A E HF+K +LD++EG+M V
Sbjct: 29 ISTFSKEDNPNGLICESSFAILFPKYREKYIRECWPLVQKAFEEHFLKVDLDLLEGTMVV 88
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYIIIKARD++KL+SRSVPYE
Sbjct: 89 KTTRKTWDPYIIIKARDVLKLISRSVPYE 117
>gi|213402313|ref|XP_002171929.1| 90S preribosome/SSU processome component KRR1 [Schizosaccharomyces
japonicus yFS275]
gi|211999976|gb|EEB05636.1| ribosomal RNA assembly protein mis3 [Schizosaccharomyces japonicus
yFS275]
Length = 334
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/251 (53%), Positives = 172/251 (68%), Gaps = 40/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V AL+ + I LD++EGSMTV TTRK +DPY I+KARD+IKLL+RSV
Sbjct: 62 REKYLREVWPHVTRALDKYGIACVLDLVEGSMTVKTTRKAYDPYSILKARDLIKLLARSV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA++V+QDD++CD+IKIGNLV+NK RF+KRRQRLIG NG TLK++ELLT CY+LVQG
Sbjct: 122 PFPQAIKVMQDDVACDVIKIGNLVRNKDRFIKRRQRLIGNNGQTLKALELLTQCYILVQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G K GL +VRR+V D
Sbjct: 182 TTVAAMGGFK---------------------------------------GLKEVRRVVID 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHPIY+IK LMIKRELAKDP L E+W+RFLP FK + +++RK P K + K +YTP
Sbjct: 203 CMNNIHPIYHIKELMIKRELAKDPALATESWDRFLPQFKKRNVARRK-PAKVREKKDYTP 261
Query: 323 FPPPQPESEAN 333
FPP Q S+ +
Sbjct: 262 FPPAQQPSKID 272
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E WP V AL+ + I LD++EGSMTV TTRK +DPY
Sbjct: 51 ESSFATLFPKYR-----EKYLREVWPHVTRALDKYGIACVLDLVEGSMTVKTTRKAYDPY 105
Query: 62 IIIKARDMIKLLSRSVPY 79
I+KARD+IKLL+RSVP+
Sbjct: 106 SILKARDLIKLLARSVPF 123
>gi|154290221|ref|XP_001545709.1| 90S preribosome/SSU processome component KRR1 [Botryotinia
fuckeliana B05.10]
gi|347840709|emb|CCD55281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 349
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/253 (52%), Positives = 174/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK WPL+ +LE I A LD+ EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKTVWPLIMKSLEKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CD+IKI NLV+NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PAPQAIKILEDGVACDVIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RRI+ED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEIRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L E+W+RFLP FK + L+KR++P+ K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLNKRRVPRNVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ YLK WPL+ +LE I A LD+ EGSMTV TTRKT+DP
Sbjct: 37 ESSFATLFPKYR-----EVYLKTVWPLIMKSLEKFGIAATLDLREGSMTVKTTRKTYDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|168031539|ref|XP_001768278.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680456|gb|EDQ66892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 345
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 187/265 (70%), Gaps = 40/265 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M++ S + + +E+YL+E WP++ AL+ H IKA LD+++GSMTV TTRKT DPYII
Sbjct: 60 MLEESSFATLFPAYREKYLRETWPVITQALKEHGIKAVLDLVKGSMTVSTTRKTRDPYII 119
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD++KLLSRSVP QA+++L+DD+ CDIIKIGNL++NK+RFVKRRQRL+GPNG TLK
Sbjct: 120 MKARDLMKLLSRSVPAPQALKILEDDMQCDIIKIGNLIRNKERFVKRRQRLLGPNGATLK 179
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++ELLT CY+LVQG TV+A+GP K
Sbjct: 180 ALELLTGCYVLVQGSTVSAMGPWK------------------------------------ 203
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
GL VRR+VED +KN+HPIY+IKALMIKRELAKDP+LK++NW+RFLP FK K + +
Sbjct: 204 ---GLKAVRRVVEDCIKNVHPIYHIKALMIKRELAKDPELKDQNWDRFLPKFKKKNVKAK 260
Query: 309 KMPKKRKTKSEYTPFPPPQPESEAN 333
K+ K K K +YTPFPPPQ S+ +
Sbjct: 261 KV-SKDKEKKDYTPFPPPQQPSKVD 284
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P ++++ YL+E WP++ AL+ H IKA LD+++GSMTV TTRKT DPY
Sbjct: 63 ESSFATLFPAYREK-----YLRETWPVITQALKEHGIKAVLDLVKGSMTVSTTRKTRDPY 117
Query: 62 IIIKARDMIKLLSRSVP 78
II+KARD++KLLSRSVP
Sbjct: 118 IIMKARDLMKLLSRSVP 134
>gi|6319791|ref|NP_009872.1| Krr1p [Saccharomyces cerevisiae S288c]
gi|140400|sp|P25586.1|KRR1_YEAST RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548400|sp|B3LU25.1|KRR1_YEAS1 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548401|sp|B5VEQ2.1|KRR1_YEAS6 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548402|sp|C8Z430.1|KRR1_YEAS8 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548403|sp|E7LRT8.1|KRR1_YEASV RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548404|sp|E7QBZ1.1|KRR1_YEASZ RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|5300|emb|CAA42386.1| KRR1 [Saccharomyces cerevisiae]
gi|51013297|gb|AAT92942.1| YCL059C [Saccharomyces cerevisiae]
gi|151943775|gb|EDN62075.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406389|gb|EDV09656.1| ribosomal RNA assembly protein mis3 [Saccharomyces cerevisiae
RM11-1a]
gi|207347410|gb|EDZ73592.1| YCL059Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259144881|emb|CAY78146.1| Krr1p [Saccharomyces cerevisiae EC1118]
gi|285810642|tpg|DAA07426.1| TPA: Krr1p [Saccharomyces cerevisiae S288c]
gi|323338580|gb|EGA79798.1| Krr1p [Saccharomyces cerevisiae Vin13]
gi|323356023|gb|EGA87829.1| Krr1p [Saccharomyces cerevisiae VL3]
gi|365766811|gb|EHN08304.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 316
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 169/247 (68%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT--KSEY 320
MKNIHPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++ RK PKK + K Y
Sbjct: 190 CMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVA-RKKPKKIRNVEKKVY 248
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 249 TPFPPAQ 255
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|392300798|gb|EIW11888.1| Krr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 316
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 169/247 (68%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT--KSEY 320
MKNIHPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++ RK PKK + K Y
Sbjct: 190 CMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVA-RKKPKKIRNVEKKVY 248
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 249 TPFPPAQ 255
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|349576691|dbj|GAA21861.1| K7_Krr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 314
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 169/247 (68%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT--KSEY 320
MKNIHPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++ RK PKK + K Y
Sbjct: 190 CMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVA-RKKPKKIRNVEKKVY 248
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 249 TPFPPAQ 255
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|302795356|ref|XP_002979441.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
gi|300152689|gb|EFJ19330.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
Length = 373
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 178/265 (67%), Gaps = 42/265 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
+++ S S + +E+YL++ W V AL+ H IK EL+++EGSMTV TTRK DPYII
Sbjct: 56 LVEQSSFSTLFPQYREKYLQDVWHSVARALKEHGIKGELNLVEGSMTVTTTRKVQDPYII 115
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKARD+IKLL+RSVP QA+++L+D + CDIIKIGNL++NK RFVKRRQRL+GPNG TLK
Sbjct: 116 IKARDLIKLLARSVPAPQALKILEDYMQCDIIKIGNLIRNKDRFVKRRQRLLGPNGATLK 175
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++ELLT CY+LVQG TVAA+GP
Sbjct: 176 ALELLTGCYILVQGNTVAAMGP-------------------------------------- 197
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
+GL +RR+VED + NIHPIY+IKALMIKRELAKDP L NENWERFLP FK K + ++
Sbjct: 198 -FQGLKTLRRVVEDCIHNIHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNVQRK 256
Query: 309 KMPKKRKTKSEYTPFPPPQPESEAN 333
K +K K YTPFPPPQ S+ +
Sbjct: 257 KS---KKEKKPYTPFPPPQQPSKID 278
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 58/77 (75%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
++++S P+++++ YL++ W V AL+ H IK EL+++EGSMTV TTRK DPY
Sbjct: 59 QSSFSTLFPQYREK-----YLQDVWHSVARALKEHGIKGELNLVEGSMTVTTTRKVQDPY 113
Query: 62 IIIKARDMIKLLSRSVP 78
IIIKARD+IKLL+RSVP
Sbjct: 114 IIIKARDLIKLLARSVP 130
>gi|256270959|gb|EEU06085.1| Krr1p [Saccharomyces cerevisiae JAY291]
Length = 316
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 138/247 (55%), Positives = 169/247 (68%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP KGL ++ RR+VED
Sbjct: 169 NTVSAMGPFKGLKEA---------------------------------------RRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT--KSEY 320
MKNIHPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++ RK PKK + K Y
Sbjct: 190 CMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVA-RKKPKKIRNVEKKVY 248
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 249 TPFPPAQ 255
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|365761869|gb|EHN03495.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840079|gb|EJT43000.1| KRR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 316
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 169/247 (68%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 REGYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT--KSEY 320
MKNIHPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++ RK PKK + K Y
Sbjct: 190 CMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVA-RKKPKKIRNVEKKVY 248
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 249 TPFPPAQ 255
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKEEDNGSGQPFAEESSFMTLFPKYREGYLKTIWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|367012591|ref|XP_003680796.1| 90S preribosome/SSU processome component KRR1 [Torulaspora
delbrueckii]
gi|359748455|emb|CCE91585.1| hypothetical protein TDEL_0C06960 [Torulaspora delbrueckii]
Length = 350
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 131/245 (53%), Positives = 167/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL H I LD++EGSMTV TTRKT+DP II++ARD+IKLL+RSV
Sbjct: 49 REPYLKSIWNDVTRALNAHHIACVLDLMEGSMTVKTTRKTFDPAIILRARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L++D++CD+IKIGN+V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFAQAVKILEEDVACDVIKIGNVVANKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRR+VED
Sbjct: 169 NTVSVMGPYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TM+N+HPIY IK LMIKRELAK P+L E+W RFLP FK + ++++K K R K YTP
Sbjct: 190 TMRNVHPIYQIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVARKKPKKIRAEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 45/59 (76%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
YLK W V AL H I LD++EGSMTV TTRKT+DP II++ARD+IKLL+RSVP+
Sbjct: 52 YLKSIWNDVTRALNAHHIACVLDLMEGSMTVKTTRKTFDPAIILRARDLIKLLARSVPF 110
>gi|302413862|ref|XP_003004763.1| 90S preribosome/SSU processome component KRR1 [Verticillium
albo-atrum VaMs.102]
gi|261355832|gb|EEY18260.1| ribosomal RNA assembly protein KRR1 [Verticillium albo-atrum
VaMs.102]
Length = 319
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 140/262 (53%), Positives = 173/262 (66%), Gaps = 41/262 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S SV + +E YLKE WPLV +LE + I LD+IEGSMTV TTRKT+DP ++ ARD
Sbjct: 38 SFSVLFPKYREVYLKEAWPLVTKSLEKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARD 97
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP QAV++L+D ++CDIIKI NLV NK RFVKRRQRL+GPNG TLK++ELL
Sbjct: 98 LIKLLARSVPAPQAVKILEDGVACDIIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELL 157
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+LV G TV+A+GP+K GL
Sbjct: 158 TETYILVHGNTVSAMGPYK---------------------------------------GL 178
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
+VRRI TM NIHPIY IK LMIKRELAKDP+L NE+W+RFLP+F KTLS R++P K
Sbjct: 179 KEVRRIAIQTMDNIHPIYAIKQLMIKRELAKDPELANESWDRFLPDFGKKTLSHRRVPHK 238
Query: 314 --RKTKSEYTPFPPPQPESEAN 333
K+K YTPFPP +S+ +
Sbjct: 239 VSDKSKKVYTPFPPAPEKSKVD 260
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 57/77 (74%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S+ P++++ YLKE WPLV +LE + I LD+IEGSMTV TTRKT+DP
Sbjct: 36 ESSFSVLFPKYREV-----YLKEAWPLVTKSLEKYGIACSLDLIEGSMTVKTTRKTYDPA 90
Query: 62 IIIKARDMIKLLSRSVP 78
++ ARD+IKLL+RSVP
Sbjct: 91 AVLNARDLIKLLARSVP 107
>gi|322700928|gb|EFY92680.1| rRNA assembly protein Mis3, putative [Metarhizium acridum CQMa 102]
Length = 320
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 172/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ +LE H I LD+IEGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLITKSLEKHGIACTLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L+D ++CD+IKI NLV +K RFVKRRQR++GPNG TLK++ELLT Y+LV G
Sbjct: 108 PAPQAVKILEDGMACDVIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+G +K GL ++RRIVED
Sbjct: 168 NTVCAMGGYK---------------------------------------GLKELRRIVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLS+R++P K K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSRRRVPHKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEQSKVD 261
>gi|302792240|ref|XP_002977886.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
gi|300154589|gb|EFJ21224.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
Length = 347
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 178/265 (67%), Gaps = 42/265 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
+++ S S + +E+YL++ W V AL+ H IK EL+++EGSMTV TTRK DPYII
Sbjct: 56 LVEQSSFSTLFPQYREKYLQDVWHSVARALKEHGIKGELNLVEGSMTVSTTRKVQDPYII 115
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKARD+IKLL+RSVP QA+++L+D + CDIIKIGNL++NK RFVKRRQRL+GPNG TLK
Sbjct: 116 IKARDLIKLLARSVPAPQALKILEDYMQCDIIKIGNLIRNKDRFVKRRQRLLGPNGATLK 175
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++ELLT CY+LVQG TVAA+GP
Sbjct: 176 ALELLTGCYILVQGNTVAAMGP-------------------------------------- 197
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
+GL +RR+VED + NIHPIY+IKALMIKRELAKDP L NENWERFLP FK K + ++
Sbjct: 198 -FQGLKTLRRVVEDCIHNIHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNVQRK 256
Query: 309 KMPKKRKTKSEYTPFPPPQPESEAN 333
K +K K YTPFPPPQ S+ +
Sbjct: 257 KS---KKEKKPYTPFPPPQQPSKID 278
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 58/77 (75%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
++++S P+++++ YL++ W V AL+ H IK EL+++EGSMTV TTRK DPY
Sbjct: 59 QSSFSTLFPQYREK-----YLQDVWHSVARALKEHGIKGELNLVEGSMTVSTTRKVQDPY 113
Query: 62 IIIKARDMIKLLSRSVP 78
IIIKARD+IKLL+RSVP
Sbjct: 114 IIIKARDLIKLLARSVP 130
>gi|402083986|gb|EJT79004.1| ribosomal RNA assembly protein KRR1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 320
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 133/253 (52%), Positives = 171/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL++CWPLV ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLRQCWPLVTKALERHGIATTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDI+KI NLV NK+RFVKRRQR++GPNG TLK++ELLT+ Y+LV G
Sbjct: 108 PAPQAIKILEDGVACDIVKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTSTYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL +VRR+VED
Sbjct: 168 NTVSVMGPFK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY IK LM+KRELAKDP L NE+W+RFLPNFK ++LS R++P K K+K Y
Sbjct: 189 CMANIHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRVPHKVTDKSKKTY 248
Query: 321 TPFPPPQPESEAN 333
T FPP +S+ +
Sbjct: 249 TAFPPAPEKSKVD 261
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 47/58 (81%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YL++CWPLV ALE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLRQCWPLVTKALERHGIATTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVP 108
>gi|254584874|ref|XP_002498005.1| 90S preribosome/SSU processome component KRR1 [Zygosaccharomyces
rouxii CBS 732]
gi|186928977|emb|CAQ43302.1| Ribosomal RNA assembly protein KRR1 [Zygosaccharomyces rouxii]
gi|238940898|emb|CAR29072.1| ZYRO0F18458p [Zygosaccharomyces rouxii]
Length = 314
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 167/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL + + LD++EGSMTV TTRKT DP II+KARD+IKLL+RSV
Sbjct: 49 REAYLKSIWNDVTKALNKYHVACVLDLVEGSMTVKTTRKTCDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+D+ +CD+IKIGN V NK+RF KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILEDNTACDVIKIGNTVANKERFQKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G +K GL +VRR+VED
Sbjct: 169 NTVAAMGNYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TMKNIHPIY+IK LMIKRELAK P+L NE+W RFLPNFK + ++++K K RK K YTP
Sbjct: 190 TMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPNFKKRNVARKKPMKIRKEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 44/59 (74%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
YLK W V AL + + LD++EGSMTV TTRKT DP II+KARD+IKLL+RSVP+
Sbjct: 52 YLKSIWNDVTKALNKYHVACVLDLVEGSMTVKTTRKTCDPAIILKARDLIKLLARSVPF 110
>gi|401626633|gb|EJS44561.1| krr1p [Saccharomyces arboricola H-6]
Length = 316
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 169/247 (68%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 REGYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQR++GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRMVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT--KSEY 320
MKN+HPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++ RK PKK + K Y
Sbjct: 190 CMKNVHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVA-RKKPKKIRNVEKKVY 248
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 249 TPFPPAQ 255
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
+I EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 RIEEFKEEDNASGQPFAEESSFMTLFPKYREGYLKTIWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|322706650|gb|EFY98230.1| rRNA assembly protein Mis3, putative [Metarhizium anisopliae ARSEF
23]
Length = 320
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 170/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPLV +LE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLKEAWPLVTKSLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L+D ++CD+IKI NLV +K RFVKRRQR++GPNG TLK++ELLT Y+LV G
Sbjct: 108 PAPQAVKILEDGMACDVIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+G +K GL +RRI+ED
Sbjct: 168 NTVCAMGGYK---------------------------------------GLKDLRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+L NE+W+RFLPNFK KTLS R++P K KTK Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSHRRVPHKVTDKTKKAY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEQSKID 261
>gi|354546423|emb|CCE43153.1| hypothetical protein CPAR2_207960 [Candida parapsilosis]
Length = 363
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 169/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V AL+ H I+ ELD++EG+MTV TT KT+DP +I+KARD+IKLL+RSV
Sbjct: 49 REQYLRSIWSDVTKALDKHHIRCELDLVEGAMTVKTTTKTFDPAMILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDVACDVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRR+ ED
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKEVRRVAED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY IK LMIK+EL K+P+L +E+W RFLP+FK + ++++K+ + K YTP
Sbjct: 190 CMKNIHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVKTSKVEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 48/60 (80%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+YL+ W V AL+ H I+ ELD++EG+MTV TT KT+DP +I+KARD+IKLL+RSVP+
Sbjct: 51 QYLRSIWSDVTKALDKHHIRCELDLVEGAMTVKTTTKTFDPAMILKARDLIKLLARSVPF 110
>gi|402594910|gb|EJW88836.1| dribble protein [Wuchereria bancrofti]
Length = 315
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/230 (56%), Positives = 159/230 (69%), Gaps = 39/230 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S ++ + +E+Y++ECWPL++ E HF+KA+LDV+EG+M V TTRKTWDPYIIIKARD
Sbjct: 46 SFAILFPKYREKYIRECWPLLQKVFEEHFLKADLDVLEGTMVVKTTRKTWDPYIIIKARD 105
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
++KL+SRSVPYEQAVRVLQDD + +IIKI ++V NK+RFVKRR RLIG G TLK++ELL
Sbjct: 106 VLKLISRSVPYEQAVRVLQDDTASEIIKISSMVTNKERFVKRRARLIGNEGATLKAVELL 165
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY++VQG TVAA+GP ++GL
Sbjct: 166 TKCYIMVQGSTVAAVGP---------------------------------------YEGL 186
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSK 303
VR IVED M NIHPIYNIK LMIKREL KD LKNENW+RFLP FK K
Sbjct: 187 KHVRMIVEDCMNNIHPIYNIKTLMIKRELMKDENLKNENWDRFLPKFKKK 236
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y++ECWPL++ E HF+KA+LDV+EG+M V
Sbjct: 29 ISTFSKEDNPNGLVCESSFAILFPKYREKYIRECWPLLQKVFEEHFLKADLDVLEGTMVV 88
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYIIIKARD++KL+SRSVPYE
Sbjct: 89 KTTRKTWDPYIIIKARDVLKLISRSVPYE 117
>gi|195996143|ref|XP_002107940.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
gi|190588716|gb|EDV28738.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
Length = 348
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 175/247 (70%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WPLV+ L+ H IK +LDVIEGSMTV TTRKTWDPY+IIKARD+IKLL+RSV
Sbjct: 56 REKYLREAWPLVEEVLKQHNIKCKLDVIEGSMTVSTTRKTWDPYVIIKARDLIKLLARSV 115
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P EQA R+L+D ++C+IIKIG+LV+N+QRF+KRRQRLIGPNG TLK++ELLT CY+++QG
Sbjct: 116 PVEQAKRILEDGMACEIIKIGSLVRNRQRFIKRRQRLIGPNGATLKALELLTGCYLMIQG 175
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA LG +KGL Q+ ++++ D
Sbjct: 176 NTVACLGTYKGLKQA---------------------------------------KKVIID 196
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TM N+HPIYNIKA+MIKRELA +P + NE+W+RFLP FK + K+K+ + K EYTP
Sbjct: 197 TMNNVHPIYNIKAMMIKRELANNPDMANESWDRFLPKFKKVNIKKKKV---KIEKKEYTP 253
Query: 323 FPPPQPE 329
FPPPQ E
Sbjct: 254 FPPPQTE 260
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 62/93 (66%), Gaps = 17/93 (18%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
KI F ++DNP +YL+E WPLV+ L+ H IK +LDVIEGSMT
Sbjct: 29 KIDTFDEKDNPQGLLEESSFATLFPKYREKYLREAWPLVEEVLKQHNIKCKLDVIEGSMT 88
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
V TTRKTWDPY+IIKARD+IKLL+RSVP E K
Sbjct: 89 VSTTRKTWDPYVIIKARDLIKLLARSVPVEQAK 121
>gi|444314297|ref|XP_004177806.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
gi|387510845|emb|CCH58287.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
Length = 316
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 171/245 (69%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E W V +L+ + + LD+IEGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RETYLREVWGDVTKSLDKYHVACTLDLIEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PY QA+R+LQDDI+CD+IKIGN+V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PYPQAIRILQDDIACDVIKIGNVVNNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKREL+K P+L NE+W RFLP FK + ++++K K +K K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKRELSKRPELANEDWSRFLPMFKKRNVARKKSKKPKKEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 21/96 (21%)
Query: 3 NAWSMKIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELD 43
N W +I EFK EDN YL+E W V +L+ + + LD
Sbjct: 17 NKW--EIQEFKPEDNASGLPFTEESSFMTLFPKYRETYLREVWGDVTKSLDKYHVACTLD 74
Query: 44 VIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+IEGSMTV TTRKT+DP II+KARD+IKLL+RSVPY
Sbjct: 75 LIEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPY 110
>gi|340960838|gb|EGS22019.1| hypothetical protein CTHT_0039040 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 322
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 168/245 (68%), Gaps = 41/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+CWPLV ALE H I A LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 47 RERYLKDCWPLVTKALEKHGIAATLDIVEGSMTVKTTRKTYDPAAILKARDLIKLLARSV 106
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI ++V+NK+RFVKRRQRL+G NG TLK++ELLT Y+LV G
Sbjct: 107 PAPQALKILEDGMACDIIKIRSMVRNKERFVKRRQRLLGQNGTTLKALELLTQTYILVHG 166
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VRR+VED
Sbjct: 167 NTVSVMGGYK---------------------------------------GLKEVRRVVED 187
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM NIHPIY IK LMIKRELAKDP L +E+W R+LP FK +TLSKR+ P K K+K Y
Sbjct: 188 TMNNIHPIYLIKELMIKRELAKDPALAHEDWSRYLPQFKKRTLSKRRKPFKINDKSKKPY 247
Query: 321 TPFPP 325
TPFPP
Sbjct: 248 TPFPP 252
>gi|389628494|ref|XP_003711900.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|351644232|gb|EHA52093.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|440470939|gb|ELQ39978.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae Y34]
gi|440488292|gb|ELQ68023.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae P131]
Length = 320
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL++ WPLV ALE + I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLRQSWPLVTKALEKYGIATTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI NLV+NK+RF+KRRQR++GPNG TLK++ELLT+ Y+LV G
Sbjct: 108 PAPQAIKILEDGVACDIIKIRNLVRNKERFIKRRQRILGPNGSTLKALELLTSTYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M N+HPIY IK LM+KRELAKDP L NE+W+RFLPNFK ++LS R++P K K+K Y
Sbjct: 189 CMNNVHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRVPHKVNDKSKKTY 248
Query: 321 TPFPPPQPESEAN 333
T FPP +S+ +
Sbjct: 249 TAFPPAPEKSKVD 261
>gi|346319385|gb|EGX88987.1| rRNA assembly protein Mis3, putative [Cordyceps militaris CM01]
Length = 363
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/253 (53%), Positives = 168/253 (66%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ ALE I LD++EGSM V TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 90 REVYLKEAWPLITKALEKTGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSV 149
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D ++CD++KI NLV NK RFVKRRQR++GP G TLK++ELLT Y+LV G
Sbjct: 150 PAPQAVKILDDGVACDVVKIRNLVGNKVRFVKRRQRILGPEGSTLKALELLTETYILVHG 209
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRRI+ED
Sbjct: 210 NTVSVMGPYK---------------------------------------GLKEVRRIIED 230
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+LKNE+W+RFLPNF+ KTLSKR+ P KTK Y
Sbjct: 231 CMANIHPIYHIKELMIKRELAKDPELKNESWDRFLPNFRRKTLSKRRTPHAITDKTKKTY 290
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 291 TPFPPAPEKSKVD 303
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLKE WPL+ ALE I LD++EGSM V TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 93 YLKEAWPLITKALEKTGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVP 150
>gi|400593186|gb|EJP61181.1| rRNA assembly protein Mis3, putative [Beauveria bassiana ARSEF
2860]
Length = 320
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/253 (52%), Positives = 170/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WPL+ ALE + I LD++EGSM V TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REVYLREAWPLITKALEKNGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CD+IKI NLV NK RFVKRRQR++GP+G TLK++ELLT Y+LV G
Sbjct: 108 PAPQAIKILEDGVACDVIKIRNLVGNKDRFVKRRQRILGPDGSTLKALELLTETYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRR+VED
Sbjct: 168 NTVSVMGPYK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY IK LMIKRELAKDP+LKNE+W+RFLPNFK KTLS+R+ P KTK Y
Sbjct: 189 CMANIHPIYYIKELMIKRELAKDPELKNESWDRFLPNFKRKTLSRRRTPHNITDKTKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 45/58 (77%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YL+E WPL+ ALE + I LD++EGSM V TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLREAWPLITKALEKNGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVP 108
>gi|85106412|ref|XP_962180.1| 90S preribosome/SSU processome component KRR1 [Neurospora crassa
OR74A]
gi|28923778|gb|EAA32944.1| ribosomal RNA assembly protein mis3 [Neurospora crassa OR74A]
gi|336471628|gb|EGO59789.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2508]
gi|350292741|gb|EGZ73936.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2509]
Length = 320
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 171/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL++ WPL+ AL+ H I A LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 47 RERYLRDSWPLITKALDKHGITAVLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSV 106
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI ++V+NK+RFVKRRQR++G NG TLK++ELLT Y+LV G
Sbjct: 107 PAPQAIKILEDGMACDIIKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHG 166
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL +VRR+VED
Sbjct: 167 NTVSVMGPFK---------------------------------------GLKEVRRVVED 187
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK--KRKTKSEY 320
TM N+HPIY IK LMIKRELAKDP L +E+W R+LPNFK +TLSKR++P KTK Y
Sbjct: 188 TMNNVHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRVPHVVNDKTKKNY 247
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 248 TPFPPAPEKSKVD 260
>gi|299747151|ref|XP_001841248.2| 90S preribosome/SSU processome component KRR1 [Coprinopsis cinerea
okayama7#130]
gi|298407390|gb|EAU80543.2| ribosomal RNA assembly protein mis3 [Coprinopsis cinerea
okayama7#130]
Length = 392
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 135/270 (50%), Positives = 166/270 (61%), Gaps = 64/270 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V ALE+H + LD++ GSM+V TTRKT+DPYII+KARDMIKL++R V
Sbjct: 60 REKYLREVWSAVTKALEVHGVACTLDLVHGSMSVRTTRKTYDPYIILKARDMIKLMARGV 119
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++LQDD++CDIIKIGNLV+NK+RFVKRRQR+IGP+G TLK+IELLTNCY+LVQG
Sbjct: 120 ALNQAVKILQDDMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTNCYVLVQG 179
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G P K L +VRRIV D
Sbjct: 180 STVSVMG---------------------------------------PFKSLKEVRRIVLD 200
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR-------------- 308
MKNIHPIY IK LMI+RELAKDPKL E+W+RFLP F+ + L
Sbjct: 201 CMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKTAKKNEKLKEKE 260
Query: 309 -----------KMPKKRKTKSEYTPFPPPQ 327
+ K K K YTPFPPPQ
Sbjct: 261 EARKAAGLDPAEASKTEKKKKVYTPFPPPQ 290
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E W V ALE+H + LD++ GSM+V TTRKT+DPY
Sbjct: 49 ESSFATLFPKYR-----EKYLREVWSAVTKALEVHGVACTLDLVHGSMSVRTTRKTYDPY 103
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDMIKL++R V
Sbjct: 104 IILKARDMIKLMARGV 119
>gi|403339159|gb|EJY68829.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
gi|403343284|gb|EJY70967.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
Length = 383
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 177/256 (69%), Gaps = 41/256 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S +V + +E+Y+KE WPLVK AL I ELD+IEGSMTV TT++TWDPY IIKARD
Sbjct: 64 SFAVLFPQYREKYIKEVWPLVKKALSKFKIIGELDLIEGSMTVKTTKQTWDPYSIIKARD 123
Query: 134 MIKLLSRSVPYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIEL 192
+IKLL+RSVPY+QAV++L+DD + CDIIKIG LV+NK++FVKRRQRLIGPNG TLK++EL
Sbjct: 124 LIKLLARSVPYQQAVKILEDDNMFCDIIKIGGLVRNKEKFVKRRQRLIGPNGMTLKALEL 183
Query: 193 LTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKG 252
LTNCY+LVQG TV+++G + LKS
Sbjct: 184 LTNCYILVQGNTVSSMGYFR------------ELKS------------------------ 207
Query: 253 LLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK 312
VRRIV DTM+N HPIYNIK LMIKRELAK+P++ ENW+RFLP+FK + + +++
Sbjct: 208 ---VRRIVLDTMRNTHPIYNIKELMIKRELAKNPEMAGENWDRFLPHFKKQNVKRKQKKI 264
Query: 313 KRKTKSE-YTPFPPPQ 327
K K + YTPFPP Q
Sbjct: 265 DTKKKGDNYTPFPPEQ 280
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 17/90 (18%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K+ +FK EDNP +Y+KE WPLVK AL I ELD+IEGSMT
Sbjct: 46 KVDQFKPEDNPSGVLEESSFAVLFPQYREKYIKEVWPLVKKALSKFKIIGELDLIEGSMT 105
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT++TWDPY IIKARD+IKLL+RSVPY+
Sbjct: 106 VKTTKQTWDPYSIIKARDLIKLLARSVPYQ 135
>gi|71018315|ref|XP_759388.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
gi|46099113|gb|EAK84346.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
Length = 364
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 169/262 (64%), Gaps = 50/262 (19%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W V +ALE H I LD++EGSMTV TTRKT+DPYI++KARDMI+LLSRSV
Sbjct: 62 RERYLKEVWGHVTSALEKHGIACTLDLVEGSMTVKTTRKTYDPYIVLKARDMIRLLSRSV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+D I CD+IKIGNL++NK+RFVKRRQR+IGPNG TLK+IELLTNCY+LVQG
Sbjct: 122 PFPQAVKILEDGIECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A +G K L +VRRIV D
Sbjct: 182 NTVCA---------------------------------------MGQFKNLKEVRRIVID 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-----------SKRKMP 311
+KNIHPIY+IK LMIKRELAKDPKL ENWERFLP FK + RK
Sbjct: 203 CLKNIHPIYHIKELMIKRELAKDPKLAQENWERFLPKFKKQNQKKKPTTTDAEGEARKND 262
Query: 312 KKRKTKSEYTPFPPPQPESEAN 333
KK YTPFPPPQ S+ +
Sbjct: 263 KKVIKPKTYTPFPPPQQPSKID 284
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 59/78 (75%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P++++ YLKE W V +ALE H I LD++EGSMTV TTRKT+DPY
Sbjct: 51 ESSFATLFPKYRER-----YLKEVWGHVTSALEKHGIACTLDLVEGSMTVKTTRKTYDPY 105
Query: 62 IIIKARDMIKLLSRSVPY 79
I++KARDMI+LLSRSVP+
Sbjct: 106 IVLKARDMIRLLSRSVPF 123
>gi|146415907|ref|XP_001483923.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
gi|146391048|gb|EDK39206.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
Length = 340
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 170/245 (69%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V AL+ H I +LD++EGSMTV TTRKT+DP IIIKARD+IKLL+RSV
Sbjct: 49 REQYLRTIWSEVTKALDKHNIACQLDLVEGSMTVKTTRKTYDPAIIIKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV+VLQDD++CD+IKIGN V NK RFVKRRQRL+GPNG TLK++ELLTNCY+LVQG
Sbjct: 109 PFPQAVKVLQDDVACDVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTNCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRR+VED
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIK+EL+K P+L NE+W RFLP FK + ++++K K K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKQELSKKPELANEDWSRFLPMFKKRNVARKKKAAPDKKKV-YTP 248
Query: 323 FPPPQ 327
FPP Q
Sbjct: 249 FPPAQ 253
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 19/90 (21%)
Query: 9 IPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGSM 49
+ EFK EDN +YL+ W V AL+ H I +LD++EGSM
Sbjct: 21 VDEFKPEDNASGLPFAEESSFMTLFPKYREQYLRTIWSEVTKALDKHNIACQLDLVEGSM 80
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TV TTRKT+DP IIIKARD+IKLL+RSVP+
Sbjct: 81 TVKTTRKTYDPAIIIKARDLIKLLARSVPF 110
>gi|167533103|ref|XP_001748232.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773352|gb|EDQ86993.1| predicted protein [Monosiga brevicollis MX1]
Length = 1010
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 136/261 (52%), Positives = 171/261 (65%), Gaps = 43/261 (16%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+ S + +E+YL+E W + + L+ I ELD+IEGSMTV TTRKTWDPYII
Sbjct: 680 MVDETSFCTLFPKYREQYLREHWSRITSELKRLHIACELDLIEGSMTVRTTRKTWDPYII 739
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLL+RSVP+E A+++LQDD++CDIIKI LV+NK+RFVKRRQRLIGPNG TLK
Sbjct: 740 LKARDLIKLLARSVPFEHAIKILQDDVACDIIKINGLVRNKERFVKRRQRLIGPNGATLK 799
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IELLT CY+LVQG TVA +GP KGL Q+
Sbjct: 800 AIELLTECYILVQGNTVACMGPFKGLKQA------------------------------- 828
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
RR+V D M NIHP+YNIKA+MIKREL + LK +W+RFLP FK+ + ++
Sbjct: 829 --------RRVVLDCMNNIHPVYNIKAMMIKRELMANDALKEASWDRFLPKFKTSNIKRK 880
Query: 309 KMPKKRKTKSEYTPFPP-PQP 328
K + K EYTPFPP PQP
Sbjct: 881 KP---KFKKKEYTPFPPAPQP 898
>gi|444730114|gb|ELW70509.1| KRR1 small subunit processome component like protein [Tupaia
chinensis]
Length = 283
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 132/220 (60%), Positives = 163/220 (74%), Gaps = 39/220 (17%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
MTV TT+KT+DPYIII+ARD+IKLL+RSV +EQAVR+LQDDI+CDIIKIG+LV+NK+RFV
Sbjct: 1 MTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERFV 60
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRRQRLIG P G TLK++ELLT
Sbjct: 61 KRRQRLIG---------------------------------------PKGSTLKALELLT 81
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENW 293
NCY++VQG TV+A+GP GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++W
Sbjct: 82 NCYIMVQGNTVSAIGPFNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSW 141
Query: 294 ERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
ERFLP+FK K ++KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 142 ERFLPHFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQID 181
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
MTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 1 MTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 32
>gi|342883805|gb|EGU84227.1| hypothetical protein FOXB_05184 [Fusarium oxysporum Fo5176]
Length = 320
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/262 (50%), Positives = 175/262 (66%), Gaps = 41/262 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S+ + +E YLKE WPLV ALE H I LD++EGSM V TTRKT+DP I+ ARD
Sbjct: 39 SFSLLFPKYREVYLKEAWPLVTRALEKHGIACTLDLVEGSMAVKTTRKTYDPAAILNARD 98
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP QA+++L+D ++CD+IKI L +K+ FVKRRQR++GPNG TLK++ELL
Sbjct: 99 LIKLLARSVPAPQAIKILEDGVACDVIKIRGLCGSKESFVKRRQRILGPNGSTLKALELL 158
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+LV G TV+A+GP+ KGL
Sbjct: 159 TETYILVHGNTVSAMGPY---------------------------------------KGL 179
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
++RR+VED M+N+HPIY+IK +MIKRELAKDP+L NE+W+RFLPNFK ++LS R++P K
Sbjct: 180 KELRRVVEDCMQNVHPIYHIKEMMIKRELAKDPELANESWDRFLPNFKKRSLSHRRVPHK 239
Query: 314 --RKTKSEYTPFPPPQPESEAN 333
KTK YTPFPP +S+ +
Sbjct: 240 VTDKTKKTYTPFPPAPEKSKVD 261
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S+ P++++ YLKE WPLV ALE H I LD++EGSM V TTRKT+DP
Sbjct: 37 ESSFSLLFPKYREV-----YLKEAWPLVTRALEKHGIACTLDLVEGSMAVKTTRKTYDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|255715898|ref|XP_002554230.1| 90S preribosome/SSU processome component KRR1 [Lachancea
thermotolerans CBS 6340]
gi|238935613|emb|CAR23793.1| KLTH0F00506p [Lachancea thermotolerans CBS 6340]
Length = 332
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 165/247 (66%), Gaps = 42/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTR+T+DP II+KARD+IKLL+RSV
Sbjct: 49 REAYLKSVWNDVTRALDKHNIACVLDLVEGSMTVKTTRRTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD +CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDTACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
M+NIHPIY+IK LMIKRELAK P L E+W RFLP FK + ++ RK PK K K Y
Sbjct: 190 CMRNIHPIYHIKELMIKRELAKRPDLAEEDWSRFLPMFKKRNVA-RKKPKNIKPKENKVY 248
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 249 TPFPPAQ 255
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 54/91 (59%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDN-------------------PHEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKPEDNVSGMPFAEESSFMTLFPKYREAYLKSVWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTR+T+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRRTYDPAIILKARDLIKLLARSVPF 110
>gi|325187445|emb|CCA21983.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 417
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 169/247 (68%), Gaps = 41/247 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP+V AL+ + I EL+++EGSM+V TTRKT DP+I++KARD+IKLL+RS+
Sbjct: 104 REKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKLLARSI 163
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV +L+DD+ CDIIKIG LV+NK+RFVKRRQRL+GP+G T K+IELLTNCY+LVQG
Sbjct: 164 PVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCYILVQG 223
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G ++GL VR IVED
Sbjct: 224 NTVAAMG---------------------------------------SYQGLRSVRNIVED 244
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
NIHPIYN+K LMIKRELAKD L+NENW+RFLP FK K + +RK PK K EYTP
Sbjct: 245 CFANIHPIYNVKRLMIKRELAKDEALRNENWDRFLPQFKKKNV-QRKKPKDVHKKKEYTP 303
Query: 323 FPP-PQP 328
FPP P P
Sbjct: 304 FPPLPTP 310
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E WP+V AL+ + I EL+++EGSM+V TTRKT DP+
Sbjct: 93 ESSFATLFPKYR-----EKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPF 147
Query: 62 IIIKARDMIKLLSRSVP 78
I++KARD+IKLL+RS+P
Sbjct: 148 IVMKARDLIKLLARSIP 164
>gi|403214636|emb|CCK69136.1| hypothetical protein KNAG_0C00230 [Kazachstania naganishii CBS
8797]
Length = 349
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/245 (53%), Positives = 169/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RETYLKSVWKDVTKALDSHHIACTLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQ+D +CD+IKIGN+V NK+RFVKRRQRL+GP+G TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQEDTACDVIKIGNIVTNKERFVKRRQRLVGPDGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKELRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M N+HPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++++K K +K K YTP
Sbjct: 190 CMHNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKIKKEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 53/90 (58%), Gaps = 19/90 (21%)
Query: 9 IPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGSM 49
I EFK EDN YLK W V AL+ H I LD++EGSM
Sbjct: 21 IEEFKPEDNASGQPFAEESSFMTLFPKYRETYLKSVWKDVTKALDSHHIACTLDLVEGSM 80
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 81 TVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|325187446|emb|CCA21984.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 377
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 169/247 (68%), Gaps = 41/247 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP+V AL+ + I EL+++EGSM+V TTRKT DP+I++KARD+IKLL+RS+
Sbjct: 64 REKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKLLARSI 123
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV +L+DD+ CDIIKIG LV+NK+RFVKRRQRL+GP+G T K+IELLTNCY+LVQG
Sbjct: 124 PVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCYILVQG 183
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G ++GL VR IVED
Sbjct: 184 NTVAAMG---------------------------------------SYQGLRSVRNIVED 204
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
NIHPIYN+K LMIKRELAKD L+NENW+RFLP FK K + +RK PK K EYTP
Sbjct: 205 CFANIHPIYNVKRLMIKRELAKDEALRNENWDRFLPQFKKKNV-QRKKPKDVHKKKEYTP 263
Query: 323 FPP-PQP 328
FPP P P
Sbjct: 264 FPPLPTP 270
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E WP+V AL+ + I EL+++EGSM+V TTRKT DP+
Sbjct: 53 ESSFATLFPKYR-----EKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPF 107
Query: 62 IIIKARDMIKLLSRSVP 78
I++KARD+IKLL+RS+P
Sbjct: 108 IVMKARDLIKLLARSIP 124
>gi|325187444|emb|CCA21982.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 408
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/247 (55%), Positives = 169/247 (68%), Gaps = 41/247 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP+V AL+ + I EL+++EGSM+V TTRKT DP+I++KARD+IKLL+RS+
Sbjct: 95 REKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKLLARSI 154
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV +L+DD+ CDIIKIG LV+NK+RFVKRRQRL+GP+G T K+IELLTNCY+LVQG
Sbjct: 155 PVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCYILVQG 214
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G ++GL VR IVED
Sbjct: 215 NTVAAMG---------------------------------------SYQGLRSVRNIVED 235
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
NIHPIYN+K LMIKRELAKD L+NENW+RFLP FK K + +RK PK K EYTP
Sbjct: 236 CFANIHPIYNVKRLMIKRELAKDEALRNENWDRFLPQFKKKNV-QRKKPKDVHKKKEYTP 294
Query: 323 FPP-PQP 328
FPP P P
Sbjct: 295 FPPLPTP 301
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E WP+V AL+ + I EL+++EGSM+V TTRKT DP+
Sbjct: 84 ESSFATLFPKYR-----EKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPF 138
Query: 62 IIIKARDMIKLLSRSVP 78
I++KARD+IKLL+RS+P
Sbjct: 139 IVMKARDLIKLLARSIP 155
>gi|367002377|ref|XP_003685923.1| 90S preribosome/SSU processome component KRR1 [Tetrapisispora
phaffii CBS 4417]
gi|357524222|emb|CCE63489.1| hypothetical protein TPHA_0E04000 [Tetrapisispora phaffii CBS 4417]
Length = 316
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/245 (52%), Positives = 168/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H + L++++GSMTV TTRKT+DPYII+KARD+IKLL+RSV
Sbjct: 49 REVYLKSVWKDVTKALDKHHVACTLNLVDGSMTVSTTRKTYDPYIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L DD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILDDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL ++RR+VED
Sbjct: 169 NTVSVMGPFK---------------------------------------GLKEIRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M+N+HPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++++K K ++ K YTP
Sbjct: 190 AMRNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKSKKPKREKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPSQ 254
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
YLK W V AL+ H + L++++GSMTV TTRKT+DPYII+KARD+IKLL+RSVP+
Sbjct: 52 YLKSVWKDVTKALDKHHVACTLNLVDGSMTVSTTRKTYDPYIILKARDLIKLLARSVPF 110
>gi|390600873|gb|EIN10267.1| ribosomal RNA assembly protein mis3 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 386
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 167/270 (61%), Gaps = 64/270 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V AL+ H I LD+I GSM+V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 60 REKYLQEVWSAVTAALDSHGIACTLDLIHGSMSVKTTRKTYDPYIILKARDMIKLLARGV 119
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++LQDD++CDIIKIGNLV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 120 AVGQAVKILQDDMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTRCYVLVQG 179
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 180 STVSVMGP---------------------------------------YKSLKEVRRIVLD 200
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-----SKRK-------- 309
MKNIHPIY IK LMIKRELAKDPKL E W+RFLP F+ K L + RK
Sbjct: 201 CMKNIHPIYRIKELMIKRELAKDPKLATEPWDRFLPQFRRKHLKTSEKTARKNAAVEAKK 260
Query: 310 ------------MPKKRKTKSEYTPFPPPQ 327
M KK K K YTPFPP Q
Sbjct: 261 EARAAAGLDPEEMAKKDKAKKVYTPFPPAQ 290
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V AL+ H I LD+I GSM+V TTRKT+DPY
Sbjct: 49 ESSFATLFPKYREK-----YLQEVWSAVTAALDSHGIACTLDLIHGSMSVKTTRKTYDPY 103
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDMIKLL+R V
Sbjct: 104 IILKARDMIKLLARGV 119
>gi|449297121|gb|EMC93139.1| hypothetical protein BAUCODRAFT_36810 [Baudoinia compniacensis UAMH
10762]
Length = 331
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 171/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WP++ LE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REIYLKQSWPMITRVLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++++D ++CD+IKI LV+NK+RFVKRRQR++GPNG TLK++ELLT Y+LVQG
Sbjct: 108 PSPQAVKIMEDGVACDVIKIRGLVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K L +VRR++ED
Sbjct: 168 NTVSVMG---------------------------------------AYKSLKEVRRVIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+LKNENW+RFLP+FK + LSKR+ P K K K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPELKNENWDRFLPHFKKRNLSKRRKPFKVVDKAKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP + +S+ +
Sbjct: 249 TPFPPEREKSKVD 261
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 45/58 (77%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLK+ WP++ LE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSVP
Sbjct: 51 YLKQSWPMITRVLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVP 108
>gi|344233678|gb|EGV65550.1| eukaryotic type KH-domain (KH-domain type I) [Candida tenuis ATCC
10573]
gi|344233679|gb|EGV65551.1| hypothetical protein CANTEDRAFT_113171 [Candida tenuis ATCC 10573]
Length = 338
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/245 (53%), Positives = 166/245 (67%), Gaps = 41/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V AL+ H I +LD++EGSMTV TT KT+DP II+KARD+IKLL+RSV
Sbjct: 49 REQYLRSIWNDVTKALDKHHIACQLDLVEGSMTVRTTGKTFDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV+VLQDD +C++IKIGN+V NK RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKVLQDDTACEVIKIGNVVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP + GL VRR+VED
Sbjct: 169 NTVSVMGP---------------------------------------YSGLKTVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIK+EL+K P+L NE+W RFLP FK + + ++K PK+ K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKQELSKKPELANEDWSRFLPKFKKQNVQRKKAPKRE--KKVYTP 247
Query: 323 FPPPQ 327
FPP Q
Sbjct: 248 FPPQQ 252
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+YL+ W V AL+ H I +LD++EGSMTV TT KT+DP II+KARD+IKLL+RSVP+
Sbjct: 51 QYLRSIWNDVTKALDKHHIACQLDLVEGSMTVRTTGKTFDPAIILKARDLIKLLARSVPF 110
>gi|260941444|ref|XP_002614888.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
gi|238851311|gb|EEQ40775.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
Length = 373
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/245 (54%), Positives = 167/245 (68%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+ W V AL+ H I +LD++EGSMTV TTRKT+DP +I+KARD+IKLL+RSV
Sbjct: 49 RETYLRSIWSEVTKALDSHHIACQLDLVEGSMTVKTTRKTFDPAMILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK+RF KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNFVSNKERFTKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRR+VED
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY IK LMIK+ELAK+P+L +E+W RFLP FK K ++ RK K K YTP
Sbjct: 190 CMKNVHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFKKKNVA-RKKTAIEKKKKVYTP 248
Query: 323 FPPPQ 327
FPP Q
Sbjct: 249 FPPAQ 253
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
K+ EFK EDN YL+ W V AL+ H I +LD++EGS
Sbjct: 20 KVEEFKPEDNASGQPFAEESSFMTLFPKYRETYLRSIWSEVTKALDSHHIACQLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP +I+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTFDPAMILKARDLIKLLARSVPF 110
>gi|453082814|gb|EMF10861.1| eukaryotic type KH-domain (KH-domain type I) [Mycosphaerella
populorum SO2202]
Length = 342
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 174/260 (66%), Gaps = 41/260 (15%)
Query: 76 SVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMI 135
S + +E YLK WP + ALE I LD+IEGSMTV TTRKT+DP I+ ARD+I
Sbjct: 41 STLFPKYRELYLKTHWPRITKALEKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLI 100
Query: 136 KLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTN 195
KLL+RSVP ++A+++L+D ++CD+IKI +V+NK+RFVKRRQR++GPNG TLK++ LLT
Sbjct: 101 KLLARSVPLDEAMKILEDGVACDVIKIRGMVRNKERFVKRRQRILGPNGSTLKALSLLTQ 160
Query: 196 CYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255
Y+LVQG TV+ +G +K L +
Sbjct: 161 TYILVQGNTVSIMG---------------------------------------GYKNLKE 181
Query: 256 VRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK-- 313
VRR+VED M+NIHPIY+IK LMIKRELAKDP+LKNENWERFLP+FK + LSKR++P K
Sbjct: 182 VRRVVEDCMQNIHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRVPFKVN 241
Query: 314 RKTKSEYTPFPPPQPESEAN 333
K K YTPFPPPQ +S+ +
Sbjct: 242 DKAKRVYTPFPPPQEKSKVD 261
>gi|219117602|ref|XP_002179593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408646|gb|EEC48579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 379
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 169/251 (67%), Gaps = 39/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL++ WP+V L+ H + EL+++EGSMTV TT++T DPY+I+KARD++KLL+RS+
Sbjct: 66 REAYLRQIWPVVTRHLDQHGVACELNLVEGSMTVRTTKRTKDPYVILKARDLLKLLARSL 125
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++LQDD CDI+KIG LV+NK+RFVKRRQRL+GP+G TLK++ELLT CY+LVQG
Sbjct: 126 PVAQAVKILQDDYQCDIVKIGGLVRNKERFVKRRQRLLGPDGSTLKALELLTGCYILVQG 185
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G KGL Q RR+V D
Sbjct: 186 NTVSIMG--------------------------------------DSWKGLKQARRVVLD 207
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
+KNIHP+Y++K LMI++ELAKDP L+NE+W RFLP F+ K + +K P RKTK YTP
Sbjct: 208 CLKNIHPVYHLKRLMIQKELAKDPALQNEDWSRFLPQFQKKNVQTKK-PSVRKTKKSYTP 266
Query: 323 FPPPQPESEAN 333
FPP Q S+ +
Sbjct: 267 FPPAQQPSKID 277
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 57/77 (74%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ YL++ WP+V L+ H + EL+++EGSMTV TT++T DPY
Sbjct: 55 ESSFATLFPKYR-----EAYLRQIWPVVTRHLDQHGVACELNLVEGSMTVRTTKRTKDPY 109
Query: 62 IIIKARDMIKLLSRSVP 78
+I+KARD++KLL+RS+P
Sbjct: 110 VILKARDLLKLLARSLP 126
>gi|384500400|gb|EIE90891.1| ribosomal RNA assembly protein mis3 [Rhizopus delemar RA 99-880]
Length = 290
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 139/251 (55%), Positives = 171/251 (68%), Gaps = 40/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV ALE I LD++EGSMTV TTRK+WDPY I+KARD+IKLL+RSV
Sbjct: 60 REAYLKECWPLVTKALEKWGIACVLDLVEGSMTVKTTRKSWDPYSILKARDLIKLLARSV 119
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA++++ D ++CDIIKIGN+ +NK+RFVKRRQRLIGPNG TLK+IELLT CYM++QG
Sbjct: 120 PFPQAIKIMDDGVACDIIKIGNITRNKERFVKRRQRLIGPNGSTLKAIELLTKCYMMIQG 179
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +RRIV D
Sbjct: 180 NTVSAMGPYK---------------------------------------GLKDLRRIVLD 200
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY+IK LMIKRELAKDPKL E+W+RFLP FK K + +K K K EYTP
Sbjct: 201 CMKNIHPIYHIKELMIKRELAKDPKLATESWDRFLPKFKKKNIKSKKK-VIEKPKKEYTP 259
Query: 323 FPPPQPESEAN 333
FPP +S+ +
Sbjct: 260 FPPAPVKSKVD 270
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ YLKECWPLV ALE I LD++EGSMTV TTRK+WDPY
Sbjct: 49 ESSFATLFPKYR-----EAYLKECWPLVTKALEKWGIACVLDLVEGSMTVKTTRKSWDPY 103
Query: 62 IIIKARDMIKLLSRSVPY 79
I+KARD+IKLL+RSVP+
Sbjct: 104 SILKARDLIKLLARSVPF 121
>gi|452979973|gb|EME79735.1| hypothetical protein MYCFIDRAFT_156958 [Pseudocercospora fijiensis
CIRAD86]
Length = 341
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 170/253 (67%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK WP + LE H I LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLKSSWPTITKQLEKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CD+IKI +V+NK+RFVKRRQR++GPNG TLK++ELLT Y+LVQG
Sbjct: 108 PTPQALKILEDGMACDVIKIRGMVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K L +VRR+VED
Sbjct: 168 NTVSVMG---------------------------------------GYKNLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK LMIKRELAKDP+LKNENWERFLP+FK + L+KR+ P K+K Y
Sbjct: 189 CMANIHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLAKRRKPFNVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP Q +S+ +
Sbjct: 249 TPFPPAQEKSKVD 261
>gi|448082190|ref|XP_004195077.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359376499|emb|CCE87081.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 364
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 169/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL++ W V L H I +LD++EGSMTV TTRKT+DP +I+KARD+IKLL+RSV
Sbjct: 49 REQYLRQIWGDVTRELSKHHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD++KIGN V NK RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDVACDVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL VRR+VED
Sbjct: 169 STVSAMGPYK---------------------------------------GLKVVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHPIY+IK LM+K+ELA +P L +E+W RFLP FK + ++++K+ + +K K YTP
Sbjct: 190 CMNNIHPIYHIKELMLKQELASNPDLAHEDWSRFLPQFKKRNVARKKLKQSKKEKKVYTP 249
Query: 323 FPPPQ 327
FPPPQ
Sbjct: 250 FPPPQ 254
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 19/88 (21%)
Query: 11 EFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
EFK+EDN +YL++ W V L H I +LD++EGSMTV
Sbjct: 23 EFKEEDNASGLPFAEESTFMTLFPKYREQYLRQIWGDVTRELSKHHIDCQLDLVEGSMTV 82
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TTRKT+DP +I+KARD+IKLL+RSVP+
Sbjct: 83 KTTRKTYDPAMILKARDLIKLLARSVPF 110
>gi|365981169|ref|XP_003667418.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
gi|343766184|emb|CCD22175.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
Length = 317
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 167/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL H + LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RETYLKSVWNDVTRALNTHNLACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+DD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILEDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL +VRR+VED
Sbjct: 169 NTVSVMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++++K K +K K YTP
Sbjct: 190 CMKNIHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKVKKEKKIYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 55/96 (57%), Gaps = 21/96 (21%)
Query: 3 NAWSMKIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELD 43
N W KI EFK EDN YLK W V AL H + LD
Sbjct: 17 NKW--KIEEFKPEDNASGLPFAEESSFMTLFPKYRETYLKSVWNDVTRALNTHNLACVLD 74
Query: 44 VIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
++EGSMTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 75 LVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|406604799|emb|CCH43784.1| Ribosomal RNA assembly protein KRR1 [Wickerhamomyces ciferrii]
Length = 355
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 168/251 (66%), Gaps = 45/251 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WP V AL+ H I LD++EG+M+V TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 REVYLKQIWPDVTKALDKHHIACTLDLVEGAMSVKTTRKTFDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RF KRRQRL+GP+G TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNFVTNKDRFTKRRQRLVGPSGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP +GL +VRR+VED
Sbjct: 169 NTVSAMGP---------------------------------------FRGLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--- 319
MKNIHPIY+IK LMIKREL K P+L NE+W R+LP FK K ++++K + R + +
Sbjct: 190 CMKNIHPIYHIKELMIKRELQKKPELANEDWSRYLPQFKKKNVARKKPKQVRDDQEKKKE 249
Query: 320 ---YTPFPPPQ 327
YTPFPP Q
Sbjct: 250 KKVYTPFPPAQ 260
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 48/59 (81%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
YLK+ WP V AL+ H I LD++EG+M+V TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 52 YLKQIWPDVTKALDKHHIACTLDLVEGAMSVKTTRKTFDPAIILKARDLIKLLARSVPF 110
>gi|50304523|ref|XP_452216.1| 90S preribosome/SSU processome component KRR1 [Kluyveromyces lactis
NRRL Y-1140]
gi|49641349|emb|CAH01067.1| KLLA0C00506p [Kluyveromyces lactis]
Length = 330
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 169/245 (68%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V +L+ H I EL+++EGSMTV TTRKT+DP +I+KARD+IKLL+RSV
Sbjct: 49 REAYLKSVWKDVTRSLDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+DD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILEDDVACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRR+VED
Sbjct: 169 NTVSVMGPYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKRELAK P+L E+W RFLP FK + ++ RK PKK K K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFKKRNVA-RKKPKKIKEKKIYTP 248
Query: 323 FPPPQ 327
FPP Q
Sbjct: 249 FPPAQ 253
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
YLK W V +L+ H I EL+++EGSMTV TTRKT+DP +I+KARD+IKLL+RSVP+
Sbjct: 52 YLKSVWKDVTRSLDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPF 110
>gi|410078430|ref|XP_003956796.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
gi|372463381|emb|CCF57661.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
Length = 344
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 168/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V ALE H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RESYLKSVWKDVTKALEKHHIACILDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA+++L+D+++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAIKILEDNMACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M N+HPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++++K K RK K YTP
Sbjct: 190 CMLNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKIRKEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPTQ 254
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 46/59 (77%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
YLK W V ALE H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 52 YLKSVWKDVTKALEKHHIACILDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|308806503|ref|XP_003080563.1| rRNA processing protein (ISS) [Ostreococcus tauri]
gi|116059023|emb|CAL54730.1| rRNA processing protein (ISS) [Ostreococcus tauri]
Length = 419
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/260 (52%), Positives = 172/260 (66%), Gaps = 41/260 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S +V + +E+YL+E WP V AL+ + EL+++EGSMTV TTRKT+DPYII+KARD
Sbjct: 78 SFAVLFPKYREKYLREVWPSVTRALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIVKARD 137
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLLSRSVP QA++VL DD +CD+IKIG +V+NK+RFVKRRQRLIGPNG TLK+IE+L
Sbjct: 138 LIKLLSRSVPAPQALKVLDDDTNCDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEML 197
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TV+ +G K GL
Sbjct: 198 TGCYVLVQGNTVSVMGGWK---------------------------------------GL 218
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
VR+IVED MKN HPIY+IK LMIKREL KDP+L ++W+RFLP FK K + +RK P+K
Sbjct: 219 KTVRKIVEDAMKNTHPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNV-QRKKPQK 277
Query: 314 RKTKSEYTPFPPPQPESEAN 333
K E FPP QP S+ +
Sbjct: 278 -VGKKERAVFPPAQPMSKVD 296
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 57/88 (64%), Gaps = 17/88 (19%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
++ F EDNPH +YL+E WP V AL+ + EL+++EGSMT
Sbjct: 60 RVDPFTAEDNPHGVLEESSFAVLFPKYREKYLREVWPSVTRALKEQGVSCELNLVEGSMT 119
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVP 78
V TTRKT+DPYII+KARD+IKLLSRSVP
Sbjct: 120 VRTTRKTFDPYIIVKARDLIKLLSRSVP 147
>gi|353239326|emb|CCA71242.1| probable KRR1-required for 40S ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 350
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 178/303 (58%), Gaps = 74/303 (24%)
Query: 56 KTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMT 115
K WD I + + L +R+ Y +E+YL+E W V ALE H I LD+I GSM+
Sbjct: 21 KPWDTDDIDHGKSNL-LQTRTTRY---REKYLREVWGAVTRALEPHGIACTLDLINGSMS 76
Query: 116 VFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR 175
V TTRKT+DPYII+KARDMIKLL+R V QAV++L D ++CDIIKIGN+V+NK+RFVKR
Sbjct: 77 VRTTRKTFDPYIILKARDMIKLLARGVAVGQAVKILDDAVACDIIKIGNIVRNKERFVKR 136
Query: 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNC 235
RQR+IGP+G TLK+IELLT CY+LVQG TV+A+GP
Sbjct: 137 RQRIIGPDGSTLKAIELLTGCYVLVQGNTVSAMGP------------------------- 171
Query: 236 YMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWER 295
+K L +VRRIV D MKNIHPIY IK LMIKRELAKDPKL E+W+R
Sbjct: 172 --------------YKSLKEVRRIVLDCMKNIHPIYRIKELMIKRELAKDPKLATESWDR 217
Query: 296 FLPNFKSKTL-SKRKMPKKR------------------------------KTKSEYTPFP 324
FLP F+ + L S K KKR K K YTPFP
Sbjct: 218 FLPKFRKRHLTSAEKSAKKREAAATKAEARQAAAASSGQPMDVDVHEPPKKKKKVYTPFP 277
Query: 325 PPQ 327
PPQ
Sbjct: 278 PPQ 280
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 77
+YL+E W V ALE H I LD+I GSM+V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 46 KYLREVWGAVTRALEPHGIACTLDLINGSMSVRTTRKTFDPYIILKARDMIKLLARGV 103
>gi|388854361|emb|CCF51945.1| probable KRR1-required for 40S ribosome biogenesis [Ustilago
hordei]
Length = 377
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 139/275 (50%), Positives = 170/275 (61%), Gaps = 65/275 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W V +ALE H I LD++EGSMTV TTRKT+DPYII+KARDMI+LLSRSV
Sbjct: 62 RERYLKEVWGHVTSALEKHGIACTLDLVEGSMTVKTTRKTYDPYIILKARDMIRLLSRSV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+D + CD+IKIG+L++NK+RFVKRRQR+IGPNG TLK+IELLT CY+LVQG
Sbjct: 122 PFPQAVKILEDGVECDVIKIGHLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A +G K L +VRRIV D
Sbjct: 182 NTVSA---------------------------------------MGHFKALKEVRRIVID 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--- 319
+KNIHPIY+IK LMIKRELAKDPKL ENW+RFLP FK + + + P T S
Sbjct: 203 CLKNIHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKRNVKSK--PASTTTDSANGV 260
Query: 320 ---------------------YTPFPPPQPESEAN 333
YTPFPPPQ S+ +
Sbjct: 261 ATGANAVGEGSSKKKEIKKKTYTPFPPPQQPSKID 295
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 59/78 (75%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P++++ YLKE W V +ALE H I LD++EGSMTV TTRKT+DPY
Sbjct: 51 ESSFATLFPKYRER-----YLKEVWGHVTSALEKHGIACTLDLVEGSMTVKTTRKTYDPY 105
Query: 62 IIIKARDMIKLLSRSVPY 79
II+KARDMI+LLSRSVP+
Sbjct: 106 IILKARDMIRLLSRSVPF 123
>gi|344304899|gb|EGW35131.1| hypothetical protein SPAPADRAFT_58320 [Spathaspora passalidarum
NRRL Y-27907]
Length = 351
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 168/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+EEYL+ W V AL+ HFIK EL++IEGSMTV TT KT+DP +I+KARD+IKLL+RSV
Sbjct: 49 REEYLRNIWSQVTQALDKHFIKCELNLIEGSMTVKTTPKTFDPAMILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFGQAVKILQDDIACDVIKIGNFVNNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M+NIHPIY IK LMIK+EL+K P+L NE+W RFLP+FK + + ++K K K YTP
Sbjct: 190 CMRNIHPIYYIKELMIKQELSKKPELANEDWSRFLPSFKKRNVVRKKKKMANKEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 56/90 (62%), Gaps = 19/90 (21%)
Query: 9 IPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGSM 49
I EFK EDN EYL+ W V AL+ HFIK EL++IEGSM
Sbjct: 21 IDEFKPEDNASGLHFAEESSFMTLFPKYREEYLRNIWSQVTQALDKHFIKCELNLIEGSM 80
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TV TT KT+DP +I+KARD+IKLL+RSVP+
Sbjct: 81 TVKTTPKTFDPAMILKARDLIKLLARSVPF 110
>gi|328769725|gb|EGF79768.1| hypothetical protein BATDEDRAFT_35295 [Batrachochytrium
dendrobatidis JAM81]
Length = 369
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 133/245 (54%), Positives = 167/245 (68%), Gaps = 41/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WP++ +L+ + LD++EGS+TV TTRKT+DPYII+KARDMI+LLSRSV
Sbjct: 68 RETYLREVWPMITASLDKVGLACALDLVEGSITVKTTRKTYDPYIILKARDMIRLLSRSV 127
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
+ QAV++L+D ++CDIIKIG LV+NK+RFVKRRQRL+GP G TLK+IELLTNCY+LVQG
Sbjct: 128 QFNQAVKILEDGVACDIIKIGGLVRNKERFVKRRQRLLGPKGSTLKAIELLTNCYVLVQG 187
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL VRR++ D
Sbjct: 188 NTVAAMGPFK---------------------------------------GLKDVRRLILD 208
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY+IK LMIKRELAKD KLK E+W+RFLP FK + + + K + K E TP
Sbjct: 209 CMKNIHPIYHIKELMIKRELAKDEKLKEESWDRFLPKFKKRNV--QSSKKVKIVKKERTP 266
Query: 323 FPPPQ 327
FPPPQ
Sbjct: 267 FPPPQ 271
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 17/89 (19%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K+ EFK E NPH YL+E WP++ +L+ + LD++EGS+T
Sbjct: 41 KVDEFKPEHNPHPFLAESSFATLFPKYRETYLREVWPMITASLDKVGLACALDLVEGSIT 100
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
V TTRKT+DPYII+KARDMI+LLSRSV +
Sbjct: 101 VKTTRKTYDPYIILKARDMIRLLSRSVQF 129
>gi|340378663|ref|XP_003387847.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Amphimedon
queenslandica]
Length = 269
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 157/216 (72%), Gaps = 39/216 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL++ WPLV+ L H IK++LD+IEGSMTV TTRKT+DPYII+KARDMIKLL+RSV
Sbjct: 60 REKYLQKVWPLVQKCLNDHGIKSQLDLIEGSMTVSTTRKTFDPYIIVKARDMIKLLARSV 119
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+++L DD +CDIIKI +LV+NK RFV+RRQRLIGP+G TLK+IELLT CY++VQG
Sbjct: 120 PYEQAIKILDDDKACDIIKIRSLVRNKDRFVRRRQRLIGPDGATLKAIELLTQCYIMVQG 179
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP GL Q+RR+VED
Sbjct: 180 ATVSAIGP---------------------------------------FTGLKQLRRVVED 200
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
TMKNIHP+Y+IK +MIKREL KDP LKNE+W+RFLP
Sbjct: 201 TMKNIHPVYHIKTMMIKRELMKDPSLKNESWDRFLP 236
>gi|397640808|gb|EJK74329.1| hypothetical protein THAOC_03996 [Thalassiosira oceanica]
Length = 420
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 132/262 (50%), Positives = 169/262 (64%), Gaps = 56/262 (21%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WPLV L+ + I EL+++EGSMTV TTRKT DPYII+KARD+IKLL+RS+
Sbjct: 77 REKYLREVWPLVTRTLDKYKIACELNLVEGSMTVRTTRKTSDPYIILKARDLIKLLARSI 136
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L D+ +CDIIKIG LV+NK+RFVKRRQRLIGP+G TLK++ELLT CY+LVQG
Sbjct: 137 PAPQALKILNDEYNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQG 196
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G H KG+ +VR +V +
Sbjct: 197 NTVSVMGTH---------------------------------------KGIKKVRTVVIE 217
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--------- 313
M NIHP+YNIK LMI +EL KDPKL+NE+WERFLP F+ K LSKR+ P++
Sbjct: 218 CMNNIHPVYNIKRLMIMKELEKDPKLQNESWERFLPTFQKKNLSKRRKPRQVVEEAQKAA 277
Query: 314 --------RKTKSEYTPFPPPQ 327
R K YTPFPP Q
Sbjct: 278 KNGGEGKVRSKKKSYTPFPPAQ 299
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E WPLV L+ + I EL+++EGSMTV TTRKT DPY
Sbjct: 66 ESSFATLFPKYREK-----YLREVWPLVTRTLDKYKIACELNLVEGSMTVRTTRKTSDPY 120
Query: 62 IIIKARDMIKLLSRSVP 78
II+KARD+IKLL+RS+P
Sbjct: 121 IILKARDLIKLLARSIP 137
>gi|258577481|ref|XP_002542922.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
gi|237903188|gb|EEP77589.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
Length = 368
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 177/253 (69%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WP++ ALE I LD++EGSMTV TTRKT+DP I+KARD+IKLL+RSV
Sbjct: 70 REVYLKETWPIITRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSV 129
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI NLV+NK+RFVKRRQR++GP+G TLK++ELLT Y+LVQG
Sbjct: 130 PTPQALKILEDGVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTETYLLVQG 189
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL +VRR+VED
Sbjct: 190 NTVAAMGPFK---------------------------------------GLKEVRRVVED 210
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY++K LMIKRELAKDPKL NE+W+RFLP+FK +TL+KRK P K K+K Y
Sbjct: 211 CMNNIHPIYHVKELMIKRELAKDPKLANESWDRFLPHFKKRTLNKRKQPFKVTDKSKKVY 270
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 271 TPFPPPQEKSKVD 283
>gi|366991194|ref|XP_003675363.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
gi|342301227|emb|CCC68994.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
Length = 327
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 167/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL H + LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RETYLKSVWNDVTRALNKHNLGCVLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +GL +VRR+VED
Sbjct: 169 NTVSVMGP---------------------------------------FQGLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKRELAK P+L NE+W RFLP FK + ++++K K RK K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKVRKEKKIYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 19/90 (21%)
Query: 9 IPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGSM 49
I EFK EDN YLK W V AL H + LD++EGSM
Sbjct: 21 IEEFKPEDNASGLPFAEESSFMTLFPKYRETYLKSVWNDVTRALNKHNLGCVLDLVEGSM 80
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 81 TVKTTRKTFDPAIILKARDLIKLLARSVPF 110
>gi|339234355|ref|XP_003382294.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978714|gb|EFV61660.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 276
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 128/232 (55%), Positives = 159/232 (68%), Gaps = 44/232 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+EC+PL++ AL H IKAE+D + GSMTV TTRKTWDPY+I+KARD+IKLL+RSV
Sbjct: 42 REKYLRECFPLLQKALSEHGIKAEMDALRGSMTVRTTRKTWDPYVILKARDLIKLLARSV 101
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P EQAVR+L+DD +CDIIKI LV+N+ RFVKRRQRLIGPNGCTLK+IELLTNCY+++QG
Sbjct: 102 PIEQAVRILEDDTACDIIKISGLVRNRVRFVKRRQRLIGPNGCTLKAIELLTNCYVMIQG 161
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP + GL VR+IVED
Sbjct: 162 NTVSAVGP---------------------------------------YSGLRDVRKIVED 182
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKR 314
M NIHP LM+K+EL KDPKL ENW+RFLP F+ K S++K KR
Sbjct: 183 CMNNIHP-----TLMLKKELMKDPKLATENWDRFLPKFRKKLTSQKKKSSKR 229
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
N W KIP F ++DNP +YL+EC+PL++ AL H IKAE+D +
Sbjct: 12 NIW--KIPSFTQKDNPQGLLCESNFATLFPKYREKYLRECFPLLQKALSEHGIKAEMDAL 69
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
GSMTV TTRKTWDPY+I+KARD+IKLL+RSVP E
Sbjct: 70 RGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIE 104
>gi|302309082|ref|NP_986293.2| 90S preribosome/SSU processome component KRR1 [Ashbya gossypii ATCC
10895]
gi|299790936|gb|AAS54117.2| AFR744Wp [Ashbya gossypii ATCC 10895]
gi|374109527|gb|AEY98433.1| FAFR744Wp [Ashbya gossypii FDAG1]
Length = 343
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 170/245 (69%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V ALE H I EL+++EGSM+V TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RETYLKSIWKEVTRALEKHHIACELNLVEGSMSVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++LQDDI+CD+IKIGN+V +K+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PLPQAIKILQDDIACDVIKIGNIVASKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRR+VED
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M+NIHPIY+IK LMIKRELAK P+L E+W RFLP FK + ++ RK PKK K K YTP
Sbjct: 190 CMRNIHPIYHIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVA-RKKPKKIKEKKVYTP 248
Query: 323 FPPPQ 327
FPP Q
Sbjct: 249 FPPAQ 253
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 46/58 (79%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLK W V ALE H I EL+++EGSM+V TTRKT+DP II+KARD+IKLL+RSVP
Sbjct: 52 YLKSIWKEVTRALEKHHIACELNLVEGSMSVKTTRKTYDPAIILKARDLIKLLARSVP 109
>gi|223998947|ref|XP_002289146.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
gi|220974354|gb|EED92683.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
Length = 412
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 129/249 (51%), Positives = 168/249 (67%), Gaps = 40/249 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WPLV +L+ + + EL+++EGSMTV TT+KT DPYII+KARD+IKLL+RS+
Sbjct: 74 REKYLREVWPLVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPYIILKARDLIKLLARSI 133
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L DD C+IIKIG LV+NK+RFVKRRQRLIGP+G TLK++ELLT CY+LVQG
Sbjct: 134 PAPQALKILNDDHHCEIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQG 193
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +KG+ Q+ R ++ D
Sbjct: 194 NTVSVMGTYKGIKQT---------------------------------------RNVILD 214
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHP+YNIK LMI REL +DPKLK E+WERFLP FK K + +RK P + K K YTP
Sbjct: 215 CMNNIHPVYNIKRLMIMRELERDPKLKEESWERFLPTFKKKNVKRRK-PHQLKKKKSYTP 273
Query: 323 FPPPQPESE 331
FPP Q S+
Sbjct: 274 FPPAQQPSK 282
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E WPLV +L+ + + EL+++EGSMTV TT+KT DPY
Sbjct: 63 ESSFATLFPKYREK-----YLREVWPLVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPY 117
Query: 62 IIIKARDMIKLLSRSVP 78
II+KARD+IKLL+RS+P
Sbjct: 118 IILKARDLIKLLARSIP 134
>gi|255080030|ref|XP_002503595.1| predicted protein [Micromonas sp. RCC299]
gi|226518862|gb|ACO64853.1| predicted protein [Micromonas sp. RCC299]
Length = 398
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 130/246 (52%), Positives = 167/246 (67%), Gaps = 39/246 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V AL+ I EL+++EGSMTV TTRKT+DPYIIIK+RD+IKLLSRSV
Sbjct: 71 REKYLREVWPSVTRALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++LQDD+ CD+IKIG +V+NK+R+VKRRQRLIGPNG TLK+IE+LTNCY+LVQG
Sbjct: 131 PAPQALKILQDDVQCDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTNCYVLVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G KGL VR+I+ED
Sbjct: 191 NTVSCMG---------------------------------------GWKGLKMVRKIIED 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M+N+HPIY+IK LMIKRELAKDP L +++W+RFLP FK K + ++K K K K +
Sbjct: 212 CMRNMHPIYHIKELMIKRELAKDPALADQSWDRFLPKFKKKNVQRKKPAKIGKGKKDQVF 271
Query: 323 FPPPQP 328
P PQP
Sbjct: 272 PPAPQP 277
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 57/88 (64%), Gaps = 17/88 (19%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K+ F K+DNP +YL+E WP V AL+ I EL+++EGSMT
Sbjct: 44 KVDPFTKDDNPDGLLEESSFATLFPKYREKYLREVWPSVTRALKECGIACELNLVEGSMT 103
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVP 78
V TTRKT+DPYIIIK+RD+IKLLSRSVP
Sbjct: 104 VRTTRKTFDPYIIIKSRDLIKLLSRSVP 131
>gi|409050127|gb|EKM59604.1| hypothetical protein PHACADRAFT_191975 [Phanerochaete carnosa
HHB-10118-sp]
Length = 390
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/270 (50%), Positives = 164/270 (60%), Gaps = 64/270 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E W V ALE H I LD+I GSM+V TTR+T+DPYII+KARDMIKLL+R V
Sbjct: 65 RERYLREVWSAVTKALETHGIACTLDLIHGSMSVRTTRRTYDPYIILKARDMIKLLARGV 124
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L D I+CDIIKIGN+V+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 125 NIGQAVKILDDAIACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 184
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRRIV D
Sbjct: 185 STVSVMGPYK---------------------------------------GLKEVRRIVLD 205
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR-------------- 308
MKNIHPIY IK LMIKRELAKDP L E+W+RFLP F+ K L
Sbjct: 206 CMKNIHPIYRIKELMIKRELAKDPALATESWDRFLPQFRKKHLKTSEKTAKKNEKLAEKN 265
Query: 309 -----------KMPKKRKTKSEYTPFPPPQ 327
K+ K+ K K YTPFPPPQ
Sbjct: 266 TARETAGLPPIKLTKEEKRKKVYTPFPPPQ 295
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ YL+E W V ALE H I LD+I GSM+V TTR+T+DPY
Sbjct: 54 ESSFATLFPKYR-----ERYLREVWSAVTKALETHGIACTLDLIHGSMSVRTTRRTYDPY 108
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDMIKLL+R V
Sbjct: 109 IILKARDMIKLLARGV 124
>gi|300121233|emb|CBK21614.2| unnamed protein product [Blastocystis hominis]
Length = 328
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/243 (54%), Positives = 159/243 (65%), Gaps = 39/243 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V L+ H I ELD IEG+MTV TTRKT DPYII+KARD+IKLL+RSV
Sbjct: 66 REQYLREVWPAVTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSV 125
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA+++L D++ CDIIKIG V K RF+KRRQRL+GP G TLK+IELLT+CYMLVQG
Sbjct: 126 PFNQAIKILDDNMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQG 185
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +G ++GL VRRI+ D
Sbjct: 186 NTVAVMG---------------------------------------SYQGLKTVRRIIID 206
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY IK LMIKRELAKDP LKNENW+RFLP FK + S + K K+ YTP
Sbjct: 207 CMKNIHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKSSKTKKVVVKEKNRYTP 266
Query: 323 FPP 325
FPP
Sbjct: 267 FPP 269
>gi|320163346|gb|EFW40245.1| ribosomal RNA assembly protein mis3 [Capsaspora owczarzaki ATCC
30864]
Length = 363
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 173/247 (70%), Gaps = 43/247 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WP V AL+ I ELD+IEGSMTV TT+KT+DP+II+KARD+IKLL+RSV
Sbjct: 64 REKYLKEVWPHVTKALDDVGIACELDLIEGSMTVRTTKKTFDPFIILKARDLIKLLARSV 123
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+DD+ CDIIKIGN+V+NK+RFVKRRQRL+GPNG TLK+IELLT+CY++VQG
Sbjct: 124 PLAQALKILEDDVVCDIIKIGNIVRNKERFVKRRQRLLGPNGATLKAIELLTDCYVMVQG 183
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G +K GL +VRRIVED
Sbjct: 184 NTVAAMGGYK---------------------------------------GLKEVRRIVED 204
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
+ N+HPIYNIK LMIKRELAKDP L E+W+RFLP FK K + ++K + TK E TP
Sbjct: 205 CLHNVHPIYNIKTLMIKRELAKDPALATESWDRFLPQFKKKNVKQKKP---KITKKEKTP 261
Query: 323 FPP-PQP 328
FPP PQP
Sbjct: 262 FPPLPQP 268
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YLKE WP V AL+ I ELD+IEGSMTV TT+KT+DP+
Sbjct: 53 ESSFATLFPKYREK-----YLKEVWPHVTKALDDVGIACELDLIEGSMTVRTTKKTFDPF 107
Query: 62 IIIKARDMIKLLSRSVP 78
II+KARD+IKLL+RSVP
Sbjct: 108 IILKARDLIKLLARSVP 124
>gi|336373198|gb|EGO01536.1| hypothetical protein SERLA73DRAFT_70716 [Serpula lacrymans var.
lacrymans S7.3]
Length = 381
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/269 (49%), Positives = 167/269 (62%), Gaps = 63/269 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V AL+ H I LD++ GSM+V TTRKT+DPY+++KARDMIKLL+R V
Sbjct: 52 REKYLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGV 111
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV+VLQDD++CDIIKIG+LV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 112 AISQAVKVLQDDVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 171
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 172 STVSVMGP---------------------------------------YKSLKEVRRIVLD 192
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-SKRKMPKK-------- 313
MKNIHPIY IK LMI+RELAKDPKL E+W+RFLP F+ + L + K KK
Sbjct: 193 CMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKTAKKNEKQAVKD 252
Query: 314 ---------------RKTKSEYTPFPPPQ 327
+ K YTPFPPPQ
Sbjct: 253 EARKAAGLDPAQKTDKTAKKVYTPFPPPQ 281
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V AL+ H I LD++ GSM+V TTRKT+DPY
Sbjct: 41 ESSFATLFPKYREK-----YLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPY 95
Query: 62 IIIKARDMIKLLSRSV 77
+++KARDMIKLL+R V
Sbjct: 96 VLLKARDMIKLLARGV 111
>gi|363747734|ref|XP_003644085.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887717|gb|AET37268.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
Length = 336
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 169/245 (68%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H + EL+++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 REAYLKSTWNDVTRALDKHHLACELNLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+DD++CD+IKIGN NK RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILEDDVACDVIKIGNFSSNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL +VRR+VED
Sbjct: 169 NTVSAMGPYK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKRELAK P+L +++W RFLP FK + ++ RK PKK K K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKRELAKKPELADQDWSRFLPMFKKRNIA-RKKPKKIKEKKVYTP 248
Query: 323 FPPPQ 327
FPP Q
Sbjct: 249 FPPAQ 253
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK EDN YLK W V AL+ H + EL+++EGS
Sbjct: 20 KIEEFKPEDNASGLPFAEESSFMTLFPKYREAYLKSTWNDVTRALDKHHLACELNLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|171683573|ref|XP_001906729.1| hypothetical protein [Podospora anserina S mat+]
gi|170941746|emb|CAP67400.1| unnamed protein product [Podospora anserina S mat+]
Length = 413
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/253 (52%), Positives = 169/253 (66%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WPLV +LE + I A LD+IEGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 140 RERYLKDSWPLVTKSLEKYGIDAVLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSV 199
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI ++V+NK+RFVKRRQR++G NG TLK++ELLT Y+LV G
Sbjct: 200 PAPQAIKILEDGMACDIIKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHG 259
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL +VRR+VED
Sbjct: 260 NTVSVMGPFK---------------------------------------GLKEVRRVVED 280
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK--KRKTKSEY 320
TM+N+HPIY IK LMIKRELAKDP L E+W R+LPNFK +TLSKR P K+K Y
Sbjct: 281 TMQNVHPIYLIKELMIKRELAKDPALAQEDWSRYLPNFKKRTLSKRHKPHVVTDKSKKTY 340
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 341 TPFPPAPEKSKVD 353
>gi|393215379|gb|EJD00870.1| ribosomal RNA assembly protein mis3 [Fomitiporia mediterranea
MF3/22]
Length = 393
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 166/271 (61%), Gaps = 65/271 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V ALE H I LD+I GSM V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 60 REKYLREVWSAVTKALESHGIACTLDLIHGSMAVRTTRKTFDPYIILKARDMIKLLARGV 119
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L DD++CDIIKIG LV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 120 ALGQAVKILNDDMACDIIKIGGLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 179
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP +K L +VRRIV D
Sbjct: 180 NTVSAMGP---------------------------------------YKSLKEVRRIVLD 200
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-----------SKRKMP 311
M+NIHPIY IK LMIKRELAKDPKL NE+W+RFLP F+ + L + R
Sbjct: 201 CMRNIHPIYRIKELMIKRELAKDPKLANESWDRFLPKFRKRHLKTSEKTARKNEAHRSKD 260
Query: 312 KKRKT---------------KSEYTPFPPPQ 327
+ RK K YTPFPPPQ
Sbjct: 261 EARKEAGLDVDGSTTANIPKKKVYTPFPPPQ 291
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V ALE H I LD+I GSM V TTRKT+DPY
Sbjct: 49 ESSFATLFPKYREK-----YLREVWSAVTKALESHGIACTLDLIHGSMAVRTTRKTFDPY 103
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDMIKLL+R V
Sbjct: 104 IILKARDMIKLLARGV 119
>gi|440462064|gb|ELQ32475.1| hypothetical protein OOU_Y34scaffold01139g1, partial [Magnaporthe
oryzae Y34]
Length = 251
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/228 (56%), Positives = 157/228 (68%), Gaps = 39/228 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W V +AL+ H I LD++EGSMTV TTRK +DPYII+KARDMI+LLSRSV
Sbjct: 28 RERYLKEVWGHVTSALDKHGIACTLDLVEGSMTVKTTRKAYDPYIILKARDMIRLLSRSV 87
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+D I CD+IKIGNL++NK+RFVKRRQR+IGPNG TLK+IELLT CY+LVQG
Sbjct: 88 PFPQAVKILEDGIECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQG 147
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G P K L +VRRIV D
Sbjct: 148 NTVSAMG---------------------------------------PFKSLKEVRRIVID 168
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKM 310
+KN+HPIY+IK LMIKRELAKDPKL ENWERFLP FK + + +M
Sbjct: 169 CLKNVHPIYHIKELMIKRELAKDPKLAEENWERFLPKFKKRNMLVDRM 216
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P++++ YLKE W V +AL+ H I LD++EGSMTV TTRK +DPY
Sbjct: 17 ESSFATLFPKYRER-----YLKEVWGHVTSALDKHGIACTLDLVEGSMTVKTTRKAYDPY 71
Query: 62 IIIKARDMIKLLSRSVPY 79
II+KARDMI+LLSRSVP+
Sbjct: 72 IILKARDMIRLLSRSVPF 89
>gi|336258379|ref|XP_003344005.1| 90S preribosome/SSU processome component KRR1 [Sordaria macrospora
k-hell]
gi|380087230|emb|CCC14406.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 323
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/253 (50%), Positives = 169/253 (66%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL++ WPL+ AL+ I A LD++EGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 47 RERYLRDSWPLITKALDKQGITAVLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSV 106
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDIIKI ++V+NK+RFVKRRQR++G NG TLK++ELLT Y+LV G
Sbjct: 107 PAPQAIKILEDGMACDIIKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHG 166
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL +VRR+VED
Sbjct: 167 NTVSVMGPFK---------------------------------------GLKEVRRVVED 187
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPK--KRKTKSEY 320
TM N+HPIY IK LMIKRELAKDP L +E+W R+LPNFK +TLSKR++P K K Y
Sbjct: 188 TMNNVHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRVPHVVSDKAKKNY 247
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 248 TPFPPAPEKSKVD 260
>gi|145348735|ref|XP_001418799.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579029|gb|ABO97092.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/258 (52%), Positives = 171/258 (66%), Gaps = 41/258 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S +V + +E+YL+E WP V AL+ + EL+++EGSMTV TTRKT+DPYII+KARD
Sbjct: 77 SFAVLFPKYREKYLRETWPSVTKALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIMKARD 136
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLLSRSVP QA++VL+D+ +CD+IKIG +V+NK+RFVKRRQRLIGPNG TLK+IE+L
Sbjct: 137 LIKLLSRSVPAPQALKVLEDETNCDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEML 196
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TV+ +G K GL
Sbjct: 197 TGCYVLVQGNTVSVMGGWK---------------------------------------GL 217
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
VR+IVED MKN HPIY+IK LMIKREL KDP+L ++W+RFLP FK K + +RK P K
Sbjct: 218 KMVRKIVEDAMKNTHPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNV-QRKKPAK 276
Query: 314 RKTKSEYTPFPPPQPESE 331
K E FPP QP S+
Sbjct: 277 -IGKKERAVFPPTQPMSK 293
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++++ P+++ +YL+E WP V AL+ + EL+++EGSMTV TTRKT+DPY
Sbjct: 75 ESSFAVLFPKYR-----EKYLRETWPSVTKALKEQGVSCELNLVEGSMTVRTTRKTFDPY 129
Query: 62 IIIKARDMIKLLSRSVP 78
II+KARD+IKLLSRSVP
Sbjct: 130 IIMKARDLIKLLSRSVP 146
>gi|336386044|gb|EGO27190.1| hypothetical protein SERLADRAFT_381537 [Serpula lacrymans var.
lacrymans S7.9]
Length = 386
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 134/269 (49%), Positives = 167/269 (62%), Gaps = 63/269 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V AL+ H I LD++ GSM+V TTRKT+DPY+++KARDMIKLL+R V
Sbjct: 57 REKYLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGV 116
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV+VLQDD++CDIIKIG+LV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 117 AISQAVKVLQDDVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 176
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 177 STVSVMGP---------------------------------------YKSLKEVRRIVLD 197
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-SKRKMPKK-------- 313
MKNIHPIY IK LMI+RELAKDPKL E+W+RFLP F+ + L + K KK
Sbjct: 198 CMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKTAKKNEKQAVKD 257
Query: 314 ---------------RKTKSEYTPFPPPQ 327
+ K YTPFPPPQ
Sbjct: 258 EARKAAGLDPAQKTDKTAKKVYTPFPPPQ 286
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V AL+ H I LD++ GSM+V TTRKT+DPY
Sbjct: 46 ESSFATLFPKYREK-----YLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPY 100
Query: 62 IIIKARDMIKLLSRSV 77
+++KARDMIKLL+R V
Sbjct: 101 VLLKARDMIKLLARGV 116
>gi|66813724|ref|XP_641041.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
gi|74855697|sp|Q54UU6.1|KRR1_DICDI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|60469063|gb|EAL67060.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
Length = 374
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 166/245 (67%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W LV+N L H I+ +LD+IEGSMTV TT+K WDP I+KARD+IKLLSRSV
Sbjct: 68 REKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAILKARDLIKLLSRSV 127
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+E A +VL DD +CDIIKIG V+NK+RFVKRRQRL+GP+G TLK+IELLT CY+LVQG
Sbjct: 128 PFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIELLTKCYVLVQG 187
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+++GP G L+QVR+IVED
Sbjct: 188 NTVSSIGPWNG---------------------------------------LVQVRKIVED 208
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
+KNIHPIYNIK LMIKREL KD LKNENWER+LP FK +K+K +K+K + P
Sbjct: 209 CLKNIHPIYNIKELMIKRELEKDETLKNENWERYLPQFKKTNQNKKKKVQKKKKDRDAAP 268
Query: 323 FPPPQ 327
F PPQ
Sbjct: 269 FAPPQ 273
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 50/62 (80%)
Query: 19 HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
+YL+E W LV+N L H I+ +LD+IEGSMTV TT+K WDP I+KARD+IKLLSRSVP
Sbjct: 69 EKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAILKARDLIKLLSRSVP 128
Query: 79 YE 80
+E
Sbjct: 129 FE 130
>gi|392568645|gb|EIW61819.1| hypothetical protein TRAVEDRAFT_143946 [Trametes versicolor
FP-101664 SS1]
Length = 393
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 167/271 (61%), Gaps = 65/271 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V AL+ H I LD+I GSM+V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 62 REKYLREVWSAVTQALDTHGISCTLDLIHGSMSVRTTRKTYDPYIILKARDMIKLLARGV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV+++ DDI+CDIIKIGN+V+NK+RF+KRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 122 AIGQAVKIMSDDIACDIIKIGNVVRNKERFIKRRQRIIGPDGSTLKAIELLTQCYVLVQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRRIV D
Sbjct: 182 NTVSVMGPYK---------------------------------------GLKEVRRIVLD 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-SKRKMPKKRKTKSE-- 319
MKNIHPIY IK LMIKRELAKDP+L E+W+RFLP F+ + L + K KK + E
Sbjct: 203 CMKNIHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKTAKKNERIQEKD 262
Query: 320 -----------------------YTPFPPPQ 327
YTPFPPPQ
Sbjct: 263 ESRKAAGLPTVEEAKKEKKEKKVYTPFPPPQ 293
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 20/95 (21%)
Query: 1 MENAWSMKIPEFKKEDNP------------------HEYLKECWPLVKNALELHFIKAEL 42
++++W KI +FK EDN +YL+E W V AL+ H I L
Sbjct: 29 IDHSW--KIDQFKPEDNKAGPFTEESSFATLFPKYREKYLREVWSAVTQALDTHGISCTL 86
Query: 43 DVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 77
D+I GSM+V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 87 DLIHGSMSVRTTRKTYDPYIILKARDMIKLLARGV 121
>gi|320583574|gb|EFW97787.1| ribosomal RNA assembly protein mis3 [Ogataea parapolymorpha DL-1]
Length = 356
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 167/245 (68%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+EEYL++ W V AL H I LD+IEGSMTV TTRKT+DP I+ ARD+IKLL+RSV
Sbjct: 49 REEYLRQIWGDVTKALNKHHIACTLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD +C+IIKIGN+V NK+RF+KRRQRLIGPNG TLK++ELLT CYMLVQG
Sbjct: 109 PFPQAVKILQDDTACEIIKIGNIVANKERFIKRRQRLIGPNGNTLKALELLTGCYMLVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GPHK GL +RR++ED
Sbjct: 169 NTVAVMGPHK---------------------------------------GLKVLRRVIED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHPIY+IK LMIKRELAK P+L E+W RFLPNFK + ++++K KK + K EYTP
Sbjct: 190 CMHNIHPIYHIKELMIKRELAKRPELAEEDWSRFLPNFKKRNVARKKP-KKVREKKEYTP 248
Query: 323 FPPPQ 327
FPP Q
Sbjct: 249 FPPVQ 253
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 56/96 (58%), Gaps = 21/96 (21%)
Query: 3 NAWSMKIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELD 43
+ W+ IPEFK EDN EYL++ W V AL H I LD
Sbjct: 17 DKWA--IPEFKPEDNASGSPFLEESSFMTLFPKYREEYLRQIWGDVTKALNKHHIACTLD 74
Query: 44 VIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+IEGSMTV TTRKT+DP I+ ARD+IKLL+RSVP+
Sbjct: 75 LIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPF 110
>gi|198418943|ref|XP_002125952.1| PREDICTED: similar to KRR1 protein [Ciona intestinalis]
Length = 333
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/223 (53%), Positives = 156/223 (69%), Gaps = 39/223 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ECW +VKN L + I+ LD+IEGSMTV T+R+TWDPY I+ ARD+IK+L+RSV
Sbjct: 42 REKYLQECWTIVKNKLSEYKIEGILDLIEGSMTVKTSRRTWDPYAILNARDLIKMLARSV 101
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P EQAVR+ +D+ CDIIKIG++V+N++RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 102 PIEQAVRIFEDNTFCDIIKIGSMVRNRERFVKRRQRLVGPNGATLKALELLTGCYILVQG 161
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
T LG H GL ++ R+++ D
Sbjct: 162 NTTTVLGSHAGLKEA---------------------------------------RKVILD 182
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
TMKNIHP+YNIK+LMIKREL+KDP LKNE+W+RFLP FK K +
Sbjct: 183 TMKNIHPVYNIKSLMIKRELSKDPNLKNESWDRFLPKFKRKNV 225
>gi|414880761|tpg|DAA57892.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 391
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 136/260 (52%), Positives = 179/260 (68%), Gaps = 40/260 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP+VK AL+ + I EL+++EGSMTV TTRKT DP+ I
Sbjct: 53 MLEVSSFSTLFPQYREKYLQEAWPVVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFAI 112
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKAR++IKLLSRSVP QA+++L D+++CDIIKIG LV+NK+RFVKRR+RL+GPN TLK
Sbjct: 113 IKARELIKLLSRSVPAPQAIKILDDEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLK 172
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IE+LT CY+LVQG TVAA+G ++G
Sbjct: 173 AIEILTGCYILVQGNTVAAMGNYRG----------------------------------- 197
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
+GL QVRRIVED MKN+ HP+Y+IK L+IKRELAK+P L NENW+RFLP K K +
Sbjct: 198 --RGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALANENWDRFLP--KFKKKNV 253
Query: 308 RKMPKKRKTKSEYTPFPPPQ 327
++ + K K YTPFPPPQ
Sbjct: 254 KQKKPQTKEKKPYTPFPPPQ 273
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WP+VK AL+ + I EL+++EGSMTV TTRKT DP+
Sbjct: 57 SSFSTLFPQYR-----EKYLQEAWPVVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFA 111
Query: 63 IIKARDMIKLLSRSVP 78
IIKAR++IKLLSRSVP
Sbjct: 112 IIKARELIKLLSRSVP 127
>gi|430812870|emb|CCJ29739.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 329
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 132/251 (52%), Positives = 173/251 (68%), Gaps = 41/251 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V L + I LD+I GSMTV TTRKT DP I+KARD+IKLL+RSV
Sbjct: 65 REKYLQEIWPHVTQNLNNYGISCVLDLIVGSMTVKTTRKTKDPCSILKARDLIKLLARSV 124
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA++++ D ++CDIIKIG ++NK+RF+KRRQR++GPNG TLK++ELLT CY++VQG
Sbjct: 125 PFPQAIKIMDDSMACDIIKIGGFLRNKERFIKRRQRILGPNGSTLKALELLTQCYIMVQG 184
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VR+IVED
Sbjct: 185 NTVSVMGNYK---------------------------------------GLKEVRKIVED 205
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY+IK LMIKRELAKDP LKNE+W+RFLP+FK + +++RK PK+ K K EYTP
Sbjct: 206 CMKNIHPIYHIKELMIKRELAKDPVLKNESWDRFLPHFKKRNVARRK-PKQIKIK-EYTP 263
Query: 323 FPPPQPESEAN 333
FPPPQ S+ +
Sbjct: 264 FPPPQQPSKID 274
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E WP V L + I LD+I GSMTV TTRKT DP
Sbjct: 54 ESSFATLFPKYREK-----YLQEIWPHVTQNLNNYGISCVLDLIVGSMTVKTTRKTKDPC 108
Query: 62 IIIKARDMIKLLSRSVPY 79
I+KARD+IKLL+RSVP+
Sbjct: 109 SILKARDLIKLLARSVPF 126
>gi|307106027|gb|EFN54274.1| hypothetical protein CHLNCDRAFT_58322 [Chlorella variabilis]
Length = 424
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 45/239 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V AL+ I EL+++EGSMTV TTRKT+DP+II+KARD+IKLL+RS
Sbjct: 71 REKYLREVWPAVTKALKEQGIACELNLVEGSMTVRTTRKTYDPFIILKARDLIKLLARS- 129
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
A++VL+D++ CD+IKIG +V+NK++FVKRRQRLIGPNG TLK++ELLT CY+LVQG
Sbjct: 130 ----ALKVLEDEVQCDVIKIGGIVRNKEKFVKRRQRLIGPNGATLKALELLTGCYILVQG 185
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G +K GL QVRRIVED
Sbjct: 186 NTVSAMGDYK---------------------------------------GLKQVRRIVED 206
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYT 321
++N+HPIY+IK LMIKRELAKDP L ENWERFLPNFK K + +RK PKK + + +YT
Sbjct: 207 CVRNVHPIYHIKTLMIKRELAKDPALAEENWERFLPNFKKKNV-QRKKPKKVRERKDYT 264
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 17/87 (19%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
KI FKKEDNP +YL+E WP V AL+ I EL+++EGSMT
Sbjct: 44 KIEPFKKEDNPSGLLEESSFATLFPKYREKYLREVWPAVTKALKEQGIACELNLVEGSMT 103
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSV 77
V TTRKT+DP+II+KARD+IKLL+RS
Sbjct: 104 VRTTRKTYDPFIILKARDLIKLLARSA 130
>gi|395330640|gb|EJF63023.1| hypothetical protein DICSQDRAFT_56643 [Dichomitus squalens LYAD-421
SS1]
Length = 386
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 165/271 (60%), Gaps = 65/271 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V AL+ H I LD+I GSM V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 61 REKYLREVWSAVTQALDPHGIACTLDLIHGSMAVRTTRKTYDPYIILKARDMIKLLARGV 120
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L DD++CDIIKIGN+V+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 121 AVAQAVKILNDDVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 180
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV +GP+K GL +VRRIV D
Sbjct: 181 NTVGVMGPYK---------------------------------------GLKEVRRIVLD 201
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-SKRKMPKKRKTKSE-- 319
MKNIHPIY IK LMIKRELAKDP+L E+W+RFLP F+ + L + K +K + E
Sbjct: 202 CMKNIHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKTARKNERVQEKN 261
Query: 320 -----------------------YTPFPPPQ 327
YTPFPPPQ
Sbjct: 262 EARKAAGLPTLEEAKKERKEKKVYTPFPPPQ 292
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V AL+ H I LD+I GSM V TTRKT+DPY
Sbjct: 50 ESSFATLFPKYREK-----YLREVWSAVTQALDPHGIACTLDLIHGSMAVRTTRKTYDPY 104
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDMIKLL+R V
Sbjct: 105 IILKARDMIKLLARGV 120
>gi|46123651|ref|XP_386379.1| hypothetical protein FG06203.1 [Gibberella zeae PH-1]
Length = 426
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 132/253 (52%), Positives = 168/253 (66%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE WPL+ ALE I LD+IEGSM V T+ +T DP I+KARD+IKLL+RSV
Sbjct: 154 RESYLKEVWPLITRALEKLGIACSLDLIEGSMVVKTSLRTHDPSSILKARDLIKLLARSV 213
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D I+CDIIKI N V +K+RFVKRRQRL+GPNG TLK++ELLT Y+LV G
Sbjct: 214 PAPQAIKILEDGIACDIIKIRNQVASKERFVKRRQRLLGPNGTTLKALELLTKTYILVHG 273
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL ++RR+VED
Sbjct: 274 NTVSVMGPYK---------------------------------------GLKEIRRVVED 294
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK MIK+ELAKDP+L NE+W+RFLPNFK KTLS+R++P K K K Y
Sbjct: 295 CMANIHPIYHIKEAMIKQELAKDPELANESWDRFLPNFKRKTLSQRRVPHKVNDKAKKVY 354
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 355 TPFPPAPEKSKVD 367
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P++++ YLKE WPL+ ALE I LD+IEGSM V T+ +T DP
Sbjct: 143 ESSFATLFPKYRES-----YLKEVWPLITRALEKLGIACSLDLIEGSMVVKTSLRTHDPS 197
Query: 62 IIIKARDMIKLLSRSVP 78
I+KARD+IKLL+RSVP
Sbjct: 198 SILKARDLIKLLARSVP 214
>gi|319411597|emb|CBQ73641.1| probable KRR1-required for 40S ribosome biogenesis [Sporisorium
reilianum SRZ2]
Length = 354
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 167/262 (63%), Gaps = 50/262 (19%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W V +AL+ H I LD++EGSMTV TTRKT+DPY I+KARDMI+LLSRSV
Sbjct: 62 RERYLKEVWGHVTSALDKHGIACTLDLVEGSMTVKTTRKTYDPYSILKARDMIRLLSRSV 121
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+D + CD+IKIGNL++NK+RFVKRRQR+IGPNG TLK+IELLTNCY+LVQG
Sbjct: 122 PFPQAVKILEDGVECDVIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQG 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A +G K L +VRRIV D
Sbjct: 182 NTVSA---------------------------------------MGQFKNLKEVRRIVID 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFL-----------PNFKSKTLSKRKMP 311
+KNIHPIY+IK LMIKRELAKDPKL ENW+RFL P + +
Sbjct: 203 CLKNIHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKQNQKKKPTASTSEAAPVPAK 262
Query: 312 KKRKTKSEYTPFPPPQPESEAN 333
K++ YTPFPPPQ S+ +
Sbjct: 263 KQKPKPKTYTPFPPPQQPSKID 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P++++ YLKE W V +AL+ H I LD++EGSMTV TTRKT+DPY
Sbjct: 51 ESSFATLFPKYRER-----YLKEVWGHVTSALDKHGIACTLDLVEGSMTVKTTRKTYDPY 105
Query: 62 IIIKARDMIKLLSRSVPY 79
I+KARDMI+LLSRSVP+
Sbjct: 106 SILKARDMIRLLSRSVPF 123
>gi|396463320|ref|XP_003836271.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
gi|312212823|emb|CBX92906.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
Length = 341
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK W + +AL I EL+++EGSMTV+TT+KTWDP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLKGSWKFITSALAKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L DD++ DIIKI NLV NK RFVKRRQR++GPNG TLK++ELLT Y+LVQG
Sbjct: 108 PAPQAVKILDDDVAMDIIKIRNLVGNKDRFVKRRQRILGPNGSTLKALELLTETYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL VRRI+ED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKTVRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM NIHPIY IK LMIK+ELAKDP+L NE+W+RFLPNFK ++LSKR++P K K+K Y
Sbjct: 189 TMHNIHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVTDKSKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+ +S P+++++ YLK W + +AL I EL+++EGSMTV+TT+KTWDP
Sbjct: 37 ESRFSTLFPKYREQ-----YLKGSWKFITSALAKQGIGCELNLVEGSMTVWTTQKTWDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|50422687|ref|XP_459920.1| 90S preribosome/SSU processome component KRR1 [Debaryomyces
hansenii CBS767]
gi|49655588|emb|CAG88162.1| DEHA2E14146p [Debaryomyces hansenii CBS767]
Length = 360
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/247 (52%), Positives = 169/247 (68%), Gaps = 41/247 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V L+ +FI +LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 REQYLRTIWSDVTRNLDKYFIDCQLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDDI+CD+IKIGN V NK RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDIACDVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
M N+HPIY IK LMIK+ELAK+P+L +E+W RFLP F+ + ++++K K + K + Y
Sbjct: 190 CMNNVHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFRKRNVARKKSKKIGEKKEKKVY 249
Query: 321 TPFPPPQ 327
TPFPP Q
Sbjct: 250 TPFPPAQ 256
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 58/96 (60%), Gaps = 21/96 (21%)
Query: 3 NAWSMKIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELD 43
+ WS I EFK EDN +YL+ W V L+ +FI +LD
Sbjct: 17 DKWS--IEEFKPEDNASGLHFTEESSFMTLFPKYREQYLRTIWSDVTRNLDKYFIDCQLD 74
Query: 44 VIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
++EGSMTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 75 LVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPF 110
>gi|62202255|gb|AAH92872.1| LOC553525 protein, partial [Danio rerio]
Length = 260
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 161/220 (73%), Gaps = 39/220 (17%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
MTV TT+KT+DPY II+ARD+IKLL+RSVP+EQAVR+L DD++CDIIKIG LV+N++RFV
Sbjct: 1 MTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERFV 60
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRRQRLIG P G TLK++ELLT
Sbjct: 61 KRRQRLIG---------------------------------------PKGSTLKALELLT 81
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENW 293
NCY++VQG TV+ALGP GL +VR++V DTMKNIHPIYNIK LMIKRELA DP+L+ ++W
Sbjct: 82 NCYVMVQGNTVSALGPFNGLKEVRKVVPDTMKNIHPIYNIKTLMIKRELANDPELRTQSW 141
Query: 294 ERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
RFLPNF+ K+LSKRK PKK++ K EYTPFPPPQPES+ +
Sbjct: 142 GRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPESKID 181
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
MTV TT+KT+DPY II+ARD+IKLL+RSVP+E
Sbjct: 1 MTVNTTKKTFDPYSIIRARDLIKLLARSVPFE 32
>gi|156847828|ref|XP_001646797.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156117478|gb|EDO18939.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 338
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/245 (53%), Positives = 167/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ I LD++EGSMTV TTRKT+DPY I+KARD+IKLL+RSV
Sbjct: 49 REIYLKSVWNDVTKALDKRHIACTLDLVEGSMTVKTTRKTFDPYAILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA+++L+DD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAIKILEDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL ++RR+VED
Sbjct: 169 NTVSCMGPFK---------------------------------------GLKEIRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKRELAK P+L +E+W RFLP FK + ++++K K +K K YTP
Sbjct: 190 CMKNVHPIYHIKELMIKRELAKRPELADEDWSRFLPMFKKRNVARKKAAKPKKEKKVYTP 249
Query: 323 FPPPQ 327
FPP Q
Sbjct: 250 FPPAQ 254
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 53/91 (58%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNPHE-------------------YLKECWPLVKNALELHFIKAELDVIEGS 48
K+ EFK EDN YLK W V AL+ I LD++EGS
Sbjct: 20 KVEEFKPEDNASGLPFAEESSFMTLFPKYREIYLKSVWNDVTKALDKRHIACTLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DPY I+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTFDPYAILKARDLIKLLARSVPF 110
>gi|392593127|gb|EIW82453.1| ribosomal RNA assembly protein mis3, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 355
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 168/271 (61%), Gaps = 65/271 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V ALE H I LD++ GSM+V TTRKT+DPY+I+KARD++KLL+R V
Sbjct: 33 REKYLREVWSAVTRALESHGIACTLDLVHGSMSVRTTRKTFDPYVILKARDLVKLLARGV 92
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV+VLQDD++CDIIKIG+LV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 93 AINQAVKVLQDDVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 152
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 153 STVSVMGP---------------------------------------YKSLKEVRRIVLD 173
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-----SKRKMPKK---- 313
MKNIHPIY IK LMI+RELAKDPKL E+W+RFLP F+ + L + RK K
Sbjct: 174 CMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKTARKNEAKVAKE 233
Query: 314 --RK---------------TKSEYTPFPPPQ 327
RK +K YTPFPP Q
Sbjct: 234 EARKAAGLDPVESSRKDGPSKKTYTPFPPAQ 264
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V ALE H I LD++ GSM+V TTRKT+DPY
Sbjct: 22 ESSFATLFPKYREK-----YLREVWSAVTRALESHGIACTLDLVHGSMSVRTTRKTFDPY 76
Query: 62 IIIKARDMIKLLSRSV 77
+I+KARD++KLL+R V
Sbjct: 77 VILKARDLVKLLARGV 92
>gi|254565757|ref|XP_002489989.1| 90S preribosome/SSU processome component KRR1 [Komagataella
pastoris GS115]
gi|238029785|emb|CAY67708.1| Essential nucleolar protein required for the synthesis of 18S rRNA
[Komagataella pastoris GS115]
gi|328350400|emb|CCA36800.1| Ribosomal RNA assembly protein KRR1 [Komagataella pastoris CBS
7435]
Length = 314
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/245 (54%), Positives = 165/245 (67%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK+ W V AL H I EL+++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 48 REQYLKQAWGDVAKALNAHHIGCELNLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++LQDDISCD+IKIG + NK+RF KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 108 PLPQAVKILQDDISCDVIKIGGNLDNKERFTKRRQRLVGPNGNTLKALELLTGCYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL +VRR+VED
Sbjct: 168 NTVSVMGPFK---------------------------------------GLKEVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKRELAK P+L NE+W RFLP F+ + ++ RK +K K YTP
Sbjct: 189 CMKNVHPIYHIKELMIKRELAKKPELVNEDWSRFLPMFRKRNVA-RKNKISKKEKKPYTP 247
Query: 323 FPPPQ 327
FPP Q
Sbjct: 248 FPPQQ 252
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 47/59 (79%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
+YLK+ W V AL H I EL+++EGSMTV TTRKT+DP II+KARD+IKLL+RSVP
Sbjct: 50 QYLKQAWGDVAKALNAHHIGCELNLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVP 108
>gi|342320728|gb|EGU12667.1| Hypothetical Protein RTG_01217 [Rhodotorula glutinis ATCC 204091]
Length = 394
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/272 (51%), Positives = 170/272 (62%), Gaps = 66/272 (24%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E W V ALE H I A LD++EGSMTV TTRKT DPYII+KARDMIKLL+RSV
Sbjct: 85 RETYLREIWGHVTAALEKHGIVATLDLVEGSMTVKTTRKTHDPYIILKARDMIKLLARSV 144
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAVR+L+D + CDIIKIGN+++N +RFVKRRQR++GP G TLK+IELLT CY+LVQG
Sbjct: 145 PFPQAVRILEDGMDCDIIKIGNIIRNTERFVKRRQRILGPGGSTLKAIELLTQCYVLVQG 204
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+G HK GL +VR+IV D
Sbjct: 205 NTVAAMGGHK---------------------------------------GLKEVRKIVID 225
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP------------------------ 298
MKNIHPIY+IK LMIKRELAKDPKL +ENW+RFLP
Sbjct: 226 CMKNIHPIYHIKELMIKRELAKDPKLASENWDRFLPKFRRRREKKRGPPAAEGSGVNGIP 285
Query: 299 -NFKSKTLSKRKMPKKRKTKSE--YTPFPPPQ 327
N + T ++ + P K++ K + YTPFPP Q
Sbjct: 286 VNGDASTSAEAQPPAKKQKKEKKPYTPFPPAQ 317
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
YL+E W V ALE H I A LD++EGSMTV TTRKT DPYII+KARDMIKLL+RSVP+
Sbjct: 88 YLREIWGHVTAALEKHGIVATLDLVEGSMTVKTTRKTHDPYIILKARDMIKLLARSVPF 146
>gi|300175390|emb|CBK20701.2| unnamed protein product [Blastocystis hominis]
Length = 327
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 159/243 (65%), Gaps = 40/243 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V L+ H I ELD IEG+MTV TTRKT DPYII+KARD+IKLL+RSV
Sbjct: 66 REQYLREVWPAVTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSV 125
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA+++L D++ CDIIKIG V K RF+KRRQRL+GP G TLK+IELLT+CYMLVQG
Sbjct: 126 PFNQAIKILDDNMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQG 185
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +G ++GL VRRI+ D
Sbjct: 186 NTVAVMG---------------------------------------SYQGLKTVRRIIID 206
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIY IK LMIKRELAKDP LKNENW+RFLP FK + S + K + +YTP
Sbjct: 207 CMKNIHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKSSKTK-KVVVKEKKYTP 265
Query: 323 FPP 325
FPP
Sbjct: 266 FPP 268
>gi|357136153|ref|XP_003569670.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 393
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/260 (52%), Positives = 177/260 (68%), Gaps = 42/260 (16%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP VK AL+ I EL+++EGSMTV TTRKT DPYII
Sbjct: 58 MLEVTSFSTLFPQYREKYLQEAWPTVKGALKEFGITCELNLVEGSMTVSTTRKTRDPYII 117
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA++VL D+++CDI+KIG++++NK+RFVKRR+RL+GPN TLK
Sbjct: 118 VKARDLIKLLSRSVPAPQAIKVLNDEMNCDIVKIGSIIRNKERFVKRRERLLGPNLSTLK 177
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IE+LT CY+LVQG TVAA+G K
Sbjct: 178 AIEILTGCYILVQGNTVAAMGSFK------------------------------------ 201
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
GL QVRRIVED +KNI HP+Y+IK L+IKRELAK+P L E+W+RFLPNFK K + +
Sbjct: 202 ---GLKQVRRIVEDCIKNIKHPVYHIKELLIKRELAKNPALATESWDRFLPNFKKKNVKQ 258
Query: 308 RKMPKKRKTKSEYTPFPPPQ 327
+K K K YTPFPPPQ
Sbjct: 259 KK--PNTKEKKPYTPFPPPQ 276
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 4 AWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 63
++S P+++ +YL+E WP VK AL+ I EL+++EGSMTV TTRKT DPYII
Sbjct: 63 SFSTLFPQYR-----EKYLQEAWPTVKGALKEFGITCELNLVEGSMTVSTTRKTRDPYII 117
Query: 64 IKARDMIKLLSRSVP 78
+KARD+IKLLSRSVP
Sbjct: 118 VKARDLIKLLSRSVP 132
>gi|393246490|gb|EJD53999.1| hypothetical protein AURDEDRAFT_110662 [Auricularia delicata
TFB-10046 SS5]
Length = 390
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/273 (49%), Positives = 166/273 (60%), Gaps = 67/273 (24%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W ALE H + LD+++GSM+V TT KT+DPY++ KARDMIKLL+R V
Sbjct: 60 REKYLREIWGTATRALEGHGVACTLDLVQGSMSVKTTPKTYDPYVLFKARDMIKLLARGV 119
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QA+RVL+D ++CDIIKIG +V+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 120 AINQALRVLEDGVACDIIKIGGMVRNKERFVKRRQRIIGPDGSTLKAIELLTECYVLVQG 179
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ LGPH K L +VRRIVED
Sbjct: 180 NTVSVLGPH---------------------------------------KKLKEVRRIVED 200
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK-RKMPKKRKTKSE-- 319
MKNIHPIY IK LMIKRELAKDPKL E+W+RFLP F+ + LS +K KKR+ +
Sbjct: 201 CMKNIHPIYRIKELMIKRELAKDPKLATESWDRFLPQFRKRHLSSAQKSAKKRELVAHKE 260
Query: 320 -------------------------YTPFPPPQ 327
YTPFPPPQ
Sbjct: 261 EVQVQAGASTSAGTEGKKEKPKKKVYTPFPPPQ 293
>gi|448086732|ref|XP_004196171.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359377593|emb|CCE85976.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 372
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/245 (50%), Positives = 169/245 (68%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL++ W + L + I +LD++EGSMTV TTRKT+DP +I+KARD+IKLL+RSV
Sbjct: 49 REQYLRQIWGDMTRELSKYHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQ+D++CD++KIGN V NK RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQEDVACDVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL VRR+VED
Sbjct: 169 STVSAMGPYK---------------------------------------GLKVVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M N+HPIY+IK LM+K+ELA +P + +E+W RFLP FK + ++++K+ + +K K YTP
Sbjct: 190 CMNNVHPIYHIKELMLKQELASNPDIAHEDWSRFLPQFKKRNVARKKLKQSKKEKKVYTP 249
Query: 323 FPPPQ 327
FPPPQ
Sbjct: 250 FPPPQ 254
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 19/88 (21%)
Query: 11 EFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
EFK+EDN +YL++ W + L + I +LD++EGSMTV
Sbjct: 23 EFKEEDNASGLPFAEESTFMTLFPKYREQYLRQIWGDMTRELSKYHIDCQLDLVEGSMTV 82
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TTRKT+DP +I+KARD+IKLL+RSVP+
Sbjct: 83 KTTRKTYDPAMILKARDLIKLLARSVPF 110
>gi|169607927|ref|XP_001797383.1| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
gi|160701520|gb|EAT85679.2| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
Length = 509
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 173/253 (68%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLK W + AL H + EL+++EGSMTV+TT+KT+DP I+ ARD+IKLL+RSV
Sbjct: 48 REQYLKGSWKFITQALAKHGVGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D+++ DIIKI NLV NK+RFVKRRQR++GPNG TLK++ELLT Y+LVQG
Sbjct: 108 PAPQAVKILDDEVAMDIIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTETYLLVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVAA+GP K GL VRRI+ED
Sbjct: 168 NTVAAMGPFK---------------------------------------GLKTVRRIIED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
TM NIHPIY IK LMIK+ELAKDP+L NE+W+RFLPNFK ++LSKR++P K K K Y
Sbjct: 189 TMHNIHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVTDKAKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPPPQ +S+ +
Sbjct: 249 TPFPPPQEKSKVD 261
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+ +S P+++++ YLK W + AL H + EL+++EGSMTV+TT+KT+DP
Sbjct: 37 ESRFSTLFPKYREQ-----YLKGSWKFITQALAKHGVGCELNLVEGSMTVWTTQKTYDPA 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+ ARD+IKLL+RSVP
Sbjct: 92 AILNARDLIKLLARSVP 108
>gi|426200426|gb|EKV50350.1| hypothetical protein AGABI2DRAFT_190677 [Agaricus bisporus var.
bisporus H97]
Length = 392
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 167/275 (60%), Gaps = 69/275 (25%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V ALE H I LD++ GSM+V TTRKT+DPYII+KARDM+KLL+R V
Sbjct: 58 REKYLREVWSAVTRALETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGV 117
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L+DD++CDIIKIGNLV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 118 AVNQAVKILEDDMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 177
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP +K L +VRRIV D
Sbjct: 178 STVSAMGP---------------------------------------YKSLKEVRRIVLD 198
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL----------------- 305
MKNIHPIY IK LMI++ELAKDPKL +E W+RFLP F+ + L
Sbjct: 199 CMKNIHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKTAKKNERLEARA 258
Query: 306 -------------SKRKMPKKRKTKSEYTPFPPPQ 327
+K +K K K YTPFPP Q
Sbjct: 259 EARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQ 293
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E W V ALE H I LD++ GSM+V TTRKT+DPY
Sbjct: 47 ESSFATLFPKYR-----EKYLREVWSAVTRALETHGIACTLDLLNGSMSVRTTRKTFDPY 101
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDM+KLL+R V
Sbjct: 102 IILKARDMVKLLARGV 117
>gi|449550042|gb|EMD41007.1| hypothetical protein CERSUDRAFT_103362 [Ceriporiopsis subvermispora
B]
Length = 395
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/271 (48%), Positives = 165/271 (60%), Gaps = 65/271 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V ALE H I LD+I GSM+V TTRKT+DPYII+KARDM+KLL+R V
Sbjct: 61 REKYLREVWSAVTKALESHGIACTLDLIHGSMSVRTTRKTYDPYIILKARDMVKLLARGV 120
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L D ++CDIIKIGN+V+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 121 AIGQAVKILDDTVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 180
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+K GL +VRRIV D
Sbjct: 181 STVSVMGPYK---------------------------------------GLKEVRRIVLD 201
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK--------------- 307
MKNIHPIY IK LMIKRELAKDP+L E+W+RFLP F+ + L
Sbjct: 202 CMKNIHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKTAKKNERIQEKN 261
Query: 308 -----------RKMPKKRKTKSEYTPFPPPQ 327
++ K++ K YTPFPP Q
Sbjct: 262 EARQAAGLPTIQEAQKEKPAKKVYTPFPPAQ 292
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E W V ALE H I LD+I GSM+V TTRKT+DPY
Sbjct: 50 ESSFATLFPKYR-----EKYLREVWSAVTKALESHGIACTLDLIHGSMSVRTTRKTYDPY 104
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDM+KLL+R V
Sbjct: 105 IILKARDMVKLLARGV 120
>gi|408398153|gb|EKJ77287.1| hypothetical protein FPSE_02562 [Fusarium pseudograminearum CS3096]
Length = 320
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/253 (52%), Positives = 168/253 (66%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E LKE WPLV ALE I LD++EG+MTV T+ KT DP I+KARD+IKLL+RSV
Sbjct: 48 RESALKESWPLVTRALEKLGIACTLDLVEGAMTVKTSLKTSDPSAILKARDLIKLLARSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D I+CDIIKI NLV + Q+FVKRRQRL+G NG TLK++ELLT Y+LV G
Sbjct: 108 PAPQALKILEDGIACDIIKIRNLVGSAQKFVKRRQRLLGHNGATLKTLELLTKTYILVHG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL ++RR+VED
Sbjct: 168 NTVSAMGPYK---------------------------------------GLKEIRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
M NIHPIY+IK MIK+ELAKDPKL NE+W+RFLPNFKSK LS+R++P K K K Y
Sbjct: 189 CMVNIHPIYHIKEAMIKQELAKDPKLANESWDRFLPNFKSKALSQRRVPHKVNDKAKKVY 248
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 249 TPFPPAPEKSKVD 261
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P ++ LKE WPLV ALE I LD++EG+MTV T+ KT DP
Sbjct: 37 ESSFQVLFPRYR-----ESALKESWPLVTRALEKLGIACTLDLVEGAMTVKTSLKTSDPS 91
Query: 62 IIIKARDMIKLLSRSVP 78
I+KARD+IKLL+RSVP
Sbjct: 92 AILKARDLIKLLARSVP 108
>gi|242054199|ref|XP_002456245.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
gi|241928220|gb|EES01365.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
Length = 351
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 138/266 (51%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WPLVK AL+ + I EL+++EGSMTV TTRKT DP+II
Sbjct: 60 MLEVSSFSTLFPQYREKYLQEAWPLVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFII 119
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KAR++IKLLSRSVP QA+++L D+++CDIIKIG LV+NK+RFVKRR+RL+GPN TLK
Sbjct: 120 VKARELIKLLSRSVPAPQAIKILDDEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLK 179
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IE+LT CY+LVQG TVAA+G ++G
Sbjct: 180 AIEILTGCYILVQGNTVAAMGNYRG----------------------------------- 204
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
+GL QVRRIVED MKN+ HP+Y+IK L+IKRELAK+P L E+W+RFLP FK K + +
Sbjct: 205 --RGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALATESWDRFLPKFKKKNVKQ 262
Query: 308 RKMPKKRKTKSEYTPFPPPQPESEAN 333
+K + K K YTPFPPPQ S+ +
Sbjct: 263 KK--PQTKEKKPYTPFPPPQQPSKID 286
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WPLVK AL+ + I EL+++EGSMTV TTRKT DP+I
Sbjct: 64 SSFSTLFPQYR-----EKYLQEAWPLVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFI 118
Query: 63 IIKARDMIKLLSRSVP 78
I+KAR++IKLLSRSVP
Sbjct: 119 IVKARELIKLLSRSVP 134
>gi|170106401|ref|XP_001884412.1| 90S preribosome/SSU processome component KRR1 [Laccaria bicolor
S238N-H82]
gi|164640758|gb|EDR05022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 410
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 131/271 (48%), Positives = 163/271 (60%), Gaps = 65/271 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V AL+ H + LD++ GSM+V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 74 REKYLREVWSAVTRALDTHGVACTLDLVHGSMSVKTTRKTYDPYIILKARDMIKLLARGV 133
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L D ++CDIIKIG LV+NK+RFVKRRQR+IGP+G TLK+IELLTNCY+LVQG
Sbjct: 134 AVSQAVKILDDAVACDIIKIGTLVRNKERFVKRRQRIIGPDGSTLKAIELLTNCYVLVQG 193
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 194 STVSVMGP---------------------------------------YKSLKEVRRIVLD 214
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--- 319
MKNIHPIY IK LMI+RELAKDPKL E+W+RFLP F+ + L + K+ K E
Sbjct: 215 CMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKTAKKNEKLEGKK 274
Query: 320 -----------------------YTPFPPPQ 327
YTPFPP Q
Sbjct: 275 EAWKAAGMGAEEIAKKEKPAKKVYTPFPPAQ 305
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V AL+ H + LD++ GSM+V TTRKT+DPY
Sbjct: 63 ESSFATLFPKYREK-----YLREVWSAVTRALDTHGVACTLDLVHGSMSVKTTRKTYDPY 117
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDMIKLL+R V
Sbjct: 118 IILKARDMIKLLARGV 133
>gi|388583024|gb|EIM23327.1| ribosomal RNA assembly protein mis3 [Wallemia sebi CBS 633.66]
Length = 382
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 160/235 (68%), Gaps = 41/235 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V ALE H I LD++EGSMTV TTRKT+DPYII+KARD+IKLLSRSV
Sbjct: 64 REKYLREVWPHVTRALEKHGINCVLDMVEGSMTVKTTRKTYDPYIILKARDLIKLLSRSV 123
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV+VL+D+ + DIIKIG LV+NK RFVKRRQR+IGPNG TLK+IELLT CY+LVQG
Sbjct: 124 PFSQAVKVLEDEYAADIIKIGGLVRNKDRFVKRRQRIIGPNGNTLKAIELLTECYILVQG 183
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP K GL VRRI+ D
Sbjct: 184 NTVSVMGPFK---------------------------------------GLKNVRRIILD 204
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFK--SKTLSKRKMPKKRK 315
M N+HPIY+IK LMIKR+LA+DP L E+W+RFLP+FK ++T S++ K RK
Sbjct: 205 CMNNVHPIYHIKELMIKRQLAEDPNLAGESWDRFLPSFKKRNQTTSEKTASKNRK 259
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 63/104 (60%), Gaps = 22/104 (21%)
Query: 5 WSMKIPEFKKEDNP------------------HEYLKECWPLVKNALELHFIKAELDVIE 46
+ K+ F EDNP +YL+E WP V ALE H I LD++E
Sbjct: 33 YKWKVDTFTNEDNPAGSFAEESSFATLFPKYREKYLREVWPHVTRALEKHGINCVLDMVE 92
Query: 47 GSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEP----LKEEY 86
GSMTV TTRKT+DPYII+KARD+IKLLSRSVP+ L++EY
Sbjct: 93 GSMTVKTTRKTYDPYIILKARDLIKLLSRSVPFSQAVKVLEDEY 136
>gi|409082561|gb|EKM82919.1| hypothetical protein AGABI1DRAFT_82619 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 388
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 167/275 (60%), Gaps = 69/275 (25%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V ALE H I LD++ GSM+V TTRKT+DPYII+KARDM+KLL+R V
Sbjct: 58 REKYLREVWSAVTRALETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGV 117
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L+DD++CDIIKIGNLV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 118 AVNQAVKILEDDMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 177
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP +K L +VRRIV D
Sbjct: 178 STVSAMGP---------------------------------------YKSLKEVRRIVLD 198
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL----------------- 305
MKNIHPIY IK LMI++ELAKDPKL +E W+RFLP F+ + L
Sbjct: 199 CMKNIHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKTAKKNERLEARA 258
Query: 306 -------------SKRKMPKKRKTKSEYTPFPPPQ 327
+K +K K K YTPFPP Q
Sbjct: 259 EARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQ 293
>gi|308450342|ref|XP_003088263.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
gi|308248562|gb|EFO92514.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
Length = 368
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 133/250 (53%), Positives = 171/250 (68%), Gaps = 46/250 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+KE WPL++ AL HF+KA+LD++EG+M V TTRKTWDPYII+KAR++IKLLSRSV
Sbjct: 71 REKYIKESWPLIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+RVL+D+I C+IIKI ++V+NK+RFVKRR RLIG +G TLK++ELLT CY+ VQG
Sbjct: 131 PYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+GP GL Q N +IV D
Sbjct: 191 GTVCAVGPLSGLKQIN---------------------------------------QIVSD 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-------KRKMPKKRK 315
MKNIHPIYNIK +MIKREL+K+ +LK+ NW+++LPN++ K S K+K K K
Sbjct: 212 CMKNIHPIYNIKTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTTKEAKKKKAYKMK 271
Query: 316 TKSEYTPFPP 325
K EYTPFPP
Sbjct: 272 PKGEYTPFPP 281
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y+KE WPL++ AL HF+KA+LD++EG+M V
Sbjct: 45 INTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTMCV 104
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYII+KAR++IKLLSRSVPYE
Sbjct: 105 RTTRKTWDPYIIMKAREVIKLLSRSVPYE 133
>gi|308470857|ref|XP_003097661.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
gi|308239962|gb|EFO83914.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
Length = 368
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 133/250 (53%), Positives = 171/250 (68%), Gaps = 46/250 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+KE WPL++ AL HF+KA+LD++EG+M V TTRKTWDPYII+KAR++IKLLSRSV
Sbjct: 71 REKYIKESWPLIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+RVL+D+I C+IIKI ++V+NK+RFVKRR RLIG +G TLK++ELLT CY+ VQG
Sbjct: 131 PYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+GP GL Q N +IV D
Sbjct: 191 GTVCAVGPLSGLKQIN---------------------------------------QIVSD 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-------KRKMPKKRK 315
MKNIHPIYNIK +MIKREL+K+ +LK+ NW+++LPN++ K S K+K K K
Sbjct: 212 CMKNIHPIYNIKTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTTKEAKKKKAYKMK 271
Query: 316 TKSEYTPFPP 325
K EYTPFPP
Sbjct: 272 PKGEYTPFPP 281
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y+KE WPL++ AL HF+KA+LD++EG+M V
Sbjct: 45 INTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTMCV 104
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYII+KAR++IKLLSRSVPYE
Sbjct: 105 RTTRKTWDPYIIMKAREVIKLLSRSVPYE 133
>gi|326429404|gb|EGD74974.1| hypothetical protein PTSG_07198 [Salpingoeca sp. ATCC 50818]
Length = 318
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 159/230 (69%), Gaps = 39/230 (16%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
+++ S S + +E+YL+E WP ++ L+ H I AELD++EGSMTV TTRKTWDPYII
Sbjct: 64 LVEESSFSTLFPKYREQYLREWWPHIERELKKHHIVAELDLVEGSMTVRTTRKTWDPYII 123
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKARD+IKLL+RSVP++ A RVLQD+I+C++IKI N+V+NK+RFVKRRQRLIGPNG TLK
Sbjct: 124 IKARDVIKLLARSVPFQHAKRVLQDEIACEVIKIANIVRNKERFVKRRQRLIGPNGATLK 183
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IELLT+CYMLVQG TV+ +GP+K
Sbjct: 184 AIELLTDCYMLVQGNTVSCIGPYK------------------------------------ 207
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
GL QVR++V D M NIHP+YNIK LMIKREL K LK E+W+RFLP
Sbjct: 208 ---GLKQVRKVVLDCMNNIHPVYNIKTLMIKRELMKREDLKGESWDRFLP 254
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 64/82 (78%), Gaps = 5/82 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S P+++++ YL+E WP ++ L+ H I AELD++EGSMTV TTRKTWDPY
Sbjct: 67 ESSFSTLFPKYREQ-----YLREWWPHIERELKKHHIVAELDLVEGSMTVRTTRKTWDPY 121
Query: 62 IIIKARDMIKLLSRSVPYEPLK 83
IIIKARD+IKLL+RSVP++ K
Sbjct: 122 IIIKARDVIKLLARSVPFQHAK 143
>gi|389747153|gb|EIM88332.1| ribosomal RNA assembly protein mis3 [Stereum hirsutum FP-91666 SS1]
Length = 405
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 165/272 (60%), Gaps = 66/272 (24%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W V AL+ H I LD+I GSM+V TTRK +DPY+I+KARD+IKLL+R V
Sbjct: 60 REKYLREAWSAVTRALDPHGIACTLDLIHGSMSVRTTRKAFDPYMILKARDLIKLLARGV 119
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L D+++CDIIKIGNLV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 120 AVTQAVKILDDNVACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 179
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 180 STVSVMGP---------------------------------------YKSLKEVRRIVLD 200
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-KRKMPKK-------- 313
MKNIHPIY IK LMIKRELAKDPKL E+W+RFLP F+ K LS K +K
Sbjct: 201 CMKNIHPIYRIKELMIKRELAKDPKLATESWDRFLPQFRRKHLSTSEKTARKNERMETKN 260
Query: 314 ------------------RKTKSEYTPFPPPQ 327
+K K YTPFPP Q
Sbjct: 261 DARQAAGLEPDKAPSAMAKKEKKVYTPFPPAQ 292
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W V AL+ H I LD+I GSM+V TTRK +DPY
Sbjct: 49 ESSFATLFPKYREK-----YLREAWSAVTRALDPHGIACTLDLIHGSMSVRTTRKAFDPY 103
Query: 62 IIIKARDMIKLLSRSV 77
+I+KARD+IKLL+R V
Sbjct: 104 MILKARDLIKLLARGV 119
>gi|302697271|ref|XP_003038314.1| 90S preribosome/SSU processome component KRR1 [Schizophyllum
commune H4-8]
gi|300112011|gb|EFJ03412.1| hypothetical protein SCHCODRAFT_46498 [Schizophyllum commune H4-8]
Length = 399
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/270 (49%), Positives = 166/270 (61%), Gaps = 64/270 (23%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE W V AL+ H + LD++ GSM V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 57 REKYLKEVWGAVTRALDHHGVACTLDLVHGSMAVRTTRKTYDPYIILKARDMIKLLARGV 116
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L D+++CDIIKIG+LV+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 117 AVAQAVKILDDNMACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 176
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 177 STVSVMGP---------------------------------------YKSLKEVRRIVLD 197
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-SKRKMPKKRK------ 315
MKNIHPIY IK LMI+RELAKDPKL NE+W+RFLP F+ + L + K KK +
Sbjct: 198 CMKNIHPIYRIKELMIRRELAKDPKLANESWDRFLPAFRKRHLKTSEKTAKKNERAAAKG 257
Query: 316 ------------------TKSEYTPFPPPQ 327
K YTPFPPPQ
Sbjct: 258 EARAAAGLDPEKVEKEKSKKKVYTPFPPPQ 287
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YLKE W V AL+ H + LD++ GSM V TTRKT+DPY
Sbjct: 46 ESSFATLFPKYREK-----YLKEVWGAVTRALDHHGVACTLDLVHGSMAVRTTRKTYDPY 100
Query: 62 IIIKARDMIKLLSRSV 77
II+KARDMIKLL+R V
Sbjct: 101 IILKARDMIKLLARGV 116
>gi|402226410|gb|EJU06470.1| hypothetical protein DACRYDRAFT_45074 [Dacryopinax sp. DJM-731 SS1]
Length = 397
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 167/260 (64%), Gaps = 47/260 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W +V +LE H I LD+I GSM+V TTRKT+DPYII KARDMIKLL+R V
Sbjct: 58 REKYLREVWGVVTTSLEAHGIACMLDLIHGSMSVRTTRKTFDPYIIFKARDMIKLLARGV 117
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QAV++L D ++CDIIKIGN+V+NK+RFVKRRQR+IGP+G TLK+IELLT CY+LVQG
Sbjct: 118 AVGQAVKILDDAVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 177
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +K L +VRRIV D
Sbjct: 178 NTVSVMGP---------------------------------------YKSLKEVRRIVID 198
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--- 319
M NIHPIY IK LMI+RELAKDPKL NE+W+RFLP F+ + L+ + K++ + E
Sbjct: 199 CMNNIHPIYRIKELMIRRELAKDPKLANESWDRFLPKFRKRNLTSAEKSAKKRARDEGEE 258
Query: 320 -----YTPFPPPQPESEANS 334
FP + ++E+++
Sbjct: 259 AQNGAQEAFPKEEDQAESST 278
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++ +YL+E W +V +LE H I LD+I GSM+V TTRKT+DPY
Sbjct: 47 ESSFATLFPKYR-----EKYLREVWGVVTTSLEAHGIACMLDLIHGSMSVRTTRKTFDPY 101
Query: 62 IIIKARDMIKLLSRSV 77
II KARDMIKLL+R V
Sbjct: 102 IIFKARDMIKLLARGV 117
>gi|328856064|gb|EGG05187.1| hypothetical protein MELLADRAFT_48934 [Melampsora larici-populina
98AG31]
Length = 428
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/255 (49%), Positives = 166/255 (65%), Gaps = 42/255 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E W + LE H + LD++EGSMTV TTRKT DP+II+KARD+IKLL+RSV
Sbjct: 73 REVYLREIWSHLTKVLETHGVACVLDLVEGSMTVKTTRKTCDPFIILKARDLIKLLARSV 132
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L+D ++CD++KIGN+++NK+RFVKRRQR++GP+G TLK+IELLT CY+LVQG
Sbjct: 133 PITQAVKILEDGVACDVVKIGNIIRNKERFVKRRQRILGPSGSTLKAIELLTGCYILVQG 192
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+ +GL VRRIV D
Sbjct: 193 TTVSVMGPY---------------------------------------RGLKTVRRIVID 213
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT---KSE 319
MKNIHP+Y+IK LMIKRELAKDPKL NENW+RFLPNF + +K+K + + S
Sbjct: 214 CMKNIHPVYHIKELMIKRELAKDPKLVNENWDRFLPNFSQRKKAKQKTTAEHQAIEESSH 273
Query: 320 YTPFPPPQPESEANS 334
P PQ S ++
Sbjct: 274 SNSNPNPQASSSKST 288
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 45/58 (77%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YL+E W + LE H + LD++EGSMTV TTRKT DP+II+KARD+IKLL+RSVP
Sbjct: 76 YLREIWSHLTKVLETHGVACVLDLVEGSMTVKTTRKTCDPFIILKARDLIKLLARSVP 133
>gi|255729762|ref|XP_002549806.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
gi|240132875|gb|EER32432.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
Length = 233
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 155/221 (70%), Gaps = 39/221 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+ W V ALE HFIK EL+++EGSMTV TT KT+DP +IIKARD+IKLL+RSV
Sbjct: 49 REQYLRGIWSDVTKALEKHFIKCELNLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK RF+KRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDVACDVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSK 303
MKNIHPIY IK LMIK+EL+K+P L NE+W RFLP+FK +
Sbjct: 190 CMKNIHPIYYIKELMIKQELSKNPDLANEDWSRFLPSFKKR 230
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ P+++++ YL+ W V ALE HFIK EL+++EGSMTV TT KT+DP
Sbjct: 38 ESSFMTLFPKYREQ-----YLRGIWSDVTKALEKHFIKCELNLVEGSMTVKTTTKTFDPA 92
Query: 62 IIIKARDMIKLLSRSVPY 79
+IIKARD+IKLL+RSVP+
Sbjct: 93 MIIKARDLIKLLARSVPF 110
>gi|358055242|dbj|GAA98750.1| hypothetical protein E5Q_05438 [Mixia osmundae IAM 14324]
Length = 355
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/235 (52%), Positives = 158/235 (67%), Gaps = 39/235 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S + +E YL+E W V + L+ H I LD++EGSMTV TTRKT+DPYII+KARD
Sbjct: 64 SFSTLFPKYREVYLREVWAGVTSQLDKHGIGCTLDLVEGSMTVRTTRKTFDPYIILKARD 123
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP+ QA+++L D ++CDIIKIGN+V+NK+RFVKRRQR++GP G TLK++ELL
Sbjct: 124 LIKLLARSVPFPQAIKILDDSVACDIIKIGNIVRNKERFVKRRQRILGPGGSTLKALELL 183
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
TNCY+LVQG TVAA+GP+K GL
Sbjct: 184 TNCYILVQGNTVAAMGPYK---------------------------------------GL 204
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
+VRR+V D + N+HPIY+IK +MIKRELAKDPKL E+W RFLP F + KR
Sbjct: 205 KEVRRVVLDCLANVHPIYHIKEMMIKRELAKDPKLAEEDWSRFLPQFTKRKQKKR 259
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S P++++ YL+E W V + L+ H I LD++EGSMTV TTRKT+DPY
Sbjct: 62 ESSFSTLFPKYREV-----YLREVWAGVTSQLDKHGIGCTLDLVEGSMTVRTTRKTFDPY 116
Query: 62 IIIKARDMIKLLSRSVPY 79
II+KARD+IKLL+RSVP+
Sbjct: 117 IILKARDLIKLLARSVPF 134
>gi|320592210|gb|EFX04649.1| rRNA assembly protein [Grosmannia clavigera kw1407]
Length = 327
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/253 (50%), Positives = 167/253 (66%), Gaps = 41/253 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+E WP V AL+ H I ELD++ G+MTV TTR+T+DP I+ ARD+I+LLSRSV
Sbjct: 48 REVYLREAWPGVTRALQKHGIACELDLVTGTMTVKTTRRTYDPAAILNARDLIRLLSRSV 107
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+RVL++ ++ DIIKI +LV+NK+RFVKRRQR++GP G TLK++E+LT Y+LVQG
Sbjct: 108 PAPQALRVLEEGVAADIIKIRSLVRNKERFVKRRQRILGPGGSTLKALEILTETYILVQG 167
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GP +GL VRR+VED
Sbjct: 168 GTVAVMGP---------------------------------------FRGLKDVRRVVED 188
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE--Y 320
M N+HPIY IK LM+KRELAKDP+L E+W+RFLPNFK +TLSKR++P K K+ Y
Sbjct: 189 CMANVHPIYMIKELMVKRELAKDPQLATESWDRFLPNFKKRTLSKRRVPLKVTDKAAKPY 248
Query: 321 TPFPPPQPESEAN 333
T FPP +S+ +
Sbjct: 249 TAFPPAPEKSKVD 261
>gi|452823541|gb|EME30551.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Galdieria
sulphuraria]
Length = 350
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/255 (53%), Positives = 166/255 (65%), Gaps = 40/255 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S + +E YL++ WP V +L+ + I ELD+++G+M V TT KTWDPYII KARD
Sbjct: 51 SFSTLFPQYREAYLRQVWPTVTKSLDTYSISCELDLVKGAMVVRTTAKTWDPYIIFKARD 110
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP +QA+++L+DD+ CDIIKI N +NK+RFVKRRQRLIG NG TLK+IELL
Sbjct: 111 LIKLLARSVPVQQALKILRDDMQCDIIKISNFTRNKERFVKRRQRLIGSNGATLKAIELL 170
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TVAA+G +KG L
Sbjct: 171 TQCYVLVQGSTVAAMGSYKG---------------------------------------L 191
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
QVRRIVED M+NIHPIYNIK LMIKRELAKDP L E+W+RFLP FK K K++ K
Sbjct: 192 KQVRRIVEDCMRNIHPIYNIKTLMIKRELAKDPILSKESWDRFLPKFKKKNPKKKRKVPK 251
Query: 314 RKTKSEY-TPFPPPQ 327
K E PFPPPQ
Sbjct: 252 NTKKDESDNPFPPPQ 266
>gi|412992272|emb|CCO19985.1| ribosomal RNA assembly protein mis3 [Bathycoccus prasinos]
Length = 390
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 132/245 (53%), Positives = 165/245 (67%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL++ WP + AL+ + EL+++EGSMTV TTRKTWDPYIIIKARD+IKLLSRSV
Sbjct: 68 REKYLRDVWPSITKALKDVGVGCELNLVEGSMTVRTTRKTWDPYIIIKARDLIKLLSRSV 127
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA++VL DD CD+IKIG LV+NK+RFVKRRQRL+GPNG TLK+IE+LT+CY+L+QG
Sbjct: 128 PAPQALKVLSDDTQCDVIKIGGLVRNKERFVKRRQRLVGPNGSTLKAIEMLTDCYVLIQG 187
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G KG L C R+IVED
Sbjct: 188 NTVSAMGSFKG------------------LKTC---------------------RKIVED 208
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKREL KDP+LKN++W+RFLP K KRK P+ K K +
Sbjct: 209 AMKNVHPIYHIKELMIKRELEKDPELKNQSWDRFLPK-FKKKNVKRKKPEYVKEKKARSV 267
Query: 323 FPPPQ 327
FPP Q
Sbjct: 268 FPPAQ 272
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%), Gaps = 17/87 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
+P+F KEDNPH +YL++ WP + AL+ + EL+++EGSMTV
Sbjct: 42 VPKFTKEDNPHGLLDESSFATLFPKYREKYLRDVWPSITKALKDVGVGCELNLVEGSMTV 101
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVP 78
TTRKTWDPYIIIKARD+IKLLSRSVP
Sbjct: 102 RTTRKTWDPYIIIKARDLIKLLSRSVP 128
>gi|255544688|ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
Length = 377
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/266 (50%), Positives = 180/266 (67%), Gaps = 42/266 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP+VK+A++ + + EL+++EGSMTV TTRKT DPYII
Sbjct: 44 MLEVSSFSTLFPQYREKYLQEVWPMVKSAIKEYGVACELNLVEGSMTVSTTRKTRDPYII 103
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L D++ CDIIKIGNLV+ K+RFVKRRQ L+GPN TLK
Sbjct: 104 VKARDLIKLLSRSVPAPQAIKILHDEMQCDIIKIGNLVRKKERFVKRRQHLVGPNSSTLK 163
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TVAA+G K
Sbjct: 164 ALEILTGCYILVQGNTVAAMGSFK------------------------------------ 187
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
GL QVR+IVED ++N +HP+Y+IK LM+K+EL KDP L+NENW+RFLP FK K +
Sbjct: 188 ---GLKQVRKIVEDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKKNVKH 244
Query: 308 RKMPKKRKTKSEYTPFPPPQPESEAN 333
K+ KRK K YTPFPP Q S+ +
Sbjct: 245 NKV--KRKEKKPYTPFPPEQQPSKVD 268
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WP+VK+A++ + + EL+++EGSMTV TTRKT DPYI
Sbjct: 48 SSFSTLFPQYR-----EKYLQEVWPMVKSAIKEYGVACELNLVEGSMTVSTTRKTRDPYI 102
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+IKLLSRSVP
Sbjct: 103 IVKARDLIKLLSRSVP 118
>gi|15241622|ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|13878039|gb|AAK44097.1|AF370282_1 putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|10178284|emb|CAC08342.1| rev interacting protein mis3-like [Arabidopsis thaliana]
gi|23296614|gb|AAN13132.1| putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|332003916|gb|AED91299.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 391
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 164/234 (70%), Gaps = 40/234 (17%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M + + S + +E+YL+ECWP V++AL+ + + +L+++EGSMTV TTRKT DPYII
Sbjct: 53 MTETSTFSTLFPQYREKYLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYII 112
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L+D++ CDIIKIGNLV+NK+RFVKRRQRL+GPN TLK
Sbjct: 113 VKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLK 172
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LTNCY+LVQG TVAA+GP K
Sbjct: 173 ALEILTNCYILVQGSTVAAMGPFK------------------------------------ 196
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
GL Q+RRIVED ++NI HP+Y+IK LM+K+EL KDP L NE+W+RFLP F+
Sbjct: 197 ---GLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFR 247
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+ +S P+++++ YL+ECWP V++AL+ + + +L+++EGSMTV TTRKT DPYI
Sbjct: 57 STFSTLFPQYREK-----YLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYI 111
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+IKLLSRSVP
Sbjct: 112 IVKARDLIKLLSRSVP 127
>gi|17557644|ref|NP_504837.1| Protein C05C8.2 [Caenorhabditis elegans]
gi|351021075|emb|CCD63088.1| Protein C05C8.2 [Caenorhabditis elegans]
Length = 370
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 132/250 (52%), Positives = 170/250 (68%), Gaps = 46/250 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+KE WPL++ AL HF+KA+LD++EG+M V TTRKTWDPYII+KAR++IKLLSRSV
Sbjct: 73 REKYIKESWPLIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSV 132
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+RVL+D+I C+IIKI ++V+NK+RFVKRR RLIG +G TLK++ELLT CY+ VQG
Sbjct: 133 PYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQG 192
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+GP GL Q N +IV D
Sbjct: 193 GTVCAVGPLAGLKQIN---------------------------------------QIVTD 213
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-------KRKMPKKRK 315
MKNIHPIYNIK +MIKREL+K+ +LK+ NW+ +LPN++ K S K+K K K
Sbjct: 214 CMKNIHPIYNIKTMMIKRELSKNDELKDANWDAYLPNYRKKVQSATTTKEAKKKKAYKMK 273
Query: 316 TKSEYTPFPP 325
K E+TPFPP
Sbjct: 274 PKKEFTPFPP 283
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y+KE WPL++ AL HF+KA+LD++EG+M V
Sbjct: 47 INTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTMCV 106
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYII+KAR++IKLLSRSVPYE
Sbjct: 107 RTTRKTWDPYIIMKAREVIKLLSRSVPYE 135
>gi|21592614|gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis thaliana]
Length = 391
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 164/234 (70%), Gaps = 40/234 (17%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M + + S + +E+YL+ECWP V++AL+ + + +L+++EGSMTV TTRKT DPYII
Sbjct: 53 MTETSTFSTLFPQYREKYLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYII 112
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L+D++ CDIIKIGNLV+NK+RFVKRRQRL+GPN TLK
Sbjct: 113 VKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLK 172
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LTNCY+LVQG TVAA+GP K
Sbjct: 173 ALEILTNCYILVQGSTVAAMGPFK------------------------------------ 196
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
GL Q+RRIVED ++NI HP+Y+IK LM+K+EL KDP L NE+W+RFLP F+
Sbjct: 197 ---GLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFR 247
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+ +S P+++++ YL+ECWP V++AL+ + + +L+++EGSMTV TTRKT DPYI
Sbjct: 57 STFSTLFPQYREK-----YLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYI 111
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+IKLLSRSVP
Sbjct: 112 IVKARDLIKLLSRSVP 127
>gi|209880169|ref|XP_002141524.1| KH domain-containing protein [Cryptosporidium muris RN66]
gi|209557130|gb|EEA07175.1| KH domain-containing protein [Cryptosporidium muris RN66]
Length = 369
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 136/262 (51%), Positives = 179/262 (68%), Gaps = 46/262 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S +V + +E+YL++ WP VKNAL+ + IK ELD++EGSMTV TT KTWDP+III+ARD
Sbjct: 60 SFAVLFPKYREKYLRDIWPDVKNALKEYQIKCELDLVEGSMTVRTTGKTWDPFIIIRARD 119
Query: 134 MIKLLSRSVPYEQAVRVL---QDD--ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+I+LL+RSVP+ QAVR+L +DD + CDIIKIG+ +NK++F+KRRQRL+GPNG TLK
Sbjct: 120 LIRLLARSVPFHQAVRILGYGEDDNNLGCDIIKIGH--RNKEKFIKRRQRLVGPNGSTLK 177
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IELLTNCY+LVQGQTV+ +GP+K
Sbjct: 178 AIELLTNCYILVQGQTVSVIGPYK------------------------------------ 201
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
GL QV RIVED M NIHPIY+IK LMIKREL KD KL+NENW+RF+P FK+K + ++
Sbjct: 202 ---GLKQVYRIVEDCMNNIHPIYHIKELMIKRELEKDEKLRNENWDRFIPKFKNKCIKRK 258
Query: 309 KMPKKRKTKSEYTPFPPPQPES 330
+ + +K KS + P P+ E
Sbjct: 259 EKKRIKKEKSLFPPEQLPRKED 280
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 61/89 (68%), Gaps = 17/89 (19%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K+P EDNPH +YL++ WP VKNAL+ + IK ELD++EGSMT
Sbjct: 42 KVPRLCPEDNPHGLLEESSFAVLFPKYREKYLRDIWPDVKNALKEYQIKCELDLVEGSMT 101
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
V TT KTWDP+III+ARD+I+LL+RSVP+
Sbjct: 102 VRTTGKTWDPFIIIRARDLIRLLARSVPF 130
>gi|115482288|ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|31432429|gb|AAP54059.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|215687236|dbj|BAG91801.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612935|gb|EEE51067.1| hypothetical protein OsJ_31745 [Oryza sativa Japonica Group]
Length = 395
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 177/266 (66%), Gaps = 54/266 (20%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYII
Sbjct: 59 MLEVSSFSTLFPQYREKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYII 118
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KA+++IKLLSRSVP QA+++L D++SCDIIKIG++++NK+RFVKRR+RL+GPN TLK
Sbjct: 119 VKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLK 178
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IE+LT CY+LVQG TVAA+G K
Sbjct: 179 AIEILTGCYILVQGNTVAAMGSWK------------------------------------ 202
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKT--- 304
GL QVRR+VED +KNI HP+Y+IK L+IKRELAK+P L NE+W+RFLP FK K
Sbjct: 203 ---GLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQ 259
Query: 305 ---LSKRKMPKKRKTKSEYTPFPPPQ 327
++K K P YTPFPPPQ
Sbjct: 260 KKPITKEKKP--------YTPFPPPQ 277
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 58/76 (76%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYI
Sbjct: 63 SSFSTLFPQYR-----EKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYI 117
Query: 63 IIKARDMIKLLSRSVP 78
I+KA+++IKLLSRSVP
Sbjct: 118 IVKAKELIKLLSRSVP 133
>gi|218184655|gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indica Group]
Length = 395
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 177/266 (66%), Gaps = 54/266 (20%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYII
Sbjct: 59 MLEVSSFSTLFPQYREKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYII 118
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KA+++IKLLSRSVP QA+++L D++SCDIIKIG++++NK+RFVKRR+RL+GPN TLK
Sbjct: 119 VKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLK 178
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IE+LT CY+LVQG TVAA+G K
Sbjct: 179 AIEILTGCYILVQGNTVAAMGSWK------------------------------------ 202
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKT--- 304
GL QVRR+VED +KNI HP+Y+IK L+IKRELAK+P L NE+W+RFLP FK K
Sbjct: 203 ---GLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQ 259
Query: 305 ---LSKRKMPKKRKTKSEYTPFPPPQ 327
++K K P YTPFPPPQ
Sbjct: 260 KKPITKEKKP--------YTPFPPPQ 277
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 58/76 (76%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYI
Sbjct: 63 SSFSTLFPQYR-----EKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYI 117
Query: 63 IIKARDMIKLLSRSVP 78
I+KA+++IKLLSRSVP
Sbjct: 118 IVKAKELIKLLSRSVP 133
>gi|294898650|ref|XP_002776320.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239883230|gb|EER08136.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 337
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 162/245 (66%), Gaps = 41/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WP VK L IKAEL+++EGSMTV TTRKTWDPY II+ARD+IKLL+RSV
Sbjct: 73 RENYLKQVWPDVKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSV 132
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA +++ D++ CDIIK G LV+NK++FVKRRQRL+GPNG TLK+IELLT CY+LVQG
Sbjct: 133 PLPQAKKIMDDNMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQG 192
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV A+G H K L QVRRIVED
Sbjct: 193 QTVVAMGTH---------------------------------------KALKQVRRIVED 213
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
N+HP+Y++K LMIK+EL K+ LK+ENW+RFLP+FK++ + ++K K K E
Sbjct: 214 CFHNVHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQRKKQKKIAKKSKEL-- 271
Query: 323 FPPPQ 327
FPP Q
Sbjct: 272 FPPEQ 276
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 55/88 (62%), Gaps = 17/88 (19%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K F KEDNP YLK+ WP VK L IKAEL+++EGSMT
Sbjct: 46 KYESFAKEDNPSGLLEESSFATLFPQYRENYLKQVWPDVKQVLAPFEIKAELNLVEGSMT 105
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVP 78
V TTRKTWDPY II+ARD+IKLL+RSVP
Sbjct: 106 VRTTRKTWDPYAIIRARDLIKLLARSVP 133
>gi|357493549|ref|XP_003617063.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355518398|gb|AET00022.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 424
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 176/266 (66%), Gaps = 42/266 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WPLVK++L+ I AEL+++EGSMTV TTRKT DPYII
Sbjct: 92 MLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYII 151
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+I+LLSRSVP QA++VL D++ CDIIKI LV+NK+RFVKRRQ L+GPN TLK
Sbjct: 152 VKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKERFVKRRQHLVGPNSSTLK 211
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TV+ +G +KG
Sbjct: 212 ALEILTGCYILVQGNTVSVMGSYKG----------------------------------- 236
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
L QVRRIVE+ M N +HP+YNIK LM+K+EL KDP L ENW+RFLP F K + +
Sbjct: 237 ----LKQVRRIVEECMLNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQ 292
Query: 308 RKMPKKRKTKSEYTPFPPPQPESEAN 333
+K+ K K YTPFPPPQ S+ +
Sbjct: 293 KKV--NAKPKKPYTPFPPPQQPSKVD 316
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 61/76 (80%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++++ YL+E WPLVK++L+ I AEL+++EGSMTV TTRKT DPYI
Sbjct: 96 SSFSTLFPQYREK-----YLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYI 150
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+I+LLSRSVP
Sbjct: 151 IVKARDLIRLLSRSVP 166
>gi|388504376|gb|AFK40254.1| unknown [Medicago truncatula]
Length = 380
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/266 (50%), Positives = 176/266 (66%), Gaps = 42/266 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WPLVK++L+ I AEL+++EGSMTV TTRKT DPYII
Sbjct: 48 MLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYII 107
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+I+LLSRSVP QA++VL D++ CDIIKI LV+NK+RFVKRRQ L+GPN TLK
Sbjct: 108 VKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKERFVKRRQHLVGPNSSTLK 167
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TV+ +G +KG
Sbjct: 168 ALEILTGCYILVQGNTVSVMGSYKG----------------------------------- 192
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
L QVRRIVE+ M N +HP+YNIK LM+K+EL KDP L ENW+RFLP F K + +
Sbjct: 193 ----LKQVRRIVEECMLNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQ 248
Query: 308 RKMPKKRKTKSEYTPFPPPQPESEAN 333
+K+ K K YTPFPPPQ S+ +
Sbjct: 249 KKV--NAKPKKPYTPFPPPQQPSKVD 272
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WPLVK++L+ I AEL+++EGSMTV TTRKT DPYI
Sbjct: 52 SSFSTLFPQYR-----EKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYI 106
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+I+LLSRSVP
Sbjct: 107 IVKARDLIRLLSRSVP 122
>gi|356501320|ref|XP_003519473.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max]
Length = 389
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/260 (51%), Positives = 174/260 (66%), Gaps = 42/260 (16%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP+VK+AL+ + EL+++EGSMTV TTRKT DPYII
Sbjct: 57 MLEVSSFSTLFPQYREKYLQEAWPMVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYII 116
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKARD+IKLLSRS+P QA+++L D++ CDIIKI +V+NK+RFVKRRQ L+GPN TLK
Sbjct: 117 IKARDLIKLLSRSLPAPQAIKILDDEMQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLK 176
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TVAA+G KG
Sbjct: 177 ALEILTGCYILVQGNTVAAMGSFKG----------------------------------- 201
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
L QVRRIVE+ M N +HP+YNIK LM+K+EL KDP L ENW+RFLP FK K + +
Sbjct: 202 ----LKQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQ 257
Query: 308 RKMPKKRKTKSEYTPFPPPQ 327
+K+ K+K YTPFPPPQ
Sbjct: 258 KKVNTKQKKP--YTPFPPPQ 275
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WP+VK+AL+ + EL+++EGSMTV TTRKT DPYI
Sbjct: 61 SSFSTLFPQYR-----EKYLQEAWPMVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYI 115
Query: 63 IIKARDMIKLLSRSVP 78
IIKARD+IKLLSRS+P
Sbjct: 116 IIKARDLIKLLSRSLP 131
>gi|331249379|ref|XP_003337307.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316297|gb|EFP92888.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 153/218 (70%), Gaps = 39/218 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W + LE H + L+++EGSMTV TTRKT DPYII+KARD+IKLL+RSV
Sbjct: 73 REVYLKEIWSHLTKVLEQHGVACVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSV 132
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D+++CD+IKIGN+++NK+RFVKRRQR++GP+G TLK+IELLT+CY+LVQG
Sbjct: 133 PITQAVKILDDNVACDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQG 192
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL VRRIV D
Sbjct: 193 TTVSAMGPYK---------------------------------------GLKVVRRIVID 213
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
MKNIHPIY+IK LMIKRELAK+PKL ENW+RFLPNF
Sbjct: 214 CMKNIHPIYHIKELMIKRELAKNPKLAEENWDRFLPNF 251
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLKE W + LE H + L+++EGSMTV TTRKT DPYII+KARD+IKLL+RSVP
Sbjct: 76 YLKEIWSHLTKVLEQHGVACVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVP 133
>gi|294894848|ref|XP_002774982.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239880765|gb|EER06798.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 526
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/245 (52%), Positives = 162/245 (66%), Gaps = 40/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WP VK L IKAEL+++EGSMTV TTRKTWDPY II+ARD+IKLL+RSV
Sbjct: 73 RENYLKQVWPDVKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSV 132
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA +++ D++ CDIIK G LV+NK++FVKRRQRL+GPNG TLK+IELLT CY+LVQG
Sbjct: 133 PLPQAKKIMDDNMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQG 192
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV A+G H K L QVRRIVED
Sbjct: 193 QTVVAMGTH---------------------------------------KALKQVRRIVED 213
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
N+HP+Y++K LMIK+EL K+ LK+ENW+RFLP+FK++ + +RK KK K
Sbjct: 214 CFHNVHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNV-QRKKQKKIAKKKSKEL 272
Query: 323 FPPPQ 327
FPP Q
Sbjct: 273 FPPEQ 277
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 55/88 (62%), Gaps = 17/88 (19%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K F KEDNP YLK+ WP VK L IKAEL+++EGSMT
Sbjct: 46 KYESFAKEDNPSGLLEESSFATLFPQYRENYLKQVWPDVKQVLAPFEIKAELNLVEGSMT 105
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVP 78
V TTRKTWDPY II+ARD+IKLL+RSVP
Sbjct: 106 VRTTRKTWDPYAIIRARDLIKLLARSVP 133
>gi|297806883|ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
gi|297317162|gb|EFH47584.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
Length = 391
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 164/234 (70%), Gaps = 40/234 (17%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M++ S S + +E+YL+E WP V++AL+ + + +L+++EGSMTV TTRKT DPYII
Sbjct: 53 MLETSSFSTLFPQYREKYLQESWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYII 112
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L+D++ CDIIKIG+LV+NKQRFVKRRQRL+GPN TLK
Sbjct: 113 VKARDLIKLLSRSVPAPQAIKILEDEMQCDIIKIGSLVRNKQRFVKRRQRLVGPNSSTLK 172
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LTNCY+LVQG TVAA+GP K
Sbjct: 173 ALEILTNCYILVQGSTVAAMGPFK------------------------------------ 196
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
GL Q+RRIVED ++N +HP+Y+IK LM+K+EL KDP L NE+W+RFLP F+
Sbjct: 197 ---GLKQLRRIVEDCVQNKMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFR 247
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WP V++AL+ + + +L+++EGSMTV TTRKT DPYI
Sbjct: 57 SSFSTLFPQYR-----EKYLQESWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYI 111
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+IKLLSRSVP
Sbjct: 112 IVKARDLIKLLSRSVP 127
>gi|268558824|ref|XP_002637403.1| Hypothetical protein CBG19110 [Caenorhabditis briggsae]
gi|268558832|ref|XP_002637407.1| Hypothetical protein CBG19114 [Caenorhabditis briggsae]
Length = 371
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 169/250 (67%), Gaps = 46/250 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+KE WPL++ AL H +KA+LD++EG+M V TTRKTWDPYII+KAR+++KLLSRSV
Sbjct: 73 REKYIKESWPLIEKALGEHHLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVLKLLSRSV 132
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+RVL+D+I C+IIKI ++V+NK+RFVKRR RLIG +G TLK++ELLT CY+ VQG
Sbjct: 133 PYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQG 192
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+GP GL Q N +IV D
Sbjct: 193 GTVCAVGPLSGLKQIN---------------------------------------QIVTD 213
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-------KRKMPKKRK 315
MKNIHPIYNIK++MIKRELAK+ +LK+ NW+ +LP ++ K S K+K K K
Sbjct: 214 CMKNIHPIYNIKSMMIKRELAKNDELKDTNWDPYLPKYRKKVQSASTTKEAKKKKAYKMK 273
Query: 316 TKSEYTPFPP 325
K EYTPFPP
Sbjct: 274 PKGEYTPFPP 283
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 62/89 (69%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y+KE WPL++ AL H +KA+LD++EG+M V
Sbjct: 47 INTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHHLKADLDLLEGTMCV 106
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYII+KAR+++KLLSRSVPYE
Sbjct: 107 RTTRKTWDPYIIMKAREVLKLLSRSVPYE 135
>gi|331252066|ref|XP_003338607.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309317597|gb|EFP94188.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 153/218 (70%), Gaps = 39/218 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W + LE H + L+++EGSMTV TTRKT DPYII+KARD+IKLL+RSV
Sbjct: 73 REVYLKEIWSHLTKVLEQHGVTCVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSV 132
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QAV++L D+++CD+IKIGN+++NK+RFVKRRQR++GP+G TLK+IELLT+CY+LVQG
Sbjct: 133 PITQAVKILDDNVACDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQG 192
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP+K GL VRRIV D
Sbjct: 193 TTVSAMGPYK---------------------------------------GLKVVRRIVID 213
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
MKNIHPIY+IK LMIKRELAK+PKL ENW+RFLPNF
Sbjct: 214 CMKNIHPIYHIKELMIKRELAKNPKLAEENWDRFLPNF 251
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YLKE W + LE H + L+++EGSMTV TTRKT DPYII+KARD+IKLL+RSVP
Sbjct: 76 YLKEIWSHLTKVLEQHGVTCVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVP 133
>gi|341883487|gb|EGT39422.1| hypothetical protein CAEBREN_11963 [Caenorhabditis brenneri]
Length = 368
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 168/250 (67%), Gaps = 46/250 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+KE WPL++ AL HF+KA+LD++EG+M V TTRKTWDPYII+KAR++IKLLSRSV
Sbjct: 71 REKYIKESWPLIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+RVL+D+I C+IIKI ++V+NK+RFVKRR RLIG +G TLK++ELLT CY+ VQG
Sbjct: 131 PYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+GP GL Q N +IV D
Sbjct: 191 GTVCAVGPLAGLKQIN---------------------------------------QIVTD 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-------KRKMPKKRK 315
MKNIHPIYNIK +MIKREL+K+ LK+ NW+ +LP ++ K S K+K K K
Sbjct: 212 CMKNIHPIYNIKTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTTKEAKKKKAYKMK 271
Query: 316 TKSEYTPFPP 325
K EYTP+PP
Sbjct: 272 PKKEYTPYPP 281
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y+KE WPL++ AL HF+KA+LD++EG+M V
Sbjct: 45 INTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTMCV 104
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYII+KAR++IKLLSRSVPYE
Sbjct: 105 RTTRKTWDPYIIMKAREVIKLLSRSVPYE 133
>gi|341902510|gb|EGT58445.1| hypothetical protein CAEBREN_10565 [Caenorhabditis brenneri]
Length = 368
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 168/250 (67%), Gaps = 46/250 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+KE WPL++ AL HF+KA+LD++EG+M V TTRKTWDPYII+KAR++IKLLSRSV
Sbjct: 71 REKYIKESWPLIEKALGEHFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYEQA+RVL+D+I C+IIKI ++V+NK+RFVKRR RLIG +G TLK++ELLT CY+ VQG
Sbjct: 131 PYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV A+GP GL Q N +IV D
Sbjct: 191 GTVCAVGPLAGLKQIN---------------------------------------QIVTD 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS-------KRKMPKKRK 315
MKNIHPIYNIK +MIKREL+K+ LK+ NW+ +LP ++ K S K+K K K
Sbjct: 212 CMKNIHPIYNIKTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTTKEAKKKKAYKMK 271
Query: 316 TKSEYTPFPP 325
K EYTP+PP
Sbjct: 272 PKKEYTPYPP 281
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 17/89 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
I F KEDNP+ +Y+KE WPL++ AL HF+KA+LD++EG+M V
Sbjct: 45 INTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTMCV 104
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
TTRKTWDPYII+KAR++IKLLSRSVPYE
Sbjct: 105 RTTRKTWDPYIIMKAREVIKLLSRSVPYE 133
>gi|428169969|gb|EKX38898.1| hypothetical protein GUITHDRAFT_158464 [Guillardia theta CCMP2712]
Length = 356
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 163/251 (64%), Gaps = 46/251 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP + L+ + EL+++EGSMTV TTRKTWDPYII+K+RD+IKLL+RSV
Sbjct: 69 REQYLRETWPAITKELDRVGVACELNLVEGSMTVKTTRKTWDPYIILKSRDLIKLLARSV 128
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +QA+++LQDD+ CDIIKI +V+NK RFVKRRQRL+GPNG TLK++ELLT
Sbjct: 129 PAQQALKILQDDVQCDIIKISGMVRNKDRFVKRRQRLLGPNGSTLKALELLTK------- 181
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +G+ Q+ R+++ D
Sbjct: 182 NTVSVMGSFQGIKQA---------------------------------------RKVIVD 202
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHPIYNIKALMI+REL+KD KLKNE+W+RFLP FK + + +K + K EYTP
Sbjct: 203 CMNNIHPIYNIKALMIRRELSKDEKLKNESWDRFLPKFKKRNVKTKKPKETAAKKKEYTP 262
Query: 323 FPPPQPESEAN 333
FPPPQ S+ +
Sbjct: 263 FPPPQQPSKVD 273
>gi|359807638|ref|NP_001241422.1| uncharacterized protein LOC100816856 [Glycine max]
gi|255639399|gb|ACU19995.1| unknown [Glycine max]
Length = 389
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 174/260 (66%), Gaps = 42/260 (16%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP+VK++L+ + EL+++EGSMTV TTRKT DPYII
Sbjct: 57 MLEVSSFSTLFPQYREKYLQEAWPMVKSSLKEFGVACELNLVEGSMTVSTTRKTRDPYII 116
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKARD+IKLLSRS+P QA+++L D++ CDIIKI +V+NK+RFVKRRQ L+GPN TLK
Sbjct: 117 IKARDLIKLLSRSIPAPQAIKILDDEMQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLK 176
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TVAA+G KG
Sbjct: 177 ALEILTGCYILVQGNTVAAMGSFKG----------------------------------- 201
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
L QVRRIVE+ M N +HP+YNIK LM+K+EL KDP L ENW+RFLP FK K + +
Sbjct: 202 ----LKQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQ 257
Query: 308 RKMPKKRKTKSEYTPFPPPQ 327
+K+ K+K YTPFPPPQ
Sbjct: 258 KKVNTKQKKP--YTPFPPPQ 275
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++ +YL+E WP+VK++L+ + EL+++EGSMTV TTRKT DPYI
Sbjct: 61 SSFSTLFPQYR-----EKYLQEAWPMVKSSLKEFGVACELNLVEGSMTVSTTRKTRDPYI 115
Query: 63 IIKARDMIKLLSRSVP 78
IIKARD+IKLLSRS+P
Sbjct: 116 IIKARDLIKLLSRSIP 131
>gi|403222226|dbj|BAM40358.1| ribosomal RNA assembly protein [Theileria orientalis strain
Shintoku]
Length = 396
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 125/237 (52%), Positives = 157/237 (66%), Gaps = 39/237 (16%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
+++ S SV + +E+Y++ W VK L + IK ELD++EGSM V T+ KTWDPYII
Sbjct: 38 LVEESSFSVLFPKYREKYIQSVWGDVKKCLSQYHIKCELDLLEGSMAVITSSKTWDPYII 97
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKARDMIKLL+RSVP+ QA +VL D + CDI+KIG +++NK +FVKRRQRL+GP G TLK
Sbjct: 98 IKARDMIKLLARSVPFPQARKVLDDGVFCDIVKIGGILRNKDKFVKRRQRLVGPGGSTLK 157
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++ELLT CY+L QGQTV+ +GP +QG VA
Sbjct: 158 ALELLTGCYILTQGQTVSIVGP----------------------------IQGIKVA--- 186
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
RRIVED MKNIHP+Y+IK LMIKREL KD KLKNENWERFLP FK + +
Sbjct: 187 --------RRIVEDCMKNIHPVYHIKELMIKRELQKDEKLKNENWERFLPQFKKRCV 235
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S+ P+++ +Y++ W VK L + IK ELD++EGSM V T+ KTWDPY
Sbjct: 41 ESSFSVLFPKYR-----EKYIQSVWGDVKKCLSQYHIKCELDLLEGSMAVITSSKTWDPY 95
Query: 62 IIIKARDMIKLLSRSVPY 79
IIIKARDMIKLL+RSVP+
Sbjct: 96 IIIKARDMIKLLARSVPF 113
>gi|118348580|ref|XP_001007765.1| Protein kinase domain containing protein [Tetrahymena thermophila]
gi|89289532|gb|EAR87520.1| Protein kinase domain containing protein [Tetrahymena thermophila
SB210]
Length = 1028
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 173/254 (68%), Gaps = 40/254 (15%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S + + +E+Y++EC+ VK L + IKAEL++ EGS+TV TT+KTWDPY IIKARD
Sbjct: 721 SFATLFPQYREKYIQECFGNVKKVLSEYGIKAELNLTEGSITVRTTKKTWDPYAIIKARD 780
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
IKLL+RSVP++QA+RV++D + D++KI +LV+NK++F+KRRQRLIGPNG TLK++ELL
Sbjct: 781 CIKLLARSVPFQQALRVMEDGVFSDVVKIRSLVKNKEKFIKRRQRLIGPNGQTLKALELL 840
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
TNCY++VQG TV+ +G + L ++L
Sbjct: 841 TNCYIMVQGSTVSCIGDWRQL---------------KIL--------------------- 864
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
RRIVEDTM NIHPIYNIK LMIKRELAKD KLKNENW+RFLP FK K+K K+
Sbjct: 865 ---RRIVEDTMFNIHPIYNIKELMIKRELAKDEKLKNENWDRFLPQFKKMN-VKKKAKKQ 920
Query: 314 RKTKSEYTPFPPPQ 327
+ K EYTPFPP Q
Sbjct: 921 KVEKKEYTPFPPEQ 934
>gi|224094246|ref|XP_002310107.1| predicted protein [Populus trichocarpa]
gi|222853010|gb|EEE90557.1| predicted protein [Populus trichocarpa]
Length = 379
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 177/263 (67%), Gaps = 42/263 (15%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+ + S S + +E+YL + WP+VK+AL+ I EL+ EGSMTV TT KT DPYII
Sbjct: 52 MVDVSSFSTLFPKYREKYLTDAWPMVKSALKEFGIDCELNKNEGSMTVKTTIKTRDPYII 111
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L DD+SCDIIKIGN+++NK+RFVKRRQ L+GPN TLK
Sbjct: 112 VKARDLIKLLSRSVPAPQAIKILNDDMSCDIIKIGNMIRNKERFVKRRQNLVGPNSSTLK 171
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++ELLT CY+LVQG TVAA+G K
Sbjct: 172 ALELLTGCYILVQGNTVAAMGSFK------------------------------------ 195
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
GL QVRRIVED ++N +HP+Y+IK LM+K+EL KDP LKNENW+RFLP +K KT+ +
Sbjct: 196 ---GLKQVRRIVEDCIQNKMHPVYHIKILMMKKELEKDPALKNENWDRFLPKYKKKTVKQ 252
Query: 308 RKMPKKRKTKSEYTPFPPPQPES 330
+K+ K+K + TPFPPPQ S
Sbjct: 253 KKVKSKKKKQD--TPFPPPQQPS 273
>gi|67607248|ref|XP_666799.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657852|gb|EAL36562.1| hypothetical protein Chro.30334, partial [Cryptosporidium hominis]
Length = 343
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 171/263 (65%), Gaps = 47/263 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S +V + +E+YL++ WP ++NAL+ H IK ELD++EGS+TV TT KTWDP+III+ARD
Sbjct: 52 SFAVLFPKYREKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARD 111
Query: 134 MIKLLSRSVPYEQAVRVLQD-----DISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
M+KLLSRSVP+ QAVR+L D ++ CDIIKIG+ +NK++ VKRRQRL+GPNG TLK
Sbjct: 112 MVKLLSRSVPFHQAVRILGDGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLK 169
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IELLTNCY+LVQGQTV+ +G
Sbjct: 170 AIELLTNCYVLVQGQTVSVIG--------------------------------------- 190
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
+K L VRRIVED M NIHP+Y+IK LMIKREL KD +L+ ENW+RFLP FK+K + ++
Sbjct: 191 SYKSLKLVRRIVEDCMNNIHPVYHIKELMIKRELEKDERLRGENWDRFLPKFKNKCVKRK 250
Query: 309 KMPKKRKTKSEYTPFPPPQPESE 331
+ +K P P P P E
Sbjct: 251 VKKQMKKKNKSIFP-PEPTPRKE 272
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 17/88 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
+P+ EDNPH +YL++ WP ++NAL+ H IK ELD++EGS+TV
Sbjct: 35 VPKLTPEDNPHGLLEESSFAVLFPKYREKYLRDIWPDIRNALKAHHIKCELDLVEGSITV 94
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TT KTWDP+III+ARDM+KLLSRSVP+
Sbjct: 95 RTTGKTWDPFIIIRARDMVKLLSRSVPF 122
>gi|66359348|ref|XP_626852.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
gi|46228137|gb|EAK89036.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
Length = 358
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 172/263 (65%), Gaps = 47/263 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S +V + +E+YL++ WP ++NAL+ H IK ELD++EGS+TV TT KTWDP+III+ARD
Sbjct: 55 SFAVLFPKYREKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARD 114
Query: 134 MIKLLSRSVPYEQAVRVL---QDD--ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
M+KLLSRSVP+ QAVR+L +DD + CDIIKIG+ +NK++ VKRRQRL+GPNG TLK
Sbjct: 115 MVKLLSRSVPFHQAVRILGEGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLK 172
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IELLTNCY+LVQGQTV+ +G
Sbjct: 173 AIELLTNCYVLVQGQTVSVIG--------------------------------------- 193
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
+K L VRRIVED M NIHP+Y+IK LMIKREL KD +L+ ENW+RFLP FK+K + ++
Sbjct: 194 SYKSLKLVRRIVEDCMNNIHPVYHIKELMIKRELEKDERLRGENWDRFLPKFKNKCVKRK 253
Query: 309 KMPKKRKTKSEYTPFPPPQPESE 331
+ +K P P P P E
Sbjct: 254 VKKQIKKKNKSIFP-PEPTPRKE 275
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 17/88 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
+P+ EDNPH +YL++ WP ++NAL+ H IK ELD++EGS+TV
Sbjct: 38 VPKLTPEDNPHGLLEESSFAVLFPKYREKYLRDIWPDIRNALKAHHIKCELDLVEGSITV 97
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TT KTWDP+III+ARDM+KLLSRSVP+
Sbjct: 98 RTTGKTWDPFIIIRARDMVKLLSRSVPF 125
>gi|50557280|ref|XP_506048.1| 90S preribosome/SSU processome component KRR1 [Yarrowia lipolytica
CLIB122]
gi|49651918|emb|CAG78861.1| YALI0F30393p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 160/245 (65%), Gaps = 41/245 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKE W V AL+ I LD++EGSMTV TTRKT+DPY I+ ARD+IKLL+RSV
Sbjct: 49 REGYLKEIWDDVTKALDQKGIACVLDLVEGSMTVKTTRKTYDPYAIMNARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++L+D I+CD+IKIGN NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILEDGIACDVIKIGNFTSNKERFVKRRQRLLGPNGNTLKALELLTQCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP+ +K++ RR++ED
Sbjct: 169 NTVSVMGPY------------THMKTL---------------------------RRVIED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M NIHPIY+IK LMIKRELAK P+L E+W RFLP FK + ++ RK PK K K T
Sbjct: 190 CMMNIHPIYHIKELMIKRELAKRPELAEEDWSRFLPQFKKRNVA-RKKPKTIKNKVR-TA 247
Query: 323 FPPPQ 327
FPP Q
Sbjct: 248 FPPAQ 252
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P++++ YLKE W V AL+ I LD++EGSMTV TTRKT+DPY
Sbjct: 38 ESSFATLFPKYREG-----YLKEIWDDVTKALDQKGIACVLDLVEGSMTVKTTRKTYDPY 92
Query: 62 IIIKARDMIKLLSRSVPY 79
I+ ARD+IKLL+RSVP+
Sbjct: 93 AIMNARDLIKLLARSVPF 110
>gi|323509785|dbj|BAJ77785.1| cgd3_2950 [Cryptosporidium parvum]
Length = 302
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 172/263 (65%), Gaps = 47/263 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S +V + +E+YL++ WP ++NAL+ H IK ELD++EGS+TV TT KTWDP+III+ARD
Sbjct: 55 SFAVLFPKYREKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARD 114
Query: 134 MIKLLSRSVPYEQAVRVL---QDD--ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
M+KLLSRSVP+ QAVR+L +DD + CDIIKIG+ +NK++ VKRRQRL+GPNG TLK
Sbjct: 115 MVKLLSRSVPFHQAVRILGEGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLK 172
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IELLTNCY+LVQGQTV+ +G
Sbjct: 173 AIELLTNCYVLVQGQTVSVIG--------------------------------------- 193
Query: 249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
+K L VRRIVED M NIHP+Y+IK LMIKREL KD +L+ ENW+RFLP FK+K + ++
Sbjct: 194 SYKSLKLVRRIVEDCMNNIHPVYHIKELMIKRELEKDERLRGENWDRFLPKFKNKCVKRK 253
Query: 309 KMPKKRKTKSEYTPFPPPQPESE 331
+ +K P P P P E
Sbjct: 254 VKKQIKKKNKSIFP-PEPTPRKE 275
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 17/88 (19%)
Query: 9 IPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMTV 51
+P+ EDNPH +YL++ WP ++NAL+ H IK ELD++EGS+TV
Sbjct: 38 VPKLTPEDNPHGLLEESSFAVLFPKYREKYLRDIWPDIRNALKAHHIKCELDLVEGSITV 97
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPY 79
TT KTWDP+III+ARDM+KLLSRSVP+
Sbjct: 98 RTTGKTWDPFIIIRARDMVKLLSRSVPF 125
>gi|407916980|gb|EKG10307.1| K-like protein [Macrophomina phaseolina MS6]
Length = 262
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/222 (55%), Positives = 153/222 (68%), Gaps = 41/222 (18%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
MTV TTRKTWDP I+KARD+IKLL+RSVP QA+++L D +CDIIKI NLV+NK+RFV
Sbjct: 1 MTVKTTRKTWDPAAILKARDLIKLLARSVPAPQALKILDDGTACDIIKIRNLVRNKERFV 60
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRRQR++G P+G TLK++ELLT
Sbjct: 61 KRRQRILG---------------------------------------PDGSTLKALELLT 81
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENW 293
CY+LVQG TVAA+G +KGL +VRR+VED M NIHPIY IK LMIKRELAKDP+L NE+W
Sbjct: 82 GCYILVQGNTVAAMGGYKGLKEVRRVVEDCMANIHPIYYIKELMIKRELAKDPELVNESW 141
Query: 294 ERFLPNFKSKTLSKRKMPKK--RKTKSEYTPFPPPQPESEAN 333
+RFLPNFK + +KR++P K K+K YTPFPPPQ +S+ +
Sbjct: 142 DRFLPNFKKRHTAKRRVPHKVTDKSKKVYTPFPPPQEKSKVD 183
>gi|399217414|emb|CCF74301.1| unnamed protein product [Babesia microti strain RI]
Length = 367
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 162/248 (65%), Gaps = 39/248 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y++ W VK L H I+ LD++EGSM+V+T++KTWDPYIIIKARDMIKLL+RSV
Sbjct: 71 REKYIQSIWADVKKCLGEHNIRCNLDLVEGSMSVYTSKKTWDPYIIIKARDMIKLLARSV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA ++L D + CDI+KIG L++NK++FVKRRQRL+GP G TLK++E+LT CY+L QG
Sbjct: 131 PFAQARKILLDGVYCDIVKIGGLIRNKEKFVKRRQRLVGPGGTTLKALEILTECYILTQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV+ +GP KG+ + RRIVED
Sbjct: 191 QTVSIMGPFKGVKLA---------------------------------------RRIVED 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
M+NIHP+Y+IK LMIKREL KD LKNENW+RFLP FK + + ++K K+K + P
Sbjct: 212 CMRNIHPVYHIKELMIKRELNKDENLKNENWDRFLPQFKKRNVQRKKFKSKKKNSNSIIP 271
Query: 323 FPPPQPES 330
P+ E
Sbjct: 272 DQTPRKED 279
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ Y++ W VK L H I+ LD++EGSM+V+T++KTWDPY
Sbjct: 60 ESSFATLFPKYREK-----YIQSIWADVKKCLGEHNIRCNLDLVEGSMSVYTSKKTWDPY 114
Query: 62 IIIKARDMIKLLSRSVPY 79
IIIKARDMIKLL+RSVP+
Sbjct: 115 IIIKARDMIKLLARSVPF 132
>gi|58265972|ref|XP_570142.1| rRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110418|ref|XP_776036.1| 90S preribosome/SSU processome component KRR1 [Cryptococcus
neoformans var. neoformans B-3501A]
gi|50258704|gb|EAL21389.1| hypothetical protein CNBD0850 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226375|gb|AAW42835.1| rRNA processing-related protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 402
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 149/223 (66%), Gaps = 39/223 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+ W + +ALE + + ELD+++G MTV TTRKTWDPYII K RD++KLL+R V
Sbjct: 71 REPYLRSVWSSITSALEAYGLACELDLVQGKMTVKTTRKTWDPYIIFKGRDLLKLLARGV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QA+++L+D I+CDIIKIG +V+NK+RFVKRRQR++GPNG TLK+IELLT CY+LVQG
Sbjct: 131 NAPQAIKILEDGIACDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VRRI+ D
Sbjct: 191 NTVSVMGSYK---------------------------------------GLKEVRRIILD 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
M NIHPIY IK LMI+RELAKDPKL NENW+RFLP F+ K L
Sbjct: 212 CMNNIHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHL 254
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++++ P+++ YL+ W + +ALE + + ELD+++G MTV TTRKTWDPY
Sbjct: 60 ESSFALLFPKYR-----EPYLRSVWSSITSALEAYGLACELDLVQGKMTVKTTRKTWDPY 114
Query: 62 IIIKARDMIKLLSRSV 77
II K RD++KLL+R V
Sbjct: 115 IIFKGRDLLKLLARGV 130
>gi|328870400|gb|EGG18774.1| hypothetical protein DFA_02513 [Dictyostelium fasciculatum]
Length = 389
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/265 (49%), Positives = 165/265 (62%), Gaps = 43/265 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S + +E+Y+KE WPLV+ L H I +LD IEG+MTV TT+K WDP I+KARD
Sbjct: 63 SFSTVFPKYREKYIKEIWPLVEKELVEHGIDCKLDFIEGTMTVVTTKKCWDPVAILKARD 122
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLLSRSVP+ A ++++DD +CDIIKIG LV+NK+RFVKRRQRLIGP+G TLKSIELL
Sbjct: 123 LIKLLSRSVPFVHAKKIMEDDNNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLKSIELL 182
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+L+QG TVA++GP GL
Sbjct: 183 TRCYVLIQGTTVASIGP---------------------------------------WDGL 203
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK----RK 309
+VR+IVED MKNIHPIYNIK LMI+REL K+ LK+E+W RF+P FK + + K
Sbjct: 204 EKVRKIVEDCMKNIHPIYNIKELMIRRELFKNDALKSEDWSRFIPKFKKRNVQSKAPAPK 263
Query: 310 MPKKRKTKSEYTPFPPPQPESEANS 334
K R S T F P + + E S
Sbjct: 264 KKKNRDAPSASTIFTPRKEDLEMES 288
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S P+++ +Y+KE WPLV+ L H I +LD IEG+MTV TT+K WDP
Sbjct: 61 ESSFSTVFPKYR-----EKYIKEIWPLVEKELVEHGIDCKLDFIEGTMTVVTTKKCWDPV 115
Query: 62 IIIKARDMIKLLSRSVPY 79
I+KARD+IKLLSRSVP+
Sbjct: 116 AILKARDLIKLLSRSVPF 133
>gi|296083097|emb|CBI22501.3| unnamed protein product [Vitis vinifera]
Length = 424
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 159/231 (68%), Gaps = 40/231 (17%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP V+ AL+ +K+EL+++EG MTV TTRKT DPYII
Sbjct: 88 MLEVSSFSTLFPQYREKYLQEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYII 147
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L D++ CDIIKIG+LV+NK+RFVKRRQ L+GPN TLK
Sbjct: 148 MKARDLIKLLSRSVPAPQAIKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLK 207
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TVAA+G K
Sbjct: 208 ALEILTGCYILVQGNTVAAMGSFK------------------------------------ 231
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
GL QVRR+VED ++N +HP+Y+IK LM+KRELA DP L+NENW+RFLP
Sbjct: 232 ---GLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLP 279
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++++ YL+E WP V+ AL+ +K+EL+++EG MTV TTRKT DPYI
Sbjct: 92 SSFSTLFPQYREK-----YLQEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYI 146
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+IKLLSRSVP
Sbjct: 147 IMKARDLIKLLSRSVP 162
>gi|405119935|gb|AFR94706.1| ribosomal RNA assembly protein mis3 [Cryptococcus neoformans var.
grubii H99]
Length = 406
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 149/223 (66%), Gaps = 39/223 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+ W + +ALE + + ELD+++G MTV TTRKTWDPYI+ K RD++KLL+R V
Sbjct: 71 REPYLRSVWSSITSALEAYGLACELDLVQGKMTVKTTRKTWDPYIVFKGRDLLKLLARGV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QA+++L+D I+CDIIKIG +V+NK+RFVKRRQR++GPNG TLK+IELLT CY+LVQG
Sbjct: 131 NAPQAIKILEDGIACDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VRRI+ D
Sbjct: 191 NTVSVMGSYK---------------------------------------GLKEVRRIILD 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
M NIHPIY IK LMI+RELAKDPKL NENW+RFLP F+ K L
Sbjct: 212 CMNNIHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHL 254
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++++ P+++ YL+ W + +ALE + + ELD+++G MTV TTRKTWDPY
Sbjct: 60 ESSFALLFPKYR-----EPYLRSVWSSITSALEAYGLACELDLVQGKMTVKTTRKTWDPY 114
Query: 62 IIIKARDMIKLLSRSV 77
I+ K RD++KLL+R V
Sbjct: 115 IVFKGRDLLKLLARGV 130
>gi|225429319|ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis
vinifera]
Length = 386
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 159/231 (68%), Gaps = 40/231 (17%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP V+ AL+ +K+EL+++EG MTV TTRKT DPYII
Sbjct: 50 MLEVSSFSTLFPQYREKYLQEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYII 109
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L D++ CDIIKIG+LV+NK+RFVKRRQ L+GPN TLK
Sbjct: 110 MKARDLIKLLSRSVPAPQAIKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLK 169
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TVAA+G K
Sbjct: 170 ALEILTGCYILVQGNTVAAMGSFK------------------------------------ 193
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
GL QVRR+VED ++N +HP+Y+IK LM+KRELA DP L+NENW+RFLP
Sbjct: 194 ---GLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLP 241
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S P+++++ YL+E WP V+ AL+ +K+EL+++EG MTV TTRKT DPYI
Sbjct: 54 SSFSTLFPQYREK-----YLQEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYI 108
Query: 63 IIKARDMIKLLSRSVP 78
I+KARD+IKLLSRSVP
Sbjct: 109 IMKARDLIKLLSRSVP 124
>gi|156085547|ref|XP_001610183.1| Ribosomal RNA assembly protein mis3 [Babesia bovis T2Bo]
gi|154797435|gb|EDO06615.1| Ribosomal RNA assembly protein mis3, putative [Babesia bovis]
Length = 342
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/249 (50%), Positives = 163/249 (65%), Gaps = 40/249 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y++ W VK AL + IK ELD++EGSM+V TT+KTWDPYIIIKARDMIKL++RSV
Sbjct: 52 REKYIQSIWGDVKRALGNYHIKCELDLVEGSMSVLTTKKTWDPYIIIKARDMIKLIARSV 111
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA R+L+D + CDI+KIG +++NK +F+KRRQRL+GP G TLK++ELLT CY+L QG
Sbjct: 112 PFHQAKRILEDGVYCDIVKIGGMLRNKDKFIKRRQRLVGPGGSTLKALELLTQCYILTQG 171
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV+ +G KG+ + RRIVED
Sbjct: 172 QTVSIIGSIKGIKIA---------------------------------------RRIVED 192
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHP+Y+IK LMIKREL KD KLK ENW+RFLP FK +++ +RK K+K KS
Sbjct: 193 CMKNIHPVYHIKELMIKRELEKDEKLKGENWDRFLPQFKKRSVKRRKTQVKKK-KSSGLL 251
Query: 323 FPPPQPESE 331
P P E
Sbjct: 252 LPEQTPRKE 260
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y++ W VK AL + IK ELD++EGSM+V TT+KTWDPYIIIKARDMIKL++RSVP+
Sbjct: 55 YIQSIWGDVKRALGNYHIKCELDLVEGSMSVLTTKKTWDPYIIIKARDMIKLIARSVPFH 114
Query: 81 PLK 83
K
Sbjct: 115 QAK 117
>gi|330801607|ref|XP_003288817.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
gi|325081153|gb|EGC34680.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
Length = 349
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 163/245 (66%), Gaps = 39/245 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E W LV+N L+ H I+ +LD+IEGSMT TT K WDP I+KARD+IKLLSRSV
Sbjct: 63 REKYLQEIWKLVENLLKDHGIECKLDLIEGSMTTTTTSKCWDPVAILKARDLIKLLSRSV 122
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+E A +++ DD +C++IKIG V+NK+RFVKRRQRL+GP+G TLK+IELLT CY+LVQG
Sbjct: 123 PFEHAQKIMLDDYNCEVIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIELLTKCYVLVQG 182
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +GP +G LLQVR+IVED
Sbjct: 183 NTVSCIGPWQG---------------------------------------LLQVRKIVED 203
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKNIHPIYNIK LMIKREL KD LK E+W++FLP FK K +K+K +K+K + P
Sbjct: 204 CMKNIHPIYNIKELMIKRELEKDESLKAESWDKFLPQFKKKNQNKKKKVQKKKKDRDAAP 263
Query: 323 FPPPQ 327
F Q
Sbjct: 264 FAQDQ 268
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 59/79 (74%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E W LV+N L+ H I+ +LD+IEGSMT TT K WDP
Sbjct: 52 ESSFATLFPKYREK-----YLQEIWKLVENLLKDHGIECKLDLIEGSMTTTTTSKCWDPV 106
Query: 62 IIIKARDMIKLLSRSVPYE 80
I+KARD+IKLLSRSVP+E
Sbjct: 107 AILKARDLIKLLSRSVPFE 125
>gi|321262677|ref|XP_003196057.1| rRNA processing-related protein [Cryptococcus gattii WM276]
gi|317462532|gb|ADV24270.1| rRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 404
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 148/223 (66%), Gaps = 39/223 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+ W + +ALE + + ELD+++G M V TTRKTWDPYI+ K RD++KLL+R V
Sbjct: 71 REPYLRSVWSSITSALEAYGLACELDLVQGKMIVKTTRKTWDPYIVFKGRDLLKLLARGV 130
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QA+++L+D I+CDIIKIG +V+NK+RFVKRRQR++GPNG TLK+IELLT CY+LVQG
Sbjct: 131 NAPQAIKILEDGIACDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQG 190
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VRRI+ D
Sbjct: 191 NTVSVMGSYK---------------------------------------GLKEVRRIILD 211
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
M NIHPIY IK LMI+RELAKDPKL NENW+RFLP F+ K L
Sbjct: 212 CMNNIHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHL 254
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++++ P+++ YL+ W + +ALE + + ELD+++G M V TTRKTWDPY
Sbjct: 60 ESSFALLFPKYR-----EPYLRSVWSSITSALEAYGLACELDLVQGKMIVKTTRKTWDPY 114
Query: 62 IIIKARDMIKLLSRSV 77
I+ K RD++KLL+R V
Sbjct: 115 IVFKGRDLLKLLARGV 130
>gi|401887035|gb|EJT51041.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 366
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/263 (47%), Positives = 161/263 (61%), Gaps = 54/263 (20%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+ W + + L+ + + LD+I G M+V TTRKTWDPYII KARD++KLL+R V
Sbjct: 75 REPYLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLARGV 134
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QA++VLQD I+CDI+KI +V+NK+RFVKRRQR++GP G TLK+IELLT+CY+LVQG
Sbjct: 135 SAPQAMKVLQDGIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLVQG 194
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VRRI+ D
Sbjct: 195 NTVSCMGSYK---------------------------------------GLKEVRRIIID 215
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL--------------SKR 308
M NIHPIY IK LMI+RELAKDPKL NE+W+RFLP F+ K L S
Sbjct: 216 CMHNIHPIYRIKELMIRRELAKDPKLANESWDRFLPKFQKKHLKTSEKTAKKNAAAGSAA 275
Query: 309 KMPKKRKTKSEYTPFPPPQPESE 331
P K+K K YTPFPP +S+
Sbjct: 276 GEPAKKKAKV-YTPFPPAPAQSK 297
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++++ P++++ YL+ W + + L+ + + LD+I G M+V TTRKTWDPY
Sbjct: 64 ESSFTLLFPKYREP-----YLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPY 118
Query: 62 IIIKARDMIKLLSRSV 77
II KARD++KLL+R V
Sbjct: 119 IIFKARDLLKLLARGV 134
>gi|406695196|gb|EKC98508.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 8904]
Length = 366
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/263 (47%), Positives = 161/263 (61%), Gaps = 54/263 (20%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YL+ W + + L+ + + LD+I G M+V TTRKTWDPYII KARD++KLL+R V
Sbjct: 75 REPYLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLARGV 134
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
QA++VLQD I+CDI+KI +V+NK+RFVKRRQR++GP G TLK+IELLT+CY+LVQG
Sbjct: 135 SAPQAMKVLQDGIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLVQG 194
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G +K GL +VRRI+ D
Sbjct: 195 NTVSCMGSYK---------------------------------------GLKEVRRIIID 215
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL--------------SKR 308
M NIHPIY IK LMI+RELAKDPKL NE+W+RFLP F+ K L S
Sbjct: 216 CMHNIHPIYRIKELMIRRELAKDPKLANESWDRFLPKFQKKHLKTSEKTAKKNAAAGSAA 275
Query: 309 KMPKKRKTKSEYTPFPPPQPESE 331
P K+K K YTPFPP +S+
Sbjct: 276 GEPAKKKAKV-YTPFPPAPAQSK 297
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++++ P++++ YL+ W + + L+ + + LD+I G M+V TTRKTWDPY
Sbjct: 64 ESSFALLFPKYREP-----YLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPY 118
Query: 62 IIIKARDMIKLLSRSV 77
II KARD++KLL+R V
Sbjct: 119 IIFKARDLLKLLARGV 134
>gi|195350218|ref|XP_002041638.1| GM16638 [Drosophila sechellia]
gi|194123411|gb|EDW45454.1| GM16638 [Drosophila sechellia]
Length = 314
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/333 (43%), Positives = 176/333 (52%), Gaps = 118/333 (35%)
Query: 1 MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
++NAW++KIP F++EDNPH
Sbjct: 16 VDNAWALKIPAFRQEDNPH----------------------------------------- 34
Query: 61 YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
M++ S + + +E YLKE WPLV+ L H +KAELD++EGSM V T+R
Sbjct: 35 -------GMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVRTSR 87
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
KTWDPYIIIKARDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV ++R
Sbjct: 88 KTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHRRRR--------- 138
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
TV+ALGP+KG
Sbjct: 139 ----------------------NTVSALGPYKG--------------------------- 149
Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
L QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 150 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKF 197
Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
K+K +SKRK PK +K K EYTPFPP QPES+ +
Sbjct: 198 KNKNISKRKQPKVKKQKKEYTPFPPSQPESKVD 230
>gi|281202375|gb|EFA76580.1| hypothetical protein PPL_10349 [Polysphondylium pallidum PN500]
Length = 368
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 151/228 (66%), Gaps = 39/228 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S + +E+Y+KE WPLV+ L H I +LD+I+GSM+V TT+K WDP I+KARD
Sbjct: 58 SFSTLFPKYREKYIKEIWPLVEKELNEHGIVCKLDLIDGSMSVTTTKKCWDPVAILKARD 117
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+I+LLSRSVP+ A R++ D+ +CDIIKIG V+NK+RFVKRRQRLIGP+G TLKSIELL
Sbjct: 118 LIRLLSRSVPFHHAKRIMLDENNCDIIKIGGSVRNKERFVKRRQRLIGPDGATLKSIELL 177
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TVA++GP GLLQ N
Sbjct: 178 TRCYVLVQGTTVASIGPWDGLLQVN----------------------------------- 202
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
+IVED MKNIHPIYNIK +MI+REL KD LK E+W+RF+P FK
Sbjct: 203 ----KIVEDCMKNIHPIYNIKEMMIRRELMKDESLKTESWDRFIPKFK 246
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 5/88 (5%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S P+++++ Y+KE WPLV+ L H I +LD+I+GSM+V TT+K WDP
Sbjct: 56 ESSFSTLFPKYREK-----YIKEIWPLVEKELNEHGIVCKLDLIDGSMSVTTTKKCWDPV 110
Query: 62 IIIKARDMIKLLSRSVPYEPLKEEYLKE 89
I+KARD+I+LLSRSVP+ K L E
Sbjct: 111 AILKARDLIRLLSRSVPFHHAKRIMLDE 138
>gi|303271267|ref|XP_003054995.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462969|gb|EEH60247.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 306
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/246 (52%), Positives = 164/246 (66%), Gaps = 39/246 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V AL+ I EL+++EGSMTV TTRKT+DPYIIIK+RD+IKLLSRSV
Sbjct: 47 REKYLREVWPSVTRALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSV 106
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L DD+ CD+IKIG +V+NK+R+VKRRQRLIGPNG TLK+IE+LT CY+LVQG
Sbjct: 107 PAPQALKILSDDVQCDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTGCYVLVQG 166
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G KGL VR+I+ED
Sbjct: 167 NTVSCMG---------------------------------------GWKGLKTVRKIIED 187
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
MKN+HPIY+IK LMIKRELAKDP L +++W+RFLP FK K + ++K K K K +
Sbjct: 188 CMKNMHPIYHIKELMIKRELAKDPALASQSWDRFLPKFKKKNVKRKKPSKIGKGKKDQVF 247
Query: 323 FPPPQP 328
P P P
Sbjct: 248 PPAPVP 253
>gi|449444252|ref|XP_004139889.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 350
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 157/231 (67%), Gaps = 40/231 (17%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL++ WP+VK+AL+ I EL++IEGSMTV TTRKT DPYII
Sbjct: 18 MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYII 77
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L D++ CDIIKIGNLV+ K+RFVKRR+ L+GPN TLK
Sbjct: 78 VKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLK 137
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TVAA+G KG
Sbjct: 138 ALEILTGCYILVQGNTVAAMGSFKG----------------------------------- 162
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
L QVRR+VE+ M N +HP+YNIK LM+++ELA DP L NENW+RFLP
Sbjct: 163 ----LKQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLP 209
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 51/60 (85%)
Query: 19 HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
+YL++ WP+VK+AL+ I EL++IEGSMTV TTRKT DPYII+KARD+IKLLSRSVP
Sbjct: 33 EKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 92
>gi|403271962|ref|XP_003927865.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Saimiri boliviensis boliviensis]
Length = 331
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 149/217 (68%), Gaps = 42/217 (19%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+I+LL+RSV YEQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIRLLARSVSYEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
GL +VR++V DTMKNIHPIYNIK I +ELA
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIK---IDKELA 226
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+I+LL+RSV YE
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSYE 130
>gi|449019223|dbj|BAM82625.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Cyanidioschyzon
merolae strain 10D]
Length = 351
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/251 (52%), Positives = 165/251 (65%), Gaps = 46/251 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL++ WPLV L+ I EL++IEG+MTV TTRKT+DP+ + +ARD IKLL+RSV
Sbjct: 66 REQYLRQIWPLVTQHLQKTGIACELNLIEGTMTVRTTRKTYDPFAVFRARDFIKLLARSV 125
Query: 143 PYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQ 201
P +QA R+L D+ + CDIIKI V+++ RF++RR+RLIGPNG TLK+IELLTNCY+LVQ
Sbjct: 126 PVQQAARILYDEKLYCDIIKISGYVRSRDRFLRRRERLIGPNGSTLKAIELLTNCYVLVQ 185
Query: 202 GQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVE 261
G TVAA+G HK GL QVRRIVE
Sbjct: 186 GNTVAAMGDHK---------------------------------------GLKQVRRIVE 206
Query: 262 DTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE-- 319
+ M+N+HPIYNIK LMIKRELAKDP+L ENWERFLP FK + KR+ K + + E
Sbjct: 207 ECMQNVHPIYNIKRLMIKRELAKDPELAKENWERFLPQFKKRN-QKRRRGKHQTDQQEGG 265
Query: 320 ---YTPFPPPQ 327
Y PFPPPQ
Sbjct: 266 SKAYEPFPPPQ 276
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P ++++ YL++ WPLV L+ I EL++IEG+MTV TTRKT+DP+
Sbjct: 55 ESSFATLFPAYREQ-----YLRQIWPLVTQHLQKTGIACELNLIEGTMTVRTTRKTYDPF 109
Query: 62 IIIKARDMIKLLSRSVP 78
+ +ARD IKLL+RSVP
Sbjct: 110 AVFRARDFIKLLARSVP 126
>gi|340504633|gb|EGR31059.1| ribosomal RNA assembly, putative [Ichthyophthirius multifiliis]
Length = 359
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/268 (48%), Positives = 172/268 (64%), Gaps = 44/268 (16%)
Query: 64 IKARDMIKLLSRSVPYEPL----KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 119
K DM LS + L +E+Y++E + +K L + IKA+L++ EGS+TV TT
Sbjct: 37 FKKGDMPYTLSEESSFATLFPQYREKYIQESFGNIKKTLNDYGIKADLNLTEGSITVRTT 96
Query: 120 RKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRL 179
+KTWDPY IIKARD IKLL+RSVP++QA+RV++D + D++KI NLV+NK++F+KRRQRL
Sbjct: 97 KKTWDPYAIIKARDCIKLLARSVPFQQALRVMEDGVFSDVVKIRNLVRNKEKFIKRRQRL 156
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLV 239
IGPNG TLK++ELLT CY++VQG TV
Sbjct: 157 IGPNGQTLKALELLTECYIMVQGSTV---------------------------------- 182
Query: 240 QGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPN 299
+ +G K L +RRI+EDTM NIHPIYNIK LMIK+EL KD KLK+ENW+RFLP
Sbjct: 183 -----SCIGGWKQLKVLRRIIEDTMHNIHPIYNIKELMIKKELMKDDKLKDENWDRFLPQ 237
Query: 300 FKSKTLSKRKMPKKRKTKSEYTPFPPPQ 327
FK K++ K++ K EYTPFPP Q
Sbjct: 238 FKKINAKKKQK-KQKVQKKEYTPFPPEQ 264
>gi|449493026|ref|XP_004159171.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 379
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 157/231 (67%), Gaps = 40/231 (17%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL++ WP+VK+AL+ I EL++IEGSMTV TTRKT DPYII
Sbjct: 47 MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYII 106
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+KARD+IKLLSRSVP QA+++L D++ CDIIKIGNLV+ K+RFVKRR+ L+GPN TLK
Sbjct: 107 VKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLK 166
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
++E+LT CY+LVQG TVAA+G KG
Sbjct: 167 ALEILTGCYILVQGNTVAAMGSFKG----------------------------------- 191
Query: 249 PHKGLLQVRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
L QVRR+VE+ M N +HP+YNIK LM+++ELA DP L NENW+RFLP
Sbjct: 192 ----LKQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLP 238
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 51/60 (85%)
Query: 19 HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
+YL++ WP+VK+AL+ I EL++IEGSMTV TTRKT DPYII+KARD+IKLLSRSVP
Sbjct: 62 EKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 121
>gi|410965128|ref|XP_003989104.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Felis catus]
Length = 324
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 149/217 (68%), Gaps = 42/217 (19%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
GL +VR++V DTMKNIHPIYNIK I +ELA
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIK---IDKELA 226
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|335288274|ref|XP_003355571.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Sus scrofa]
Length = 318
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 149/217 (68%), Gaps = 42/217 (19%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 46 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 105
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 106 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 165
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 166 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 189
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
GL +VR++V DTMKNIHPIYNIK I +ELA
Sbjct: 190 ---FSGLKEVRKVVLDTMKNIHPIYNIK---IDKELA 220
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 32 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 89
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 90 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 124
>gi|159465269|ref|XP_001690845.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279531|gb|EDP05291.1| predicted protein [Chlamydomonas reinhardtii]
Length = 319
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 148/226 (65%), Gaps = 49/226 (21%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRS- 141
+E+YL+E WP V AL+ I EL+++EGSMTV TTRKTWDPY IIKARD+IKLL+RS
Sbjct: 44 REKYLREVWPAVTKALKDMGIGCELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSE 103
Query: 142 VPYEQ---------AVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIEL 192
VP ++ QDD+ CDIIKI +++NK++FVKRRQRLIGPNG TLK++EL
Sbjct: 104 VPSADVLSACALAVSISTQQDDMQCDIIKISGIIRNKEKFVKRRQRLIGPNGSTLKALEL 163
Query: 193 LTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKG 252
LT CYMLVQG TV+A+GP+K G
Sbjct: 164 LTGCYMLVQGNTVSAMGPYK---------------------------------------G 184
Query: 253 LLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
L Q+RRIVED +KN+HPIY+IK LMIKRELAKDP L ENW+RFLP
Sbjct: 185 LKQLRRIVEDCIKNVHPIYHIKTLMIKRELAKDPALAEENWDRFLP 230
>gi|395744608|ref|XP_003778133.1| PREDICTED: KRR1 small subunit processome component homolog [Pongo
abelii]
Length = 324
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 149/217 (68%), Gaps = 42/217 (19%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
GL +VR++V DTMKNIHPIYNIK I +ELA
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIK---IDKELA 226
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|145542859|ref|XP_001457116.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424931|emb|CAK89719.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/245 (49%), Positives = 168/245 (68%), Gaps = 42/245 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y++E + +VK +++ H I+AEL+++EGS+TV TT KTWDP+ I+KARD+IKLL+RSV
Sbjct: 57 REKYIQEVFGMVKKSMKDHGIRAELNLMEGSLTVKTTNKTWDPWAIMKARDIIKLLARSV 116
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P +Q +R+L+D CDIIKI + +NK++FVKRRQRLIGPNG TLK++ELLT+CY++VQG
Sbjct: 117 PVQQCLRLLEDGTFCDIIKIRSYTRNKEKFVKRRQRLIGPNGATLKALELLTDCYIMVQG 176
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+ +G N LK+ VR++V D
Sbjct: 177 STVSVIG------------NWKNLKT---------------------------VRKVVVD 197
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TM+N+HPIY+IK LMIKREL+KD ++NENW+RFLP+FK + +K K K K EYTP
Sbjct: 198 TMQNVHPIYSIKELMIKRELSKDENMQNENWDRFLPHFKKQN---QKRKKVIKKKKEYTP 254
Query: 323 FPPPQ 327
FPP Q
Sbjct: 255 FPPEQ 259
>gi|296212422|ref|XP_002752823.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Callithrix jacchus]
Length = 323
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 149/217 (68%), Gaps = 42/217 (19%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALIEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+I+LL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIRLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
GL +VR++V DTMKNIHPIYNIK I +ELA
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIK---IDKELA 226
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALIEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+I+LL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSFE 130
>gi|71031110|ref|XP_765197.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352153|gb|EAN32914.1| hypothetical protein, conserved [Theileria parva]
Length = 349
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 147/218 (67%), Gaps = 39/218 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y++ W VKN L + I ELD++EGSMTV TT KTWDPYIIIKARD+IKLL+RSV
Sbjct: 53 REKYIQSVWGDVKNCLSQYHINCELDLLEGSMTVITTDKTWDPYIIIKARDLIKLLARSV 112
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA R+L D + CDIIKIG L++NK +F+KRRQRL+GP G TLK++ELLT CY+L QG
Sbjct: 113 PFPQAKRILDDGVYCDIIKIGGLIRNKDKFIKRRQRLVGPGGSTLKALELLTECYILTQG 172
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV+ +G SI KG+ VR+IVED
Sbjct: 173 QTVSVIG------------------SI---------------------KGIKTVRKIVED 193
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
+ NIHP+Y IK L+IKREL+K+ KLKNENW+RFLP F
Sbjct: 194 CIYNIHPVYYIKELIIKRELSKNEKLKNENWDRFLPQF 231
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P+++++ Y++ W VKN L + I ELD++EGSMTV TT KTWDPY
Sbjct: 42 ESSFRILFPKYREK-----YIQSVWGDVKNCLSQYHINCELDLLEGSMTVITTDKTWDPY 96
Query: 62 IIIKARDMIKLLSRSVPY 79
IIIKARD+IKLL+RSVP+
Sbjct: 97 IIIKARDLIKLLARSVPF 114
>gi|397526020|ref|XP_003832939.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Pan paniscus]
Length = 324
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 148/217 (68%), Gaps = 42/217 (19%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+L DD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILHDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
GL +VR++V DTMKNIHPIYNIK I +ELA
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIK---IDKELA 226
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|432096558|gb|ELK27205.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 273
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 145/209 (69%), Gaps = 39/209 (18%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDDI+CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKA 275
GL +VR++V DTMKNIHPIYNIK+
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIKS 221
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|116292726|gb|ABJ97679.1| HRB2 variant B [Homo sapiens]
Length = 324
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 148/217 (68%), Gaps = 42/217 (19%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKR QRL+GP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRGQRLVGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
GL +VR++V DTMKNIHPIYNIK I +ELA
Sbjct: 196 ---FSGLKEVRKVVLDTMKNIHPIYNIK---IDKELA 226
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|167379708|ref|XP_001735249.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902848|gb|EDR28568.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 255
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 164/264 (62%), Gaps = 51/264 (19%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S+ + +E YLK W ++ AL+ +K ELD+++G MTV TTRKTWDP+IIIKARD
Sbjct: 27 SFSILFPKYREAYLKGMWYVINKALDEVCLKGELDLVKGIMTVKTTRKTWDPFIIIKARD 86
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
M+KLLSR VP ++AV+VLQD CDIIKIGN+++NK+RFVKRRQRL+GPNG T K+IE+L
Sbjct: 87 MLKLLSRGVPAQEAVKVLQDQYWCDIIKIGNMIKNKERFVKRRQRLVGPNGATQKAIEIL 146
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T C++L+QG+TV+ +G P+G +
Sbjct: 147 TGCFILIQGKTVSVIG----------SPSGIKM--------------------------- 169
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK------ 307
VR+IVED M NIHPIYNIKALMIK+EL K+ +KNE+W R++P + K +K
Sbjct: 170 --VRKIVEDCMDNIHPIYNIKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKE 227
Query: 308 ------RKMPKKRKTKSEYTPFPP 325
K + K Y+PFPP
Sbjct: 228 IKKKKKELKKKIIEKKKNYSPFPP 251
>gi|67478464|ref|XP_654627.1| RNA-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|56471694|gb|EAL49241.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449701660|gb|EMD42436.1| RNA-binding protein, putative [Entamoeba histolytica KU27]
Length = 255
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 164/264 (62%), Gaps = 51/264 (19%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S+ + +E YLK W ++ AL+ +K ELD+++G MTV TTRKTWDP+IIIKARD
Sbjct: 27 SFSILFPKYRESYLKGMWYVINKALDEVCLKGELDLVKGIMTVKTTRKTWDPFIIIKARD 86
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
M+KLLSR VP ++A++VLQD CDIIKIGN+++NK+RFVKRRQRL+GPNG T K+IE+L
Sbjct: 87 MLKLLSRGVPAQEAIKVLQDQYWCDIIKIGNMIKNKERFVKRRQRLVGPNGATQKAIEIL 146
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T C++L+QG+TV+ +G P+G +
Sbjct: 147 TGCFILIQGKTVSVIG----------SPSGIKM--------------------------- 169
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK------ 307
VR+IVED M NIHPIYNIKALMIK+EL K+ +KNE+W R++P + K +K
Sbjct: 170 --VRKIVEDCMDNIHPIYNIKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKE 227
Query: 308 ------RKMPKKRKTKSEYTPFPP 325
K + K Y+PFPP
Sbjct: 228 IKKKKKELKKKIIEKKKNYSPFPP 251
>gi|407039095|gb|EKE39456.1| RNA-binding protein, putative [Entamoeba nuttalli P19]
Length = 255
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 164/264 (62%), Gaps = 51/264 (19%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S+ + +E YLK W ++ AL+ +K ELD+++G MTV TTRKTWDP+IIIKARD
Sbjct: 27 SFSILFPKYREAYLKGMWYVINKALDEVCLKGELDLVKGIMTVKTTRKTWDPFIIIKARD 86
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
M+KLLSR VP ++A++VLQD CDIIKIGN+++NK+RFVKRRQRL+GPNG T K+IE+L
Sbjct: 87 MLKLLSRGVPAQEAIKVLQDQYWCDIIKIGNMIKNKERFVKRRQRLVGPNGATQKAIEIL 146
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T C++L+QG+TV+ +G P+G +
Sbjct: 147 TGCFILIQGKTVSVIG----------SPSGIKM--------------------------- 169
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK------ 307
VR+IVED M NIHPIYNIKALMIK+EL K+ +KNE+W R++P + K +K
Sbjct: 170 --VRKIVEDCMDNIHPIYNIKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKE 227
Query: 308 ------RKMPKKRKTKSEYTPFPP 325
K + K Y+PFPP
Sbjct: 228 IKKKKKELKKKIIEKKKNYSPFPP 251
>gi|84994724|ref|XP_952084.1| ribosomal RNA assembly protein [Theileria annulata strain Ankara]
gi|65302245|emb|CAI74352.1| ribosomal RNA assembly protein, putative [Theileria annulata]
Length = 355
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 151/226 (66%), Gaps = 44/226 (19%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y++ W VK L + I ELD++EGSMTV TT KTWDPYIIIKARD+IKLL+RSV
Sbjct: 53 REKYIQSVWGDVKRCLSQYHINCELDLLEGSMTVITTNKTWDPYIIIKARDLIKLLARSV 112
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QA R+L+D + CDIIKIG L++NK++F+KRRQRL+GP G TLK++ELLT CY+L QG
Sbjct: 113 PFPQAKRILEDGVYCDIIKIGGLIRNKEKFIKRRQRLVGPGGSTLKALELLTECYILTQG 172
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
QTV+A+G SI KG+ VR+IVED
Sbjct: 173 QTVSAIG------------------SI---------------------KGIKTVRKIVED 193
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKN-----ENWERFLPNFKSK 303
+ NIHP+Y IK L+IKREL K+ KLKN ENW+RFLP+FK +
Sbjct: 194 CIYNIHPVYYIKELIIKRELNKNEKLKNVPNPIENWDRFLPHFKKR 239
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P+++ +Y++ W VK L + I ELD++EGSMTV TT KTWDPY
Sbjct: 42 ESSFRILFPKYR-----EKYIQSVWGDVKRCLSQYHINCELDLLEGSMTVITTNKTWDPY 96
Query: 62 IIIKARDMIKLLSRSVPY 79
IIIKARD+IKLL+RSVP+
Sbjct: 97 IIIKARDLIKLLARSVPF 114
>gi|335775912|gb|AEH58730.1| KRR1 small subunit processome component-like protein [Equus
caballus]
Length = 220
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 144/208 (69%), Gaps = 39/208 (18%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLK+CWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKDCWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAVR+LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++ELLTNCY++VQG TV+A+GP
Sbjct: 172 LKALELLTNCYIMVQGNTVSAIGP------------------------------------ 195
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIK 274
GL +VR++V DTMKNIHPIYNIK
Sbjct: 196 ---FNGLKEVRKVVLDTMKNIHPIYNIK 220
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F +EDNP YLK+CWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSREDNPRGLLEESSFATLFPKYREAYLKDCWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|68531923|ref|XP_723647.1| RNA-binding protein [Plasmodium yoelii yoelii 17XNL]
gi|23478009|gb|EAA15212.1| RNA-binding protein [Plasmodium yoelii yoelii]
Length = 301
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 164/256 (64%), Gaps = 41/256 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S + + +E+YL++ +KN L HFIK E+++IEG MTV TT+KT+DPYIIIKARD
Sbjct: 49 SFKILFPKYREKYLQQFSTDIKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARD 108
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
MI LLSRSVPY A RVL D+I CDIIKI ++NK +F+KRRQRL+G N TLK++E+L
Sbjct: 109 MISLLSRSVPYNHAKRVLNDEIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEIL 168
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+ V G+TV +G KS+++
Sbjct: 169 TQCYICVHGKTVCVIG---------------NFKSLKI---------------------- 191
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
VRRIV D MKNIHP+Y+IK L+ KREL K+ +LKNENWE++LPNFK + + ++K+ +K
Sbjct: 192 --VRRIVIDCMKNIHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQRKKIKQK 249
Query: 314 RKTKS--EYTPFPPPQ 327
+ K+ + + FPP Q
Sbjct: 250 LENKNGKKKSVFPPDQ 265
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 62/99 (62%), Gaps = 17/99 (17%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKEC-----WPL------------VKNALELHFIKAELDV 44
EN KI +F KEDN H +L+E +P +KN L HFIK E+++
Sbjct: 25 ENIDHWKIEKFTKEDNKHHFLEESSFKILFPKYREKYLQQFSTDIKNTLHNHFIKFEINL 84
Query: 45 IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
IEG MTV TT+KT+DPYIIIKARDMI LLSRSVPY K
Sbjct: 85 IEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAK 123
>gi|125527474|gb|EAY75588.1| hypothetical protein OsI_03494 [Oryza sativa Indica Group]
Length = 421
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 164/243 (67%), Gaps = 42/243 (17%)
Query: 86 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 145
YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYIIIKA ++IKLLSRSVP
Sbjct: 99 YLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAP 158
Query: 146 QAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
QA+++L D++SC IIKIG++++NK+RFVKRR RL+GPN TLK+IE+LT CY+LVQG T
Sbjct: 159 QAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTA 218
Query: 206 AALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMK 265
AA+G K GL QV R+VED +K
Sbjct: 219 AAMGYWK---------------------------------------GLKQVVRVVEDCIK 239
Query: 266 NI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFP 324
N+ HP+Y+IK L+IKRELAK+P L +E+W++FLP FK K + ++K K K +YTPFP
Sbjct: 240 NVKHPVYHIKELLIKRELAKNPALAHESWDKFLPKFKKKNVKQKK--PLTKEKKQYTPFP 297
Query: 325 PPQ 327
PPQ
Sbjct: 298 PPQ 300
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYIIIKA ++IKLLSRSVP
Sbjct: 99 YLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVP 156
>gi|313246422|emb|CBY35332.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 156/243 (64%), Gaps = 41/243 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WPLV+ L +F+K ELD+IEGSMTV TT+KTWDPY II ARD+IKLL+RSV
Sbjct: 45 REKYLKEVWPLVEKFLTPYFLKCELDLIEGSMTVKTTKKTWDPYSIINARDLIKLLARSV 104
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYE AV+ D+ + +++KI LV+N +RF KRRQRLIGP G TLK +E LT CY+ VQG
Sbjct: 105 PYEHAVKCFDDENAVEVVKIKGLVRNLERFAKRRQRLIGPEGQTLKCVEYLTGCYINVQG 164
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GPH +GL + R+IV D
Sbjct: 165 GTVAIIGPH---------------------------------------RGLKECRKIVVD 185
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TM N HP +NI+ LMIKRE AK+P L+NENW RFLP +KSK + K K K K EYTP
Sbjct: 186 TMNNKHPAHNIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKK--DIKEKKEYTP 243
Query: 323 FPP 325
FPP
Sbjct: 244 FPP 246
>gi|313229458|emb|CBY18272.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 156/243 (64%), Gaps = 41/243 (16%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YLKE WPLV+ L +F+K ELD+IEGSMTV TT+KTWDPY II ARD+IKLL+RSV
Sbjct: 45 REKYLKEVWPLVEKFLTPYFLKCELDLIEGSMTVKTTKKTWDPYSIINARDLIKLLARSV 104
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
PYE AV+ D+ + +++KI LV+N +RF KRRQRLIGP G TLK +E LT CY+ VQG
Sbjct: 105 PYEHAVKCFDDENAVEVVKIKGLVRNLERFAKRRQRLIGPEGQTLKCVEYLTGCYINVQG 164
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +GPH +GL + R+IV D
Sbjct: 165 GTVAIIGPH---------------------------------------RGLKECRKIVVD 185
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
TM N HP +NI+ LMIKRE AK+P L+NENW RFLP +KSK + K K K K EYTP
Sbjct: 186 TMNNKHPAHNIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKK--DIKEKKEYTP 243
Query: 323 FPP 325
FPP
Sbjct: 244 FPP 246
>gi|68069899|ref|XP_676861.1| RNA-binding protein [Plasmodium berghei strain ANKA]
gi|56496746|emb|CAH98323.1| RNA-binding protein, putative [Plasmodium berghei]
Length = 291
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 160/249 (64%), Gaps = 41/249 (16%)
Query: 81 PLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSR 140
P EYL++ +KN L HFIK E+++IEG MTV TT+KT+DPYIIIKARDMI LLSR
Sbjct: 55 PKYREYLQQFSTDIKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSR 114
Query: 141 SVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLV 200
SVPY A RVL D+I CDIIKI ++NK +F+KRRQRL+G N TLK++E+LT CY+ V
Sbjct: 115 SVPYNHAKRVLDDEIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICV 174
Query: 201 QGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIV 260
G+TV +G KS+++ VRRIV
Sbjct: 175 HGKTVCVIG---------------NFKSLKI------------------------VRRIV 195
Query: 261 EDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKS-- 318
D MKNIHP+Y+IK L+ KREL K+ +LKNENWE++LPNFK + + ++K+ +K + K+
Sbjct: 196 IDCMKNIHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQRKKIKQKLENKNGK 255
Query: 319 EYTPFPPPQ 327
+ + FPP Q
Sbjct: 256 KKSVFPPDQ 264
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 61/98 (62%), Gaps = 16/98 (16%)
Query: 2 ENAWSMKIPEFKKEDNPH----------------EYLKECWPLVKNALELHFIKAELDVI 45
EN KI +F KEDN H EYL++ +KN L HFIK E+++I
Sbjct: 25 ENIDHWKIEKFTKEDNKHHFLEESSFKILFPKYREYLQQFSTDIKNTLHNHFIKFEINLI 84
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
EG MTV TT+KT+DPYIIIKARDMI LLSRSVPY K
Sbjct: 85 EGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAK 122
>gi|403412462|emb|CCL99162.1| predicted protein [Fibroporia radiculosa]
Length = 294
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 149/240 (62%), Gaps = 65/240 (27%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
M+V TTRKT+DPYII+KARDMIKLL+R V QAV++L D ++CDI+KIGNLV+NK+RFV
Sbjct: 1 MSVRTTRKTFDPYIILKARDMIKLLARGVAAGQAVKILDDGVACDIVKIGNLVRNKERFV 60
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRRQR+IGP+G TLK+IELLT CY+LVQG TV+ +GP+K
Sbjct: 61 KRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYK--------------------- 99
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENW 293
GL +VRRI+ D MKNIHPIY IK LMIKRELAKDP+L NE+W
Sbjct: 100 ------------------GLKEVRRIILDCMKNIHPIYRIKELMIKRELAKDPQLVNESW 141
Query: 294 ERFLPNFKSKTL-----SKRK---------------------MPKKRKTKSEYTPFPPPQ 327
+RFLP F+ L ++RK K ++TK YTPFPPPQ
Sbjct: 142 DRFLPKFRRHHLKTSEKTERKNDRLKDKNEARKAAGLEPIGPGSKGQQTKKVYTPFPPPQ 201
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSV 77
M+V TTRKT+DPYII+KARDMIKLL+R V
Sbjct: 1 MSVRTTRKTFDPYIILKARDMIKLLARGV 29
>gi|56785318|dbj|BAD82278.1| rev protein (42.9 kD)-like [Oryza sativa Japonica Group]
gi|125571797|gb|EAZ13312.1| hypothetical protein OsJ_03235 [Oryza sativa Japonica Group]
Length = 421
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 163/243 (67%), Gaps = 42/243 (17%)
Query: 86 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 145
YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYIIIKA ++IKLLSRSVP
Sbjct: 99 YLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAP 158
Query: 146 QAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
QA+++L D++SC IIKIG++++NK+RFVKRR RL+GPN TLK+IE+LT CY+LVQG T
Sbjct: 159 QAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTA 218
Query: 206 AALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMK 265
AA+G K GL QV R+VED +K
Sbjct: 219 AAMGYWK---------------------------------------GLKQVVRVVEDCIK 239
Query: 266 NI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFP 324
N+ HP+Y+IK L+IKREL K+P L +E+W++FLP FK K + ++K K K +YTPFP
Sbjct: 240 NVKHPVYHIKELLIKRELVKNPALAHESWDKFLPKFKKKNVKQKK--PLTKEKKQYTPFP 297
Query: 325 PPQ 327
PPQ
Sbjct: 298 PPQ 300
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYIIIKA ++IKLLSRSVP
Sbjct: 99 YLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVP 156
>gi|392575468|gb|EIW68601.1| hypothetical protein TREMEDRAFT_31674 [Tremella mesenterica DSM
1558]
Length = 395
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 167/295 (56%), Gaps = 74/295 (25%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S+ + +E L+ W + + L+ + ELD+++G MTV TTRKTWDPY+++K RD
Sbjct: 73 SFSLLFPKYREPKLRTWWGEITSKLKTVELDCELDLVQGKMTVKTTRKTWDPYVVLKGRD 132
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
M+KLL+R V Q ++LQDDI+CD+I IG LV+NK+RFVKRR R++GPNG TLK+IELL
Sbjct: 133 MLKLLARGVDPPQVYKILQDDIACDVIPIGGLVRNKERFVKRRARILGPNGSTLKAIELL 192
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TV+A+G +K GL
Sbjct: 193 TECYVLVQGNTVSAMGSYK---------------------------------------GL 213
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL-----SKR 308
+VRRI+ D M NIHPIY IK LMI+RELAKDPKL NENW+RFLP F+ + L + R
Sbjct: 214 KEVRRIIVDCMNNIHPIYRIKELMIRRELAKDPKLVNENWDRFLPKFQKRHLKTSEKTAR 273
Query: 309 KMPK------------------------------KRKTKSEYTPFPPPQPESEAN 333
K K ++ K YTPFPPPQ S+ +
Sbjct: 274 KNAKLSHPQLNNTNPNAIVIQNDESSQSSQLKTTEKPKKKIYTPFPPPQQPSKLD 328
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S+ P++++ L+ W + + L+ + ELD+++G MTV TTRKTWDPY
Sbjct: 71 ESSFSLLFPKYREPK-----LRTWWGEITSKLKTVELDCELDLVQGKMTVKTTRKTWDPY 125
Query: 62 IIIKARDMIKLLSRSV 77
+++K RDM+KLL+R V
Sbjct: 126 VVLKGRDMLKLLARGV 141
>gi|297720351|ref|NP_001172537.1| Os01g0713700 [Oryza sativa Japonica Group]
gi|255673619|dbj|BAH91267.1| Os01g0713700 [Oryza sativa Japonica Group]
Length = 461
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 163/243 (67%), Gaps = 42/243 (17%)
Query: 86 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 145
YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYIIIKA ++IKLLSRSVP
Sbjct: 99 YLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAP 158
Query: 146 QAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
QA+++L D++SC IIKIG++++NK+RFVKRR RL+GPN TLK+IE+LT CY+LVQG T
Sbjct: 159 QAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTA 218
Query: 206 AALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMK 265
AA+G K GL QV R+VED +K
Sbjct: 219 AAMGYWK---------------------------------------GLKQVVRVVEDCIK 239
Query: 266 NI-HPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFP 324
N+ HP+Y+IK L+IKREL K+P L +E+W++FLP FK K + ++K K K +YTPFP
Sbjct: 240 NVKHPVYHIKELLIKRELVKNPALAHESWDKFLPKFKKKNVKQKK--PLTKEKKQYTPFP 297
Query: 325 PPQ 327
PPQ
Sbjct: 298 PPQ 300
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
YL+E WP+VK AL+ + EL+++EGSMTV TTRKT DPYIIIKA ++IKLLSRSVP
Sbjct: 99 YLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVP 156
>gi|323349604|gb|EGA83823.1| Krr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 217
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/206 (55%), Positives = 141/206 (68%), Gaps = 39/206 (18%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK W V AL+ H I LD++EGSMTV TTRKT+DP II+KARD+IKLL+RSV
Sbjct: 49 RESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSV 108
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P+ QAV++LQDD++CD+IKIGN V NK+RFVKRRQRL+GPNG TLK++ELLT CY+LVQG
Sbjct: 109 PFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQG 168
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+GP K GL +VRR+VED
Sbjct: 169 NTVSAMGPFK---------------------------------------GLKEVRRVVED 189
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKL 288
MKNIHPIY+IK LMIKRELAK ++
Sbjct: 190 CMKNIHPIYHIKELMIKRELAKXARV 215
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 19/91 (20%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGS 79
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP II+KARD+IKLL+RSVP+
Sbjct: 80 MTVKTTRKTYDPAIILKARDLIKLLARSVPF 110
>gi|323456010|gb|EGB11877.1| hypothetical protein AURANDRAFT_12957, partial [Aureococcus
anophagefferens]
Length = 272
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 165/251 (65%), Gaps = 40/251 (15%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E Y++E WP+V L + EL++IEGSMTV TTRKT DPY+I+KARD+IKLL+RS+
Sbjct: 45 REGYIREAWPIVTRTLGKVGVACELNLIEGSMTVATTRKTSDPYVILKARDLIKLLARSI 104
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L D + CD+IKIG LV+N+ RFV+RRQRL+GP+G TLK++ELLT CY+LVQG
Sbjct: 105 PAAQAMKILDDGVHCDVIKIGGLVRNRDRFVRRRQRLVGPDGATLKALELLTECYVLVQG 164
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TVA +G G+ KGL R++VE+
Sbjct: 165 NTVACMG---GI------------------------------------KGLKTCRKVVEE 185
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTP 322
+N+HPIYNIK LMIKRELA DP+LK E+WERFLP F K + +K K R TK+ YTP
Sbjct: 186 CFRNVHPIYNIKILMIKRELANDPELKEEDWERFLPKFAKKNVQTKKPLKTRPTKA-YTP 244
Query: 323 FPPPQPESEAN 333
FPP Q S+ +
Sbjct: 245 FPPAQQPSKVD 255
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P +++ Y++E WP+V L + EL++IEGSMTV TTRKT DPY
Sbjct: 34 ESSFATLFPRYREG-----YIREAWPIVTRTLGKVGVACELNLIEGSMTVATTRKTSDPY 88
Query: 62 IIIKARDMIKLLSRSVP 78
+I+KARD+IKLL+RS+P
Sbjct: 89 VILKARDLIKLLARSIP 105
>gi|385305422|gb|EIF49399.1| ribosomal rna assembly protein mis3 [Dekkera bruxellensis AWRI1499]
Length = 217
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 146/223 (65%), Gaps = 49/223 (21%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
MTV TTRKT+DP I+ ARD+IKLL+RSVP+ QAV+++QDD++C+++KI LV NK+RF+
Sbjct: 1 MTVKTTRKTYDPVQILNARDLIKLLARSVPFPQAVKIMQDDVACEVVKIDGLVSNKERFI 60
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRRQRLIGP+G TLK++ELLT+CYMLVQG TV+ +GPH
Sbjct: 61 KRRQRLIGPSGNTLKALELLTDCYMLVQGSTVSIMGPH---------------------- 98
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENW 293
+GL +RR++ D MKN+HPIY+IK LMIKRELAK P L NE+W
Sbjct: 99 -----------------QGLKVLRRVIIDCMKNVHPIYHIKELMIKRELAKRPDLANEDW 141
Query: 294 ERFLPNFKSKTLSKRKMPKKRKT---------KSEYTPFPPPQ 327
RFLP FK + ++ R++PK+ K K YTPFPP Q
Sbjct: 142 SRFLPQFKKRAVA-RRIPKQVKDAKKNGKSTEKKVYTPFPPAQ 183
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
MTV TTRKT+DP I+ ARD+IKLL+RSVP+
Sbjct: 1 MTVKTTRKTYDPVQILNARDLIKLLARSVPF 31
>gi|414880760|tpg|DAA57891.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 294
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 147/215 (68%), Gaps = 40/215 (18%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
MTV TTRKT DP+ IIKAR++IKLLSRSVP QA+++L D+++CDIIKIG LV+NK+RFV
Sbjct: 1 MTVSTTRKTRDPFAIIKARELIKLLSRSVPAPQAIKILDDEMNCDIIKIGGLVRNKERFV 60
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRR+RL+GPN TLK+IE+LT CY+LVQG TVAA+G ++G
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYRG-------------------- 100
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNEN 292
+GL QVRRIVED MKN+ HP+Y+IK L+IKRELAK+P L NEN
Sbjct: 101 -----------------RGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALANEN 143
Query: 293 WERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQ 327
W+RFLP K K + ++ + K K YTPFPPPQ
Sbjct: 144 WDRFLP--KFKKKNVKQKKPQTKEKKPYTPFPPPQ 176
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 27/30 (90%)
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
MTV TTRKT DP+ IIKAR++IKLLSRSVP
Sbjct: 1 MTVSTTRKTRDPFAIIKARELIKLLSRSVP 30
>gi|302833165|ref|XP_002948146.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
gi|300266366|gb|EFJ50553.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
Length = 442
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 138/216 (63%), Gaps = 56/216 (25%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+E WP V AL+ I EL+++EGSMTV TTRKTWDP+ IIKARD+IKLL+RSV
Sbjct: 68 REKYLREVWPAVTKALKDVGIGCELNLVEGSMTVRTTRKTWDPFAIIKARDLIKLLARSV 127
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++LQ ++FVKRRQRLIG
Sbjct: 128 PAPQALKILQ-----------------EKFVKRRQRLIG--------------------- 149
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
PNG TLK++ELLT CYMLVQG TVAA+GP+KGL Q+R++VED
Sbjct: 150 ------------------PNGSTLKALELLTGCYMLVQGNTVAAMGPYKGLKQIRKVVED 191
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
+KNIHPIY+IK LMIKRELAKDP L ENW+RFLP
Sbjct: 192 CIKNIHPIYHIKTLMIKRELAKDPALATENWDRFLP 227
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 56/88 (63%), Gaps = 17/88 (19%)
Query: 8 KIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K+ FK EDNP +YL+E WP V AL+ I EL+++EGSMT
Sbjct: 41 KVEPFKPEDNPSGLLEESSFATLFPKYREKYLREVWPAVTKALKDVGIGCELNLVEGSMT 100
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVP 78
V TTRKTWDP+ IIKARD+IKLL+RSVP
Sbjct: 101 VRTTRKTWDPFAIIKARDLIKLLARSVP 128
>gi|221053157|ref|XP_002257953.1| RNA-binding protein [Plasmodium knowlesi strain H]
gi|193807785|emb|CAQ38490.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
Length = 298
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 148/234 (63%), Gaps = 39/234 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL++ +KN L HFIK E+++IEG M V TT+KT+DPYIIIKARD
Sbjct: 51 SFKVLFPKYREKYLQQFSTDIKNVLNNHFIKFEINLIEGYMCVKTTKKTFDPYIIIKARD 110
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
MI LLSRSVP+ A RVL D+ CDIIKI V+N+ +F+KRRQRL+G NG TLK++E+L
Sbjct: 111 MISLLSRSVPFSHAKRVLDDETFCDIIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEIL 170
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
TNCY+ V G+TV+ +G Y K L
Sbjct: 171 TNCYICVHGKTVSVIG--------------------------YF-------------KAL 191
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
VRRI+ D MKNIHP+Y+IK L+ KREL K+ + KNENWE+FLPNFK + + +
Sbjct: 192 KVVRRIIVDCMKNIHPVYHIKELIAKRELQKNEEFKNENWEKFLPNFKKRNVQR 245
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 61/99 (61%), Gaps = 17/99 (17%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKEC-----WPL------------VKNALELHFIKAELDV 44
EN KI +F +EDN + +L+E +P +KN L HFIK E+++
Sbjct: 27 ENIDHWKIEKFTREDNKNHFLEESSFKVLFPKYREKYLQQFSTDIKNVLNNHFIKFEINL 86
Query: 45 IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
IEG M V TT+KT+DPYIIIKARDMI LLSRSVP+ K
Sbjct: 87 IEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFSHAK 125
>gi|124801035|ref|XP_001349592.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|3845166|gb|AAC71863.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 300
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 156/256 (60%), Gaps = 41/256 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL++ +KN L HFIK E+D+IEG M V TT+KT+DPYIIIK+RD
Sbjct: 48 SFKVLFPKYREKYLQQFSSDIKNVLNKHFIKFEIDLIEGYMCVKTTKKTFDPYIIIKSRD 107
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
MI LLSRSVP+ A RVL+D+ CDIIKI V+NK +F+KRRQRL+G N TLK++E+L
Sbjct: 108 MISLLSRSVPFVHAKRVLEDETYCDIIKISGYVRNKNKFIKRRQRLLGSNATTLKALEIL 167
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
TNCY+ + G+TV+ + G K L
Sbjct: 168 TNCYICIHGKTVSVI---------------------------------------GHFKSL 188
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK--RKMP 311
VRRI+ D MKNIHP+Y+IK L+ KREL K+ + KNENWE+FLPNFK + + + K
Sbjct: 189 KVVRRIIIDCMKNIHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNVQRKKIKEK 248
Query: 312 KKRKTKSEYTPFPPPQ 327
+K K + FPP Q
Sbjct: 249 LDKKKKKNKSVFPPDQ 264
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 17/95 (17%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKEC-----WPL------------VKNALELHFIKAELDV 44
EN K+ +F +EDN H +L+E +P +KN L HFIK E+D+
Sbjct: 24 ENIDHWKVEKFTQEDNKHHFLEESSFKVLFPKYREKYLQQFSSDIKNVLNKHFIKFEIDL 83
Query: 45 IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
IEG M V TT+KT+DPYIIIK+RDMI LLSRSVP+
Sbjct: 84 IEGYMCVKTTKKTFDPYIIIKSRDMISLLSRSVPF 118
>gi|156093946|ref|XP_001613011.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148801885|gb|EDL43284.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 301
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 148/235 (62%), Gaps = 39/235 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL++ +KN L HFIK E+++IEG M V TT+KT+DPYIIIKARD
Sbjct: 51 SFKVLFPKYREKYLQQFSTDIKNVLNNHFIKFEMNLIEGYMCVKTTKKTFDPYIIIKARD 110
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
MI LLSRSVP+ A RVL+D+ CDIIKI V+N+ +F+KRRQRL+G NG TLK++E+L
Sbjct: 111 MISLLSRSVPFTHAKRVLEDETFCDIIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEIL 170
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T+CY+ V G+TV+ +G K L
Sbjct: 171 TSCYICVHGKTVS---------------------------------------VIGFFKAL 191
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
VRRI+ D MKNIHP+Y+IK L+ KREL K+ + KNENWE++LPNFK + +R
Sbjct: 192 KVVRRIIIDCMKNIHPVYHIKELIAKRELQKNEEFKNENWEKYLPNFKKRNAQRR 246
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 61/99 (61%), Gaps = 17/99 (17%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKEC-----WPL------------VKNALELHFIKAELDV 44
EN K+ +F +EDN H +L+E +P +KN L HFIK E+++
Sbjct: 27 ENIDHWKVEKFTREDNKHHFLEESSFKVLFPKYREKYLQQFSTDIKNVLNNHFIKFEMNL 86
Query: 45 IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
IEG M V TT+KT+DPYIIIKARDMI LLSRSVP+ K
Sbjct: 87 IEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFTHAK 125
>gi|110289174|gb|ABG66110.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
Length = 292
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 146/221 (66%), Gaps = 54/221 (24%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
MTV TTRKT DPYII+KA+++IKLLSRSVP QA+++L D++SCDIIKIG++++NK+RFV
Sbjct: 1 MTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNKERFV 60
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRR+RL+GPN TLK+IE+LT CY+LVQG TVAA+G K
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWK--------------------- 99
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNEN 292
GL QVRR+VED +KNI HP+Y+IK L+IKRELAK+P L NE+
Sbjct: 100 ------------------GLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANES 141
Query: 293 WERFLPNFKSKT------LSKRKMPKKRKTKSEYTPFPPPQ 327
W+RFLP FK K ++K K P YTPFPPPQ
Sbjct: 142 WDRFLPKFKKKNVKQKKPITKEKKP--------YTPFPPPQ 174
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 28/30 (93%)
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
MTV TTRKT DPYII+KA+++IKLLSRSVP
Sbjct: 1 MTVSTTRKTRDPYIIVKAKELIKLLSRSVP 30
>gi|154341947|ref|XP_001566925.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064250|emb|CAM40449.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 145/259 (55%), Gaps = 52/259 (20%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y+K WP V+ LE H + LD++EGSM V TTR+TWDPY I+ ARD IKLL+R+VP
Sbjct: 42 ESYIKSIWPAVEELLEQHQLVGRLDLMEGSMAVATTRRTWDPYAIVDARDFIKLLARNVP 101
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q DI+CDII IG + +RFVKRR RLIGP TLK++E+LT CY+LVQG+
Sbjct: 102 LAQAQKIFQTDITCDIINIGVKGGSVRRFVKRRDRLIGPKAQTLKALEILTGCYVLVQGK 161
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP KG VR IVED
Sbjct: 162 TVAVMGP---------------------------------------VKGTQMVRSIVEDC 182
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEY--- 320
M NIHPIY +K L+IKREL+K +K+E+W RF+P +K +K K RK K E
Sbjct: 183 MNNIHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKD 242
Query: 321 ----------TPFPPPQPE 329
T FPP P+
Sbjct: 243 LKHKQAGKVKTIFPPAPPK 261
>gi|401425923|ref|XP_003877446.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493691|emb|CBZ28981.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 321
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 148/258 (57%), Gaps = 52/258 (20%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y+K WP V+ L H + +LD++EGSMTV TTR+TWDPY II ARD IKLL+R+VP
Sbjct: 42 ETYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVP 101
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q DI+CDII I + +RFVKRR RLIGP TLK++E+LT CY+LVQG+
Sbjct: 102 LAQAQKIFQADITCDIINISVKGGSVRRFVKRRDRLIGPKAQTLKALEILTGCYVLVQGK 161
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP KG VR IVED
Sbjct: 162 TVAVMGP---------------------------------------VKGTQMVRSIVEDC 182
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF------KSKTLSKRKMPKKRKTK 317
M NIHPIY +K L+IKRELAK +K+E+W RF+P + K K + RKM K+R +
Sbjct: 183 MNNIHPIYGLKQLLIKRELAKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKE 242
Query: 318 S-------EYTPFPPPQP 328
S E T FPP P
Sbjct: 243 SKRKQAGKEKTIFPPAPP 260
>gi|157872762|ref|XP_001684909.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127979|emb|CAJ06702.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 321
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 149/259 (57%), Gaps = 52/259 (20%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y+K WP V+ L H + +LD++EGSMTV TTR+TWDPY II ARD IKLL+R+VP
Sbjct: 42 ESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVP 101
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q DI+CDII I + +RFVKRR RLIGP TLK++E+LT CY+LVQG+
Sbjct: 102 LAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQAQTLKALEILTGCYVLVQGK 161
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP KG VR IVED
Sbjct: 162 TVAVMGP---------------------------------------VKGTQMVRSIVEDC 182
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF------KSKTLSKRKMPKKRKTK 317
M NIHPIY +K L+IKREL+K +K+E+W RF+P + K K + RKM K+R +
Sbjct: 183 MNNIHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKE 242
Query: 318 S-------EYTPFPPPQPE 329
S E T FPP P+
Sbjct: 243 SKRKQAGKEKTIFPPAPPK 261
>gi|70949626|ref|XP_744206.1| RNA-binding protein [Plasmodium chabaudi chabaudi]
gi|56524063|emb|CAH77733.1| RNA-binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 297
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 150/234 (64%), Gaps = 40/234 (17%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S + + +E+YL++ +KN L HFIK E+++IEG MTV TT+KT+DPYIIIKARD
Sbjct: 49 SFKILFPKYREKYLQQFSTDIKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARD 108
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
MI LLSRSVP+ A RVL+D+ CD IKI ++NK +F+KRRQRL+G N TLK++E+L
Sbjct: 109 MISLLSRSVPFSHAKRVLEDETFCD-IKISGYIRNKNKFIKRRQRLLGSNATTLKALEIL 167
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+ V G+TV+ +G KS+++
Sbjct: 168 TQCYICVHGKTVSVIG---------------NFKSLKI---------------------- 190
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
VRRIV D MKNIHP+Y+IK L+ KREL K+ +LKNENWE++LPNFK + + +
Sbjct: 191 --VRRIVIDCMKNIHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQR 242
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 62/99 (62%), Gaps = 17/99 (17%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKEC-----WPL------------VKNALELHFIKAELDV 44
EN KI +F KEDN H +L+E +P +KN L HFIK E+++
Sbjct: 25 ENIDHWKIEKFTKEDNKHHFLEESSFKILFPKYREKYLQQFSTDIKNTLHNHFIKFEINL 84
Query: 45 IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
IEG MTV TT+KT+DPYIIIKARDMI LLSRSVP+ K
Sbjct: 85 IEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPFSHAK 123
>gi|71422464|ref|XP_812143.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876887|gb|EAN90292.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 292
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 153/263 (58%), Gaps = 52/263 (19%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y++ WP V+ L H + +LD++EGSMTV TTR+TWDPYII+KARD I+LL+R+VP
Sbjct: 41 ESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWDPYIIVKARDFIRLLARNVP 100
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q +I+CDII I + +RF+KRR RL+GP TLK++E+LT CY+LVQG+
Sbjct: 101 LAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKAQTLKALEILTGCYVLVQGK 160
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP K GC QVR+IV+D
Sbjct: 161 TVAVMGPVK----------GCQ-----------------------------QVRKIVDDC 181
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR-------------KM 310
M NIHPIY +K L+IKRELAK L++E+W RF+P +K +K ++
Sbjct: 182 MNNIHPIYGLKQLLIKRELAKREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRV 241
Query: 311 PKKRKTKSEYTPFPPPQPESEAN 333
K++ E + FPP P+ + +
Sbjct: 242 SLKKQAGKEKSIFPPAPPKRKED 264
>gi|407416655|gb|EKF37751.1| hypothetical protein MOQ_002048 [Trypanosoma cruzi marinkellei]
Length = 292
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 153/263 (58%), Gaps = 52/263 (19%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y++ WP V+ L H + +LD++EGSMTV TTR+TWDPYII+KARD I+LL+R+VP
Sbjct: 41 ESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWDPYIIVKARDFIRLLARNVP 100
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q +I+CDII I + +RF+KRR RL+GP TLK++E+LT CY+LVQG+
Sbjct: 101 LAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKAQTLKALEILTGCYVLVQGK 160
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP K GC QVR+IV+D
Sbjct: 161 TVAVMGPVK----------GCQ-----------------------------QVRKIVDDC 181
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR-------------KM 310
M NIHPIY +K L+IKRELAK L++E+W RF+P +K +K ++
Sbjct: 182 MNNIHPIYGLKQLLIKRELAKREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRV 241
Query: 311 PKKRKTKSEYTPFPPPQPESEAN 333
K++ E + FPP P+ + +
Sbjct: 242 SLKKQAGKEKSIFPPAPPKRKED 264
>gi|71650197|ref|XP_813801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878720|gb|EAN91950.1| hypothetical protein, conserved [Trypanosoma cruzi]
gi|407851896|gb|EKG05594.1| hypothetical protein TCSYLVIO_003331 [Trypanosoma cruzi]
Length = 292
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 153/263 (58%), Gaps = 52/263 (19%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y++ WP V+ L H + +LD++EGSMTV TTR+TWDPYII+KARD I+LL+R+VP
Sbjct: 41 ESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWDPYIIVKARDFIRLLARNVP 100
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q +I+CDII I + +RF+KRR RL+GP TLK++E+LT CY+LVQG+
Sbjct: 101 LAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKAQTLKALEILTGCYVLVQGK 160
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP K GC QVR+IV+D
Sbjct: 161 TVAVMGPVK----------GCQ-----------------------------QVRKIVDDC 181
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR-------------KM 310
M NIHPIY +K L+IKRELAK L++E+W RF+P +K +K ++
Sbjct: 182 MNNIHPIYGLKQLLIKRELAKREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRV 241
Query: 311 PKKRKTKSEYTPFPPPQPESEAN 333
K++ E + FPP P+ + +
Sbjct: 242 SLKKQAGKEKSIFPPAPPKRKED 264
>gi|146094080|ref|XP_001467151.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134071515|emb|CAM70204.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 321
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 150/265 (56%), Gaps = 55/265 (20%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y+K WP V+ L H + +LD++EGSMTV TTR+TWDPY II ARD IKLL+R+VP
Sbjct: 42 ESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVP 101
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q DI+CDII I + +RFVKRR RLIGP TLK++E+LT CY+LVQG+
Sbjct: 102 LAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQAQTLKALEILTGCYVLVQGK 161
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP KG VR IVED
Sbjct: 162 TVAVMGP---------------------------------------VKGTQMVRSIVEDC 182
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF------KSKTLSKRKMPKKR--- 314
M NIHPIY +K L+IKREL+K +K+E+W RF+P + K K + RKM K+R
Sbjct: 183 MNNIHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKE 242
Query: 315 -------KTKSEYTPFPPPQPESEA 332
K KS + P PP + E A
Sbjct: 243 AKRKQAGKEKSIFPPAPPKRLEDIA 267
>gi|398019704|ref|XP_003863016.1| hypothetical protein, conserved [Leishmania donovani]
gi|322501247|emb|CBZ36326.1| hypothetical protein, conserved [Leishmania donovani]
Length = 321
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 150/265 (56%), Gaps = 55/265 (20%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y+K WP V+ L H + +LD++EGSMTV TTR+TWDPY II ARD IKLL+R+VP
Sbjct: 42 ESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWDPYAIIDARDFIKLLARNVP 101
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q DI+CDII I + +RFVKRR RLIGP TLK++E+LT CY+LVQG+
Sbjct: 102 LAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQAQTLKALEILTGCYVLVQGK 161
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +G P KG VR IVED
Sbjct: 162 TVAVMG---------------------------------------PVKGTQMVRSIVEDC 182
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF------KSKTLSKRKMPKKR--- 314
M NIHPIY +K L+IKREL+K +K+E+W RF+P + K K + RKM K+R
Sbjct: 183 MNNIHPIYGLKQLLIKRELSKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKE 242
Query: 315 -------KTKSEYTPFPPPQPESEA 332
K KS + P PP + E A
Sbjct: 243 AKRKQAGKEKSIFPPAPPKRLEDIA 267
>gi|72390515|ref|XP_845552.1| ribosomal RNA assembly protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358823|gb|AAX79276.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei]
gi|70802087|gb|AAZ11993.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 325
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 154/264 (58%), Gaps = 54/264 (20%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y++ WP V+ L H + +LD++EGSMTV TTR+TWDPY I+KARD I+LL+R+VP
Sbjct: 78 ESYIRSIWPAVETVLGQHQLTGKLDLMEGSMTVATTRRTWDPYAIVKARDFIRLLARNVP 137
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q +I+CDII I ++ +RF+KRR RLIGP TLK++E+LT CY+LVQG+
Sbjct: 138 LAQAQKIFQTEITCDIIPISLKGKSTRRFIKRRDRLIGPKAQTLKALEILTGCYVLVQGK 197
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP K GC QVR+IV+D
Sbjct: 198 TVAVMGPVK----------GCQ-----------------------------QVRKIVDDC 218
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR--------------K 309
M NIHPIY +K L+IKRELAK LK+E+W RF+P +K KTL + +
Sbjct: 219 MNNIHPIYGLKQLLIKRELAKREDLKHEDWSRFIPVYK-KTLQNKEKAKAVKKAKKEKLQ 277
Query: 310 MPKKRKTKSEYTPFPPPQPESEAN 333
K++ E + FPP P+ + +
Sbjct: 278 ASLKKQANKEKSVFPPAPPKRKED 301
>gi|261328960|emb|CBH11938.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 287
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 154/264 (58%), Gaps = 54/264 (20%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y++ WP V+ L H + +LD++EGSMTV TTR+TWDPY I+KARD I+LL+R+VP
Sbjct: 40 ESYIRSIWPAVETVLGQHQLTGKLDLMEGSMTVATTRRTWDPYAIVKARDFIRLLARNVP 99
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q +I+CDII I ++ +RF+KRR RLIGP TLK++E+LT CY+LVQG+
Sbjct: 100 LAQAQKIFQTEITCDIIPISLKGKSTRRFIKRRDRLIGPKAQTLKALEILTGCYVLVQGK 159
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TVA +GP K GC QVR+IV+D
Sbjct: 160 TVAVMGPVK----------GCQ-----------------------------QVRKIVDDC 180
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR--------------K 309
M NIHPIY +K L+IKRELAK LK+E+W RF+P +K KTL + +
Sbjct: 181 MNNIHPIYGLKQLLIKRELAKREDLKHEDWSRFIPVYK-KTLQNKEKAKAVKKAKKEKLQ 239
Query: 310 MPKKRKTKSEYTPFPPPQPESEAN 333
K++ E + FPP P+ + +
Sbjct: 240 ASLKKQANKEKSVFPPAPPKRKED 263
>gi|357625461|gb|EHJ75900.1| hypothetical protein KGM_05036 [Danaus plexippus]
Length = 243
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/171 (60%), Positives = 118/171 (69%), Gaps = 39/171 (22%)
Query: 135 IKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLT 194
+KLLSRSVP+EQAVRVL D+I CDIIKI + V K+ F+KRRQRLIG
Sbjct: 1 MKLLSRSVPFEQAVRVLDDEIGCDIIKINSFVSKKETFLKRRQRLIG------------- 47
Query: 195 NCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254
PNG TLKSIELLT+CY+LVQG TV+ +GP+KGLL
Sbjct: 48 --------------------------PNGVTLKSIELLTDCYVLVQGNTVSTVGPYKGLL 81
Query: 255 QVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
QVRRIVEDTMKNIHP+YNIK LMIKREL KDPKLKNE+W+RFLP FKSK +
Sbjct: 82 QVRRIVEDTMKNIHPMYNIKNLMIKRELMKDPKLKNESWDRFLPKFKSKNV 132
>gi|339234367|ref|XP_003382300.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978674|gb|EFV61623.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 167
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 113/126 (89%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL+EC+PL++ AL H IKAE+D + GSMTV TTRKTWDPY+I+KARD+IKLL+RSV
Sbjct: 42 REKYLRECFPLLQKALSEHGIKAEMDALRGSMTVRTTRKTWDPYVILKARDLIKLLARSV 101
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P EQAVR+L+DD +CDIIKI LV+N+ RFVKRRQRLIGPNGCTLK+IELLTNCY+++QG
Sbjct: 102 PIEQAVRILEDDTACDIIKISGLVRNRVRFVKRRQRLIGPNGCTLKAIELLTNCYIMIQG 161
Query: 203 QTVAAL 208
TV+A+
Sbjct: 162 NTVSAV 167
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVI 45
N W KIP F ++DNP +YL+EC+PL++ AL H IKAE+D +
Sbjct: 12 NIW--KIPSFTQKDNPQGLLCESNFATLFPKYREKYLRECFPLLQKALSEHGIKAEMDAL 69
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
GSMTV TTRKTWDPY+I+KARD+IKLL+RSVP E
Sbjct: 70 RGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIE 104
>gi|116194448|ref|XP_001223036.1| 90S preribosome/SSU processome component KRR1 [Chaetomium globosum
CBS 148.51]
gi|88179735|gb|EAQ87203.1| hypothetical protein CHGG_03822 [Chaetomium globosum CBS 148.51]
Length = 291
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 147/253 (58%), Gaps = 70/253 (27%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLK+ WPLV AL+ H I A LD+IEGSMTV TT+KT+DP I+ ARD+IKLL+RSV
Sbjct: 47 RERYLKDSWPLVTKALDKHGITATLDLIEGSMTVKTTKKTFDPAAILNARDLIKLLARSV 106
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P QA+++L+D ++CDI+KI ++V+NK+RFVKRRQR++G N
Sbjct: 107 PAPQAIKILEDGMACDILKIRSMVRNKERFVKRRQRILGQN------------------- 147
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
G TLK++ELLT Y+LV G TV+ +G
Sbjct: 148 --------------------GTTLKALELLTETYILVHGNTVSVMG-------------- 173
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK--RKTKSEY 320
IKRELAKDP+L +E+W R+LPNFK +TLSKR+ P K K K Y
Sbjct: 174 ---------------IKRELAKDPELAHEDWSRYLPNFKKRTLSKRRTPFKVTDKAKKTY 218
Query: 321 TPFPPPQPESEAN 333
TPFPP +S+ +
Sbjct: 219 TPFPPAPEKSKVD 231
>gi|29841357|gb|AAP06389.1| similar to GenBank Accession Number BC016778 HIV-1 rev binding
protein 2 in Homo sapiens [Schistosoma japonicum]
Length = 343
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 153/244 (62%), Gaps = 42/244 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL E WP +K + H I+ E+++ E +M V TT +T+DP+II+KARD+I+LL+RSV
Sbjct: 74 REKYLSEIWPALKRIMMEHHIRVEINLAESTMEVRTTPRTFDPFIILKARDVIRLLARSV 133
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P EQAVRVL D+ DII+I + N++RFVKRR RLIG +G TLK++EL TNCY++VQG
Sbjct: 134 PLEQAVRVLDDETFADIIEIN--MTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQG 191
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
+TV+ +G + L +VR+IV+
Sbjct: 192 KTVSVVG---------------------------------------RYNDLKEVRKIVQG 212
Query: 263 TM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYT 321
+ +N+HP Y+IK L+I ++L+ DP +N +W+RFLP K K LS+R+ P K + K EY
Sbjct: 213 CIYENVHPAYSIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKVRKKKEYN 272
Query: 322 PFPP 325
PFPP
Sbjct: 273 PFPP 276
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 18/91 (19%)
Query: 8 KIPEFKKEDNPH------------------EYLKECWPLVKNALELHFIKAELDVIEGSM 49
K P+F EDNPH +YL E WP +K + H I+ E+++ E +M
Sbjct: 46 KEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLSEIWPALKRIMMEHHIRVEINLAESTM 105
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT +T+DP+II+KARD+I+LL+RSVP E
Sbjct: 106 EVRTTPRTFDPFIILKARDVIRLLARSVPLE 136
>gi|189503038|gb|ACE06900.1| unknown [Schistosoma japonicum]
Length = 343
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 153/244 (62%), Gaps = 42/244 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL E WP +K + H I+ E+++ E +M V TT +T+DP+II+KARD+I+LL+RSV
Sbjct: 74 REKYLNEIWPALKRIMMEHHIRVEINLAESTMEVRTTPRTFDPFIILKARDVIRLLARSV 133
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P EQAVRVL D+ DII+I + N++RFVKRR RLIG +G TLK++EL TNCY++VQG
Sbjct: 134 PLEQAVRVLDDETFADIIEIN--MTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQG 191
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
+TV+ +G + L +VR+IV+
Sbjct: 192 KTVSVVG---------------------------------------RYNDLKEVRKIVQG 212
Query: 263 TM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYT 321
+ +N+HP Y+IK L+I ++L+ DP +N +W+RFLP K K LS+R+ P K + K EY
Sbjct: 213 CIYENVHPAYSIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKVRKKKEYN 272
Query: 322 PFPP 325
PFPP
Sbjct: 273 PFPP 276
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 18/91 (19%)
Query: 8 KIPEFKKEDNPH------------------EYLKECWPLVKNALELHFIKAELDVIEGSM 49
K P+F EDNPH +YL E WP +K + H I+ E+++ E +M
Sbjct: 46 KEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLNEIWPALKRIMMEHHIRVEINLAESTM 105
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT +T+DP+II+KARD+I+LL+RSVP E
Sbjct: 106 EVRTTPRTFDPFIILKARDVIRLLARSVPLE 136
>gi|226466630|emb|CAX69450.1| KRR1, small subunit (SSU) processome component, homolog
[Schistosoma japonicum]
Length = 343
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 153/244 (62%), Gaps = 42/244 (17%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+YL E WP +K + H I+ E+++ E +M V TT +T+DP+II+KARD+I+LL+RSV
Sbjct: 74 REKYLNEIWPALKRIMMEHHIRVEINLAESTMEVRTTPRTFDPFIILKARDVIRLLARSV 133
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P EQAVRVL D+ DII+I + N++RFVKRR RLIG +G TLK++EL TNCY++VQG
Sbjct: 134 PLEQAVRVLDDETFADIIEIN--MTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQG 191
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
+TV+ +G + L +VR+IV+
Sbjct: 192 KTVSVVG---------------------------------------RYNDLKEVRKIVQG 212
Query: 263 TM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYT 321
+ +N+HP Y+IK L+I ++L+ DP +N +W+RFLP K K LS+R+ P K + K EY
Sbjct: 213 CIYENVHPAYSIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKIRKKKEYN 272
Query: 322 PFPP 325
PFPP
Sbjct: 273 PFPP 276
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 18/91 (19%)
Query: 8 KIPEFKKEDNPH------------------EYLKECWPLVKNALELHFIKAELDVIEGSM 49
K P+F EDNPH +YL E WP +K + H I+ E+++ E +M
Sbjct: 46 KEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLNEIWPALKRIMMEHHIRVEINLAESTM 105
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT +T+DP+II+KARD+I+LL+RSVP E
Sbjct: 106 EVRTTPRTFDPFIILKARDVIRLLARSVPLE 136
>gi|340054290|emb|CCC48586.1| putative ribosomal RNA assembly protein [Trypanosoma vivax Y486]
Length = 284
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 39/218 (17%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y++ WP V+ L H + +LD++EGSMTV TTR+TWDPY ++KARD I+LL+R+VP
Sbjct: 39 ESYIRSVWPAVEAVLAQHQLTGQLDLLEGSMTVATTRRTWDPYAVVKARDFIRLLARNVP 98
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q +I+CDII I ++ + F+KRR RL+GP TLK++E+LT CY+LVQG+
Sbjct: 99 LAQAQKIFQTEITCDIIPISLKGKSTRCFIKRRDRLVGPKAQTLKALEILTGCYVLVQGK 158
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
TV+ +GP K GC QVR+IV+D
Sbjct: 159 TVSVMGPVK----------GCQ-----------------------------QVRKIVDDC 179
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
M NIHP+Y ++ L+IKREL+K LK+E+W RF+P +K
Sbjct: 180 MNNIHPVYGLQQLLIKRELSKREDLKHEDWSRFIPVYK 217
>gi|440296337|gb|ELP89164.1| hypothetical protein EIN_485560 [Entamoeba invadens IP1]
Length = 255
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 151/263 (57%), Gaps = 52/263 (19%)
Query: 76 SVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMI 135
SV + +E Y+K P + LE +K ++D ++GS + TTRKT+DP+IIIK RDM+
Sbjct: 28 SVAFPKFREAYIKSILPALVAKLEEFKLKIDVDYLQGSFVIKTTRKTFDPFIIIKGRDML 87
Query: 136 KLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTN 195
KL+ R E A ++L DD CDIIKIGN+V +++R VKRRQRL+GPNG T K+IE+LT
Sbjct: 88 KLIGRGADLELASKILLDDYWCDIIKIGNMVVDRKRLVKRRQRLVGPNGATQKAIEILTE 147
Query: 196 CYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255
C +VQG+TVA +G P G L
Sbjct: 148 CQFIVQGKTVAVIG----------KPEGLKL----------------------------- 168
Query: 256 VRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR------- 308
VR+IVED M NIHP+YNIK+LMI++ELAK+ K+K+E+W+R++P + K ++
Sbjct: 169 VRKIVEDCMNNIHPVYNIKSLMIRKELAKNDKMKSESWDRYIPKYVKKYRPEKTEEEKLR 228
Query: 309 ------KMPKKRKTKSEYTPFPP 325
K + K YTPFPP
Sbjct: 229 IKKKKEIKRKIIERKKNYTPFPP 251
>gi|346975397|gb|EGY18849.1| ribosomal RNA assembly protein mis3 [Verticillium dahliae VdLs.17]
Length = 216
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 127/201 (63%), Gaps = 39/201 (19%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S SV + +E YLKE WPLV +LE + I LD+IEGSMTV TTRKT+DP ++ ARD
Sbjct: 38 SFSVLFPKYREVYLKEAWPLVTKSLEKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARD 97
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
+IKLL+RSVP QAV++L+D ++CDIIKI NLV NK RFVKRRQRL+GPNG TLK++ELL
Sbjct: 98 LIKLLARSVPAPQAVKILEDGVACDIIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELL 157
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+LV G TV+A+GP+ KGL
Sbjct: 158 TETYILVHGNTVSAMGPY---------------------------------------KGL 178
Query: 254 LQVRRIVEDTMKNIHPIYNIK 274
+VRRI TM NIHPIY IK
Sbjct: 179 KEVRRIAIQTMDNIHPIYAIK 199
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 57/77 (74%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S+ P++++ YLKE WPLV +LE + I LD+IEGSMTV TTRKT+DP
Sbjct: 36 ESSFSVLFPKYREV-----YLKEAWPLVTKSLEKYGIACSLDLIEGSMTVKTTRKTYDPA 90
Query: 62 IIIKARDMIKLLSRSVP 78
++ ARD+IKLL+RSVP
Sbjct: 91 AVLNARDLIKLLARSVP 107
>gi|390371134|dbj|GAB65015.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 283
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 134/235 (57%), Gaps = 54/235 (22%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL++ +KN L HF+K E+++IEG M ARD
Sbjct: 51 SFKVLFPKYREKYLQQFSTDIKNVLNNHFVKFEMNLIEGYMC---------------ARD 95
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
MI LLSRSVP+ A RVL D+ CDIIKI V+NK +F+KRRQRL+G NG TLK++E+L
Sbjct: 96 MISLLSRSVPFSHAKRVLDDETFCDIIKISTYVRNKNKFIKRRQRLLGSNGTTLKALEIL 155
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
TNCY+ V G+TV+ +G Y K L
Sbjct: 156 TNCYICVHGKTVSVIG--------------------------YF-------------KAL 176
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKR 308
VRRI+ D MKNIHP+Y+IK L+ KREL K+ + KNENWE+FLPNFK + +R
Sbjct: 177 KVVRRIIVDCMKNIHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNAQRR 231
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 32/99 (32%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKEC-----WPL------------VKNALELHFIKAELDV 44
EN K+ +F +EDN + +L+E +P +KN L HF+K E+++
Sbjct: 27 ENIDHWKVEKFTREDNKNHFLEESSFKVLFPKYREKYLQQFSTDIKNVLNNHFVKFEMNL 86
Query: 45 IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK 83
IEG M ARDMI LLSRSVP+ K
Sbjct: 87 IEGYMC---------------ARDMISLLSRSVPFSHAK 110
>gi|429327834|gb|AFZ79594.1| hypothetical protein BEWA_024430 [Babesia equi]
Length = 243
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 114/175 (65%), Gaps = 39/175 (22%)
Query: 131 ARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSI 190
ARD+IKLL+RSVP++QA +VL D I CDI+KIG +++NK +F+KRRQRLIG
Sbjct: 3 ARDLIKLLARSVPFQQAKKVLDDGIFCDIVKIGGMLRNKDKFIKRRQRLIG--------- 53
Query: 191 ELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 250
P G TLK++ELLT CY+L QGQTV+ +G
Sbjct: 54 ------------------------------PGGSTLKALELLTECYILTQGQTVSIIGSI 83
Query: 251 KGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
KG+ RRIVED MKN+HP+Y+IK LMIKREL KDP LKNENW+RFLP FK +++
Sbjct: 84 KGIKVARRIVEDCMKNVHPVYHIKELMIKRELEKDPALKNENWDRFLPQFKKRSV 138
>gi|123455111|ref|XP_001315303.1| ribosomal RNA assembly protein mis3 [Trichomonas vaginalis G3]
gi|121897975|gb|EAY03080.1| ribosomal RNA assembly protein mis3, putative [Trichomonas
vaginalis G3]
Length = 298
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 149/263 (56%), Gaps = 45/263 (17%)
Query: 71 KLLSRS---VPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
KLL S V + +E+YL + W +++ ++ + I E+D G++++ TT KTWDP
Sbjct: 19 KLLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVA 78
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
I+ ARD IKL++RSVP EQA RV ++ +II IG ++N++RF KRRQRL+GP G TL
Sbjct: 79 ILNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTL 138
Query: 188 KSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAAL 247
K++ELLT CY+LVQG TV+ +G NI
Sbjct: 139 KALELLTQCYILVQGHTVSIIG--------NI---------------------------- 162
Query: 248 GPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
+G+ ++V D M NIHP+Y+IK LM+KR+L K+P + NE+W+R+LP T
Sbjct: 163 ---RGINDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKAT--- 216
Query: 308 RKMPKKRKTKSEYTPFPPPQPES 330
+ KK+K +E P P+
Sbjct: 217 KHTEKKKKVHNERNRGLPDYPQD 239
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P ++++ YL + W +++ ++ + I E+D G++++ TT KTWDP
Sbjct: 23 ESSFKVLFPHYREK-----YLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPV 77
Query: 62 IIIKARDMIKLLSRSVPYE 80
I+ ARD IKL++RSVP E
Sbjct: 78 AILNARDAIKLVARSVPIE 96
>gi|311302998|gb|ADP89073.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 42/257 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL + W +++ ++ + I E+D G++++ TT KTWDP I+ ARD
Sbjct: 6 SFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARD 65
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
IKL++RSVP EQA RV ++ +II IG ++N++RF KRRQRL+GP G TLK++ELL
Sbjct: 66 AIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELL 125
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TV+ +G NI +G+
Sbjct: 126 TQCYILVQGHTVSIIG--------NI-------------------------------RGI 146
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
++V D M NIHP+Y+IK LM+KR+L K+P + NE+W+R+LP T + KK
Sbjct: 147 NDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKAT---KHTEKK 203
Query: 314 RKTKSEYTPFPPPQPES 330
+K +E P P+
Sbjct: 204 KKVHNERNRGLPDYPQD 220
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P ++++ YL + W +++ ++ + I E+D G++++ TT KTWDP
Sbjct: 4 ESSFKVLFPHYREK-----YLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPV 58
Query: 62 IIIKARDMIKLLSRSVPYE 80
I+ ARD IKL++RSVP E
Sbjct: 59 AILNARDAIKLVARSVPIE 77
>gi|311302994|gb|ADP89071.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303000|gb|ADP89074.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303004|gb|ADP89076.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 42/257 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL + W +++ ++ + I E+D G++++ TT KTWDP I+ ARD
Sbjct: 6 SFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARD 65
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
IKL++RSVP EQA RV ++ +II IG ++N++RF KRRQRL+GP G TLK++ELL
Sbjct: 66 AIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELL 125
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TV+ +G NI +G+
Sbjct: 126 TQCYILVQGHTVSIIG--------NI-------------------------------RGI 146
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
++V D M NIHP+Y+IK LM+KR+L K+P + NE+W+R+LP T + KK
Sbjct: 147 NDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKAT---KHTEKK 203
Query: 314 RKTKSEYTPFPPPQPES 330
+K +E P P+
Sbjct: 204 KKVHNERNRGLPDYPQD 220
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P ++++ YL + W +++ ++ + I E+D G++++ TT KTWDP
Sbjct: 4 ESSFKVLFPHYREK-----YLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPV 58
Query: 62 IIIKARDMIKLLSRSVPYE 80
I+ ARD IKL++RSVP E
Sbjct: 59 AILNARDAIKLVARSVPIE 77
>gi|311302996|gb|ADP89072.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 145/257 (56%), Gaps = 42/257 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL + W +++ ++ + I E+D G++++ TT KTWDP I+ ARD
Sbjct: 6 SFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARD 65
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
IKL++RSVP EQA RV ++ +II IG ++N++RF KRRQRL+GP G TLK++ELL
Sbjct: 66 AIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELL 125
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+LVQG TV+ +G N C G+
Sbjct: 126 TQCYILVQGHTVSIIG------------NIC---------------------------GI 146
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
++V D M NIHP+Y+IK LM+KR+L K+P + NE+W+R+LP T + KK
Sbjct: 147 NDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKAT---KHTEKK 203
Query: 314 RKTKSEYTPFPPPQPES 330
+K +E P P+
Sbjct: 204 KKVHNERNRGLPDYPQD 220
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P ++++ YL + W +++ ++ + I E+D G++++ TT KTWDP
Sbjct: 4 ESSFKVLFPHYREK-----YLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPV 58
Query: 62 IIIKARDMIKLLSRSVPYE 80
I+ ARD IKL++RSVP E
Sbjct: 59 AILNARDAIKLVARSVPIE 77
>gi|311303002|gb|ADP89075.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 146/257 (56%), Gaps = 42/257 (16%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S V + +E+YL + W +++ ++ + I E+D G++++ TT KTWDP I+ ARD
Sbjct: 6 SFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAILNARD 65
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
IKL++RSVP EQA RV ++ +II IG ++N++RF KRRQRL+GP G TLK++ELL
Sbjct: 66 AIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLKALELL 125
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T CY+L+QG TV+ +G NI +G+
Sbjct: 126 TQCYILIQGHTVSIIG--------NI-------------------------------RGI 146
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
++V D M NIHP+Y+IK LM+KR+L K+P + NE+W+R+LP T + KK
Sbjct: 147 NDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPAMANEDWDRYLPKVVKAT---KHTEKK 203
Query: 314 RKTKSEYTPFPPPQPES 330
+K +E P P+
Sbjct: 204 KKVHNERNRGLPDYPQD 220
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++ + P ++++ YL + W +++ ++ + I E+D G++++ TT KTWDP
Sbjct: 4 ESSFKVLFPHYREK-----YLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPV 58
Query: 62 IIIKARDMIKLLSRSVPYE 80
I+ ARD IKL++RSVP E
Sbjct: 59 AILNARDAIKLVARSVPIE 77
>gi|308158862|gb|EFO61423.1| KRR1 [Giardia lamblia P15]
Length = 328
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 144/257 (56%), Gaps = 41/257 (15%)
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTW 123
K+ ++ + S S + +E Y+ W + N L + I AELD+ +G++TV TT KTW
Sbjct: 45 KSGALLDVSSFSTLFPMYREPYITSIWKDLANMLSSKYGIAAELDLQKGTITVQTTDKTW 104
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPN 183
DP I+ AR+MI +LSRS+ +EQA R ++++ CDII+I N+ K F+KRR R +GPN
Sbjct: 105 DPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDIIRIKNMASRKDSFIKRRARFVGPN 164
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQT 243
TLK+IELLTN + VQG TVA +G +G+
Sbjct: 165 AQTLKAIELLTNTKIQVQGNTVAVMGASRGV----------------------------- 195
Query: 244 VAALGPHKGLLQVRRIVEDTM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKS 302
GL VR IV D + +NIHP+ +IK LMIKRELAK P++ NE+W RF+P FK
Sbjct: 196 --------GL--VRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKK 245
Query: 303 KTLSKRKMPKKRKTKSE 319
K K K K K E
Sbjct: 246 KNTKPYKPAKVAKRKRE 262
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 19/100 (19%)
Query: 10 PEFKKEDNP------------------HEYLKECWPLVKNALELHF-IKAELDVIEGSMT 50
PEF+ EDN Y+ W + N L + I AELD+ +G++T
Sbjct: 37 PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLANMLSSKYGIAAELDLQKGTIT 96
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKEC 90
V TT KTWDP I+ AR+MI +LSRS+ +E K + E
Sbjct: 97 VQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
>gi|22901766|gb|AAN10062.1| KRR1 [Giardia intestinalis]
Length = 305
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 144/257 (56%), Gaps = 41/257 (15%)
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTW 123
K+ ++ + S S + +E Y+ W + N L + I AELD+ +G++TV TT KTW
Sbjct: 22 KSGALLDVSSFSTLFPMYREPYITSIWKDLANMLSSKYGIAAELDLQKGTITVQTTDKTW 81
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPN 183
DP I+ AR+MI +LSRS+ +EQA R ++++ CDII+I N+ K F+KRR R +GPN
Sbjct: 82 DPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDIIRIKNMASRKDSFIKRRARFVGPN 141
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQT 243
TLK+IELLT+ + VQG TVA +G +G+
Sbjct: 142 AQTLKAIELLTDTKIQVQGNTVAVMGASRGV----------------------------- 172
Query: 244 VAALGPHKGLLQVRRIVEDTM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKS 302
GL VR IV D + +NIHP+ +IK LMIKRELAK P++ NE+W RF+P FK
Sbjct: 173 --------GL--VRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKK 222
Query: 303 KTLSKRKMPKKRKTKSE 319
K K K K K E
Sbjct: 223 KNTKPYKPAKVAKRKRE 239
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 19/100 (19%)
Query: 10 PEFKKEDNPHE------------------YLKECWPLVKNALELHF-IKAELDVIEGSMT 50
PEF+ EDN Y+ W + N L + I AELD+ +G++T
Sbjct: 14 PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLANMLSSKYGIAAELDLQKGTIT 73
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKEC 90
V TT KTWDP I+ AR+MI +LSRS+ +E K + E
Sbjct: 74 VQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 113
>gi|358256270|dbj|GAA57747.1| ribosomal RNA assembly protein, partial [Clonorchis sinensis]
Length = 359
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 136/213 (63%), Gaps = 42/213 (19%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
I+AELD+ E SM V TT KT+DP+II+KARD+++LL+RSVP+EQA+RVLQDDI D+I+I
Sbjct: 2 IRAELDLTESSMEVRTTPKTFDPFIILKARDVMRLLARSVPFEQAIRVLQDDIFSDVIEI 61
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPN 222
+ N++RF+KRR RLIG G TLK++EL TNCY++VQG+TV+A+G
Sbjct: 62 N--LTNRERFIKRRNRLIGYEGETLKALELSTNCYIVVQGKTVSAIG------------- 106
Query: 223 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTM-KNIHPIYNIKALMIKRE 281
++ L QVR+IV + NIHP Y+IK L+I ++
Sbjct: 107 --------------------------HYEDLKQVRKIVLGCIYDNIHPAYSIKRLLIIKK 140
Query: 282 LAKDPKLKNENWERFLPNFKSKTLSKRKMPKKR 314
L DP K+ +W+RFLP K K LS+R+ P K+
Sbjct: 141 LQADPTKKDVSWDRFLPKLKKKVLSRRRKPHKK 173
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 38/43 (88%)
Query: 38 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
I+AELD+ E SM V TT KT+DP+II+KARD+++LL+RSVP+E
Sbjct: 2 IRAELDLTESSMEVRTTPKTFDPFIILKARDVMRLLARSVPFE 44
>gi|160331564|ref|XP_001712489.1| rip1 [Hemiselmis andersenii]
gi|159765937|gb|ABW98164.1| rip1 [Hemiselmis andersenii]
Length = 283
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 137/231 (59%), Gaps = 39/231 (16%)
Query: 77 VPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIK 136
+ + +E+ +KE W ++K L I + LD+ G + V TT+ T DP+ IIK RD +K
Sbjct: 30 IVFPKYQEKKIKESWKIIKKILNSFSIYSHLDLSFGFILVSTTKFTNDPFSIIKGRDFLK 89
Query: 137 LLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNC 196
L+SR VP EQA ++ +D+I C+I+KI + +NK F+KRR+RLIG NG T+++IE++T
Sbjct: 90 LISRGVPVEQAAKIFEDEIICEILKISHFSKNKNIFLKRRRRLIGNNGSTVRAIEMITKT 149
Query: 197 YMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQV 256
++LVQG TV+ +G H GL QV
Sbjct: 150 FILVQGNTVSIMGNH---------------------------------------SGLKQV 170
Query: 257 RRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSK 307
R+IV+D M NIHPI++IK L+IK+EL+KD LK ENW+++LP K K ++
Sbjct: 171 RKIVQDCMNNIHPIFHIKNLIIKQELSKDKFLKKENWDQYLPLLKKKNFNQ 221
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 22 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
+KE W ++K L I + LD+ G + V TT+ T DP+ IIK RD +KL+SR VP E
Sbjct: 40 IKESWKIIKKILNSFSIYSHLDLSFGFILVSTTKFTNDPFSIIKGRDFLKLISRGVPVE 98
>gi|159112012|ref|XP_001706236.1| KRR1 [Giardia lamblia ATCC 50803]
gi|157434330|gb|EDO78562.1| KRR1 [Giardia lamblia ATCC 50803]
Length = 328
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 144/257 (56%), Gaps = 41/257 (15%)
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTW 123
K+ ++ + S S + +E Y+ W + N L + I AELD+ +G++TV TT KTW
Sbjct: 45 KSGALLDVSSFSTLFPMYREPYITSIWKDLANMLSSKYGIAAELDLQKGTITVQTTDKTW 104
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPN 183
DP I+ AR+MI +LSRS+ +EQA R ++++ CDII+I N+ K F+KRR R +GPN
Sbjct: 105 DPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDIIRIKNMASRKDSFIKRRARFVGPN 164
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQT 243
TLK+IELLT+ + VQG TVA +G +G+
Sbjct: 165 AQTLKAIELLTDTKIQVQGNTVAVMGASRGV----------------------------- 195
Query: 244 VAALGPHKGLLQVRRIVEDTM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKS 302
GL VR IV D + +NIHP+ +IK LMIKRELAK P++ NE+W RF+P FK
Sbjct: 196 --------GL--VRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKK 245
Query: 303 KTLSKRKMPKKRKTKSE 319
K K K K K E
Sbjct: 246 KNTKPYKPAKVAKRKRE 262
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 19/100 (19%)
Query: 10 PEFKKEDNP------------------HEYLKECWPLVKNALELHF-IKAELDVIEGSMT 50
PEF+ EDN Y+ W + N L + I AELD+ +G++T
Sbjct: 37 PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLANMLSSKYGIAAELDLQKGTIT 96
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKEC 90
V TT KTWDP I+ AR+MI +LSRS+ +E K + E
Sbjct: 97 VQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
>gi|253744746|gb|EET00901.1| KRR1 [Giardia intestinalis ATCC 50581]
Length = 328
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 144/257 (56%), Gaps = 41/257 (15%)
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTW 123
K+ ++ + S S + +E Y+ W + N L + I AELD+ +G++TV TT KTW
Sbjct: 45 KSGALLDVSSFSTLFPMYREPYITSIWSDLANMLSSKYGIAAELDLQKGTITVQTTDKTW 104
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPN 183
DP I+ AR+MI +LSRS+ +EQA R ++++ CDII+I N+ K F+KRR R +GPN
Sbjct: 105 DPAAILSARNMIWMLSRSMTFEQAKRCFENEVDCDIIRIKNMTPRKDSFIKRRARFVGPN 164
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQT 243
TLK+IELLT+ + VQG TVA +G +G+
Sbjct: 165 AQTLKAIELLTDTKIQVQGNTVAVMGASRGV----------------------------- 195
Query: 244 VAALGPHKGLLQVRRIVEDTM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKS 302
GL VR IV D + +NIHP+ +IK LMIKRELAK P++ NE+W RF+P FK
Sbjct: 196 --------GL--VRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKK 245
Query: 303 KTLSKRKMPKKRKTKSE 319
K K K K K E
Sbjct: 246 KNTKPYKPAKVAKRKCE 262
>gi|387597248|gb|EIJ94868.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm1]
Length = 294
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 147/269 (54%), Gaps = 41/269 (15%)
Query: 59 DPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFT 118
+P+ + ++ S V + +E+Y++E ++ AL + +D E + V T
Sbjct: 32 EPFTEKGLKQFLETSSFEVMFPKHREKYIRETEEYIRKALAQRRLALIVDYHELILKVET 91
Query: 119 TRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQR 178
T T DPY+I++ RD +KL+SR VP E+A+RV +D I+ DII I +NK+ F+KRR+R
Sbjct: 92 TPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRRER 151
Query: 179 LIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYML 238
LIGP G T+KS+ELLT+CY+L G TV+A+G
Sbjct: 152 LIGPRGNTIKSLELLTDCYILSFGNTVSAIG----------------------------- 182
Query: 239 VQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
+K L +VR +V M+NIHPIY IK LMI+REL KDP LK ENWER++P
Sbjct: 183 ----------NYKSLKEVRNVVTKCMENIHPIYEIKKLMIRRELEKDPALKTENWERYMP 232
Query: 299 NFKSKTLSKRKMPKKRKTKSEYTPFPPPQ 327
+K KRK+ KT FP P+
Sbjct: 233 QYKKTHSKKRKVTIVEKTYR--NTFPEPE 259
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y++E ++ AL + +D E + V TT T DPY+I++ RD +KL+SR VP E
Sbjct: 59 YIRETEEYIRKALAQRRLALIVDYHELILKVETTPHTRDPYVIMEGRDALKLVSRGVPLE 118
>gi|378755182|gb|EHY65209.1| ribosomal RNA assembly protein mis3 [Nematocida sp. 1 ERTm2]
Length = 294
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 142/246 (57%), Gaps = 49/246 (19%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E+Y+++ ++ AL + +D E + V TT T DPY++++ RDM+KL+SR V
Sbjct: 56 REKYIRDTEEYIRKALAQKTLLLAVDYHELVLKVETTPHTRDPYVVLQGRDMLKLVSRGV 115
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
P E+A+RV +D I+ DII I +NK+ F+KRR+RL+GP G T+KS+ELLT+CY+L G
Sbjct: 116 PLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRRERLLGPRGNTIKSLELLTDCYILPFG 175
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
TV+A+G +K L +VR +V
Sbjct: 176 NTVSAIG---------------------------------------NYKSLKEVRTVVTK 196
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT----KS 318
M+NIHPIY IK LMI+REL KDP LK ENWER+LP +K KT S KKRKT K+
Sbjct: 197 CMENIHPIYEIKRLMIRRELEKDPALKTENWERYLPKYK-KTHS-----KKRKTVIVEKT 250
Query: 319 EYTPFP 324
T FP
Sbjct: 251 NRTTFP 256
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+++ ++ AL + +D E + V TT T DPY++++ RDM+KL+SR VP E
Sbjct: 59 YIRDTEEYIRKALAQKTLLLAVDYHELVLKVETTPHTRDPYVVLQGRDMLKLVSRGVPLE 118
>gi|387593593|gb|EIJ88617.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm3]
Length = 294
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 147/269 (54%), Gaps = 41/269 (15%)
Query: 59 DPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFT 118
+P+ + ++ S V + +E+Y++E ++ AL + +D E + V T
Sbjct: 32 EPFTEKGLKQFLETSSFEVMFPKHREKYIRETEEYIRKALAQRRLALIVDYHELILKVET 91
Query: 119 TRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQR 178
T T DPY+I++ RD +KL+SR VP E+A+RV +D I+ DII I +NK+ F+KRR+R
Sbjct: 92 TPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRRER 151
Query: 179 LIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYML 238
LIGP G T+KS+ELLT+CY+L G TV+A+G
Sbjct: 152 LIGPRGNTIKSLELLTDCYILSFGNTVSAIG----------------------------- 182
Query: 239 VQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
+K L +VR +V M+NIHPIY IK LMI+REL KDP LK ENWER++P
Sbjct: 183 ----------NYKSLKEVRNVVTMCMENIHPIYEIKKLMIRRELEKDPALKTENWERYMP 232
Query: 299 NFKSKTLSKRKMPKKRKTKSEYTPFPPPQ 327
+K KRK+ KT FP P+
Sbjct: 233 QYKKTHSKKRKVTIVEKTYR--NTFPEPE 259
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y++E ++ AL + +D E + V TT T DPY+I++ RD +KL+SR VP E
Sbjct: 59 YIRETEEYIRKALAQRRLALIVDYHELILKVETTPHTRDPYVIMEGRDALKLVSRGVPLE 118
>gi|399949834|gb|AFP65491.1| Rev interacting protein Rip-1-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 282
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 139/229 (60%), Gaps = 39/229 (17%)
Query: 77 VPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIK 136
+ + +E+Y++E W ++ L+ +FIK LD+ GS+T+ TT+ T DP +I+KAR +
Sbjct: 29 IIFPKYQEKYIRESWKIIYRILKSYFIKPFLDISNGSITITTTKFTKDPCVILKARAFLL 88
Query: 137 LLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNC 196
L+SRSVP +QA ++ D+IS DIIKI + +NK+ F+KRR+RLIG NG T+++IE+ T
Sbjct: 89 LISRSVPVQQAAKIFDDEISFDIIKISSFTRNKKLFLKRRKRLIGLNGSTIRAIEMATQT 148
Query: 197 YMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQV 256
YMLVQG TV+ +G H G+ QS
Sbjct: 149 YMLVQGNTVSCMGTHAGIKQS--------------------------------------- 169
Query: 257 RRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
R+IVED MKN+HPI++IK LM K+EL+KDP L+ +WE+++P K L
Sbjct: 170 RKIVEDCMKNVHPIFHIKILMTKQELSKDPTLQFVSWEKYIPFLNKKNL 218
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
+Y++E W ++ L+ +FIK LD+ GS+T+ TT+ T DP +I+KAR + L+SRSVP
Sbjct: 37 KYIRESWKIIYRILKSYFIKPFLDISNGSITITTTKFTKDPCVILKARAFLLLISRSVPV 96
Query: 80 E 80
+
Sbjct: 97 Q 97
>gi|323305860|gb|EGA59597.1| Krr1p [Saccharomyces cerevisiae FostersB]
Length = 196
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 112/175 (64%), Gaps = 42/175 (24%)
Query: 155 ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
++CD+IKIGN V NK+RFVKRRQRL+G
Sbjct: 1 MACDVIKIGNFVTNKERFVKRRQRLVG--------------------------------- 27
Query: 215 LQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIK 274
PNG TLK++ELLT CY+LVQG TV+A+GP KGL +VRR+VED MKNIHPIY+IK
Sbjct: 28 ------PNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIK 81
Query: 275 ALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKT--KSEYTPFPPPQ 327
LMIKRELAK P+L NE+W RFLP FK + ++ RK PKK + K YTPFPP Q
Sbjct: 82 ELMIKRELAKRPELANEDWSRFLPMFKKRNVA-RKKPKKIRNVEKKVYTPFPPAQ 135
>gi|357120775|ref|XP_003562100.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 349
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 149/228 (65%), Gaps = 38/228 (16%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
M+++ S S + +E+YL+E WP V+ AL + EL++++ +TV TTRKT DPYII
Sbjct: 43 MLEVSSFSTRFPRYEEKYLQEAWPTVQGALRDFGVTCELNLVKECITVSTTRKTRDPYII 102
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
IKARD+I LL+R VP QA+++L D+++CDIIKI N+++N +RFV+RR+R++GPN T K
Sbjct: 103 IKARDLIVLLARGVPAPQAIKILDDEMTCDIIKIRNIIRNNERFVRRRRRILGPNLSTRK 162
Query: 189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
+IE+LT CY+LVQG TVAA+GP G
Sbjct: 163 AIEILTGCYILVQGGTVAAMGPSNG----------------------------------- 187
Query: 249 PHKGLLQVRRIVEDTMKNI-HPIYNIKALMIKRELAKDPKLKNENWER 295
+GL QVRRIVED MKNI HP+Y+IK L+IKRE AK+ + NE+W+R
Sbjct: 188 --RGLKQVRRIVEDCMKNIKHPMYHIKDLLIKREQAKNATVANESWDR 233
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 3 NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 62
+++S + P ++ +YL+E WP V+ AL + EL++++ +TV TTRKT DPYI
Sbjct: 47 SSFSTRFPRYE-----EKYLQEAWPTVQGALRDFGVTCELNLVKECITVSTTRKTRDPYI 101
Query: 63 IIKARDMIKLLSRSVP 78
IIKARD+I LL+R VP
Sbjct: 102 IIKARDLIVLLARGVP 117
>gi|291000911|ref|XP_002683022.1| predicted protein [Naegleria gruberi]
gi|284096651|gb|EFC50278.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 150/246 (60%), Gaps = 44/246 (17%)
Query: 83 KEEYLKECWPLVKNALELH--FIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSR 140
+E+YLKE + ++++ L ++K L+ EG + + TT +T+DP+II K RD ++L+SR
Sbjct: 30 REQYLKEHFTVIESTLGASPFYLKTTLNCKEGKIIIETTERTFDPFIIFKGRDCLQLVSR 89
Query: 141 SVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLV 200
V +E+A RVL+D++ +++KIGNL +NK+ F KRRQRL GP+G TLK+++LLT C++ +
Sbjct: 90 GVAFEEAKRVLEDNVFSEVMKIGNLCRNKEVFTKRRQRLFGPDGSTLKALQLLTGCFIFI 149
Query: 201 QGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIV 260
QG+TV+ +G NG L S E++T+C
Sbjct: 150 QGKTVSVIGE----------VNGIKLVS-EVITDC------------------------- 173
Query: 261 EDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS--KRKMPKKRKTKS 318
M NIHPIY+IK LM+K+EL + N +W+++LP FK KT++ K KK+ K
Sbjct: 174 ---MNNIHPIYHIKQLMVKKELKNSSEYANVSWDKYLPKFK-KTVNKSIVKKKKKKIQKK 229
Query: 319 EYTPFP 324
EYTPFP
Sbjct: 230 EYTPFP 235
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 9 IPEFKKEDNPHEYLKECWPLVKNALELH--FIKAELDVIEGSMTVFTTRKTWDPYIIIKA 66
PE++++ YLKE + ++++ L ++K L+ EG + + TT +T+DP+II K
Sbjct: 26 FPEYREQ-----YLKEHFTVIESTLGASPFYLKTTLNCKEGKIIIETTERTFDPFIIFKG 80
Query: 67 RDMIKLLSRSVPYEPLK 83
RD ++L+SR V +E K
Sbjct: 81 RDCLQLVSRGVAFEEAK 97
>gi|194387246|dbj|BAG59987.1| unnamed protein product [Homo sapiens]
Length = 177
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 102/122 (83%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL H + A LD+IEGSMTV TT+KT+DPY
Sbjct: 52 RGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPY 111
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
III+ARD+IKLL+RSV +EQAV++LQDD++CDIIKIG+LV+NK+RFVKRRQRLIGP G T
Sbjct: 112 IIIRARDLIKLLARSVSFEQAVQILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGST 171
Query: 187 LK 188
LK
Sbjct: 172 LK 173
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F KEDNP YLKECWPLV+ AL H + A LD+I
Sbjct: 38 DGW--KEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLI 95
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPYIII+ARD+IKLL+RSV +E
Sbjct: 96 EGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFE 130
>gi|256068106|ref|XP_002570691.1| hypothetical protein [Schistosoma mansoni]
Length = 180
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 132/212 (62%), Gaps = 42/212 (19%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
I+ E+DV E +M V TT KT+DP+II+KARD+I+LL+RSVP EQA+RVL D+ DII+I
Sbjct: 2 IRVEIDVAESTMEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEI 61
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPN 222
+ N++RFVKRR RLIG +G TLK++EL TNCY++VQG+TV+ +G
Sbjct: 62 N--LTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVG------------- 106
Query: 223 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTM-KNIHPIYNIKALMIKRE 281
+ L +VR+IV+ + NIHP Y+IK L+I ++
Sbjct: 107 --------------------------RYNDLKEVRKIVQGCIYDNIHPAYSIKRLLIIKK 140
Query: 282 LAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
L+ DP +N +W+RFLP K K LS+R+ P K
Sbjct: 141 LSMDPTKQNISWDRFLPKMKKKVLSRRRKPHK 172
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 38 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
I+ E+DV E +M V TT KT+DP+II+KARD+I+LL+RSVP E
Sbjct: 2 IRVEIDVAESTMEVRTTPKTFDPFIILKARDVIRLLARSVPME 44
>gi|353233461|emb|CCD80816.1| hypothetical protein Smp_115060 [Schistosoma mansoni]
Length = 168
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 124/201 (61%), Gaps = 42/201 (20%)
Query: 114 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFV 173
M V TT KT+DP+II+KARD+I+LL+RSVP EQA+RVL D+ DII+I + N++RFV
Sbjct: 1 MEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEIN--LTNRERFV 58
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233
KRR RLIG +G TLK++EL TNCY++VQG+TV+ +G
Sbjct: 59 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVG------------------------ 94
Query: 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTM-KNIHPIYNIKALMIKRELAKDPKLKNEN 292
+ L +VR+IV+ + NIHP Y+IK L+I ++L+ DP +N +
Sbjct: 95 ---------------RYNDLKEVRKIVQGCIYDNIHPAYSIKRLLIIKKLSMDPTKQNIS 139
Query: 293 WERFLPNFKSKTLSKRKMPKK 313
W+RFLP K K LS+R+ P K
Sbjct: 140 WDRFLPKMKKKVLSRRRKPHK 160
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 49 MTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
M V TT KT+DP+II+KARD+I+LL+RSVP E
Sbjct: 1 MEVRTTPKTFDPFIILKARDVIRLLARSVPME 32
>gi|303388924|ref|XP_003072695.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
gi|303301837|gb|ADM11335.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
Length = 282
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 39/228 (17%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIK 130
++ S +V + +E+Y+++ ++ ALE I ++D+ E ++ V T R T DP+I +K
Sbjct: 18 EMSSETVMFPKYREKYIEQTQKYIEKALEAKKISCKIDMGERTIDVMTNRSTRDPFIFVK 77
Query: 131 ARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSI 190
A + +KL+SR V E+A++VL+D+ C+++ I + +++ F KRR RLIGP TLK+I
Sbjct: 78 AVNFVKLVSRGVGIEEAMKVLEDEYFCEVVDIKKMASSEKVFEKRRDRLIGPKEMTLKAI 137
Query: 191 ELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 250
++LT C++LV G+TV+ +G
Sbjct: 138 QILTKCHVLVHGKTVSIIG---------------------------------------SF 158
Query: 251 KGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
KG+ +V++IV D M NIHP+Y I++L+ KR+L +D + E+W RFLP
Sbjct: 159 KGIEEVKKIVVDCMNNIHPMYQIRSLIEKRKLEEDKSKEGEDWSRFLP 206
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+++ ++ ALE I ++D+ E ++ V T R T DP+I +KA + +KL+SR V E
Sbjct: 33 YIEQTQKYIEKALEAKKISCKIDMGERTIDVMTNRSTRDPFIFVKAVNFVKLVSRGVGIE 92
Query: 81 P----LKEEYLKECWPLVKNA 97
L++EY E + K A
Sbjct: 93 EAMKVLEDEYFCEVVDIKKMA 113
>gi|162606356|ref|XP_001713208.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
gi|12580674|emb|CAC26992.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
Length = 262
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 140/270 (51%), Gaps = 44/270 (16%)
Query: 44 VIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFI 103
++ +M F +K++D I ++I++ + + +E Y+KE W ++ +++ I
Sbjct: 4 ILSNAMNKF--KKSFDG---INITNLIEVSCFKIKFPKYQENYIKENWHIINRIMKIRSI 58
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
++V G + + + K +DPY IIKA+D I L+ R VP QA ++ +DDI C+IIKI
Sbjct: 59 VVTINVNLGLVEIMNSLKGFDPYSIIKAKDFITLVCRGVPIFQASKIFKDDIFCEIIKIS 118
Query: 164 NLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNG 223
++Q F+K+R+RLIG NG T+K+IELLT CY+L+QG TVA +G + L
Sbjct: 119 KFTSSRQSFLKKRKRLIGNNGVTVKTIELLTKCYILIQGNTVACMGKFRDL-------KW 171
Query: 224 CTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELA 283
C I+ +M N HPI+ +K + IK++L
Sbjct: 172 CI--------------------------------NIITKSMTNNHPIFYLKNIQIKKKLM 199
Query: 284 KDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
D K +NW+++L K TL + KK
Sbjct: 200 NDEFFKTKNWDKYLLFEKKNTLFNLESKKK 229
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 4 AWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 63
+ +K P+++ Y+KE W ++ +++ I ++V G + + + K +DPY I
Sbjct: 29 CFKIKFPKYQ-----ENYIKENWHIINRIMKIRSIVVTINVNLGLVEIMNSLKGFDPYSI 83
Query: 64 IKARDMIKLLSRSVP 78
IKA+D I L+ R VP
Sbjct: 84 IKAKDFITLVCRGVP 98
>gi|401825966|ref|XP_003887077.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998235|gb|AFM98096.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 278
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 39/231 (16%)
Query: 68 DMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
+ +++ S SV Y +E+Y+++ + ALE I +D+ + + V T + T DP+I
Sbjct: 15 EFVEVSSESVMYPKYREKYIEQTQKYIVKALEGKKISCNIDLEKRIIDVATNKSTRDPFI 74
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
IKA + +KL+SR V E+A++VL+D+ C++I I L + + F KRR RLIGP TL
Sbjct: 75 FIKAVNFVKLVSRGVGVEEAMKVLEDEYFCEVIDIKRLASSDKVFEKRRDRLIGPKEMTL 134
Query: 188 KSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAAL 247
K+I++LT CY+LV G+TV+ +G
Sbjct: 135 KAIQILTKCYVLVHGKTVSIIG-------------------------------------- 156
Query: 248 GPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
KG+ +V++IV D M NIHP+Y IK L+ KR+L D + E+W RFLP
Sbjct: 157 -SFKGIEEVKKIVIDCMNNIHPMYQIKKLVEKRKLEGDKTKEGEDWSRFLP 206
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+++ + ALE I +D+ + + V T + T DP+I IKA + +KL+SR V E
Sbjct: 33 YIEQTQKYIVKALEGKKISCNIDLEKRIIDVATNKSTRDPFIFIKAVNFVKLVSRGVGVE 92
Query: 81 P----LKEEYLKE 89
L++EY E
Sbjct: 93 EAMKVLEDEYFCE 105
>gi|449328995|gb|AGE95270.1| hypothetical protein ECU04_0510 [Encephalitozoon cuniculi]
Length = 283
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 39/232 (16%)
Query: 68 DMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
+ ++ S +V + +E+Y+++ + ALE I +D+ + + V T R T DP+I
Sbjct: 15 EFAEMSSEAVMFPKYREKYIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFI 74
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
IKA + +KL+ R V E+A++VL+D+ C++I I +V + + F KRR RL+GP TL
Sbjct: 75 FIKAVNFVKLVGRGVGIEEAMKVLEDEYFCEVIDIKKMVSSDKVFEKRRDRLVGPKEMTL 134
Query: 188 KSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAAL 247
K+I++LT CY+LV G+TV+ +G +G+ ++
Sbjct: 135 KAIQILTRCYVLVHGKTVSIIGSFRGVEEA------------------------------ 164
Query: 248 GPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPN 299
++IV D M NIHP+Y IK L+ KR++ D +NE+W RFLP
Sbjct: 165 ---------KKIVVDCMNNIHPMYQIKRLVEKRKMESDETKENEDWSRFLPQ 207
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+++ + ALE I +D+ + + V T R T DP+I IKA + +KL+ R V E
Sbjct: 33 YIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIKAVNFVKLVGRGVGIE 92
Query: 81 P----LKEEYLKECWPLVK 95
L++EY E + K
Sbjct: 93 EAMKVLEDEYFCEVIDIKK 111
>gi|19074128|ref|NP_584734.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19068770|emb|CAD25238.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
Length = 283
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 39/232 (16%)
Query: 68 DMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
+ ++ S +V + +E+Y+++ + ALE I +D+ + + V T R T DP+I
Sbjct: 15 EFAEMSSEAVMFPKYREKYIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFI 74
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
IKA + +KL+ R V E+A++VL+D+ C++I I +V + + F KRR RL+GP TL
Sbjct: 75 FIKAVNFVKLVGRGVGIEEAMKVLEDEYFCEVIDIKKMVSSDKVFEKRRDRLVGPKEMTL 134
Query: 188 KSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAAL 247
K+I++LT CY+LV G+TV+ +G +G+ ++
Sbjct: 135 KAIQILTRCYVLVHGKTVSIIGGFRGVEEA------------------------------ 164
Query: 248 GPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPN 299
++IV D M NIHP+Y IK L+ KR++ D +NE+W RFLP
Sbjct: 165 ---------KKIVVDCMNNIHPMYQIKRLVEKRKMESDETKENEDWSRFLPQ 207
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+++ + ALE I +D+ + + V T R T DP+I IKA + +KL+ R V E
Sbjct: 33 YIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIKAVNFVKLVGRGVGIE 92
Query: 81 P----LKEEYLKECWPLVK 95
L++EY E + K
Sbjct: 93 EAMKVLEDEYFCEVIDIKK 111
>gi|396081198|gb|AFN82816.1| putative RNA-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 281
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 39/231 (16%)
Query: 68 DMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
+ +++ S +V + +E+Y+++ + ALE I ++D+ + + V T + T DP+I
Sbjct: 15 EFVEMSSEAVMFPKYREKYIEQTQKYIIKALEGKKISCKIDLEKRVIDVETNKSTRDPFI 74
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
IKA + +KL+SR V E+A++VL+D+ C++I I L + + F KRR RLIGP TL
Sbjct: 75 FIKAVNFVKLVSRGVGVEEAMKVLEDEYFCEVIDIKKLASSDKVFEKRRDRLIGPKEMTL 134
Query: 188 KSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAAL 247
K+I++LT CY+LV G+TV+ +G
Sbjct: 135 KAIQILTKCYVLVHGKTVSIIG-------------------------------------- 156
Query: 248 GPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
+G+ +V++IV D M NIHP+Y IK L+ KR+L D + E+W RFLP
Sbjct: 157 -SFRGIEEVKKIVIDCMNNIHPMYQIKKLVEKRKLEGDITKEGEDWSRFLP 206
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+++ + ALE I ++D+ + + V T + T DP+I IKA + +KL+SR V E
Sbjct: 33 YIEQTQKYIIKALEGKKISCKIDLEKRVIDVETNKSTRDPFIFIKAVNFVKLVSRGVGVE 92
Query: 81 P----LKEEYLKECWPLVKNA 97
L++EY E + K A
Sbjct: 93 EAMKVLEDEYFCEVIDIKKLA 113
>gi|330040298|ref|XP_003239843.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
gi|327206768|gb|AEA38945.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
Length = 241
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 39/229 (17%)
Query: 77 VPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIK 136
V + +E +KE W +K + +K +L++ G + + + T DP++IIKARD +K
Sbjct: 25 VLFPKYQENCIKESWKTIKKIFFFYKLKLKLNLKFGFIEISNSLNTKDPFVIIKARDFVK 84
Query: 137 LLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNC 196
L++RSVP QA ++ D I CDIIKI NK F+K+R+ LIG G +K IE++T C
Sbjct: 85 LIARSVPVRQAAKIFDDQIFCDIIKISRSNCNKFNFLKKRKNLIGKKGIVVKIIEVITQC 144
Query: 197 YMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQV 256
Y+++QG TV+ +G H G+ V
Sbjct: 145 YLIIQGNTVSCMG---------------------------------------QHLGIKYV 165
Query: 257 RRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTL 305
R IVE++ IHPI IK L++K++L K N+NWE++LP F +K L
Sbjct: 166 RNIVENSTFKIHPILYIKMLIMKQKLYNILKFNNQNWEKYLPFFNTKKL 214
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 22 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
+KE W +K + +K +L++ G + + + T DP++IIKARD +KL++RSVP
Sbjct: 35 IKESWKTIKKIFFFYKLKLKLNLKFGFIEISNSLNTKDPFVIIKARDFVKLIARSVP 91
>gi|149066985|gb|EDM16718.1| rCG48818, isoform CRA_b [Rattus norvegicus]
Length = 198
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 81/96 (84%)
Query: 238 LVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFL 297
+VQG TV+A+GP GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFL
Sbjct: 1 MVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFL 60
Query: 298 PNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
P FK K ++KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 61 PQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQVD 96
>gi|148689795|gb|EDL21742.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_a [Mus musculus]
Length = 198
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 80/94 (85%)
Query: 238 LVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFL 297
+VQG TV+A+GP GL +VR++V DTMKNIHPIYNIK LMIKRELAKD +L++++WERFL
Sbjct: 1 MVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFL 60
Query: 298 PNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESE 331
P FK K ++KRK PKK+ K EYTPFPPPQPES+
Sbjct: 61 PQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 94
>gi|300709315|ref|XP_002996823.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
gi|239606149|gb|EEQ83152.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
Length = 228
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 128/228 (56%), Gaps = 40/228 (17%)
Query: 77 VPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIK 136
V Y +++Y+++ + ALE + +D +E S+ VFT KT DP+I +K D I+
Sbjct: 23 VYYPKYRDKYIEQVNKYIIKALENKKLSCNIDSVERSIEVFTNTKTRDPFIFVKGCDFIR 82
Query: 137 LLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNC 196
L++++V E A++VL+D+ +II+I +V++++ F KRR RLIG N LK++++++ C
Sbjct: 83 LVAKNVDVETAMKVLEDEYCGEIIEIRKMVKSEKVFTKRRDRLIGKNSMVLKALKMISKC 142
Query: 197 YMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQV 256
Y+ + G+ + +G + GL TV V
Sbjct: 143 YIYITGKHIGVVGSYDGL----------------------------TV-----------V 163
Query: 257 RRIVEDTM-KNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSK 303
++IV D + N HPIY IK L++K +L +D +++NE+W+R +P++K +
Sbjct: 164 KQIVYDCIANNKHPIYEIKKLIVKNQLGEDKEMENEDWKRHIPDYKKR 211
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+++ + ALE + +D +E S+ VFT KT DP+I +K D I+L++++V E
Sbjct: 32 YIEQVNKYIIKALENKKLSCNIDSVERSIEVFTNTKTRDPFIFVKGCDFIRLVAKNVDVE 91
Query: 81 P----LKEEYLKECWPLVK 95
L++EY E + K
Sbjct: 92 TAMKVLEDEYCGEIIEIRK 110
>gi|402469222|gb|EJW04243.1| hypothetical protein EDEG_01475 [Edhazardia aedis USNM 41457]
Length = 331
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 41/241 (17%)
Query: 76 SVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMI 135
+V + +++Y+K+ ++ L +K E++ + + V TT KT DPYIIIK RD I
Sbjct: 24 TVVFPDWRKQYIKDKQEKIEELLTEKKLKLEVNYEDKILKVLTTNKTRDPYIIIKGRDFI 83
Query: 136 KLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQ--NKQRFVKRRQRLIGPNGCTLKSIELL 193
L+SR +E+A ++ D++ C++I I L + NK F R+ RL G NG T+K+++LL
Sbjct: 84 NLISRGAVFEEATKIFNDNVFCEVINIKQLAKSSNKAVFQNRKHRLEGKNGDTIKALQLL 143
Query: 194 TNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253
T Y+ ++G+++ +G +KG+
Sbjct: 144 TKTYITMEGKSLCVVG---------------------------------------KYKGI 164
Query: 254 LQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
+V IVE +N HP+Y +K L+ KREL D ++K+++W R LP +SK + R KK
Sbjct: 165 NEVSDIVEKVFQNQHPVYLLKRLLAKRELENDKEIKDQDWTRLLPEVRSKMKNTRGDGKK 224
Query: 314 R 314
+
Sbjct: 225 K 225
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 7 MKIPEFKKEDNPHE-----------------YLKECWPLVKNALELHFIKAELDVIEGSM 49
K+PEF +D E Y+K+ ++ L +K E++ + +
Sbjct: 3 FKVPEFNDDDYKDEFTEQSEFTVVFPDWRKQYIKDKQEKIEELLTEKKLKLEVNYEDKIL 62
Query: 50 TVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TT KT DPYIIIK RD I L+SR +E
Sbjct: 63 KVLTTNKTRDPYIIIKGRDFINLISRGAVFE 93
>gi|351712286|gb|EHB15205.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 219
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 81/98 (82%)
Query: 236 YMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWER 295
Y++++G TV+A+GP GL +VR++V DTMKNIHPIY IK LMIKRELAKD +L++++WER
Sbjct: 38 YIIIRGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYYIKTLMIKRELAKDSELRSQSWER 97
Query: 296 FLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
FL FK K ++KRK PKK+ K EYTPFPPPQPES+ +
Sbjct: 98 FLSQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQVD 135
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 38 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNA 97
I A LD+IEGSMTV T++KT+DPYIII+ +S P+ LK E K +KN
Sbjct: 15 INATLDLIEGSMTVCTSKKTFDPYIIIRG----NTVSAIGPFSGLK-EVRKVVLDTMKNI 69
Query: 98 LELHFIK 104
+++IK
Sbjct: 70 HPIYYIK 76
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKA 131
I A LD+IEGSMTV T++KT+DPYIII+
Sbjct: 15 INATLDLIEGSMTVCTSKKTFDPYIIIRG 43
>gi|342181643|emb|CCC91123.1| putative ribosomal RNA assembly protein [Trypanosoma congolense
IL3000]
Length = 177
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 18/151 (11%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E Y++ WP V+ L+ H + +LD++EGSMTV TTR+TWDPY I+KARD I+LL+R+VP
Sbjct: 40 ESYIRSIWPAVEMVLKQHQLTGKLDLMEGSMTVATTRRTWDPYSIVKARDFIRLLARNVP 99
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
QA ++ Q +I+CDII I ++ +RFVKRR RL+GP QG
Sbjct: 100 LAQAQKIFQTEITCDIIPISLKGKSTRRFVKRRDRLVGP------------------QGS 141
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTN 234
G GLL+S G N C S + L+
Sbjct: 142 DTKGTGNTHGLLRSCAGENSCGYGSCKRLST 172
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E ++ + P + + Y++ WP V+ L+ H + +LD++EGSMTV TTR+TWDPY
Sbjct: 28 ETTFATQFPSYLES-----YIRSIWPAVEMVLKQHQLTGKLDLMEGSMTVATTRRTWDPY 82
Query: 62 IIIKARDMIKLLSRSVP 78
I+KARD I+LL+R+VP
Sbjct: 83 SIVKARDFIRLLARNVP 99
>gi|429966251|gb|ELA48248.1| hypothetical protein VCUG_00289 [Vavraia culicis 'floridensis']
Length = 246
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 39/237 (16%)
Query: 77 VPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIK 136
+ Y E+ LKE + ++ L I+ ++D E + V TT KT DPY+I+K++D +
Sbjct: 20 IVYAKHLEDSLKESYKSMRTLLREKNIRIKMDRDERLIQVSTTSKTRDPYVILKSKDFVT 79
Query: 137 LLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNC 196
L+ + VP E+A +V D++S I I L +K+ F+ RR RLIGPNG TL ++++LT
Sbjct: 80 LICKGVPLEEAQKVFDDNMSYAWINIQALASDKEVFINRRNRLIGPNGDTLTALKMLTKT 139
Query: 197 YMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQV 256
Y+LV+ ++V +GP +LQV
Sbjct: 140 YILVKSKSVCVIGP---------------------------------------FASVLQV 160
Query: 257 RRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
+ V M+N HP++ +K +M K+E+ + K+ NW+ F+P K K +K+ ++
Sbjct: 161 EQFVLKVMENYHPVHLLKQMMAKKEVEQCADKKDMNWKNFVPVVKKKIGGSKKVKRQ 217
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 19 HEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
+ LKE + ++ L I+ ++D E + V TT KT DPY+I+K++D + L+ + VP
Sbjct: 27 EDSLKESYKSMRTLLREKNIRIKMDRDERLIQVSTTSKTRDPYVILKSKDFVTLICKGVP 86
Query: 79 YE 80
E
Sbjct: 87 LE 88
>gi|440491940|gb|ELQ74542.1| rRNA processing protein [Trachipleistophora hominis]
Length = 246
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 39/230 (16%)
Query: 84 EEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143
E LKE +K L+ ++ +++ E + + TT KT DPY+IIK++D I L+ + VP
Sbjct: 27 ESTLKENQKRIKALLKEKNVRIKINYDERVVQMSTTSKTRDPYVIIKSKDFITLVCKGVP 86
Query: 144 YEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
++A R+ D+IS ++ I L NK+ F+ RR RLIGPNG TLK++E+LT Y+L++ +
Sbjct: 87 LQEAERIFDDEISYAMLNIQQLASNKEVFINRRNRLIGPNGDTLKALEMLTKTYILMKSK 146
Query: 204 TVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDT 263
V +G +L+V + V
Sbjct: 147 CV---------------------------------------CVIGSFANVLKVEQFVLKV 167
Query: 264 MKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKK 313
M+N HP++ +K L+ K+E+ + + K+ NW+ F+P K KT ++ +K
Sbjct: 168 MENYHPVHLLKQLVAKKEVEQCTEKKDMNWKNFVPVVKKKTGGSKQTKRK 217
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 22 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
LKE +K L+ ++ +++ E + + TT KT DPY+IIK++D I L+ + VP +
Sbjct: 30 LKENQKRIKALLKEKNVRIKINYDERVVQMSTTSKTRDPYVIIKSKDFITLVCKGVPLQ 88
>gi|429962930|gb|ELA42474.1| hypothetical protein VICG_00573 [Vittaforma corneae ATCC 50505]
Length = 289
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 43/217 (19%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+ +YLK A E+ + E+D + +M V TT +T DPYIIIKA +MI+LL R V
Sbjct: 44 RAQYLKGVESYAIKACEVKKVHFEVDYDKFTMRVSTTDRTRDPYIIIKAYEMIQLLGRGV 103
Query: 143 PYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG 202
E AV+VL+D I+ ++++ L ++ F +RRQRL P
Sbjct: 104 TLENAVKVLEDGIASEVLQARMLCSTEKIFERRRQRLSNPK------------------- 144
Query: 203 QTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVED 262
L+SIEL+T ++L+ +TV +G +KG+ + + I+
Sbjct: 145 ----------------------ILQSIELITKTHVLISNKTVCIVGEYKGVHEAKNIIIK 182
Query: 263 TMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPN 299
+NIHP + +K L+IK++L KD +WERFLPN
Sbjct: 183 CFENIHPAFELKRLIIKKKLMKDNA--EGDWERFLPN 217
>gi|149478667|ref|XP_001516023.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 179
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 65/76 (85%)
Query: 256 VRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRK 315
VR++V DTMKNIHPIYNIK LMIKREL+KD +L+ +NWERFLP FK K L+KRK P K+K
Sbjct: 1 VRKVVLDTMKNIHPIYNIKTLMIKRELSKDSELRTQNWERFLPKFKHKNLNKRKEPNKKK 60
Query: 316 TKSEYTPFPPPQPESE 331
K EYTPFPPPQPES+
Sbjct: 61 VKKEYTPFPPPQPESQ 76
>gi|296086789|emb|CBI32938.3| unnamed protein product [Vitis vinifera]
Length = 96
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 78/132 (59%), Gaps = 40/132 (30%)
Query: 155 ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+ C+IIKIGNLV+NK+RFVKRRQ L+GPN TLK++E+LT CY LVQG TV A+G K
Sbjct: 1 MQCNIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYTLVQGNTVTAMGSFK-- 58
Query: 215 LQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKN-IHPIYNI 273
GL QVRR+VED ++N +HP+Y++
Sbjct: 59 -------------------------------------GLKQVRRVVEDCIQNKMHPVYHV 81
Query: 274 KALMIKRELAKD 285
K LM+KRELA +
Sbjct: 82 KTLMMKRELASE 93
>gi|269860430|ref|XP_002649936.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
gi|220066623|gb|EED44098.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
Length = 220
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 43/232 (18%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
+ +++ SV + + Y+K ++ A+E + E++ +M V T + T DPY
Sbjct: 15 HEFVEMTEYSVLFAKSRSNYIKSIEKYLQKAVEAKKLTFEINWNTNTMFVRTNKMTRDPY 74
Query: 127 IIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCT 186
IIIKA+++++L+S+ V E + +L+D + +II I L +N + RR RL P
Sbjct: 75 IIIKAQELLELISKGVLLENCINLLEDGVFSEIIYINVLTRNPTVYENRRNRLSNPK--- 131
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAA 246
LK++E+L+ + V +TV
Sbjct: 132 --------------------------------------VLKALEILSKTKITVGTKTVCV 153
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLP 298
+G H G+ VR +V KNIHP Y IKALMIK +L+KD +W+RFLP
Sbjct: 154 VGDHDGIDVVRNVVLKAFKNIHPAYEIKALMIKHKLSKDNI--EGDWDRFLP 203
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 21 YLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
Y+K ++ A+E + E++ +M V T + T DPYIIIKA+++++L+S+ V E
Sbjct: 34 YIKSIEKYLQKAVEAKKLTFEINWNTNTMFVRTNKMTRDPYIIIKAQELLELISKGVLLE 93
>gi|345310359|ref|XP_001517030.2| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 207
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 65/80 (81%)
Query: 67 RDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 126
R +++ S + + +E YLKECWPLV+ AL+ H +KA LD+IEGSMTV TT+KT+DPY
Sbjct: 128 RGLLEESSFATLFPKYREAYLKECWPLVQKALQEHHVKATLDLIEGSMTVCTTKKTFDPY 187
Query: 127 IIIKARDMIKLLSRSVPYEQ 146
+II+ARD+IKLL+RSVP+EQ
Sbjct: 188 VIIRARDLIKLLARSVPFEQ 207
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 65/95 (68%), Gaps = 19/95 (20%)
Query: 3 NAWSMKIPEFKKEDNP-----------------HEYLKECWPLVKNALELHFIKAELDVI 45
+ W K P F K+DNP YLKECWPLV+ AL+ H +KA LD+I
Sbjct: 114 DGW--KEPTFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALQEHHVKATLDLI 171
Query: 46 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
EGSMTV TT+KT+DPY+II+ARD+IKLL+RSVP+E
Sbjct: 172 EGSMTVCTTKKTFDPYVIIRARDLIKLLARSVPFE 206
>gi|47180661|emb|CAG14635.1| unnamed protein product [Tetraodon nigroviridis]
Length = 109
Score = 99.0 bits (245), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/90 (56%), Positives = 61/90 (67%), Gaps = 17/90 (18%)
Query: 8 KIPEFKKEDNPH-----------------EYLKECWPLVKNALELHFIKAELDVIEGSMT 50
K P F KEDNPH YLKECWPLV+ AL IKA LD+IEGS+T
Sbjct: 13 KEPSFTKEDNPHGLLEESSFATLFPKYREAYLKECWPLVEKALSDVHIKASLDLIEGSVT 72
Query: 51 VFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
V TTRKT+DPY II+ARD++KL++RSVP+E
Sbjct: 73 VCTTRKTFDPYAIIRARDLVKLIARSVPFE 102
Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV 142
+E YLKECWPLV+ AL IKA LD+IEGS+TV TTRKT+DPY II+ARD++KL++RSV
Sbjct: 40 REAYLKECWPLVEKALSDVHIKASLDLIEGSVTVCTTRKTFDPYAIIRARDLVKLIARSV 99
Query: 143 PYEQAVRVL 151
P+EQ + L
Sbjct: 100 PFEQVIIAL 108
>gi|294951882|ref|XP_002787157.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
gi|239901838|gb|EER18953.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 247 LGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS 306
+G HK L QVRRIVED N+HP+Y++K LMIK+EL K+ LK+ENW+RFLP+FK++ +
Sbjct: 1 MGTHKALKQVRRIVEDCFHNVHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQ 60
Query: 307 K 307
+
Sbjct: 61 R 61
>gi|429329210|gb|AFZ80969.1| hypothetical protein BEWA_003770 [Babesia equi]
Length = 84
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 4/63 (6%)
Query: 220 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIK 279
GP G TLK++ELLT CY+L QGQTV+ KG+ RRIVED MKN+HP+Y+IK MIK
Sbjct: 18 GPGGSTLKALELLTECYILTQGQTVSI----KGIKVARRIVEDCMKNVHPVYHIKEFMIK 73
Query: 280 REL 282
R+L
Sbjct: 74 RDL 76
>gi|432096557|gb|ELK27204.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 183
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 52/64 (81%)
Query: 269 PIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQP 328
P + K LMIKRELAKD +L++++WERFLP FK K ++KRK PKK+ K EYTPFPPPQP
Sbjct: 43 PTVHFKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQP 102
Query: 329 ESEA 332
ES+A
Sbjct: 103 ESQA 106
>gi|335775908|gb|AEH58729.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 159
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 48/56 (85%)
Query: 276 LMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESE 331
LMIKRELAKD +L++++WERFLP FK K ++KRK PKK+ K EYTPFPPPQPES+
Sbjct: 1 LMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 56
>gi|312136521|ref|YP_004003858.1| kh domain-containing protein [Methanothermus fervidus DSM 2088]
gi|311224240|gb|ADP77096.1| KH domain protein [Methanothermus fervidus DSM 2088]
Length = 188
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K E+D G +T+ ++ DP ++KARD+++ + R E A+R+L +D+ D+I I
Sbjct: 35 KLEIDSESGMVTIIPKSESIDPMYVLKARDIVRAIGRGFSPEVALRLLNEDVMLDVIDIS 94
Query: 164 NLVQNKQRFVKRRQ-RLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ V ++ ++R++ R+IG +G T + IE +T + V G+TVA +G
Sbjct: 95 DYVGRSKKAIRRQKGRIIGKDGKTRQIIENMTGANISVYGKTVALIG 141
>gi|261402309|ref|YP_003246533.1| putative RNA-processing protein [Methanocaldococcus vulcanius M7]
gi|261369302|gb|ACX72051.1| KH domain protein [Methanocaldococcus vulcanius M7]
Length = 216
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 94 VKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ 152
VK A+E +K E+D +G++T++ T K D + KA+D+++ + R E A+R++
Sbjct: 32 VKKAIEEELGVKLEIDE-DGTVTIYGTDKQKDQLAVWKAKDIVRAIGRGFNPEIALRLVS 90
Query: 153 DDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
DD +II I + ++ + + R+IG G + + IE LT + V G+TVA +G H+
Sbjct: 91 DDYVLEIIDIEDYASSENSLRRLKGRVIGKEGKSRRYIEGLTGANVSVYGKTVAIVGEHE 150
>gi|256810935|ref|YP_003128304.1| putative RNA-processing protein [Methanocaldococcus fervens AG86]
gi|256794135|gb|ACV24804.1| KH domain protein [Methanocaldococcus fervens AG86]
Length = 216
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 94 VKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ 152
VK A+E +K E+D +G++T++ T K DP + KA+D+++ + R E A+R++
Sbjct: 32 VKKAIEKELGVKLEIDE-DGTVTIYGTEKQKDPLAVWKAKDIVRAIGRGFNPEIALRLVS 90
Query: 153 DDISCDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
D+ ++I I + N + VKR + R+IG G + + IE LT + V G TVA +G H
Sbjct: 91 DEYVLEVIDIEDYA-NSENAVKRLKGRVIGKEGKSRRYIEELTGANVSVYGNTVAIVGEH 149
Query: 212 K 212
+
Sbjct: 150 E 150
>gi|15668619|ref|NP_247417.1| putative RNA-processing protein [Methanocaldococcus jannaschii DSM
2661]
gi|2495988|sp|Q57885.1|Y443_METJA RecName: Full=KH domain-containing protein MJ0443
gi|1591147|gb|AAB98430.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 227
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 94 VKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ 152
VK +E +K E+D +G++T++ T K DP + KARD+++ + R E A++++
Sbjct: 36 VKKTIEKELGVKLEIDA-DGTVTIYGTDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVS 94
Query: 153 DDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
D+ ++I I + + + + R+IG G + + IE LT + V G TVA +G H+
Sbjct: 95 DEYVLEVIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHE 154
>gi|289193176|ref|YP_003459117.1| KH domain protein [Methanocaldococcus sp. FS406-22]
gi|288939626|gb|ADC70381.1| KH domain protein [Methanocaldococcus sp. FS406-22]
Length = 218
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 94 VKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ 152
VK +E +K E+D +G++T++ T K DP + KA+D+++ + R E A++++
Sbjct: 32 VKKTIEKELGVKLEIDA-DGTVTIYGTDKQKDPLAVWKAKDIVRAIGRGFNPEIALKLVS 90
Query: 153 DDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
D+ ++I I + ++ + + R+IG G + + IE LT + V G TVA +G H+
Sbjct: 91 DEYVLEVIDIEDYASSENSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHE 150
>gi|297618876|ref|YP_003706981.1| KH domain-containing protein [Methanococcus voltae A3]
gi|297377853|gb|ADI36008.1| KH domain protein [Methanococcus voltae A3]
Length = 186
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%)
Query: 117 FTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRR 176
++T K D + KARD++K + R E+A+++L D C+II I +++ ++ +
Sbjct: 50 YSTDKQVDALSLWKARDIVKAIGRGFSPEKALKLLSDSYMCEIIDISEYANSEKALLRLK 109
Query: 177 QRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
R+IG G + + +E LT Y+ V G+TV+ LG
Sbjct: 110 GRIIGSGGKSRRYVEELTGTYISVYGKTVSILG 142
>gi|429327831|gb|AFZ79591.1| ribosomal RNA assembly protein, putative [Babesia equi]
Length = 147
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
S S+ + +E+Y++ W VK +L + IK +L+++EGSM+VFTT++TWDPYIIIK
Sbjct: 45 SFSILFPKYREKYIQSVWGDVKKSLSDYHIKCDLNLVEGSMSVFTTKRTWDPYIIIKDLA 104
Query: 134 MIKLLSRSVPY 144
+L ++ Y
Sbjct: 105 HENILIKTCNY 115
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E+++S+ P+++++ Y++ W VK +L + IK +L+++EGSM+VFTT++TWDPY
Sbjct: 43 ESSFSILFPKYREK-----YIQSVWGDVKKSLSDYHIKCDLNLVEGSMSVFTTKRTWDPY 97
Query: 62 IIIKARDMIKLLSRSVPY 79
IIIK +L ++ Y
Sbjct: 98 IIIKDLAHENILIKTCNY 115
>gi|150400216|ref|YP_001323983.1| putative RNA-processing protein [Methanococcus vannielii SB]
gi|150012919|gb|ABR55371.1| KH type 1 domain protein [Methanococcus vannielii SB]
Length = 184
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
++ E+D EG +T+++T + D + KARD++K + R E+A+++L D+ S + I I
Sbjct: 35 VELEIDS-EGEVTIYSTEEQKDALALWKARDIVKAVGRGFSPEKALKLLSDEHSFETIDI 93
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ + + + R+IG +G + + IE LT ++ V G+TV+ LG
Sbjct: 94 TEYASSDKALQRLKGRIIGSSGKSRRYIEELTGTHVSVYGKTVSILG 140
>gi|336122118|ref|YP_004576893.1| KH domain-containing protein [Methanothermococcus okinawensis IH1]
gi|334856639|gb|AEH07115.1| KH domain protein [Methanothermococcus okinawensis IH1]
Length = 184
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 60/102 (58%)
Query: 111 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQ 170
+G +T+F+T + DP KA+D+I+ + R E+A++++ DD +II I + +
Sbjct: 42 DGEITIFSTEEQKDPLATWKAKDIIRAIGRGFNPEKALKLISDDYILEIIDITDYANSDN 101
Query: 171 RFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
+ + R+IG G + + IE LT+ + V G+T+A LG ++
Sbjct: 102 AIRRLKGRVIGSGGKSRRYIEDLTDTDVSVYGKTIAILGEYE 143
>gi|356532666|ref|XP_003534892.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA assembly protein
KRR1-like [Glycine max]
Length = 269
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 228 SIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKN-IHPIYNIKA 275
++E+LT C++LVQG T+A +G GL QVRRIVE+ M N +HP+YNIK+
Sbjct: 16 ALEILTGCFILVQGNTIAVMGSFIGLKQVRRIVEECMMNKMHPVYNIKS 64
>gi|150403542|ref|YP_001330836.1| putative RNA-processing protein [Methanococcus maripaludis C7]
gi|159904678|ref|YP_001548340.1| putative RNA-processing protein [Methanococcus maripaludis C6]
gi|150034572|gb|ABR66685.1| KH type 1 domain protein [Methanococcus maripaludis C7]
gi|159886171|gb|ABX01108.1| KH type 1 domain protein [Methanococcus maripaludis C6]
Length = 184
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
++ E+D EG +++++T DP + KARD++K + R E+A++++ D+ + ++I I
Sbjct: 35 VELEIDS-EGEVSIYSTEDQEDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEVIDI 93
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ + + + R+IG G + + IE LT+ ++ V G+TV+ +G
Sbjct: 94 SEYGNSDKALQRLKGRIIGSGGKSRRYIEELTSTHISVYGKTVSIIG 140
>gi|134046036|ref|YP_001097522.1| putative RNA-processing protein [Methanococcus maripaludis C5]
gi|132663661|gb|ABO35307.1| KH, type 1, domain protein [Methanococcus maripaludis C5]
Length = 184
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 94 VKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ 152
V+ LE ++ E+D EG + +++T DP + KARD++K + R E+A++++
Sbjct: 25 VRKTLESELGVELEIDS-EGEVNIYSTEGQEDPLALWKARDIVKAIGRGFNPEKALKLVS 83
Query: 153 DDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
D+ + ++I I + + + + R+IG +G + + IE LT+ ++ V G+TV+ +G
Sbjct: 84 DEYAFEVIDISEYGNSDKALQRLKGRIIGSSGKSRRYIEELTSTHISVYGKTVSIIG 140
>gi|374636257|ref|ZP_09707834.1| KH domain protein [Methanotorris formicicus Mc-S-70]
gi|373559594|gb|EHP85885.1| KH domain protein [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 106 ELDVIE-GSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGN 164
EL++ E G +T+++T K D KARD+++ + R E A+++L D+ +II I
Sbjct: 45 ELEISEDGDVTIYSTEKQKDALATWKARDIVRAIGRGFSPENALKLLSDEYVLEIIDITE 104
Query: 165 LVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGP 210
++ + + R+IG G + K IE LT + V G+TVA LG
Sbjct: 105 YASSENALRRLKGRVIGSGGKSRKYIEDLTGARVSVFGKTVAILGE 150
>gi|397617920|gb|EJK64671.1| hypothetical protein THAOC_14573, partial [Thalassiosira oceanica]
Length = 126
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKAR 132
+E+YL+E WPLV L+ + I EL+++EGSMTV TT KT DPYII+KAR
Sbjct: 77 REKYLREVWPLVTRTLDKYKIACELNLVEGSMTVRTTLKTSDPYIILKAR 126
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 5/66 (7%)
Query: 2 ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
E++++ P+++++ YL+E WPLV L+ + I EL+++EGSMTV TT KT DPY
Sbjct: 66 ESSFATLFPKYREK-----YLREVWPLVTRTLDKYKIACELNLVEGSMTVRTTLKTSDPY 120
Query: 62 IIIKAR 67
II+KAR
Sbjct: 121 IILKAR 126
>gi|45358168|ref|NP_987725.1| RNA-processing protein [Methanococcus maripaludis S2]
gi|340623859|ref|YP_004742312.1| putative RNA-processing protein [Methanococcus maripaludis X1]
gi|44920925|emb|CAF30161.1| Conserved Hypothetical protein [Methanococcus maripaludis S2]
gi|339904127|gb|AEK19569.1| putative RNA-processing protein [Methanococcus maripaludis X1]
Length = 184
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
++ E+D EG + +++T + DP + KARD++K + R E+A++++ D+ + ++I I
Sbjct: 35 VELEIDS-EGEVNIYSTDEQKDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEVIDI 93
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ + + + R+IG +G + + +E LT+ ++ V G+TV+ +G
Sbjct: 94 SEYGNSDKAIQRLKGRIIGSSGKSRRYVEELTSTHISVYGKTVSIIG 140
>gi|304315141|ref|YP_003850288.1| RNA-binding protein [Methanothermobacter marburgensis str. Marburg]
gi|302588600|gb|ADL58975.1| predicted RNA-binding protein [Methanothermobacter marburgensis
str. Marburg]
Length = 188
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
E+D G++T+ + DP KAR++++ + R E A+R+L DD++ DIIKI +
Sbjct: 37 EIDSETGAVTLIPHDELDDPLSPWKARNIVRAIGRGFNPEVALRLLDDDVALDIIKITDY 96
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
V ++K+ +++ R+IG G T + I +T + V G+TVA +G
Sbjct: 97 VGKSKKAIARQKGRVIGRGGITRRIIHDMTGVDISVYGKTVALIG 141
>gi|432108524|gb|ELK33238.1| Calcyphosin-2 [Myotis davidii]
Length = 666
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 35/39 (89%)
Query: 38 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRS 76
+ A LD+IEGSMTV TT+KT+DPYIII+ RD+IKLL+R+
Sbjct: 30 VNATLDLIEGSMTVCTTKKTFDPYIIIRIRDLIKLLART 68
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 35/39 (89%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRS 141
+ A LD+IEGSMTV TT+KT+DPYIII+ RD+IKLL+R+
Sbjct: 30 VNATLDLIEGSMTVCTTKKTFDPYIIIRIRDLIKLLART 68
>gi|448320958|ref|ZP_21510441.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
gi|445604851|gb|ELY58792.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
Length = 185
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ V T DP +K ++++ + R P E+A+++L+DD+ DI+
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQLDIVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG +G T + +E L+ +++ G T+ A+G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIG 135
>gi|333911635|ref|YP_004485368.1| KH domain-containing protein [Methanotorris igneus Kol 5]
gi|333752224|gb|AEF97303.1| KH domain protein [Methanotorris igneus Kol 5]
Length = 194
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 111 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQ 170
+G +T+++T K D KARD++ + R E A+++L D+ +II I ++
Sbjct: 51 DGDVTIYSTEKQKDALATWKARDIVMAIGRGFSPENALKLLSDEYVLEIIDITEYASSEN 110
Query: 171 RFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ + R+IG G + K IE LT + V G+TVA LG
Sbjct: 111 ALRRLKGRVIGSGGKSRKYIEDLTGARVSVFGKTVAILG 149
>gi|448304025|ref|ZP_21493970.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445592112|gb|ELY46304.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 185
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +KA D+++ + R P E A+++L+D++ D++
Sbjct: 31 VRLDIDSENGSVAVDTV---GDPVLGLKAPDIVRAIGRGFPPEAALQLLEDEMMMFDLVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 INAAARNKNDLKRKKGRLIGEGGRTRELMEELTGAEVVIYGSTLGTIG 135
>gi|448337651|ref|ZP_21526726.1| RNA-processing protein [Natrinema pallidum DSM 3751]
gi|445625228|gb|ELY78594.1| RNA-processing protein [Natrinema pallidum DSM 3751]
Length = 185
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ A+G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGAIG 135
>gi|296109403|ref|YP_003616352.1| KH domain protein [methanocaldococcus infernus ME]
gi|295434217|gb|ADG13388.1| KH domain protein [Methanocaldococcus infernus ME]
Length = 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
+K ++D +G++T+++ + DP + KA+D++K ++R E A+R+L DD +II I
Sbjct: 42 VKIKIDA-DGTVTIYS-KNNEDPLALWKAKDIVKAIARGFNPEIALRLLSDDYVLEIINI 99
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ +++ + + R+IG G + + IE LT + V G+TV+ +G
Sbjct: 100 EDYAKSENSLRRLKGRVIGKEGKSRRYIEELTGASVSVYGKTVSIVG 146
>gi|448315617|ref|ZP_21505258.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
gi|445610989|gb|ELY64752.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
Length = 185
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ V T DP +K ++++ + R P E+A+++L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG +G T + +E L+ +++ G T+ A+G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIG 135
>gi|47187716|emb|CAF94757.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 276 LMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE 319
LMIKRELAKDP+L++++WERFLP F+ K L+KR+ PKK+ E
Sbjct: 3 LMIKRELAKDPELRSQSWERFLPKFRHKNLAKRREPKKKAVDQE 46
>gi|448704680|ref|ZP_21700681.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
gi|445796078|gb|EMA46591.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
Length = 185
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R P E+A+R+L D++ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFPPEEALRLLDDEMMMFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG +G T + +E LT +++ G T+ +G
Sbjct: 88 IDAAARNKNDLQRQKGRLIGEDGRTRELMEELTGASVVIYGSTLGIIG 135
>gi|408381805|ref|ZP_11179353.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
gi|407815736|gb|EKF86306.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
Length = 191
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
E+D GS+ + DP + KAR M+K + R E A++++ DD+ +II + +
Sbjct: 37 EVDSEAGSIAISPQEDAKDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLPDY 96
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
V ++K+ ++++ R+IG +G T I +T Y+ + G+TV+ +G
Sbjct: 97 VGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYVSIYGKTVSIIG 141
>gi|289581759|ref|YP_003480225.1| KH domain-containing protein [Natrialba magadii ATCC 43099]
gi|448282835|ref|ZP_21474117.1| RNA-processing protein [Natrialba magadii ATCC 43099]
gi|289531312|gb|ADD05663.1| KH domain protein [Natrialba magadii ATCC 43099]
gi|445575450|gb|ELY29925.1| RNA-processing protein [Natrialba magadii ATCC 43099]
Length = 192
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + T DP + +K ++++ + R P E A+R+L+DD+ DI+
Sbjct: 31 VRLDIDSENGSVAIETV---GDPVLGLKGPEIVRAIGRGFPPEDALRLLEDDMMMFDIVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIG 135
>gi|448401055|ref|ZP_21571461.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
gi|445666868|gb|ELZ19524.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
Length = 185
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K D+++ + R E A+R+L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPDIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|15679024|ref|NP_276141.1| RNA-processing protein [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2622107|gb|AAB85502.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 191
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
E+D G++T+ + DP KAR +++ + R E A+R+L DD++ ++IKI +
Sbjct: 40 EIDSETGAVTLIPQDELEDPLSPWKARHIVRAIGRGFNPEVALRLLDDDVALEVIKITDY 99
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
V ++K+ +++ R+IG G T + I +T + V G+TV+ +G + L
Sbjct: 100 VGKSKKAIARQKGRVIGREGITRRIIHDMTGVDISVYGKTVSLIGEFEKL 149
>gi|389852869|ref|YP_006355103.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
gi|388250175|gb|AFK23028.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
Length = 221
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K E+D G + + +TR+T DP + KARD++ + R E+A R+L + +I+ +
Sbjct: 68 KIEVDSETGEVWITSTRETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIVNLT 127
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ K+ + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 128 DIIIGDEKKALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIG 175
>gi|410720327|ref|ZP_11359683.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
gi|410601109|gb|EKQ55629.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
Length = 191
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
++D GS+ + DP + KAR M+K + R E A++++ DD+ +II + +
Sbjct: 37 DVDSEAGSIAISPQEDAEDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLPDY 96
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
V ++K+ ++++ R+IG +G T I +T Y+ + G+TV+ +G
Sbjct: 97 VGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYVSIYGKTVSIIG 141
>gi|435849099|ref|YP_007311349.1| KH domain protein [Natronococcus occultus SP4]
gi|433675367|gb|AGB39559.1| KH domain protein [Natronococcus occultus SP4]
Length = 185
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ V DP +K ++++ + R P E+A+++L DD+ D++
Sbjct: 31 VRLDIDSENGSVAV---ESVGDPVSGLKGPEIVRAIGRGFPPEEALQLLDDDMMQFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG +G T + +E L+ +++ G T+ A+G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIG 135
>gi|448354706|ref|ZP_21543461.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
gi|445637037|gb|ELY90193.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
Length = 194
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + T DP + +K ++++ + R P E A+R+L DD+ D++
Sbjct: 31 VRLDIDSENGSVAIETV---GDPVLGLKGPEIVRAIGRGFPPEDALRLLDDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIG 135
>gi|448298866|ref|ZP_21488885.1| RNA-processing protein [Natronorubrum tibetense GA33]
gi|445589581|gb|ELY43810.1| RNA-processing protein [Natronorubrum tibetense GA33]
Length = 185
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDD-ISCDIIK 161
++ ++D GS+ V T DP + +KA D+++ + R E A+R+L+DD I D++
Sbjct: 31 VRLDIDSENGSVAVDTV---GDPVLGLKAPDIVRAIGRGFAPETALRLLEDDMIMFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +N +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEGGRTRELMEELSGANVVIYGSTLGIIG 135
>gi|397771874|ref|YP_006539420.1| KH domain protein [Natrinema sp. J7-2]
gi|397680967|gb|AFO55344.1| KH domain protein [Natrinema sp. J7-2]
Length = 182
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L+DD+ D++
Sbjct: 28 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 84
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 85 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIG 132
>gi|432329120|ref|YP_007247264.1| universal archaeal KH domain protein [Aciduliprofundum sp.
MAR08-339]
gi|432135829|gb|AGB05098.1| universal archaeal KH domain protein [Aciduliprofundum sp.
MAR08-339]
Length = 182
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
+K E+D EG + + + DP + +K RD + + R E+A R+ +D+ ++I I
Sbjct: 31 VKMEIDSREGDVVI--DESSGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVIDI 88
Query: 163 GNLVQNKQRFVK-RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
++ ++ R R+IG NG T + IE L+ + + G +VA +G +
Sbjct: 89 KEFAGKRESRIRVLRGRIIGKNGKTRRIIEELSGASLSIYGYSVAIIGSY 138
>gi|448342159|ref|ZP_21531111.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|448346687|ref|ZP_21535569.1| RNA-processing protein [Natrinema altunense JCM 12890]
gi|445626150|gb|ELY79499.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|445631949|gb|ELY85172.1| RNA-processing protein [Natrinema altunense JCM 12890]
Length = 185
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|433589530|ref|YP_007279026.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|448335674|ref|ZP_21524813.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
gi|433304310|gb|AGB30122.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|445616197|gb|ELY69826.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
Length = 185
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIG 135
>gi|448381536|ref|ZP_21561656.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
gi|445663023|gb|ELZ15783.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
Length = 185
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIG 135
>gi|397781781|ref|YP_006546254.1| KH domain-containing protein [Methanoculleus bourgensis MS2]
gi|396940283|emb|CCJ37538.1| KH domain-containing protein [Methanoculleus bourgensis MS2]
Length = 208
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIK 161
I ++D EG++ + + DP ++ A +++ ++R E+A R+L+D D+ +II
Sbjct: 61 ISLQIDSEEGTVMI----EGDDPIAVMTATSVVQAINRGFSPERAFRLLEDEDMMLEIIN 116
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ +L + + R R+IG G + IE +TN + V G+TVA +G
Sbjct: 117 LADLTDTARHLERLRGRIIGKAGTSRAQIEDMTNTEISVHGKTVAIIG 164
>gi|18977952|ref|NP_579309.1| RNA-processing protein [Pyrococcus furiosus DSM 3638]
gi|397652073|ref|YP_006492654.1| RNA-processing protein [Pyrococcus furiosus COM1]
gi|18893724|gb|AAL81704.1| hypothetical protein PF1580 [Pyrococcus furiosus DSM 3638]
gi|393189664|gb|AFN04362.1| RNA-processing protein [Pyrococcus furiosus COM1]
Length = 221
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K E+D G + + +T++T DP + KARD++ + R E+A R+L + +II +
Sbjct: 68 KIEVDSETGEVWITSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLT 127
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 128 DIIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASISVYGKTVAIIG 175
>gi|284166911|ref|YP_003405190.1| KH domain-containing protein [Haloterrigena turkmenica DSM 5511]
gi|284016566|gb|ADB62517.1| KH domain protein [Haloterrigena turkmenica DSM 5511]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAVGRGFAPEAALRLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|315230264|ref|YP_004070700.1| RNA-binding protein [Thermococcus barophilus MP]
gi|315183292|gb|ADT83477.1| RNA-binding protein [Thermococcus barophilus MP]
Length = 222
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 99 ELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCD 158
E+ K E+D G + + +T KT DP + KARD++ + R E+A R+ + +
Sbjct: 64 EITKTKIEVDSETGEVFISSTEKTDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEVLE 123
Query: 159 IIKIGNLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
II + +++ K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 124 IINLSDIIIGNEKNALPRIRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIG 176
>gi|351700923|gb|EHB03842.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 179
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 38 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRS 76
+ A L +IEGSMTV TT+KT DPYIII+ARD+IKLL S
Sbjct: 15 LNATLGLIEGSMTVCTTKKTSDPYIIIRARDLIKLLPES 53
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRS 141
+ A L +IEGSMTV TT+KT DPYIII+ARD+IKLL S
Sbjct: 15 LNATLGLIEGSMTVCTTKKTSDPYIIIRARDLIKLLPES 53
>gi|448356505|ref|ZP_21545238.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
gi|445653538|gb|ELZ06409.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
Length = 185
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + T DP + +K ++++ + R P E A+++L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAIETV---GDPVLGLKGPEIVRAIGRGFPPEDALQLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIG 135
>gi|150401024|ref|YP_001324790.1| RNA-processing protein [Methanococcus aeolicus Nankai-3]
gi|150013727|gb|ABR56178.1| KH type 1 domain protein [Methanococcus aeolicus Nankai-3]
Length = 186
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 94 VKNALELHFIKAELDVIE-GSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ 152
+KN +E +K E+D+ E G +T+F+T++ DP KARD+IK + R E++++++
Sbjct: 27 IKNRIEKE-LKVEIDIEEDGEITIFSTKEQEDPLATWKARDIIKAIGRGFNPEKSLKLIS 85
Query: 153 DDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
DD +II I + + + R+IG G + + IE LT+ + V G+T+A LG ++
Sbjct: 86 DDYIIEIIDITEHASSDNAVKRLKGRVIGSGGKSRRYIEELTDTDVSVYGKTIAVLGDYE 145
Query: 213 GL 214
+
Sbjct: 146 SV 147
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 29 VKNALELHFIKAELDVIE-GSMTVFTTRKTWDPYIIIKARDMIKLLSRSV-PYEPLK 83
+KN +E +K E+D+ E G +T+F+T++ DP KARD+IK + R P + LK
Sbjct: 27 IKNRIEKE-LKVEIDIEEDGEITIFSTKEQEDPLATWKARDIIKAIGRGFNPEKSLK 82
>gi|448406892|ref|ZP_21573324.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
gi|445676698|gb|ELZ29215.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
Length = 182
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIKIGNLVQNKQRFVKRRQRL 179
+T DP +K D++K + R E+A+R+L D++ DII I +N+ + + RL
Sbjct: 46 QTGDPLTALKGPDIVKAIGRGFAPEEAMRLLDDEMMMFDIIDIDAAARNRNDLQRHKGRL 105
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
IG +G T + +E L+ +++ G T+ +G
Sbjct: 106 IGEDGRTRELMEELSGASVVIYGSTLGIIG 135
>gi|375084290|ref|ZP_09731296.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
gi|374741050|gb|EHR77482.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
Length = 220
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K E+D G + + +T KT DP + KARD++ + R E+A R+L + +++ +
Sbjct: 67 KIEVDSQTGEVFITSTEKTDDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVDLT 126
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
++V K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 127 DVVVGNEKNALPRVRGRIIGRKGRTREIIEEMSGTDISVYGKTVAIIG 174
>gi|337283842|ref|YP_004623316.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
gi|334899776|gb|AEH24044.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
Length = 220
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
+ E+D G + + +T++T DP + KARD++ + R E+A R+L + +II +
Sbjct: 67 RIEVDSETGEVWITSTKETNDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLT 126
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 127 DMIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASVSVYGKTVAIIG 174
>gi|84490126|ref|YP_448358.1| RNA-processing protein [Methanosphaera stadtmanae DSM 3091]
gi|84373445|gb|ABC57715.1| predicted RNA-binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 233
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 94 VKNALELHFIKAEL--DVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVL 151
+K+ LE+ K EL D G++ + +T +T DP I KAR MIK + R + A+ +
Sbjct: 24 IKHQLEI-ITKTELKIDSDTGNIAISSTDETDDPLAIWKARYMIKAIGRGFNPDIALTLE 82
Query: 152 QDDISCDIIKIGNLV-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
DD+ +II + + V ++K+ V+++ R+IG NG T + + + + + + G+TV+ +G
Sbjct: 83 NDDLILEIINLQDYVGKSKKALVRQKGRIIGKNGRTRQIMHDMLDVEISIYGKTVSLIG 141
>gi|242399085|ref|YP_002994509.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
gi|242265478|gb|ACS90160.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
Length = 220
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K ++D G + + +T +T DP + KARD++ + R E+A R+L + +++++
Sbjct: 67 KIDIDSNTGEVFITSTEETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVELT 126
Query: 164 NLVQNKQRFV--KRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ +R + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 127 DIIIGNERNALPRVRGRIIGRKGRTREIIEEMSGTEISVYGKTVAIIG 174
>gi|14520809|ref|NP_126284.1| RNA-processing protein [Pyrococcus abyssi GE5]
gi|5458025|emb|CAB49515.1| Predicted RNA-binding protein [Pyrococcus abyssi GE5]
gi|380741351|tpe|CCE69985.1| TPA: putative RNA-processing protein [Pyrococcus abyssi GE5]
Length = 221
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K +D G + + +T++T DP + KARD+++ + R E+A R+L + +II +
Sbjct: 68 KITVDSETGEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEYLEIINLT 127
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 128 DIIIGNEKNALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIG 175
>gi|254167589|ref|ZP_04874440.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197623398|gb|EDY35962.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 181
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 95 KNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDD 154
K E+ +K +++ +G + + + DP + +K RD + + R E+A R+ +D
Sbjct: 22 KKVEEISGVKMDINSNDGDVVI--DESSGDPLMALKVRDFVMAVGRGFSPERAWRIFNED 79
Query: 155 ISCDIIKIGNLVQNKQRFVK-RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
+ ++I I ++ ++ R R+IG NG T + IE ++ + V G TVA +G +
Sbjct: 80 VYFEVIDIKEFTGKRENRIRVLRGRIIGKNGKTRRIIEEMSGASISVYGYTVAIIGDY 137
>gi|14591347|ref|NP_143425.1| RNA-processing protein [Pyrococcus horikoshii OT3]
gi|159794750|pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
gi|294979443|pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
gi|3257995|dbj|BAA30678.1| 219aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 219
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K +D G + + +T++T DP + KARD++ + R E+A R+L + +II +
Sbjct: 66 KITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLT 125
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 126 DIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIG 173
>gi|289596955|ref|YP_003483651.1| KH domain protein [Aciduliprofundum boonei T469]
gi|289534742|gb|ADD09089.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 182
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 95 KNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDD 154
K E+ +K +++ +G + + + DP + +K RD + + R E+A R+ +D
Sbjct: 23 KKVEEISGVKMDINSNDGDVVI--DESSGDPLMALKVRDFVMAVGRGFSPERAWRIFNED 80
Query: 155 ISCDIIKIGNLVQNKQRFVK-RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
+ ++I I ++ ++ R R+IG NG T + IE ++ + V G TVA +G +
Sbjct: 81 VYFEVIDIKEFTGKRENRIRVLRGRIIGKNGKTRRIIEEMSGASISVYGYTVAIIGDY 138
>gi|399576154|ref|ZP_10769911.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
gi|399238865|gb|EJN59792.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
Length = 206
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + A D+++ + R E A+ +L +D+ D+I
Sbjct: 54 VRLDIDSESGSVAIDSV---GDPVTGLAAPDIVRAIGRGFKPEVALSLLDNDMRMFDLID 110
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
IG +NK +++ RLIG NG T + +E L+ ++++ G T+ +G
Sbjct: 111 IGEATRNKNDMKRQKGRLIGENGRTRQLMEELSGAHVVIYGSTLGIIG 158
>gi|57640735|ref|YP_183213.1| putative RNA-processing protein [Thermococcus kodakarensis KOD1]
gi|57159059|dbj|BAD84989.1| RNA-binding protein, containing KH domain [Thermococcus
kodakarensis KOD1]
Length = 238
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K E+D G + + T +T DP + KARD++ + R E+A R+ + + +++ +
Sbjct: 69 KIEVDSETGEVFITATEETDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGETLEVVNLT 128
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
++V K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 129 DIVVGNEKNALPRVRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIG 176
>gi|448330229|ref|ZP_21519514.1| RNA-processing protein [Natrinema versiforme JCM 10478]
gi|445612134|gb|ELY65869.1| RNA-processing protein [Natrinema versiforme JCM 10478]
Length = 185
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L++D+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEDALRLLENDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAASRNKTDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIG 135
>gi|15791048|ref|NP_280872.1| RNA-processing protein [Halobacterium sp. NRC-1]
gi|169236798|ref|YP_001689998.1| RNA-processing protein [Halobacterium salinarum R1]
gi|10581643|gb|AAG20352.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727864|emb|CAP14652.1| KH domain protein [Halobacterium salinarum R1]
Length = 183
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 105 AELDV-IEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIKI 162
AE+D+ ++ +T DP ++A ++++ + R ++A+ +L DD+ D I I
Sbjct: 29 AEVDIDVDSQDGAVAIERTGDPVRGMQAPEIVQAIGRGFKPDEALTLLDDDMRMFDTIDI 88
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
G +N +++ RLIG NG T + +E LT +++ G T +G
Sbjct: 89 GRAARNDNDLRRKKGRLIGENGRTRELMEELTGASVVIYGSTFGVIG 135
>gi|332157797|ref|YP_004423076.1| putative RNA-processing protein [Pyrococcus sp. NA2]
gi|331033260|gb|AEC51072.1| putative RNA-processing protein [Pyrococcus sp. NA2]
Length = 220
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 107 LDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLV 166
+D G + + +T++T DP + KARD++ + R E+A R+L + +II + +++
Sbjct: 70 VDSETGEVWITSTKETKDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDII 129
Query: 167 --QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 130 IGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIG 174
>gi|76801154|ref|YP_326162.1| RNA-processing protein [Natronomonas pharaonis DSM 2160]
gi|76557019|emb|CAI48594.1| KH domain protein [Natronomonas pharaonis DSM 2160]
Length = 187
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V DP + +K D++K + R E+A+R+L+DD+ +I+
Sbjct: 31 VRLDIDSETGSVRV---ESVGDPILGLKGPDIVKAIGRGFAPEEALRLLEDDMQLFEIVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK+ +++ RLIG +G T + + L+ +++ G T+ +G
Sbjct: 88 IDAATRNKKDLRRKKGRLIGESGRTRELMAELSGADVVIYGSTLGIIG 135
>gi|20093951|ref|NP_613798.1| RNA-processing protein [Methanopyrus kandleri AV19]
gi|19886904|gb|AAM01728.1| Predicted RNA-binding protein containing KH domain) [Methanopyrus
kandleri AV19]
Length = 202
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVL-QDDISCDIIK 161
++ +D G + + T + DP +IKA++ + + R E+A R+L ++D S ++I
Sbjct: 42 VELRIDSKTGEVEIRPTERVKDPLDLIKAKECVLAIGRGFSPERAFRLLREEDASLEVID 101
Query: 162 IGNLV-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ LV +N + ++R R+IG G T + IE L+ + ++G+TVA +G
Sbjct: 102 LYELVGRNPKALERQRARIIGREGRTRQLIEELSGADVSIRGKTVALIG 150
>gi|448307133|ref|ZP_21497034.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
gi|445596680|gb|ELY50765.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
Length = 185
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP +KA D+++ + R E A+R+L+D++ D++
Sbjct: 31 VRLDIDSENGSVAIDSV---GDPVRGLKAPDIVRAIGRGFAPEAALRLLEDEMMMFDLVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGTIG 135
>gi|448312672|ref|ZP_21502412.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
gi|445600868|gb|ELY54868.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
Length = 185
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP +KA D+++ + R + A+R+L+D++ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVSGLKAPDIVRAIGRGFAPDAALRLLEDEMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +N +++ RLIG +G T + +E LT +++ G T+ +G
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEDGRTRELMEELTGADVVIYGSTLGVIG 135
>gi|448483379|ref|ZP_21605753.1| RNA-processing protein [Halorubrum arcis JCM 13916]
gi|448514185|ref|ZP_21616937.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|448526135|ref|ZP_21619753.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445692853|gb|ELZ45022.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|445699335|gb|ELZ51366.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445820751|gb|EMA70555.1| RNA-processing protein [Halorubrum arcis JCM 13916]
Length = 180
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+++ + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVSI---EERDDPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + IE L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|433637168|ref|YP_007282928.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|448376349|ref|ZP_21559558.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
gi|433288972|gb|AGB14795.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|445657274|gb|ELZ10103.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
Length = 189
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K D+++ + R E A+ +L D++ DI+
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPDIVRAIGRGFAPEDALALLDDELMMFDIVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +N +++ RLIG NG T + +E L+ +++ G T+A +G
Sbjct: 88 IDTASRNANDMKRQKGRLIGENGRTRELMEELSGASVVIYGSTLAIIG 135
>gi|448427291|ref|ZP_21583644.1| RNA-processing protein [Halorubrum terrestre JCM 10247]
gi|445678742|gb|ELZ31227.1| RNA-processing protein [Halorubrum terrestre JCM 10247]
Length = 180
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+++ + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVSI---EERDDPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + IE L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|448366616|ref|ZP_21554739.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
gi|445654071|gb|ELZ06927.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
Length = 186
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D +G++ V T DP +KA ++++ + R E+A+++L+DD+ D++
Sbjct: 31 VRLDIDSEDGAVAVETV---GDPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIG 135
>gi|448350955|ref|ZP_21539765.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
gi|445635143|gb|ELY88314.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
Length = 186
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D +G++ V T DP +KA ++++ + R E+A+++L+DD+ D++
Sbjct: 31 VRLDIDSEDGAVAVETV---GDPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMVLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIG 135
>gi|212223914|ref|YP_002307150.1| putative RNA-processing protein [Thermococcus onnurineus NA1]
gi|212008871|gb|ACJ16253.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 234
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
+ E+D G + + T+ T DP + KARD++ + R E+A R+ + ++I +
Sbjct: 69 RIEVDSETGEVFITATKDTDDPLAVWKARDVVTAIGRGFSPERAFRLFNEGEVLEVINLT 128
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ +K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 129 DIIIGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIG 176
>gi|383620249|ref|ZP_09946655.1| putative RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|448695968|ref|ZP_21697622.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|445784079|gb|EMA34899.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
Length = 185
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E+A+R+L++++ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEEALRLLENEMMMFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK + + RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAAARNKNDLQRHKGRLIGEGGRTRELMEELTGASVVIYGSTLGIIG 135
>gi|448451612|ref|ZP_21592912.1| RNA-processing protein [Halorubrum litoreum JCM 13561]
gi|445810468|gb|EMA60493.1| RNA-processing protein [Halorubrum litoreum JCM 13561]
Length = 180
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+++ + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVSI---EERDDPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + IE L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELIEDLSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|336253009|ref|YP_004596116.1| KH domain-containing protein [Halopiger xanaduensis SH-6]
gi|335336998|gb|AEH36237.1| KH domain protein [Halopiger xanaduensis SH-6]
Length = 185
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP + +K ++++ + R E A+R+L+D++ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVLGLKGPEIVRAIGRGFAPEDALRLLEDEMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEEGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|222481065|ref|YP_002567302.1| RNA-processing protein [Halorubrum lacusprofundi ATCC 49239]
gi|222453967|gb|ACM58232.1| KH type 1 domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 180
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ + + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVAI---EELDDPVAALVAPDIIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + IE L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|358346239|ref|XP_003637177.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355503112|gb|AES84315.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 90
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKT 122
+E+YL+E WPLVK++L+ I AEL+++EGSMTV TTRKT
Sbjct: 37 REKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKT 76
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 20 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKT 57
+YL+E WPLVK++L+ I AEL+++EGSMTV TTRKT
Sbjct: 39 KYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKT 76
>gi|448457874|ref|ZP_21595879.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
gi|445810175|gb|EMA60206.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
Length = 180
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ + + DP ++ A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVAI---EERDDPVAVMVAPDVIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + +E L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRQKGRIIGENGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|409731003|ref|ZP_11272554.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|448722025|ref|ZP_21704566.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|445790428|gb|EMA41090.1| RNA-processing protein [Halococcus hamelinensis 100A6]
Length = 182
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIKIGN 164
++D GS+ V T DP +K D++K + R ++A+ +L DD+ + ++ + +
Sbjct: 34 DIDSETGSVGVETV---GDPVQGLKGPDIVKAIGRGFAPDEALTLLDDDVMTLQVVDVES 90
Query: 165 LVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+NK +++ RLIG NG T + +E L+ +++ G TV +G
Sbjct: 91 ATRNKNDLTRQKGRLIGENGRTRQLMEELSGASVVIYGTTVGIIG 135
>gi|390962070|ref|YP_006425904.1| hypothetical protein containing KH domain [Thermococcus sp. CL1]
gi|390520378|gb|AFL96110.1| hypothetical protein containing KH domain [Thermococcus sp. CL1]
Length = 238
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
+ E+D G + + T+ T DP + KARD++ + R E+A R+ + ++I +
Sbjct: 69 RIEVDSETGEVFITATKDTDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEMLEVINLT 128
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ +K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 129 DIIVGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIG 176
>gi|341581300|ref|YP_004761792.1| putative RNA-processing protein [Thermococcus sp. 4557]
gi|340808958|gb|AEK72115.1| putative RNA-processing protein [Thermococcus sp. 4557]
Length = 248
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
+ E+D G + + +T +T DP + KARD++ + R E+A R+ + +++ +
Sbjct: 69 RIEVDSETGEVFITSTEETSDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEVLEVVNLT 128
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+++ +K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 129 DVIVGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIG 176
>gi|448389236|ref|ZP_21565648.1| RNA-processing protein [Haloterrigena salina JCM 13891]
gi|445669140|gb|ELZ21755.1| RNA-processing protein [Haloterrigena salina JCM 13891]
Length = 185
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V T DP +K ++++ + R + A+R+L+DD+ D++
Sbjct: 31 VRLDIDSENGSVAVETV---GDPVRGLKGPEIVRAVGRGFAPDAALRLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|257386765|ref|YP_003176538.1| KH type 1 domain-containing protein [Halomicrobium mukohataei DSM
12286]
gi|257169072|gb|ACV46831.1| KH type 1 domain protein [Halomicrobium mukohataei DSM 12286]
Length = 182
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V DP +K D++K + R E A+ +L D++ D++
Sbjct: 31 VRLDIDSESGSVGV---ESVGDPITGLKGPDIVKAIGRGFNPEDALALLDDEMMMFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +N+ F +++ RLIG G T + +E LT +++ G T+ +G
Sbjct: 88 IDAASRNQNDFTRQKGRLIGEGGRTRELMEELTGASVVIYGSTLGIIG 135
>gi|300710112|ref|YP_003735926.1| KH domain-containing protein [Halalkalicoccus jeotgali B3]
gi|448297116|ref|ZP_21487164.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
gi|299123795|gb|ADJ14134.1| KH domain protein [Halalkalicoccus jeotgali B3]
gi|445580298|gb|ELY34684.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
Length = 187
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D G++ V T DP +K ++++ + R E A+ +L+DD+ D+I
Sbjct: 31 VRLDVDSENGAVQVETV---GDPVTGLKGPEIVRAIGRGFAPEDAMELLEDDVMLFDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK+ +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAAARNKKDLQRKKGRLIGEGGRTRQIMEELSGANVVIYGSTMGVIG 135
>gi|354609668|ref|ZP_09027624.1| KH domain protein [Halobacterium sp. DL1]
gi|353194488|gb|EHB59990.1| KH domain protein [Halobacterium sp. DL1]
Length = 183
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D +GS+ + + DP +KA ++++ + R ++A+ +L D++ D I
Sbjct: 31 VELDVDSQDGSVAI---ERVGDPVRGMKAPEIVRAIGRGFKPDEALSLLDDEMRMFDTID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
IG +N +++ RLIG NG T + +E LT +++ G T +G
Sbjct: 88 IGRAARNDNDLRRKKGRLIGENGRTRELMEELTGANVVIYGSTFGVIG 135
>gi|448503885|ref|ZP_21613514.1| RNA-processing protein [Halorubrum coriense DSM 10284]
gi|445692086|gb|ELZ44269.1| RNA-processing protein [Halorubrum coriense DSM 10284]
Length = 180
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ + + DP + A D+IK + R E A+ +L D+ + D++
Sbjct: 31 VRLDIDSESGSVAI---EERDDPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + IE L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|409095998|ref|ZP_11216022.1| RNA-processing protein [Thermococcus zilligii AN1]
Length = 236
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
+ ++D G + + T KT DP + KARD++ + R E+A R+ + + ++I +
Sbjct: 67 RIDVDSETGEVFITATEKTDDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEVIDLT 126
Query: 164 N-LVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ ++ N++ + R R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 127 DVIIGNEKNALPRIRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIG 174
>gi|448536208|ref|ZP_21622453.1| RNA-processing protein [Halorubrum hochstenium ATCC 700873]
gi|445702651|gb|ELZ54595.1| RNA-processing protein [Halorubrum hochstenium ATCC 700873]
Length = 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+++ + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVSI---EERDDPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + +E L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELMEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|147921591|ref|YP_684592.1| putative RNA-processing protein [Methanocella arvoryzae MRE50]
gi|56295562|emb|CAH04804.1| RNA-binding protein [uncultured archaeon]
gi|110619988|emb|CAJ35266.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 181
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 105 AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIG 163
A++ V S TV K DP+ +KA D IK ++R E+A+++L +D+ D++ +
Sbjct: 32 AQISVDSESGTVVIDSKEGDPFKALKASDAIKAIARGFSPEKALKLLDSEDLILDMMDLS 91
Query: 164 NLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ + + R+IG G T + IE +T + V G+T++ +G
Sbjct: 92 KITDTPSDLTRIKGRIIGRGGKTREIIESMTGAKISVYGKTISIIG 137
>gi|448363887|ref|ZP_21552482.1| RNA-processing protein [Natrialba asiatica DSM 12278]
gi|445645471|gb|ELY98475.1| RNA-processing protein [Natrialba asiatica DSM 12278]
Length = 186
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D +G++ V T DP +K ++++ + R E+A+++L+DD+ D++
Sbjct: 31 VRLDIDSEDGAVAVETV---GDPVRGLKGPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG G T + +E L+ +++ G T+ +G
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIG 135
>gi|448441692|ref|ZP_21589299.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|448462610|ref|ZP_21597809.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
gi|445688728|gb|ELZ40979.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|445818174|gb|EMA68037.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
Length = 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ + + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVAI---EERDDPVAALVAPDIIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + +E L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|448494891|ref|ZP_21609706.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
gi|445689114|gb|ELZ41360.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
Length = 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ + + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVAI---EERDDPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + +E L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|284161872|ref|YP_003400495.1| KH type 1 domain-containing protein [Archaeoglobus profundus DSM
5631]
gi|284011869|gb|ADB57822.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
Length = 177
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
DPY ++ +D++K ++ + A+++L+DD I+ D+I + + V ++ + + R+IG
Sbjct: 49 DPYKFMRVQDVVKAIAHGFNPDIAIKLLEDDMITLDVIDLTSYVSDRH-LQRIKGRIIGK 107
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTN 234
G K++E L N ++ V G+TVA LG ++ ++IE+L N
Sbjct: 108 EGSMRKTLEDLLNVHVSVYGKTVAILG--------DVESVAIAREAIEMLIN 151
>gi|257052348|ref|YP_003130181.1| RNA-processing protein [Halorhabdus utahensis DSM 12940]
gi|256691111|gb|ACV11448.1| KH type 1 domain protein [Halorhabdus utahensis DSM 12940]
Length = 182
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D G++ V DP + +K D++K + R E A+R+L D+ D+I
Sbjct: 31 VRLDIDSETGAVAV---ESVGDPVLGLKGPDIVKAIGRGFSPEAALRLLDGDMMMFDVID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I + +N + + RLIG NG T + +E LT +++ G T++ +G
Sbjct: 88 IDAVARNPNDLKRLKGRLIGENGRTRELMEDLTGADVVIYGSTLSIIG 135
>gi|448433701|ref|ZP_21586028.1| RNA-processing protein [Halorubrum tebenquichense DSM 14210]
gi|445686293|gb|ELZ38629.1| RNA-processing protein [Halorubrum tebenquichense DSM 14210]
Length = 180
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ + + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDIDSESGSVAI---EERDDPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + +E L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELMEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|448475910|ref|ZP_21603265.1| RNA-processing protein [Halorubrum aidingense JCM 13560]
gi|445816128|gb|EMA66037.1| RNA-processing protein [Halorubrum aidingense JCM 13560]
Length = 180
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D GS+ + + DP + A D+IK + R E A+ +L D+ + D+I
Sbjct: 31 VRLDVDSESGSVAI---EERDDPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTFDLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHK-------- 212
+ +N +++ R+IG NG T + +E L+ ++V G TV A+G P +
Sbjct: 88 LSEHTRNDNDLQRKKGRIIGENGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAV 147
Query: 213 GLLQSNIGPNGCTLKSIELLTN 234
G+L P+G +E ++N
Sbjct: 148 GMLLDG-APHGAVYSYLERMSN 168
>gi|333986521|ref|YP_004519128.1| KH domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333824665|gb|AEG17327.1| KH domain protein [Methanobacterium sp. SWAN-1]
Length = 192
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
E+D GS+ + T DP + K R ++K + R E A+++ DD+ +II + +
Sbjct: 37 EIDSETGSIAISPREDTEDPLSVWKTRYIVKAIGRGFNPEIALKLTSDDLILEIINLPDY 96
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
V ++K+ ++++ R+IG +G T I +T + V G+TVA +G
Sbjct: 97 VGKSKKAVLRQKGRIIGKDGRTRDIITDMTGVNVSVYGKTVAMIG 141
>gi|126180438|ref|YP_001048403.1| RNA-processing protein [Methanoculleus marisnigri JR1]
gi|125863232|gb|ABN58421.1| KH, type 1, domain protein [Methanoculleus marisnigri JR1]
Length = 180
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 117 FTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIKIGNLVQNKQRFVKR 175
T + DP ++ A +++ ++R E+A R+L D D+ DI+ + +L ++ +
Sbjct: 43 LVTLEGEDPVGVMTATNVVSAINRGFSPERAFRLLDDEDMMLDILDLADLSGTTRQLERL 102
Query: 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
R R+IG +G + IE +T + V G+TVA +G
Sbjct: 103 RGRIIGKSGTSRAQIEDMTATEISVHGKTVAIIG 136
>gi|257076599|ref|ZP_05570960.1| putative RNA-processing protein [Ferroplasma acidarmanus fer1]
Length = 185
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
KA+LD I+ + T + DP + A ++++ ++R E+A+ + D + +I I
Sbjct: 33 KAKLD-IDSENAIVTVYQKNDPLKALMALNVVQAIARGFNPEKAMLLFDDSVQLIVISIK 91
Query: 164 NLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
V + +K R RLIG G T + IE LT Y+ + G TV+ LG
Sbjct: 92 EFVNKDAKRIKEIRGRLIGKEGHTREIIEELTGTYISISGNTVSILG 138
>gi|282164202|ref|YP_003356587.1| hypothetical protein MCP_1532 [Methanocella paludicola SANAE]
gi|282156516|dbj|BAI61604.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 180
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 105 AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIG 163
A +DV S TV + D + +KA ++IK ++R E+A+++L+ +D+ D+I +
Sbjct: 32 ATVDVDSESGTVVIGTEA-DAFKALKAAEVIKAVARGFSPEKALKLLENEDLVLDVIDLS 90
Query: 164 NLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
NL + + + R+IG NG T + IE ++ + V G+T++ +G + L
Sbjct: 91 NLTDSPSDLKRLKGRIIGRNGKTREVIEQMSGARVSVYGKTISIIGDSEQL 141
>gi|344213153|ref|YP_004797473.1| putative RNA-processing protein/KH type 1 domain-containing protein
[Haloarcula hispanica ATCC 33960]
gi|343784508|gb|AEM58485.1| putative RNA-processing protein / KH type 1 domain protein
[Haloarcula hispanica ATCC 33960]
Length = 179
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D +G++ V DP +K D++K + R + A+ +L+DD+ ++I
Sbjct: 28 VRLDIDSEDGTVKV---ESVGDPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 84
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK F +++ RLIG G T + ++ L+ +++ G T+ +G
Sbjct: 85 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIG 132
>gi|448727052|ref|ZP_21709429.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
gi|445792252|gb|EMA42863.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
Length = 182
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 87 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQ 146
+ E +++ + ++ ++D GS+ + DP +K D+++ + R E
Sbjct: 15 IGEGGATMRDIEDRAGVRLDIDSETGSVGI---ESVEDPVQGLKGPDIVRAIGRGFAPED 71
Query: 147 AVRVLQDDISC-DIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
A+ +L D++ ++I I +N+ +++ RLIG NG T + + L+ ++++ G TV
Sbjct: 72 ALTLLDDEMMLLELIDIEAATRNETDLTRKKGRLIGENGRTRELMAELSGAFVVIYGSTV 131
Query: 206 AALG 209
A+G
Sbjct: 132 GAIG 135
>gi|55379140|ref|YP_136990.1| RNA-processing protein [Haloarcula marismortui ATCC 43049]
gi|448664456|ref|ZP_21684259.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|448683897|ref|ZP_21692517.1| RNA-processing protein [Haloarcula japonica DSM 6131]
gi|55231865|gb|AAV47284.1| unknown [Haloarcula marismortui ATCC 43049]
gi|445775101|gb|EMA26115.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|445783470|gb|EMA34299.1| RNA-processing protein [Haloarcula japonica DSM 6131]
Length = 182
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D +G++ V DP +K D++K + R + A+ +L+DD+ ++I
Sbjct: 31 VRLDIDSEDGTVKV---ESVGDPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK F +++ RLIG G T + ++ L+ +++ G T+ +G
Sbjct: 88 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIG 135
>gi|448655130|ref|ZP_21681982.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|448680413|ref|ZP_21690730.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
gi|445765579|gb|EMA16717.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|445768857|gb|EMA19934.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
Length = 182
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D +G++ V DP +K D++K + R + A+ +L+DD+ ++I
Sbjct: 31 VRLDIDSEDGTVKV---ESVGDPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK F +++ RLIG G T + ++ L+ +++ G T+ +G
Sbjct: 88 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIG 135
>gi|325960092|ref|YP_004291558.1| KH domain-containing protein [Methanobacterium sp. AL-21]
gi|325331524|gb|ADZ10586.1| KH domain protein [Methanobacterium sp. AL-21]
Length = 192
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 78/142 (54%), Gaps = 12/142 (8%)
Query: 107 LDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLV 166
+D GS++V T T DP + K+R ++K + R E ++++L D+ +II + + V
Sbjct: 38 IDSETGSISVSPTEATEDPLAVWKSRYIVKAIGRGFNPEISLKLLSDETLLEIINLPDYV 97
Query: 167 -QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCT 225
++K+ ++++ R+IG G T I +T + + G+TVA +G G+ Q +I
Sbjct: 98 GKSKKAIMRQKARIIGKEGRTKDIIIDMTGVDISIYGKTVAIIG---GMEQIHIAK---- 150
Query: 226 LKSIELLTNCYMLVQGQTVAAL 247
+++E++ N V+ +TV A
Sbjct: 151 -EAVEMILNG---VRHKTVYAF 168
>gi|448606648|ref|ZP_21659074.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445738856|gb|ELZ90368.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 180
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L DD+ ++I
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRQKGRLIGENGRTRELMEELTGAEVVIYGSTLGIIG 135
>gi|347523322|ref|YP_004780892.1| KH domain containing protein [Pyrolobus fumarii 1A]
gi|343460204|gb|AEM38640.1| KH domain protein [Pyrolobus fumarii 1A]
Length = 204
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 87 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQ 146
+ EC + + ++ + +D G++ + PY+++KAR+ ++ ++ E+
Sbjct: 32 IGECGKVKEEVMKRTRTRITVDSKNGTVIIEPESPDVPPYMVMKAREFVRAVAYGFSPER 91
Query: 147 AVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
A+RVL +D +I + V + ++R + R+IG G ++IE +T Y+ V V
Sbjct: 92 AMRVLDEDQVLIVIDLKQYVGDAPNHLQRIKGRIIGEQGRARRTIEEMTGTYISVYDSYV 151
Query: 206 AALGPHK 212
A +G ++
Sbjct: 152 AIIGDYE 158
>gi|374723954|gb|EHR76034.1| putative RNA-processing protein [uncultured marine group II
euryarchaeote]
Length = 248
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLV---QNKQRFVKRRQR 178
++DP +K D+IK + R + + A+R+L DD +++ I + V N+QR + R R
Sbjct: 45 SYDPVKAMKFPDVIKAIGRGMAPKAAIRLLDDDHFFELVDIRSFVGKRSNQQRRI--RAR 102
Query: 179 LIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+IG G K IE LT+ + + TV +G +GL
Sbjct: 103 IIGSQGKIRKLIENLTDTQITIYNSTVVLVGEEEGL 138
>gi|448622363|ref|ZP_21669057.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
gi|445754445|gb|EMA05850.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
Length = 180
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L DD+ ++I
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRQKGRLIGENGRTRELMEELTGAEVVIYGSTLGIIG 135
>gi|448560526|ref|ZP_21633974.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|448582774|ref|ZP_21646278.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
gi|445722176|gb|ELZ73839.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|445732422|gb|ELZ84005.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
Length = 180
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L DD+ ++I+
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIE 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|452208196|ref|YP_007488318.1| KH domain protein [Natronomonas moolapensis 8.8.11]
gi|452084296|emb|CCQ37635.1| KH domain protein [Natronomonas moolapensis 8.8.11]
Length = 187
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ V DP + + D++K + R E A R+L+DD+ +++
Sbjct: 31 VRLDIDSETGSVRV---ESVGDPIVGLNGPDIVKAIGRGFAPEDAFRLLEDDMQMFELVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK+ +++ RLIG +G T + + L+ ++V G T+ +G
Sbjct: 88 IEAATRNKKDLRRKKGRLIGEDGRTRELMAELSGADVVVYGTTLGIIG 135
>gi|448611239|ref|ZP_21661873.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
gi|445743671|gb|ELZ95152.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
Length = 180
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L DD+ ++I+
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIE 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|429191701|ref|YP_007177379.1| KH domain-containing protein [Natronobacterium gregoryi SP2]
gi|448325155|ref|ZP_21514553.1| RNA-processing protein [Natronobacterium gregoryi SP2]
gi|429135919|gb|AFZ72930.1| KH domain protein [Natronobacterium gregoryi SP2]
gi|445616294|gb|ELY69922.1| RNA-processing protein [Natronobacterium gregoryi SP2]
Length = 187
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + T DP +K ++++ + R E A+ +L D++ D++
Sbjct: 31 VRLDIDSENGSVAIETV---GDPVRGLKGPEIVRAIGRGFAPEDALTLLDDEMMMFDVVD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E L+ +++ G T+ +G
Sbjct: 88 IDAAARNKNDLQRQKGRLIGENGRTRELMEELSGASVVIYGSTLGIIG 135
>gi|335441209|ref|ZP_08561929.1| putative RNA-processing protein [Halorhabdus tiamatea SARL4B]
gi|334888250|gb|EGM26551.1| putative RNA-processing protein [Halorhabdus tiamatea SARL4B]
Length = 182
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D G++ V DP +K D++K + R E A+R+L++D+ D+I
Sbjct: 31 VRLDIDSETGAVAV---ESVGDPVTALKGPDIVKAIGRGFAPEDALRLLENDMMLFDVID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I + +N + + RLIG +G T + +E LT + + G T++ +G
Sbjct: 88 IDAVARNPNDRKRLKGRLIGEDGRTRELMEDLTGADVAIYGSTLSIIG 135
>gi|389845633|ref|YP_006347872.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|448616749|ref|ZP_21665459.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|388242939|gb|AFK17885.1| putative RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|445751404|gb|EMA02841.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
Length = 180
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L DD+ ++I+
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIE 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|19074875|ref|NP_586381.1| similarity to HYPOTHETICAL PROTEIN Y443_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069600|emb|CAD25985.1| similarity to HYPOTHETICAL PROTEIN Y443_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449328690|gb|AGE94967.1| hypothetical protein ECU11_0750 [Encephalitozoon cuniculi]
Length = 196
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKN-ALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
M + +RSVP P K + +K+ W + +E+ ++ +++ S+ + T T DP
Sbjct: 1 MSGIQTRSVPIHPRKMKSMKDEWMKIYTPIVEMCKVQIRMNIKGKSVDMRTCEHTEDPSY 60
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGC 185
+ ++ I+ ++ P E A+ +L+ D+ D +I + + ++R R+IG G
Sbjct: 61 LERSAQYIEAINIGFPIEDAIALLKFSDVFLDRFEISEVKTLRGLHIERAVGRIIGREGK 120
Query: 186 TLKSIELLTNCYMLVQGQTVAALG 209
T +IE + ++VQGQT+ LG
Sbjct: 121 TRDAIEEFSRSKIIVQGQTIHLLG 144
>gi|433430164|ref|ZP_20407477.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|448543955|ref|ZP_21625416.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|448551115|ref|ZP_21629257.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|448558510|ref|ZP_21633067.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|448573609|ref|ZP_21641092.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|448597756|ref|ZP_21654681.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
gi|432194607|gb|ELK51214.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|445706097|gb|ELZ57984.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|445710671|gb|ELZ62469.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|445712262|gb|ELZ64044.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|445718515|gb|ELZ70205.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|445739217|gb|ELZ90726.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
Length = 180
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L DD+ ++I
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|330506562|ref|YP_004382990.1| hypothetical protein MCON_0291 [Methanosaeta concilii GP6]
gi|328927370|gb|AEB67172.1| conserved hypothetical protein [Methanosaeta concilii GP6]
Length = 180
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 101 HFIKA------ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDD 154
HFI+ E+D G+++V + DP +++ D++K + R E+A+ +L D+
Sbjct: 22 HFIEEKTKTSLEIDSDTGTISVTSAE---DPLQVLRVMDLVKAIGRGFSPERALAILDDE 78
Query: 155 -ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ D++ I + + + R+IG +G + + +E L+ + V G+TVA LG
Sbjct: 79 MLMLDVLDISKTAGTRSDMERLKGRIIGKDGRSREIMERLSGTKVSVYGKTVAILG 134
>gi|448732133|ref|ZP_21714415.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
gi|445805045|gb|EMA55272.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
Length = 182
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 87 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQ 146
+ E ++ E ++ ++D G++ V DP + +K ++++ + R E
Sbjct: 15 IGEGGATMREVEERAEVRLDIDSETGAVAV---ESVGDPVLGLKGPEIVEAIGRGFAPED 71
Query: 147 AVRVLQDDISC-DIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
A+ +L D++ D++ + +NK +++ RLIG NG T + + LT +++ G TV
Sbjct: 72 ALVLLDDEMMMFDLVDVDAATRNKNDLERKKGRLIGENGRTRELMVELTGAEVVIYGTTV 131
Query: 206 AALG 209
A+G
Sbjct: 132 GAIG 135
>gi|443926900|gb|ELU45449.1| hypothetical protein AG1IA_00511 [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 34/85 (40%)
Query: 277 MIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE----------------- 319
M+KRELAKDPKL E+W+RFLP F+ + L+ + K++ + E
Sbjct: 1 MVKRELAKDPKLATESWDRFLPQFRKRHLTSAQKSAKKRERQEGATNANATPLGDGSAPA 60
Query: 320 -----------------YTPFPPPQ 327
YTPFPP Q
Sbjct: 61 PASAPATEKKEKPKKKVYTPFPPAQ 85
>gi|48477323|ref|YP_023029.1| RNA-processing protein [Picrophilus torridus DSM 9790]
gi|48429971|gb|AAT42836.1| putative RNA-binding protein [Picrophilus torridus DSM 9790]
Length = 186
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
++D G +TV+ + I A ++++ ++R E+A+ + +++ +I + +
Sbjct: 40 DIDSKTGLVTVYQKKDALKALI---ALNVVQAIARGFSPEKALTLFNENMQLIVISLKDF 96
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
N R + R R+IG NG T + IE LTN Y+ V G TV+ +G G+
Sbjct: 97 AGNNSNRINELRGRVIGRNGRTRQIIEELTNTYISVSGNTVSIIGDFIGI 146
>gi|292654312|ref|YP_003534209.1| RNA-binding Pno1-like protein [Haloferax volcanii DS2]
gi|448293856|ref|ZP_21483959.1| RNA-processing protein [Haloferax volcanii DS2]
gi|291371752|gb|ADE03979.1| RNA-binding Pno1 homolog [Haloferax volcanii DS2]
gi|445569777|gb|ELY24348.1| RNA-processing protein [Haloferax volcanii DS2]
Length = 180
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L DD+ ++I
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRQKGRLIGENGRTRELMEELTGADVVIYGTTLGIIG 135
>gi|313124877|ref|YP_004035141.1| universal archaeal kh domain-containing protein [Halogeometricum
borinquense DSM 11551]
gi|448287286|ref|ZP_21478499.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
gi|312291242|gb|ADQ65702.1| universal archaeal KH domain protein [Halogeometricum borinquense
DSM 11551]
gi|445572494|gb|ELY27032.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
Length = 180
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + A D+I+ + R E A+ +L D++ ++I
Sbjct: 31 VRLDIDSESGSVAI---EEVGDPVTGMVAPDVIRAVGRGFTPEAALSLLDDEMRAFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ +NK +++ RLIG NG T + +E LT ++++G T+ +G
Sbjct: 88 LQQHTRNKNDLQRQKGRLIGENGRTRELMEELTGAEVVIRGTTLGIIG 135
>gi|124028254|ref|YP_001013574.1| putative RNA-processing protein [Hyperthermus butylicus DSM 5456]
gi|123978948|gb|ABM81229.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
Length = 192
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 125 PYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRLIGPN 183
PY+++KA++ ++ ++ E+A+RVL DD +I + V + ++R + R+IG
Sbjct: 59 PYMVMKAQEFVRAIAYGFSPERAMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEK 118
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALG 209
G K+IE +T Y+ + VA +G
Sbjct: 119 GRARKTIEEMTGTYISIYDNYVAIIG 144
>gi|448731493|ref|ZP_21713792.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
gi|445791821|gb|EMA42440.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
Length = 182
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 87 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQ 146
+ E ++ E ++ ++D G++ + DP + +K ++++ + R E
Sbjct: 15 IGEGGATMREIEERAEVRLDIDSETGAVAI---ESVGDPMLGLKGPEIVEAIGRGFAPED 71
Query: 147 AVRVLQDDIS-CDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
A+ +L D++ +++ + +NK +++ RLIG NG T + + LT +++ G TV
Sbjct: 72 ALALLDDEMMMLELVDVDAATRNKNDLERKKGRLIGENGRTRELMAELTGAEVVIYGTTV 131
Query: 206 AALG 209
A+G
Sbjct: 132 GAIG 135
>gi|401828052|ref|XP_003888318.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999590|gb|AFM99337.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 196
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKN-ALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
MI++ +RS+P P K +KE W + +E+ I+ +++ + + T T DP
Sbjct: 1 MIEIQTRSIPIHPKKMRMMKEEWMKIYTPIVEICKIQIRMNIKGRCVEMRTCEHTEDPSY 60
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGC 185
+ ++ I+ +S P + A+ +L+ D+ D +I + + V+R R+IG G
Sbjct: 61 LERSAQYIEAVSIGFPIDDAIAILKFSDVFLDRFEISEVKTLRGHHVERAVGRIIGREGK 120
Query: 186 TLKSIELLTNCYMLVQGQTVAALG 209
T +IE + ++VQ Q + LG
Sbjct: 121 TKDAIEEFSRSKIIVQEQMIHFLG 144
>gi|448417245|ref|ZP_21579263.1| RNA-processing protein [Halosarcina pallida JCM 14848]
gi|445678468|gb|ELZ30961.1| RNA-processing protein [Halosarcina pallida JCM 14848]
Length = 180
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ ++D G++ + + DP + A D+++ + R E A+ +L DD+ + ++I
Sbjct: 31 VRLDIDSESGAVAI---DEVGDPVAGMLAPDIVRAIGRGFTPEAALSLLDDDMRTFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ +NK +++ RLIG NG T + +E L+ ++++G T+ +G
Sbjct: 88 LQQHTRNKNDLQRQKGRLIGENGRTRELMEELSGADVVIRGTTLGIIG 135
>gi|219853339|ref|YP_002467771.1| RNA-processing protein [Methanosphaerula palustris E1-9c]
gi|219547598|gb|ACL18048.1| KH type 1 domain protein [Methanosphaerula palustris E1-9c]
Length = 179
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
D ++ A ++I+ ++R A +L D D+ D+I++ + +++ + R R+IG
Sbjct: 49 DAVGVLLAGEVIRAINRGFSPAHAFTLLDDEDMILDVIELSSTGDTQRQLDRLRGRIIGR 108
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
+G + + IE +T+ Y+ V G+TVA +G
Sbjct: 109 DGSSREQIETMTSTYLSVYGKTVAIIG 135
>gi|242786400|ref|XP_002480797.1| rRNA processing protein (Rrp20), putative [Talaromyces stipitatus
ATCC 10500]
gi|218720944|gb|EED20363.1| rRNA processing protein (Rrp20), putative [Talaromyces stipitatus
ATCC 10500]
Length = 257
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
R VP P + LK WP + L H ++ ++V ++ + +R T DP + + D
Sbjct: 81 RKVPIPPHRMTPLKTYWPKIYPPLVEHLKLQVRMNVKSRTVELRNSRLTTDPSALQRGAD 140
Query: 134 MIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKSIE 191
+K + S + A+ +L+ DD+ + +I ++ + R R+ G NG T +IE
Sbjct: 141 FVKAFALSFDVDDAIALLRLDDLYINSFEIKDVKTLSGDHLSRAIGRIAGHNGKTKFAIE 200
Query: 192 LLTNCYMLVQGQTVAALGPHK 212
T +++ GQ V LG K
Sbjct: 201 NATRTRVVLAGQKVHILGTFK 221
>gi|315425458|dbj|BAJ47121.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|343484294|dbj|BAJ49948.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 201
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 103 IKAELDVIEGSMTVFTTR---KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDI 159
+ ++D EG++ + + + DP + KARD++ + R E+A+++++D +
Sbjct: 44 VSLQVDSSEGTVVISLAKPVEEGGDPASLFKARDIVTAIGRGFSPEKALKLVEDGTVLTV 103
Query: 160 IKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
I + + V + + R + R+IG G T + IE + V G TVA +G ++
Sbjct: 104 IDLTDYVGDSPNHLARVKARVIGTQGKTRRIIEETCQVDVSVYGDTVAIIGEYE 157
>gi|345006033|ref|YP_004808886.1| KH domain-containing protein [halophilic archaeon DL31]
gi|344321659|gb|AEN06513.1| KH domain protein [halophilic archaeon DL31]
Length = 180
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDIS-CDIIK 161
++ ++D +GS+ + T DP + A D++K + R E A+++L+ ++ +I
Sbjct: 31 VRLDIDSEDGSVGIETV---GDPIAAMDAPDIVKAIGRGFKPESALKLLESEMRRFTLID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ +NK +++ RLIG +G T + +E + +++ G TV +G
Sbjct: 88 LNEQTRNKNDLQRQKGRLIGEDGRTRELMEQFSGAEVVIYGSTVGIIG 135
>gi|159041550|ref|YP_001540802.1| putative RNA-processing protein [Caldivirga maquilingensis IC-167]
gi|157920385|gb|ABW01812.1| KH type 1 domain protein [Caldivirga maquilingensis IC-167]
Length = 184
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 94 VKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQD 153
VKN++E++ +K +++V + S+ V T + +P +IKAR +I+ L+ + A+ +L D
Sbjct: 25 VKNSIEVN-LKVQVEVKDDSV-VLTPMQDANPDSVIKARQIIQALALGFSRDDALELLND 82
Query: 154 DISCDIIKIGNLV-QNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
D D++ + + + ++K+ + R + +IG G +++E LT + V+ + V +G +
Sbjct: 83 DKYLDVVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRNLEELTETKIAVKDKAVGIIGNY 142
>gi|448578897|ref|ZP_21644256.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|448589289|ref|ZP_21649448.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
gi|445724825|gb|ELZ76452.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|445735717|gb|ELZ87265.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
Length = 180
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIK 161
++ ++D GS+ + + DP + + A D+++ + R E A+ +L +++ ++I+
Sbjct: 31 VRLDVDSENGSVAIDSV---GDPVLGMVAPDVVRAVGRGFAPEDAMLLLDQEMAMFELIE 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IDRHTRNKNDMRRKKGRLIGENGRTRELMEELTGADVVIYGSTLGIIG 135
>gi|288561122|ref|YP_003424608.1| RNA-binding protein [Methanobrevibacter ruminantium M1]
gi|288543832|gb|ADC47716.1| RNA-binding protein [Methanobrevibacter ruminantium M1]
Length = 203
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 89 ECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAV 148
E L++NA H ++D + ++ ++ DP + KA ++K ++R A+
Sbjct: 26 ETKHLIENATNTHL---DIDSDDCTVAIYPGENMEDPLGVWKANHIVKAIARGFNPHVAL 82
Query: 149 RVLQDDISCDIIKIGNLV-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAA 207
++ +DD +IIK+ V ++K+ + + R+IG +G T + I + M + G+TV+
Sbjct: 83 KLNKDDTYLEIIKLPLYVGKSKKAMARYKGRIIGKDGKTREIIVDMAEVDMAIYGKTVSL 142
Query: 208 LG 209
+G
Sbjct: 143 IG 144
>gi|261350190|ref|ZP_05975607.1| KH domain-containing protein [Methanobrevibacter smithii DSM 2374]
gi|288860976|gb|EFC93274.1| KH domain-containing protein [Methanobrevibacter smithii DSM 2374]
Length = 206
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
++D +G++ + DP + A ++K ++R E A++++ DDI ++IK+
Sbjct: 37 DIDSEDGTVYITPQENMSDPLGVWNANHIVKAIARGFNPEVALKLVDDDIYLEVIKLPLY 96
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 215
+ ++K + + R+IG NG T + I + M + G+TV+ +G ++
Sbjct: 97 IGKSKNALSRYKGRIIGQNGKTREIIMDMAEVQMAIYGKTVSLIGEMDNIM 147
>gi|212543347|ref|XP_002151828.1| rRNA processing protein (Rrp20), putative [Talaromyces marneffei
ATCC 18224]
gi|210066735|gb|EEA20828.1| rRNA processing protein (Rrp20), putative [Talaromyces marneffei
ATCC 18224]
Length = 257
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
R VP P + LK WP + L H ++ ++V ++ + ++ T DP + + D
Sbjct: 81 RKVPIPPHRMTPLKTYWPKIYPPLVEHLKLQVRMNVKSRTVELRNSKLTNDPSALQRGAD 140
Query: 134 MIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKSIE 191
+K + S + A+ +L+ DD+ + +I ++ + R R+ G NG T +IE
Sbjct: 141 FVKAFALSFDVDDAIALLRLDDLYINSFEIKDVKTLSGDHLSRAIGRIAGHNGKTKFAIE 200
Query: 192 LLTNCYMLVQGQTVAALGPHK 212
T +++ GQ V LG K
Sbjct: 201 NATRTRVVLAGQKVHILGTFK 221
>gi|148643014|ref|YP_001273527.1| putative RNA-processing protein [Methanobrevibacter smithii ATCC
35061]
gi|222445251|ref|ZP_03607766.1| hypothetical protein METSMIALI_00879 [Methanobrevibacter smithii
DSM 2375]
gi|148552031|gb|ABQ87159.1| predicted RNA-binding protein [Methanobrevibacter smithii ATCC
35061]
gi|222434816|gb|EEE41981.1| arCOG04150 universal archaeal KH domain protein [Methanobrevibacter
smithii DSM 2375]
Length = 206
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 106 ELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNL 165
++D +G++ + DP + A ++K ++R E A++++ DDI ++IK+
Sbjct: 37 DIDSEDGTVYITPQENMSDPLGVWNANHIVKAVARGFNPEVALKLVDDDIYLEVIKLPLY 96
Query: 166 V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 215
+ ++K + + R+IG NG T + I + M + G+TV+ +G ++
Sbjct: 97 IGKSKNALSRYKGRIIGQNGKTREIIMDMAEVQMAIYGKTVSLIGEMDNIM 147
>gi|374632061|ref|ZP_09704435.1| universal archaeal KH domain protein [Metallosphaera
yellowstonensis MK1]
gi|373525891|gb|EHP70671.1| universal archaeal KH domain protein [Metallosphaera
yellowstonensis MK1]
Length = 182
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
K PY +K +IK + VP E+A++++ +D ++I + + +K+ ++ + R+I
Sbjct: 42 KNVSPYEAMKVVSVIKAVGYGVPSEEALKLMGEDYILEVIDLKESLGSKESLIRVKGRII 101
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
G +G T + I+ T + V V LG ++ L
Sbjct: 102 GEDGKTKRIIQEYTGVRIHVGDHFVVMLGTYEQL 135
>gi|15899129|ref|NP_343734.1| RNA-processing protein [Sulfolobus solfataricus P2]
gi|284173756|ref|ZP_06387725.1| putative RNA-processing protein [Sulfolobus solfataricus 98/2]
gi|384432724|ref|YP_005642082.1| KH domain-containing protein [Sulfolobus solfataricus 98/2]
gi|13815678|gb|AAK42524.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600878|gb|ACX90481.1| KH domain protein [Sulfolobus solfataricus 98/2]
Length = 189
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRL 179
K + Y +KA +I+ + + A R+L D+ + D+I + L+ + ++R + R+
Sbjct: 45 KGQNQYETLKAVSVIRAIGLGFDEQSAFRLLSDEYTLDVIDLKALIGSNPDTIRRVKGRI 104
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTN 234
IG NG T + I+ T + + G + LGP+ Q I K+IELL +
Sbjct: 105 IGENGKTKRIIQEYTGVDISIYGHYIGVLGPYD---QVQIAK-----KAIELLID 151
>gi|307596085|ref|YP_003902402.1| KH domain-containing protein [Vulcanisaeta distributa DSM 14429]
gi|307551286|gb|ADN51351.1| KH domain protein [Vulcanisaeta distributa DSM 14429]
Length = 198
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
+ E+ +I G+ T F ++KA+++I+ +S Y A + DD + +II +
Sbjct: 43 RGEVTIIPGNNTNFDQ--------LMKAKNIIEAISYGFDYNDAQNLRSDDYTLEIIDLR 94
Query: 164 NLV-QNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+ + ++K + R + R+IG +G + ++ LT+ ++V + +A LGP++ +
Sbjct: 95 DYIDKDKSNHISRIKARIIGEDGRAKRVLQELTDTNIVVGDKYIAILGPYENV 147
>gi|407921850|gb|EKG14988.1| K-like protein [Macrophomina phaseolina MS6]
Length = 253
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+++ +R VP P + LK WP + L H ++ +++ ++ + T++ T D +
Sbjct: 72 MRIETRKVPIPPHRMTPLKASWPKIYPPLVEHLKLQVRMNIKNKAVELRTSKHTTDSGAL 131
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCT 186
K D +K S + A+ +L+ DD+ + +I ++ N + R+ G +G T
Sbjct: 132 QKGEDFVKAFSLGFDVDDAIALLRLDDLYIETFEIKDVKTLNGDHLSRAIGRIAGKDGKT 191
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGL 214
+IE + +++ Q + LG K +
Sbjct: 192 KFAIENASRTRIVLADQKIHILGGFKNI 219
>gi|432329629|ref|YP_007247772.1| universal archaeal KH domain protein [Methanoregula formicicum
SMSP]
gi|432136338|gb|AGB01265.1| universal archaeal KH domain protein [Methanoregula formicicum
SMSP]
Length = 181
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
D +++A +++ ++R E+A +++D D+ ++I + + N ++ + R R+IG
Sbjct: 51 DTVSLLRAVEIVNAINRGFSPERAFEMIEDEDLLLEVIDLAGMADNPRQLDRLRGRIIGK 110
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
+G + IE +T+ + V G+TVA +G
Sbjct: 111 DGRAREQIEDMTDVEISVFGKTVALIG 137
>gi|374629194|ref|ZP_09701579.1| KH domain protein [Methanoplanus limicola DSM 2279]
gi|373907307|gb|EHQ35411.1| KH domain protein [Methanoplanus limicola DSM 2279]
Length = 180
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 107 LDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIKIGNL 165
+D EG +TV DP ++ +I+ ++R ++A+ +L D D+ DII +
Sbjct: 37 IDSEEGLVTV----SGEDPVNVLNTSQIIRAINRGFSPQRALTLLDDEDMMLDIIDLTAY 92
Query: 166 VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
++ + R R+IG G + + IE +T M V G+TVA +G
Sbjct: 93 CNTTKQMERIRGRIIGREGKSREQIEDMTGAIMSVLGKTVAIIG 136
>gi|303313736|ref|XP_003066877.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240106544|gb|EER24732.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320032574|gb|EFW14526.1| pre-rRNA-processing protein PNO1 [Coccidioides posadasii str.
Silveira]
Length = 255
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 64 IKARD-MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRK 121
IKA D ++ +R VP P + LK WP + L H ++ +++ ++ + T++
Sbjct: 67 IKATDGAYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQVRMNIKSKAVELRTSKH 126
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRL 179
T D + K D IK + + A+ +L+ DD+ + +I ++ N + + R+
Sbjct: 127 TTDTGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLNGEHLGRAIGRI 186
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
G +G T +IE + +++ Q + LG
Sbjct: 187 AGKDGKTKFAIENASRTRVVLADQKIHILG 216
>gi|70991373|ref|XP_750535.1| rRNA processing protein (Rrp20) [Aspergillus fumigatus Af293]
gi|74671064|sp|Q4WNG7.1|PNO1_ASPFU RecName: Full=Pre-rRNA-processing protein pno1
gi|66848168|gb|EAL88497.1| rRNA processing protein (Rrp20), putative [Aspergillus fumigatus
Af293]
Length = 252
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 40 AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALE 99
+++ + E S VFT I A ++++ +R VP P + LK WP + L
Sbjct: 48 SDMRIDEESRPVFTP--------ITDAGTVLRVETRKVPVPPHRMTPLKANWPKIYPPLV 99
Query: 100 LHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISC 157
H ++ +++ ++ + T++ T D + K D +K + + A+ +L+ DD+
Sbjct: 100 EHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYI 159
Query: 158 DIIKIGNLVQ--NKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+I ++ N + + R+ G +G T +IE + +++QG V LG + L
Sbjct: 160 RSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQGTKVTILGRFRDL 218
>gi|159124091|gb|EDP49209.1| rRNA processing protein (Rrp20), putative [Aspergillus fumigatus
A1163]
Length = 252
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 40 AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALE 99
+++ + E S VFT I A ++++ +R VP P + LK WP + L
Sbjct: 48 SDMRIDEESRPVFTP--------IADAGTVLRVETRKVPVPPHRMTPLKANWPKIYPPLV 99
Query: 100 LHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISC 157
H ++ +++ ++ + T++ T D + K D +K + + A+ +L+ DD+
Sbjct: 100 EHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYI 159
Query: 158 DIIKIGNLVQ--NKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+I ++ N + + R+ G +G T +IE + +++QG V LG + L
Sbjct: 160 RSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQGTKVTILGRFRDL 218
>gi|396082435|gb|AFN84044.1| putative RNA-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 196
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKN-ALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
M ++ +RS+P P K +KE W + +E+ I+ +++ + + T T DP
Sbjct: 1 MTEIQTRSIPIHPRKMRGMKEEWMRIYTPIVEICKIQIRMNIKGRCVEMRTCEHTEDPSY 60
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGC 185
+ ++ I+ + P E A+ +L+ D+ D +I + + ++R R+IG G
Sbjct: 61 LERSAQYIEAVHIGFPIEDAIAILKFSDVFLDRFEISEVKTLRGLHIERAIGRIIGREGK 120
Query: 186 TLKSIELLTNCYMLVQGQTVAALG 209
T +IE + ++VQ Q + LG
Sbjct: 121 TKNAIEEFSRSKIIVQDQMIHLLG 144
>gi|429216945|ref|YP_007174935.1| KH domain-containing protein [Caldisphaera lagunensis DSM 15908]
gi|429133474|gb|AFZ70486.1| KH domain protein [Caldisphaera lagunensis DSM 15908]
Length = 198
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+K+ S+ +P E KE +LK + +KN +E +K E+D +T+ P +
Sbjct: 12 VKIYSQ-IPSEN-KEIFLKH-FNEIKNYIEERLKVKVEIDNNSSLITIEPLDNNTSPADM 68
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTL 187
+KA+D+I+ LS E+A+++L ++ +I I + V + +KR R+IG +G
Sbjct: 69 MKAKDIIQALSIGFVKEEALKLLDEENVLIVIDIKSKVGDSNNHIKRVMGRIIGEDGRAK 128
Query: 188 KSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYM 237
++IE +T + + + +G + ++ I G IELL + M
Sbjct: 129 RTIEEITGTSIHIGNNLIGVIGDYD---RATIAQYG-----IELLIDGRM 170
>gi|383320176|ref|YP_005381017.1| KH domain-containing protein [Methanocella conradii HZ254]
gi|379321546|gb|AFD00499.1| universal archaeal KH domain protein [Methanocella conradii HZ254]
Length = 180
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 94 VKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ- 152
VK A+E A LDV + + + D ++A ++IK ++R E+A+R+L
Sbjct: 22 VKKAIE-EKTGATLDV-DSESGIVVVQSEADALKALRAAEVIKAIARGFSPEKALRLLDN 79
Query: 153 DDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
+D+ DI+ + L + + + R+IG G T + IE +T + V G+T++ +G +
Sbjct: 80 EDLILDIMDLSVLSDSPADLKRIKGRIIGKGGKTREVIEQMTGARLSVYGKTISIIGDAE 139
Query: 213 GL 214
L
Sbjct: 140 QL 141
>gi|323309950|gb|EGA63146.1| Krr1p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 33/68 (48%), Gaps = 19/68 (27%)
Query: 8 KIPEFKKEDNP-------------------HEYLKECWPLVKNALELHFIKAELDVIEGS 48
KI EFK+EDN YLK W V AL+ H I LD++EGS
Sbjct: 20 KIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIXCVLDLVEGS 79
Query: 49 MTVFTTRK 56
MTV TTRK
Sbjct: 80 MTVKTTRK 87
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRK 121
+E YLK W V AL+ H I LD++EGSMTV TTRK
Sbjct: 49 RESYLKTIWNDVTRALDKHNIXCVLDLVEGSMTVKTTRK 87
>gi|255514057|gb|EET90320.1| KH type 1 domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 207
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 131 ARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSI 190
A+++I R + A ++ D I I +NK R + R RLIG NG T + I
Sbjct: 83 AKNVIYAFGRGFGIDVAAKLTHPDYYFSSIDISEFTRNKNRIREIRARLIGTNGRTKRYI 142
Query: 191 ELLTNCYMLVQGQTVAALGPHKGLLQSNIGPN 222
E++++ + + G T++ +G + ++ N
Sbjct: 143 EVVSSAKVSIFGDTISFIGKSDCIEEAETAAN 174
>gi|110668939|ref|YP_658750.1| RNA-processing protein [Haloquadratum walsbyi DSM 16790]
gi|385804524|ref|YP_005840924.1| ribosomal RNA assembly protein [Haloquadratum walsbyi C23]
gi|109626686|emb|CAJ53153.1| KH domain protein [Haloquadratum walsbyi DSM 16790]
gi|339730016|emb|CCC41321.1| KH domain protein [Haloquadratum walsbyi C23]
Length = 180
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIK 161
++ +D GS+ + DP + A D+++ + R A+ +L D++ + ++I
Sbjct: 31 VRLNIDSETGSVAI---DDVGDPVRGMLAPDIVRAIGRGFTPTAALSILDDEMRTFELID 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ +NK +++ RLIG NG T + +E LT ++++G T+ +G
Sbjct: 88 LDAHTRNKNDLQRQKGRLIGENGRTRELMEELTGAEVVIRGTTLGVIG 135
>gi|345560486|gb|EGX43611.1| hypothetical protein AOL_s00215g347 [Arthrobotrys oligospora ATCC
24927]
Length = 252
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 65 KARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTW 123
+++ + K+ +R VP P + LK WP + + H + +++ + + +KT
Sbjct: 66 QSQKIYKIETRKVPVPPHRFSPLKAAWPKIYQPIVEHLKVDVRMNLANKCVEIRNNKKTE 125
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIG 181
DP + KA D +K+ + + A+ +L+ D++ + +I ++ + + R R+ G
Sbjct: 126 DPGALQKAADFVKVFTLGFDIDDAIALLRLDELYTETFEIKDVKTLQGEHLSRAIGRIAG 185
Query: 182 PNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+G T +IE T +++ + LG + +
Sbjct: 186 KDGKTRFAIENATKTRIVLADSKIHILGAFQNI 218
>gi|121709882|ref|XP_001272557.1| rRNA processing protein (Rrp20), putative [Aspergillus clavatus
NRRL 1]
gi|119400707|gb|EAW11131.1| rRNA processing protein (Rrp20), putative [Aspergillus clavatus
NRRL 1]
Length = 260
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 54 TRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEG 112
+R + P I ++ ++++ +R VP P + LK WP + L H ++ +++
Sbjct: 64 SRPVFTP--IADSKTVLRVETRKVPVPPHRMTPLKANWPKIYPPLVEHLKLQVRMNIKNR 121
Query: 113 SMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQ--NK 169
++ + T++ T D + K D +K + + A+ +L+ DD+ +I ++ N
Sbjct: 122 AVELRTSKFTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIRSFEIRDVKASLNG 181
Query: 170 QRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+ + R+ G +G T +IE + +++QG + LG K L
Sbjct: 182 EHLSRAIGRIAGKDGKTKFAIENASRTRVVLQGTKITILGRFKDL 226
>gi|119467906|ref|XP_001257759.1| rRNA processing protein (Rrp20), putative [Neosartorya fischeri
NRRL 181]
gi|119405911|gb|EAW15862.1| rRNA processing protein (Rrp20), putative [Neosartorya fischeri
NRRL 181]
Length = 260
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 40 AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALE 99
+++ + E S VFT I A ++++ +R VP P + LK WP + L
Sbjct: 56 SDMRIDEESRPVFTP--------IADAGTVLRVETRKVPVPPHRMTPLKANWPKIYPPLV 107
Query: 100 LHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISC 157
H ++ +++ ++ + T++ T D + K D +K + + A+ +L+ DD+
Sbjct: 108 EHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYI 167
Query: 158 DIIKIGNLVQ--NKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+I ++ N + + R+ G +G T +IE + +++QG V LG + L
Sbjct: 168 RSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQGTKVTILGRFRDL 226
>gi|307354951|ref|YP_003896002.1| KH domain-containing protein [Methanoplanus petrolearius DSM 11571]
gi|307158184|gb|ADN37564.1| KH domain protein [Methanoplanus petrolearius DSM 11571]
Length = 180
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
D +++KA D+I ++R +++ +L+D D+ DII + +N ++ + R R+IG
Sbjct: 50 DAPLVLKAADIITAINRGFSPKRSFCLLEDEDMMLDIIDLTAACKNPKQMERVRGRIIGK 109
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
G + IE +T + V G+TVA +G
Sbjct: 110 AGKAREQIEDMTGAEISVLGKTVAIIG 136
>gi|124486562|ref|YP_001031178.1| putative RNA-processing protein [Methanocorpusculum labreanum Z]
gi|124364103|gb|ABN07911.1| KH, type 1, domain protein [Methanocorpusculum labreanum Z]
Length = 180
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
I++ ++IK + R E+A ++L+DD + +I + ++ Q+ + R R+IG G
Sbjct: 55 IRSMEVIKAIGRGFSPERAKKLLEDDDMILTLIDLSDIADTPQKLARIRGRIIGREGKAR 114
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+ IE +T + V G+TV +G
Sbjct: 115 EQIENMTGALISVYGKTVGIIG 136
>gi|325967914|ref|YP_004244106.1| KH type 1 domain-containing protein [Vulcanisaeta moutnovskia
768-28]
gi|323707117|gb|ADY00604.1| KH type 1 domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 197
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 96 NALELHF-IKAELDVIEGSMTVFTTRKT-WDPYIIIKARDMIKLLSRSVPYEQAVRVLQD 153
NA+E F +K +D +G +T+ T +D +IKA+++I+ +S Y A + D
Sbjct: 27 NAIEEEFGVKIIVDNDKGEVTITPGNSTSFDQ--LIKAKNIIEAISYGFDYNDAQNLRSD 84
Query: 154 DISCDIIKIGNLV-QNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
D + +I+ + + V ++K + R + R+IG +G K ++ LT+ +++ + +A LG +
Sbjct: 85 DYTLEILDLKDYVDKDKTNHISRIKARIIGEDGRAKKVLQELTDTNIVIGDRYIAILGLY 144
Query: 212 KGL 214
+ +
Sbjct: 145 ENV 147
>gi|328352867|emb|CCA39265.1| Pre-rRNA-processing protein PNO1 [Komagataella pastoris CBS 7435]
Length = 364
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR V P + LK WP + L H ++ +++ ++ + T KT DP +
Sbjct: 183 VKLESRKVAVPPHRMGPLKTAWPKIYPPLVDHLHLQVRMNLRTKTVEMRTCAKTVDPGAL 242
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCT 186
K D +K + + A+ +L+ DD+ D +I ++ + + R+ G +G T
Sbjct: 243 QKGADFVKAFTLGFDIDDAIALLRLDDLYIDTFEIKDIKTLHGDHLSRAIGRIAGKDGRT 302
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 303 KFAIENATRTRIVLADSKIHILG 325
>gi|91772948|ref|YP_565640.1| RNA-processing protein [Methanococcoides burtonii DSM 6242]
gi|91711963|gb|ABE51890.1| KH type RNA-binding protein [Methanococcoides burtonii DSM 6242]
Length = 178
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
DP ++A D+I+ + R E+ DD I +II + + ++ + R+IG
Sbjct: 49 DPVGAMRAADVIQAIGRGFNPEKTYIFFDDDLIMLEIIDLSQTASTPKELLRLKGRIIGK 108
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
G T + IE L M V G+TV+A+G
Sbjct: 109 GGKTREIIESLIGVKMSVYGKTVSAIG 135
>gi|396457924|ref|XP_003833575.1| similar to pre-rRNA-processing protein pno1 [Leptosphaeria maculans
JN3]
gi|312210123|emb|CBX90210.1| similar to pre-rRNA-processing protein pno1 [Leptosphaeria maculans
JN3]
Length = 257
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
R VP P + LK WP + L H ++ +++ S+ + T+ T D + K D
Sbjct: 81 RKVPIPPHRMTPLKSAWPKIYPPLVEHLKLQVRMNIKTKSVELRTSSSTTDTGALQKGED 140
Query: 134 MIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTLKSIE 191
+K + + A+ +L+ DD+ + +I ++ N + + R+ G +G T +IE
Sbjct: 141 FVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLNGEHLGRAIGRIAGKDGKTKFAIE 200
Query: 192 LLTNCYMLVQGQTVAALGPHKGL 214
+ +++ Q + LG K +
Sbjct: 201 NASRTRVVLADQKIHILGGFKNI 223
>gi|258564628|ref|XP_002583059.1| hypothetical protein UREG_07832 [Uncinocarpus reesii 1704]
gi|237908566|gb|EEP82967.1| hypothetical protein UREG_07832 [Uncinocarpus reesii 1704]
Length = 248
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 64 IKARD-MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRK 121
I+A D ++ +R VP P + LK WP + L H ++ +++ ++ + T++
Sbjct: 67 IRATDGSYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQVRMNIKNKAIELRTSKH 126
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRL 179
T D + K D IK + + A+ +L+ DD+ + +I ++ N + + R+
Sbjct: 127 TTDVGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLNGEHLGRAVGRI 186
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
G +G T +IE + +++ Q + LG + +
Sbjct: 187 AGKDGKTKFAIENASRTRVVLADQKIHILGGFRNI 221
>gi|303391385|ref|XP_003073922.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
gi|303303071|gb|ADM12562.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
Length = 196
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 69 MIKLLSRSVPYEP-----LKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTW 123
M ++ +RSVP P +KEE++K P+V E+ I+ +++ + + T T
Sbjct: 1 MTEIQTRSVPIHPKKMRGMKEEWMKIYTPIV----EICKIQIRMNIKGRCVEMRTCDHTE 56
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIG 181
D + ++ I ++ P E A+ +L+ D+ D +I + + ++R R+IG
Sbjct: 57 DSSYLERSAQYINAVNIGFPIEDAIAILKFADVFLDHFEISEVKTLRGLHIERAIGRIIG 116
Query: 182 PNGCTLKSIELLTNCYMLVQGQTVAALG 209
G T +IE + ++VQ QT+ LG
Sbjct: 117 REGKTKSAIEEFSRSKIIVQDQTIHFLG 144
>gi|119185111|ref|XP_001243372.1| hypothetical protein CIMG_07268 [Coccidioides immitis RS]
gi|121931649|sp|Q1DQZ5.1|PNO1_COCIM RecName: Full=Pre-rRNA-processing protein PNO1
gi|392866252|gb|EAS28864.2| pre-rRNA-processing protein PNO1 [Coccidioides immitis RS]
Length = 255
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ ++ + T++ T D +
Sbjct: 75 RIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQVRMNIKSKAVELRTSKNTTDTGALQ 134
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQ-NKQRFVKRRQRLIGPNGCTL 187
K D IK + + A+ +L+ DD+ + +I ++ N + + R+ G +G T
Sbjct: 135 KGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKPLNGEHLGRAIGRIAGKDGKTK 194
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 195 FAIENASRTRVVLADQKIHILG 216
>gi|330835297|ref|YP_004410025.1| putative RNA-processing protein [Metallosphaera cuprina Ar-4]
gi|329567436|gb|AEB95541.1| putative RNA-processing protein [Metallosphaera cuprina Ar-4]
Length = 180
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
K +PY +K +I L VP A +++ ++ D+I + L +K + + R+I
Sbjct: 42 KNQNPYQALKTVSVINALGLGVPVSDAFKLIGEEYILDVIDLKQLSHDKAVMSRIKGRII 101
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
G G T + I+ T ++V VA +G ++
Sbjct: 102 GEGGKTKRIIQEYTGVTIVVSDHHVALIGTYE 133
>gi|344303452|gb|EGW33701.1| hypothetical protein SPAPADRAFT_59068 [Spathaspora passalidarum
NRRL Y-27907]
Length = 257
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL R VP P + LK CW + L H ++ +++ ++ + T + T DP +
Sbjct: 76 VKLEGRKVPIPPHRMTPLKNCWVKIYPPLVDHLKLQVRMNLKTKTVELRTNKNTTDPGAL 135
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D IK + + A+ +L+ DD+ + +I ++ + R R+ G +G T
Sbjct: 136 QKGADFIKAFTLGFDIDDAIALLRLDDLYIETFEIKDVKTLTGDHLSRAIGRIAGKDGKT 195
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + G
Sbjct: 196 KFAIENATRTRIVLADSKIHIFG 218
>gi|146303436|ref|YP_001190752.1| RNA-processing protein [Metallosphaera sedula DSM 5348]
gi|145701686|gb|ABP94828.1| KH, type 1, domain protein [Metallosphaera sedula DSM 5348]
Length = 178
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 47/92 (51%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
K +PY +K +I+ + V A++++ +++ D+I + + ++ + + R+I
Sbjct: 42 KNQNPYQALKVVSVIRAIGLGVSVSDALKLMGEEVMMDVIDLKEISNSRDNMTRVKGRII 101
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
G G T K I+ T +++ G + LG ++
Sbjct: 102 GEGGKTKKIIQEYTGVSVVISGHYITLLGNYE 133
>gi|320583541|gb|EFW97754.1| putative RNA-binding protein Pno1p [Ogataea parapolymorpha DL-1]
Length = 253
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR V P + LK WP + L H ++ +++ ++ + T KT DP +
Sbjct: 72 VKLESRKVAVPPHRMSPLKNAWPKIYPPLVDHLKLQVRMNLKTKNVELRTCSKTTDPGAL 131
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D IK + + A+ +L+ DD+ + +I ++ + + R R+ G +G T
Sbjct: 132 QKGADFIKAFTLGFDIDDAIALLRLDDLYIESFEIKDVKTLQGDHLSRAIGRIAGKDGKT 191
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 192 KFAIENATRTRIVLADSKIHILG 214
>gi|386003028|ref|YP_005921327.1| hypothetical protein Mhar_2354 [Methanosaeta harundinacea 6Ac]
gi|357211084|gb|AET65704.1| hypothetical protein Mhar_2354 [Methanosaeta harundinacea 6Ac]
Length = 177
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIKIGNLVQNKQRFVKRRQRLIGP 182
DP + ++ ++++ + R E+A+ +L+D++ D+I + K + + R+IG
Sbjct: 48 DPIMAMRLAEVVRAIGRGFSPERALPILEDELLMLDVIDLSRAFNTKSDMARVKGRIIGK 107
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
+G T + E LT + V G+T+ +G
Sbjct: 108 DGRTREIAEKLTGAGISVYGKTIGIIG 134
>gi|73669290|ref|YP_305305.1| RNA-processing protein [Methanosarcina barkeri str. Fusaro]
gi|72396452|gb|AAZ70725.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 182
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 DMIKLLSRSVPYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIE 191
+ +K + R E+A+ +L DD + DII + ++ + + + R+IG NG T + E
Sbjct: 59 ETLKAIGRGFSPEKALELLADDMLMLDIIDLSDVANTPKELQRIKGRIIGRNGKTRELAE 118
Query: 192 LLTNCYMLVQGQTVAALG 209
L N + V G+TV+ LG
Sbjct: 119 TLINVKISVYGKTVSILG 136
>gi|336476185|ref|YP_004615326.1| KH domain-containing protein [Methanosalsum zhilinae DSM 4017]
gi|335929566|gb|AEH60107.1| KH domain protein [Methanosalsum zhilinae DSM 4017]
Length = 178
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISC-DIIKIGNLVQNKQRFVKRRQRLIGP 182
DP ++A D+I ++R E+ + + D++ D I I ++ + + R+IG
Sbjct: 49 DPVKAMRAADVIHAIARGFNPEKVLDMFDDEMLIFDFIDISQFAGTQKELKRLKGRIIGK 108
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
+G +IE LT + + G+TV+ +G
Sbjct: 109 DGKARATIETLTGVKISIYGKTVSMIG 135
>gi|20089777|ref|NP_615852.1| putative RNA-processing protein [Methanosarcina acetivorans C2A]
gi|19914717|gb|AAM04332.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 182
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
DP + + +K + R E+A+++L DD + ++I + ++ + + + R+IG
Sbjct: 50 DPLKEFRILETLKAIGRGFSPEKALQILDDDMLMLEVIDLSDIASTPKELQRIKGRIIGR 109
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
NG T + E L N + V G+TV+ LG
Sbjct: 110 NGRTRELAESLINVKISVYGKTVSILG 136
>gi|154151996|ref|YP_001405614.1| RNA-processing protein [Methanoregula boonei 6A8]
gi|154000548|gb|ABS56971.1| KH, type 1, domain protein [Methanoregula boonei 6A8]
Length = 181
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 107 LDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIKIGNL 165
+D EG + V + P +++A ++I L+ ++A +++D D+ DII + +
Sbjct: 36 IDSKEGLVKVEAAEENAIP--LLRAVEIINALNAGFSPQRAFEMIEDEDLLLDIIDLSRV 93
Query: 166 VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
N ++ + R R+IG +G + IE +T+ + V G TV +G
Sbjct: 94 ADNPRQLDRLRGRIIGKDGRAREQIENMTDVDISVFGHTVGLIG 137
>gi|261201300|ref|XP_002627050.1| pre-rRNA-processing protein PNO1 [Ajellomyces dermatitidis
SLH14081]
gi|239592109|gb|EEQ74690.1| pre-rRNA-processing protein PNO1 [Ajellomyces dermatitidis
SLH14081]
gi|239611728|gb|EEQ88715.1| pre-rRNA-processing protein PNO1 [Ajellomyces dermatitidis ER-3]
Length = 268
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ S+ + T++ T D +
Sbjct: 88 RVETRKVPVPPHRMTPLKATWPKIYPPLVEHLKLQVRMNIKNRSVELRTSKHTTDTGALQ 147
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTL 187
K D +K + + A+ +L+ DD+ + +I ++ + + R+ G +G T
Sbjct: 148 KGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLGGEHLGRAVGRIAGKDGKTK 207
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 208 FAIENASRTRVVLADQKIHILG 229
>gi|327348256|gb|EGE77113.1| pre-rRNA-processing protein PNO1 [Ajellomyces dermatitidis ATCC
18188]
Length = 267
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ S+ + T++ T D +
Sbjct: 87 RVETRKVPVPPHRMTPLKATWPKIYPPLVEHLKLQVRMNIKNRSVELRTSKHTTDTGALQ 146
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTL 187
K D +K + + A+ +L+ DD+ + +I ++ + + R+ G +G T
Sbjct: 147 KGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLGGEHLGRAVGRIAGKDGKTK 206
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 207 FAIENASRTRVVLADQKIHILG 228
>gi|354545673|emb|CCE42400.1| hypothetical protein CPAR2_200430 [Candida parapsilosis]
Length = 259
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR VP P + LK W V L H ++ +++ ++ + T + T DP +
Sbjct: 78 VKLESRKVPVPPHRMTPLKNVWTKVYPPLVDHLKLQVRMNLKTKTVELKTNKSTTDPGAL 137
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + +I ++ + R R+ G +G T
Sbjct: 138 QKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLTGDHLSRAIGRIAGKDGKT 197
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 198 KFAIENATRTRIVLADSKIHILG 220
>gi|240103481|ref|YP_002959790.1| putative RNA-processing protein [Thermococcus gammatolerans EJ3]
gi|239911035|gb|ACS33926.1| RNA-binding protein, containing KH domain [Thermococcus
gammatolerans EJ3]
Length = 234
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K E+D G + + T+KT DP + KARD++ + R E+A R+ + + +I+ +
Sbjct: 69 KIEVDSETGEVFITATKKTKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVNLT 128
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
++V K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 129 DIVVGNEKNALPRVRGRIIGRRGRTREIIEEMSGADVSVYGKTVAIIG 176
>gi|18314094|ref|NP_560761.1| putative RNA-processing protein [Pyrobaculum aerophilum str. IM2]
gi|18161678|gb|AAL64943.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 175
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT---RKTWDPYIIIKA 131
R + YEP+ ++ L+ VK + + ELD E + + T T D I+K
Sbjct: 7 RGIIYEPIDKKRLRAAREFVKLVDGKYGHRVELD--EKQLYIKITPGPEATVDS--ILKI 62
Query: 132 RDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIE 191
RDM + ++ E+A+ + D+ + +I++ + + R+IG G ++IE
Sbjct: 63 RDMARAIALGFDPEKALMLENDEYTLAVIELKEYTDKPNHLRRIKGRIIGEEGRAKRTIE 122
Query: 192 LLTNCYMLVQGQTVAALG 209
L M+V VA LG
Sbjct: 123 NLAEVSMVVGDNYVALLG 140
>gi|240273185|gb|EER36707.1| pre-rRNA-processing protein PNO1 [Ajellomyces capsulatus H143]
gi|325089211|gb|EGC42521.1| pre-rRNA-processing protein PNO1 [Ajellomyces capsulatus H88]
Length = 264
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ S+ + T++ T D +
Sbjct: 84 RVETRKVPVPPHRMTPLKATWPKIYPPLVEHLKLQVRMNIKNRSVELRTSKHTTDAGALQ 143
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTL 187
K D +K + + A+ +L+ DD+ + +I ++ + + R+ G +G T
Sbjct: 144 KGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLGGEHLGRAIGRIAGKDGKTK 203
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 204 FAIENASRTRVVLADQKIHILG 225
>gi|315045604|ref|XP_003172177.1| pre-rRNA-processing protein PNO1 [Arthroderma gypseum CBS 118893]
gi|311342563|gb|EFR01766.1| pre-rRNA-processing protein PNO1 [Arthroderma gypseum CBS 118893]
Length = 256
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 63 IIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRK 121
I + D ++ +R VP P + LK WP + L H ++ +++ ++ + T++
Sbjct: 68 IKSSGDAYRVETRKVPIPPHRLTPLKAEWPKIYPPLVEHLKLQVRMNMKNRAVELRTSKH 127
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRL 179
T D + K D +K + + A+ +L+ DD+ + +I ++ N + + R+
Sbjct: 128 TTDTGALQKGEDFVKAFTLGFDTDDAIALLRLDDLYIETFEIKDVKTLNGEHLGRAIGRI 187
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
G +G T +IE + +++ Q + LG
Sbjct: 188 AGKDGKTKFAIENASRTRVVLADQKIHILG 217
>gi|296805323|ref|XP_002843486.1| pre-rRNA-processing protein PNO1 [Arthroderma otae CBS 113480]
gi|238844788|gb|EEQ34450.1| pre-rRNA-processing protein PNO1 [Arthroderma otae CBS 113480]
Length = 254
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 63 IIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRK 121
I + D ++ +R VP P + LK WP + L H ++ +++ ++ + T++
Sbjct: 66 IKSSGDAYRVETRKVPIPPHRLTPLKAEWPKIYPPLVEHLKLQVRMNMKNRAVELRTSKH 125
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRL 179
T D + K D +K + + A+ +L+ DD+ + +I ++ N + + R+
Sbjct: 126 TTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLNGEHLGRAIGRI 185
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
G +G T +IE + +++ Q + LG
Sbjct: 186 AGKDGKTKFAIENASRTRVVLADQKIHILG 215
>gi|322368236|ref|ZP_08042805.1| putative RNA-processing protein [Haladaptatus paucihalophilus
DX253]
gi|320552252|gb|EFW93897.1| putative RNA-processing protein [Haladaptatus paucihalophilus
DX253]
Length = 182
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV-PYEQAVRVLQDDISCDIIK 161
++ ++D +GS+ V +T DP +KA +++K + R P E V + D + D++
Sbjct: 31 VRLDIDSDDGSVRV---EQTGDPVRGLKAPEIVKAIGRGFSPEEALVLLDDDLMLFDLLD 87
Query: 162 IGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
I +NK +++ RLIG NG T + +E LT +++ G T+ +G
Sbjct: 88 IEAAARNKNDLQRQKGRLIGENGRTRQLMEELTGANVVIYGTTLGIIG 135
>gi|154278894|ref|XP_001540260.1| hypothetical protein HCAG_04100 [Ajellomyces capsulatus NAm1]
gi|150412203|gb|EDN07590.1| hypothetical protein HCAG_04100 [Ajellomyces capsulatus NAm1]
Length = 264
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ S+ + T++ T D +
Sbjct: 84 RVETRKVPVPPHRMTPLKATWPKIYPPLVEHLKLQVRMNIKNRSVELRTSKHTTDAGALQ 143
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTL 187
K D +K + + A+ +L+ DD+ + +I ++ + + R+ G +G T
Sbjct: 144 KGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLGGEHLGRAIGRIAGKDGKTK 203
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 204 FAIENASRTRVVLADQKIHILG 225
>gi|225554383|gb|EEH02682.1| pre-rRNA-processing protein PNO1 [Ajellomyces capsulatus G186AR]
Length = 264
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ S+ + T++ T D +
Sbjct: 84 RVETRKVPVPPHRMTPLKATWPKIYPPLVEHLKLQVRMNIKNRSVELRTSKHTTDAGALQ 143
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTL 187
K D +K + + A+ +L+ DD+ + +I ++ + + R+ G +G T
Sbjct: 144 KGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLGGEHLGRAIGRIAGKDGKTK 203
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 204 FAIENASRTRVVLADQKIHILG 225
>gi|145592052|ref|YP_001154054.1| RNA-processing protein [Pyrobaculum arsenaticum DSM 13514]
gi|145283820|gb|ABP51402.1| KH, type 1, domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 184
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTV-FTTRKTWDPYIIIKARD 133
R ++P+ + L+ VK A + I+ ELD E + + T I+K R+
Sbjct: 17 RGTLFQPIDPKRLRAAREFVKMADGRYGIRVELD--EKELYIKLTPGPDAAVDAILKVRE 74
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
M K ++ +QA+ + D+ +I + + + + R+IG +G K+IE L
Sbjct: 75 MAKAVALGFAPDQAMALESDEYVLTVIDLKEVTDKPNHLRRIKGRIIGEDGRAKKTIENL 134
Query: 194 TNCYMLVQGQTVAALG 209
M++ VA LG
Sbjct: 135 AQVAMVIGDTYVAILG 150
>gi|21228114|ref|NP_634036.1| RNA-processing protein [Methanosarcina mazei Go1]
gi|452210580|ref|YP_007490694.1| RNA-binding protein [Methanosarcina mazei Tuc01]
gi|20906556|gb|AAM31708.1| putative RNA-binding protein [Methanosarcina mazei Go1]
gi|452100482|gb|AGF97422.1| RNA-binding protein [Methanosarcina mazei Tuc01]
Length = 182
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 123 WDPYIIIKARDMIKLLSRSVPYEQAVRVLQDD-ISCDIIKIGNLVQNKQRFVKRRQRLIG 181
DP + + IK + R E+A+ +L D+ + ++I + ++ + + + R+IG
Sbjct: 49 GDPLKEFRVLETIKAIGRGFSPEKALEILDDEMLMLEVIDLSDVATTPKELQRIKGRIIG 108
Query: 182 PNGCTLKSIELLTNCYMLVQGQTVAALG 209
NG T + E L N + V G+TV+ LG
Sbjct: 109 RNGRTRELAESLINVKISVYGKTVSVLG 136
>gi|154297104|ref|XP_001548980.1| hypothetical protein BC1G_12211 [Botryotinia fuckeliana B05.10]
gi|347840432|emb|CCD55004.1| similar to pre-rRNA-processing protein pno1 [Botryotinia
fuckeliana]
Length = 257
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 40 AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALE 99
+E+ + E F K DP ++ +R VP P + LK WP + L
Sbjct: 54 SEMHIDEEGRPRFAPAKNIDP--------ATRVETRKVPIPPHRMTPLKAAWPKIYPPLV 105
Query: 100 LHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISC 157
H ++ +++ ++ + T++ T D + K D +K S + A+ +L+ DD+
Sbjct: 106 EHLKLQVRMNIKNKAVELRTSKHTTDTGSLQKGEDFVKAFSLGFDVDDAIALLRLDDLYI 165
Query: 158 DIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+I ++ + + R R+ G +G T +IE + +++ + LG K +
Sbjct: 166 QTFEIKDVKTLQGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADSKIHILGGFKNI 223
>gi|190346710|gb|EDK38862.2| hypothetical protein PGUG_02960 [Meyerozyma guilliermondii ATCC
6260]
Length = 253
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR V P + LK WP + L H ++ +++ ++ + T + T DP +
Sbjct: 72 VKLESRKVQVPPHRMSPLKNTWPKIYPPLVEHLKLQVRMNLKTKTVELKTNKTTTDPGAL 131
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + ++ ++ + R R+ G +G T
Sbjct: 132 QKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEVKDVKTLTGDHLSRAIGRIAGKDGRT 191
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 192 KFAIENATRTRIVLADSKIHILG 214
>gi|146418531|ref|XP_001485231.1| hypothetical protein PGUG_02960 [Meyerozyma guilliermondii ATCC
6260]
Length = 253
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR V P + LK WP + L H ++ +++ ++ + T + T DP +
Sbjct: 72 VKLESRKVQVPPHRMSPLKNTWPKIYPPLVEHLKLQVRMNLKTKTVELKTNKTTTDPGAL 131
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + ++ ++ + R R+ G +G T
Sbjct: 132 QKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEVKDVKTLTGDHLSRAIGRIAGKDGRT 191
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 192 KFAIENATRTRIVLADSKIHILG 214
>gi|119872284|ref|YP_930291.1| RNA-processing protein [Pyrobaculum islandicum DSM 4184]
gi|119673692|gb|ABL87948.1| conserved hypothetical protein [Pyrobaculum islandicum DSM 4184]
Length = 176
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
++K R+MIK ++ EQA+ + D+ + +I + + + R+IG G
Sbjct: 59 VLKLREMIKAIALGFTPEQALELENDEYTLVVIDLKEYTDKPNHLRRIKGRIIGEEGRAR 118
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
++IE L +M+V VA LG
Sbjct: 119 RTIEYLAEVHMVVGDNYVAILG 140
>gi|313244425|emb|CBY15218.1| unnamed protein product [Oikopleura dioica]
Length = 197
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 83 KEEYLKECWPLVKNALELHFIKAELDVIEGSMT 115
+E+YLKE PLV+ L L+F+K ELD IEGS++
Sbjct: 162 REKYLKEVRPLVEKFLTLYFLKCELDSIEGSIS 194
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 20/66 (30%)
Query: 3 NAWSMKIPEFKKEDNPH------------------EYLKECWPLVKNALELHFIKAELDV 44
+ W K EFK E NP+ +YLKE PLV+ L L+F+K ELD
Sbjct: 131 DGW--KPEEFKPEHNPNGCLEESKFRFTLFPKYREKYLKEVRPLVEKFLTLYFLKCELDS 188
Query: 45 IEGSMT 50
IEGS++
Sbjct: 189 IEGSIS 194
>gi|451998673|gb|EMD91137.1| hypothetical protein COCHEDRAFT_1021837 [Cochliobolus
heterostrophus C5]
Length = 259
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
R VP P + LK WP + L H ++ ++ S+ + T+ T D + K D
Sbjct: 83 RKVPIPPHRMTPLKNSWPKIYPPLVEHLKLQVRMNTKSKSVELRTSSATTDTGALQKGED 142
Query: 134 MIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKSIE 191
+K + + A+ +L+ DD+ + +I ++ + R R+ G +G T +IE
Sbjct: 143 FVKAFTLGFDTDDAIALLRLDDLYIETFEIKDVKSLSGEHLSRAIGRIAGKDGKTKFAIE 202
Query: 192 LLTNCYMLVQGQTVAALGPHKGL 214
+ +++ Q + LG K +
Sbjct: 203 NASRTRIVLADQKIHILGGFKNI 225
>gi|451848849|gb|EMD62154.1| hypothetical protein COCSADRAFT_162658 [Cochliobolus sativus
ND90Pr]
Length = 259
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
R VP P + LK WP + L H ++ ++ S+ + T+ T D + K D
Sbjct: 83 RKVPIPPHRMTPLKNSWPKIYPPLVEHLKLQVRMNTKSKSVELRTSSATTDTGALQKGED 142
Query: 134 MIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKSIE 191
+K + + A+ +L+ DD+ + +I ++ + R R+ G +G T +IE
Sbjct: 143 FVKAFTLGFDTDDAIALLRLDDLYIETFEIKDVKSLSGEHLSRAIGRIAGKDGKTKFAIE 202
Query: 192 LLTNCYMLVQGQTVAALGPHKGL 214
+ +++ Q + LG K +
Sbjct: 203 NASRTRIVLADQKIHILGGFKNI 225
>gi|358378708|gb|EHK16389.1| hypothetical protein TRIVIDRAFT_75506 [Trichoderma virens Gv29-8]
Length = 257
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVI 110
F K DP M+++ +R VP P + LK+ WP + + H ++ +++
Sbjct: 66 FAPAKDIDP--------MMRVETRKVPIPPHRMTPLKQAWPSIYPPIVEHLKLQCRMNIA 117
Query: 111 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL---- 165
++ + T++ T D + K D +K + + A+ +L+ DD+ + +I ++
Sbjct: 118 RKTVELRTSKSTTDSGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTVH 177
Query: 166 VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
++ R + R+ G G T +IE + +++ + LG K +
Sbjct: 178 GDSQSRAIG---RIAGHQGKTKFAIENASRTRIVLADSKIHILGGFKNI 223
>gi|448737732|ref|ZP_21719767.1| RNA-processing protein [Halococcus thailandensis JCM 13552]
gi|445803288|gb|EMA53586.1| RNA-processing protein [Halococcus thailandensis JCM 13552]
Length = 182
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 87 LKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRS-VPYE 145
+ E +++ + ++ ++D GS+ V + DP +K D+++ + R P +
Sbjct: 15 IGEGGATMRDIEDRAGVRLDIDSETGSVGVESVE---DPVQGLKGPDIVRAIGRGFAPED 71
Query: 146 QAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTV 205
+ + + ++I I +N+ +++ RLIG NG T + + L+ +++ G TV
Sbjct: 72 ALTLLDDELMLLELIDIEAATRNETDLTRKKGRLIGENGRTRELMAELSGASVVIYGSTV 131
Query: 206 AALG 209
A+G
Sbjct: 132 GAIG 135
>gi|322697631|gb|EFY89409.1| hypothetical protein MAC_04595 [Metarhizium acridum CQMa 102]
Length = 258
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYI 127
+ ++ +R +P P + LK+ WP + L H ++ +++ ++ + T++ T D
Sbjct: 76 VTRVETRKIPVPPHRMTPLKQAWPSIYPPLVEHLKLQCRMNIKRKTVELRTSQNTTDSGA 135
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGC 185
+ K D +K + + AV +L+ DD+ + +I ++ + + + R+ G +G
Sbjct: 136 LQKGEDFVKAFTLGFDVDDAVALLRLDDLYIETFEIKDVRIMHGDSQARAIGRIAGKDGK 195
Query: 186 TLKSIELLTNCYMLVQGQTVAALGPHKGL 214
T +IE + +++ + LG K +
Sbjct: 196 TKFAIENASRTRIVLADSKIHILGGFKNI 224
>gi|322711582|gb|EFZ03155.1| KH domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 258
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYI 127
+ ++ +R +P P + LK+ WP + L H ++ +++ ++ + T++ T D
Sbjct: 76 VTRVETRKIPVPPHRMTPLKQAWPSIYPPLVEHLKLQCRMNIKRKTVELRTSQHTTDSGA 135
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGC 185
+ K D +K + + AV +L+ DD+ + +I ++ + + + R+ G +G
Sbjct: 136 LQKGEDFVKAFTLGFDVDDAVALLRLDDLYIETFEIKDVRIMHGDSQARAIGRIAGKDGK 195
Query: 186 TLKSIELLTNCYMLVQGQTVAALGPHKGL 214
T +IE + +++ + LG K +
Sbjct: 196 TKFAIENASRTRIVLADSKIHILGGFKNI 224
>gi|167042187|gb|ABZ06920.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_ANIW93H17]
gi|167044313|gb|ABZ08992.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG6B14]
Length = 189
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 103 IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKI 162
+K E+D G + VF+ + + KA ++I + R ++AVR+L+ + + +I +
Sbjct: 34 VKLEIDSENGEVKVFSD-IVDEKFQTFKALEIITAIGRGFSPQKAVRLLKGENTLHVINL 92
Query: 163 GNL-VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
++ ++ + + R+IG +G ++E L+N + V G+TV+ +G
Sbjct: 93 REFGAKSPEQMERIKGRIIGDSGKARVNVENLSNTNITVYGKTVSIIG 140
>gi|295672920|ref|XP_002797006.1| pre-rRNA-processing protein PNO1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282378|gb|EEH37944.1| pre-rRNA-processing protein PNO1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 264
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ ++ + T++ T D +
Sbjct: 84 RVETRKVPVPPHRMTPLKAFWPKIYPPLVEHLKLQVRMNIKNRTVELRTSKHTTDTGALQ 143
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTL 187
K D +K + + A+ +L+ DD+ + +I ++ + + R+ G +G T
Sbjct: 144 KGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLGGEHLGRAVGRIAGKDGKTK 203
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 204 FAIENASRTRVVLADQKIHILG 225
>gi|440634805|gb|ELR04724.1| RNA-binding protein PNO1 [Geomyces destructans 20631-21]
Length = 252
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+++ SR VP P + LK WP + L H ++ ++V ++ + T++ T D +
Sbjct: 71 VRIDSRKVPIPPHRMSPLKNEWPKIYPPLVEHLKLQVRMNVPRKAVELRTSKFTTDTGAL 130
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + +I ++ + + R R+ G +G T
Sbjct: 131 QKGEDFVKAFTLGFDTDDAIALLRLDDLYIETFEIKDVKTLQGEHLGRAIGRIAGKDGKT 190
Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGL 214
+IE + +++ + LG K +
Sbjct: 191 KFAIENASKTRVVLADSKIHILGGFKNI 218
>gi|170291063|ref|YP_001737879.1| putative RNA-processing protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175143|gb|ACB08196.1| KH type 1 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 137
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLV-QNKQRFVKRRQRLIGPNGCTL 187
+K +++ + R E A+++L+DD +++ I V + K + R R+IG G
Sbjct: 1 MKLESVVRAIGRGFNPEVAMKLLEDDYVLEVMDIRRFVGETKNALTRMRGRIIGEKGRAK 60
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
IE TN + V G TV+ +G
Sbjct: 61 TYIEERTNTKISVYGHTVSIIG 82
>gi|225680771|gb|EEH19055.1| pre-rRNA-processing protein pno1 [Paracoccidioides brasiliensis
Pb03]
gi|226292464|gb|EEH47884.1| pre-rRNA-processing protein PNO1 [Paracoccidioides brasiliensis
Pb18]
Length = 264
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ ++ + T++ T D +
Sbjct: 84 RVETRKVPVPPHRMTPLKAFWPKIYPPLVEHLKLQVRMNIKNRTVELRTSKHTTDTGALQ 143
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTL 187
K D +K + + A+ +L+ DD+ + +I ++ + + R+ G +G T
Sbjct: 144 KGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLGGEHLGRAVGRIAGKDGKTK 203
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 204 FAIENASRTRVVLADQKIHILG 225
>gi|435850456|ref|YP_007312042.1| KH domain protein [Methanomethylovorans hollandica DSM 15978]
gi|433661086|gb|AGB48512.1| KH domain protein [Methanomethylovorans hollandica DSM 15978]
Length = 175
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQDD--ISCDIIKIGNLVQNKQRFVKRRQRLIG 181
DP ++A D+I+ ++R E+A+ VL DD + + I + N Q ++ + R+IG
Sbjct: 49 DPIQSMRAPDVIQAIARGFNPEKAM-VLMDDEMMMLETIDLSNSAGTPQEMIRLKGRIIG 107
Query: 182 PNGCTLKSIELLTNCYMLVQGQTVAALG 209
G T + +E + + V G+TV+ LG
Sbjct: 108 KAGKTREIMESMIGVKISVYGKTVSVLG 135
>gi|359416868|ref|ZP_09209127.1| putative RNA-processing protein [Candidatus Haloredivivus sp. G17]
gi|358032770|gb|EHK01416.1| putative RNA-processing protein [Candidatus Haloredivivus sp. G17]
Length = 142
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 123 WDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
DP + + M+K + R E+A ++ ++ I + IG + + R+IG
Sbjct: 44 GDPLEEMTSHKMVKAIGRGFNPEKAFKLAEEGIDFHHLDIGKFADTSNSQERLKGRVIGR 103
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
+G + IE +T + V G+TV +G
Sbjct: 104 DGEAREHIEKMTQTEISVYGKTVGFIG 130
>gi|223478282|ref|YP_002582500.1| RNA-binding protein [Thermococcus sp. AM4]
gi|214033508|gb|EEB74335.1| RNA-binding protein, containing KH domain [Thermococcus sp. AM4]
Length = 232
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
K E+D G + + +T++T DP + KARD++ + R E+A R+ + + +I+ +
Sbjct: 69 KIEVDSETGEVFITSTKETKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVNLT 128
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
++V K + R R+IG G T + IE ++ + V G+TVA +G
Sbjct: 129 DIVVGNEKNALPRVRGRIIGRRGRTREIIEEMSGADVSVYGKTVAIIG 176
>gi|169601802|ref|XP_001794323.1| hypothetical protein SNOG_03777 [Phaeosphaeria nodorum SN15]
gi|121920833|sp|Q0UWT7.1|PNO1_PHANO RecName: Full=Pre-rRNA-processing protein PNO1
gi|111067862|gb|EAT88982.1| hypothetical protein SNOG_03777 [Phaeosphaeria nodorum SN15]
Length = 262
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARD 133
R VP P + LK WP + L H ++ +++ S+ + T++ T D + K D
Sbjct: 86 RKVPIPPHRMTPLKTAWPKIYPPLVEHLKLQVRMNIKTKSVELRTSKSTTDTGALQKGED 145
Query: 134 MIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKSIE 191
+K + + A+ +L+ DD+ + +I ++ + + R R+ G +G T +IE
Sbjct: 146 FVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLQGEHMGRAIGRIAGKDGKTKFAIE 205
Query: 192 LLTNCYMLVQGQTVAALGPHKGL 214
+ +++ + LG K +
Sbjct: 206 NASRTRVVLADSKIHILGGFKNI 228
>gi|332797842|ref|YP_004459342.1| KH type 1 domain-containing protein [Acidianus hospitalis W1]
gi|332695577|gb|AEE95044.1| KH type 1 domain protein [Acidianus hospitalis W1]
Length = 177
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 105 AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGN 164
AE+ E + T F + +PY +K +I+ + ++++++L DD D+I +
Sbjct: 26 AEITYDENTKT-FNVDSSQNPYDAMKVISVIRAIGLGFSVDESLKLLSDDYMLDVIDLKQ 84
Query: 165 LVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
V + ++R + R+IG NG K I+ T + + VA +G +
Sbjct: 85 SVGSNPETLRRIKGRIIGENGKAKKIIQEYTGVSISITDHFVAIIGIY 132
>gi|298675620|ref|YP_003727370.1| KH domain-containing protein [Methanohalobium evestigatum Z-7303]
gi|298288608|gb|ADI74574.1| KH domain protein [Methanohalobium evestigatum Z-7303]
Length = 185
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCD-IIKI 162
K E+D GS+ + DP ++A + I+ + R E+A+++L DD+ +I I
Sbjct: 32 KLEIDSDSGSVEITPGN---DPVSGMRASETIRAIGRGFNPEKAIQLLDDDMLMLDVIDI 88
Query: 163 GNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
++ + + + R+IG NG T + E L N ++ V G+TV+ +G
Sbjct: 89 SDVTSTSKELKRIKGRIIGKNGKTREIAESLINVHISVYGKTVSVIG 135
>gi|67539230|ref|XP_663389.1| hypothetical protein AN5785.2 [Aspergillus nidulans FGSC A4]
gi|74594876|sp|Q5B0Z5.1|PNO1_EMENI RecName: Full=Pre-rRNA-processing protein pno1
gi|40743688|gb|EAA62878.1| hypothetical protein AN5785.2 [Aspergillus nidulans FGSC A4]
gi|259484726|tpe|CBF81194.1| TPA: Pre-rRNA-processing protein pno1
[Source:UniProtKB/Swiss-Prot;Acc:Q5B0Z5] [Aspergillus
nidulans FGSC A4]
Length = 258
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 71 KLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIII 129
++ +R VP P + LK WP + L H ++ +++ ++ + T++ T D +
Sbjct: 77 RVETRKVPVPPHRMTPLKANWPKIYPPLVEHLKLQVRINIKSRAVELRTSKFTTDTGALQ 136
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQ--NKQRFVKRRQRLIGPNGCT 186
K D +K + + A+ +L+ DD+ +I ++ N + + R+ G +G T
Sbjct: 137 KGEDFVKAFTLGFDIDDAIALLRLDDLYIRSFEIRDVKASLNGEHLSRAIGRIAGKDGRT 196
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE + +++ Q + LG
Sbjct: 197 RHAIENASRTRIVIADQKIHILG 219
>gi|344234499|gb|EGV66367.1| eukaryotic type KH-domain (KH-domain type I) [Candida tenuis ATCC
10573]
Length = 260
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR VP P + LK WP + L H ++ +++ ++ + T + T D +
Sbjct: 79 VKLESRKVPVPPHRMTPLKNTWPKIYPPLVDHLKLQVRMNLKTRTVEMKTNKSTTDQGAL 138
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + ++ ++ + R R+ G +G T
Sbjct: 139 QKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEVKDVKTLTGDHLSRAIGRIAGKDGKT 198
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 199 KFAIENATRTRIVLADSKIHILG 221
>gi|424811562|ref|ZP_18236813.1| KH type 1 domain protein [Candidatus Nanosalinarum sp. J07AB56]
gi|339757288|gb|EGQ40869.1| KH type 1 domain protein [Candidatus Nanosalinarum sp. J07AB56]
Length = 168
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 44/84 (52%)
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+ A+ ++K + R ++A+++ + D + ++ +G+ + + + R+IG +G +
Sbjct: 51 MDAQRIVKAVGRGFGIDEAIKLARQDYTLHVMDVGDYASTQNSVERLKGRVIGRDGDAKR 110
Query: 189 SIELLTNCYMLVQGQTVAALGPHK 212
IE + M V G TV+ +G +
Sbjct: 111 HIEKEADVEMSVYGSTVSVIGEAR 134
>gi|171185315|ref|YP_001794234.1| putative RNA-processing protein [Pyrobaculum neutrophilum V24Sta]
gi|170934527|gb|ACB39788.1| KH type 1 domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 186
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTL 187
++K R+M K ++ EQA+ + DD + ++ + + + R+IG G
Sbjct: 71 VLKLREMAKAVALGFTPEQALLLENDDYALAVVDLKEYTDKPNHLRRIKGRIIGEEGRAR 130
Query: 188 KSIELLTNCYMLVQGQTVAALG 209
++IE L +M+V VA LG
Sbjct: 131 RTIENLAEVHMVVGDSYVAILG 152
>gi|378725414|gb|EHY51873.1| pre-rRNA-processing protein PNO1 [Exophiala dermatitidis
NIH/UT8656]
Length = 270
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+++ SR VP P + LK WP + L H ++ +++ ++ + T++ T D +
Sbjct: 89 VRIQSRKVPIPPHRMTPLKASWPKIYPPLVEHLKLQVRMNIKSKAVELRTSKFTTDSGAL 148
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + +I ++ + + R R+ G +G T
Sbjct: 149 QKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLQGDHLGRAIGRIAGKDGKT 208
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE + +++ + LG
Sbjct: 209 KFAIENTSKTRVVLADSKIHILG 231
>gi|359415974|ref|ZP_09208354.1| putative RNA-processing protein [Candidatus Haloredivivus sp. G17]
gi|358033692|gb|EHK02217.1| putative RNA-processing protein [Candidatus Haloredivivus sp. G17]
Length = 167
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 123 WDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
DP + + M+K + R E+A ++ ++ I + IG + + R+IG
Sbjct: 44 GDPLEEMTSHKMVKAIGRGFNPEKAFKLAEEGIDFHHLDIGKFADTSNSQERLKGRVIGR 103
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALG 209
+G + IE +T + V G+TV +G
Sbjct: 104 DGEAREHIEKMTQTEISVYGKTVGFIG 130
>gi|340520552|gb|EGR50788.1| predicted protein [Trichoderma reesei QM6a]
Length = 257
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 52 FTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVI 110
F K DP M ++ +R +P P + LK+ WP + + H ++ +++
Sbjct: 66 FAPSKDIDP--------MTRVETRKIPIPPHRMTPLKQAWPSIYPPIVEHLKLQCRMNIA 117
Query: 111 EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL---- 165
++ + T++ T D + K D +K + + A+ +L+ DD+ + +I ++
Sbjct: 118 RKTVELRTSKSTVDSGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTVH 177
Query: 166 VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
++ R + R+ G G T +IE + +++ + LG K +
Sbjct: 178 GDSQSRAIG---RIAGHQGKTKFAIENASRTRIVLADSKIHILGGFKNI 223
>gi|327401479|ref|YP_004342318.1| KH domain-containing protein [Archaeoglobus veneficus SNP6]
gi|327316987|gb|AEA47603.1| KH domain protein [Archaeoglobus veneficus SNP6]
Length = 180
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 113 SMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRF 172
S T T + D +KA+D+I ++ E A+++L++ +II + + V +
Sbjct: 39 SKTGIVTVEGEDAIGFLKAKDVINAIAHGFSPEVAMKLLEEFNVLEIIDLTDYVPDSA-L 97
Query: 173 VKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ + R+IG G K+IE + N + V G+TVA +G
Sbjct: 98 QRVKGRVIGKEGKVRKNIEDMLNVNVSVYGKTVAIIG 134
>gi|379003241|ref|YP_005258913.1| universal KH domain protein [Pyrobaculum oguniense TE7]
gi|375158694|gb|AFA38306.1| universal archaeal KH domain protein [Pyrobaculum oguniense TE7]
Length = 169
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTV-FTTRKTWDPYIIIKARD 133
R +P+ + L+ VK A + I+ ELD E + + T I+K R+
Sbjct: 2 RGTLLQPIDPKRLRAAREFVKMADGRYGIRVELD--EKELYIKLTPGPDAAVDAILKVRE 59
Query: 134 MIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELL 193
M K ++ +QA+ + D+ +I + + + + R+IG +G K+IE L
Sbjct: 60 MAKAVALGFAPDQAMALESDEYVLTVIDLKEVTDKPNHLRRIKGRIIGEDGRAKKTIENL 119
Query: 194 TNCYMLVQGQTVAALG 209
M++ VA LG
Sbjct: 120 AQVAMVIGDTYVAILG 135
>gi|88603706|ref|YP_503884.1| RNA-processing protein [Methanospirillum hungatei JF-1]
gi|88189168|gb|ABD42165.1| KH, type 1 [Methanospirillum hungatei JF-1]
Length = 179
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 124 DPYIIIKARDMIKLLSRSVPYEQAVRVLQD-DISCDIIKIGNLVQNKQRFVKRRQRLIGP 182
D I+A + +K ++R E+A +L+D D+ +II++ + + + R R+IG
Sbjct: 49 DADGFIQAVETVKAIARGFSPERAAILLEDPDLYLEIIELSEYAGSDSKIERIRGRIIGR 108
Query: 183 NGCTLKSIELLTNCYMLVQGQTVAALGP 210
+G + I+ +T + V G+TV +G
Sbjct: 109 DGRSRAQIQDMTATEISVYGKTVGIIGT 136
>gi|424811555|ref|ZP_18236806.1| KH type 1 domain protein [Candidatus Nanosalinarum sp. J07AB56]
gi|339757281|gb|EGQ40862.1| KH type 1 domain protein [Candidatus Nanosalinarum sp. J07AB56]
Length = 168
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 44/84 (52%)
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
+ A+ ++K + R ++A+++ + D + ++ +G+ + + + R+IG +G +
Sbjct: 51 MDAQRIVKAVGRGFGIDEAIKLARQDYTLHVMDVGDYASTQNSVERLKGRVIGRDGDAKR 110
Query: 189 SIELLTNCYMLVQGQTVAALGPHK 212
IE + M V G TV+ +G +
Sbjct: 111 HIEKEADVEMSVYGSTVSIIGEAR 134
>gi|229577991|ref|YP_002836389.1| RNA-processing protein [Sulfolobus islandicus Y.G.57.14]
gi|284996577|ref|YP_003418344.1| KH, type 1, domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|385772196|ref|YP_005644762.1| KH type 1 domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|228008705|gb|ACP44467.1| KH type 1 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|284444472|gb|ADB85974.1| KH, type 1, domain protein [Sulfolobus islandicus L.D.8.5]
gi|323476310|gb|ADX81548.1| KH type 1 domain protein [Sulfolobus islandicus HVE10/4]
Length = 186
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRL 179
K + Y +KA +I+ + + A R+L D+ D+I + L+ + ++R + R+
Sbjct: 42 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 101
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNC 235
IG G + I+ T + + G + +GP+ Q I K+IELL +
Sbjct: 102 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYD---QVQIAR-----KAIELLIDG 149
>gi|321458818|gb|EFX69880.1| hypothetical protein DAPPUDRAFT_113251 [Daphnia pulex]
Length = 206
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 76 SVP---YEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKAR 132
SVP Y PLKE ++K P+V++ LH ++ ++ + + T + T D + KA
Sbjct: 32 SVPAHRYSPLKENWMKLFTPIVEH---LH-LQIRFNLKNRQVELRTCKDTKDIANVQKAA 87
Query: 133 DMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQN-KQRFVKRR-QRLIGPNGCTLKS 189
D +K E A+ +++ DD+ D +I ++ + K + R RL G G T +
Sbjct: 88 DFVKAFICGFEVEDALALIRLDDLFVDSFEIKDVKSSLKGDHLNRAIGRLAGKGGRTKFT 147
Query: 190 IELLTNCYMLVQGQTVAALGPHKGL 214
IE +T +++ Q + LG ++ +
Sbjct: 148 IENVTKTRIVLADQKIHILGSYQNI 172
>gi|50426299|ref|XP_461746.1| DEHA2G04620p [Debaryomyces hansenii CBS767]
gi|74600822|sp|Q6BJ75.1|PNO1_DEBHA RecName: Full=Pre-rRNA-processing protein PNO1
gi|49657416|emb|CAG90203.1| DEHA2G04620p [Debaryomyces hansenii CBS767]
Length = 255
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR VP P + LK W + L H ++ +++ ++ + T + T D +
Sbjct: 74 VKLESRKVPVPPHRMTPLKNTWTKIYPPLVDHLKLQVRMNLKTKTIEMKTNKNTVDQGAL 133
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + ++ ++ N + R+ G +G T
Sbjct: 134 QKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEVKDVKTLNGDHLSRAIGRIAGKDGKT 193
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 194 KFAIENATRTRIVLADSKIHILG 216
>gi|229583203|ref|YP_002841602.1| putative RNA-processing protein [Sulfolobus islandicus Y.N.15.51]
gi|228013919|gb|ACP49680.1| KH type 1 domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 189
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRL 179
K + Y +KA +I+ + + A R+L D+ D+I + L+ + ++R + R+
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
IG G + I+ T + + G + +GP+
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPY 136
>gi|238618666|ref|YP_002913491.1| RNA-processing protein [Sulfolobus islandicus M.16.4]
gi|385774911|ref|YP_005647479.1| KH type 1 domain-containing protein [Sulfolobus islandicus REY15A]
gi|238379735|gb|ACR40823.1| KH type 1 domain protein [Sulfolobus islandicus M.16.4]
gi|323473659|gb|ADX84265.1| KH type 1 domain protein [Sulfolobus islandicus REY15A]
Length = 189
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRL 179
K + Y +KA +I+ + + A R+L D+ D+I + L+ + ++R + R+
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNC 235
IG G + I+ T + + G + +GP+ Q I K+IELL +
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYD---QVQIAR-----KAIELLIDG 152
>gi|227829222|ref|YP_002831001.1| RNA-processing protein [Sulfolobus islandicus L.S.2.15]
gi|227455669|gb|ACP34356.1| KH type 1 domain protein [Sulfolobus islandicus L.S.2.15]
Length = 189
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRL 179
K + Y +KA +I+ + + A R+L D+ D+I + L+ + ++R + R+
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTN 234
IG G + I+ T + + G + +GP+ Q I K+IELL +
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYD---QVQIAR-----KAIELLID 151
>gi|358400763|gb|EHK50089.1| hypothetical protein TRIATDRAFT_297421 [Trichoderma atroviride IMI
206040]
Length = 257
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 90/211 (42%), Gaps = 22/211 (10%)
Query: 15 EDNPHEYLKECWPLVKNALELHFIKAELD-----VIEGSMTVFTTRKTWDPYIIIKARDM 69
+DN E+L + + E+ +A+ D + E F K DP M
Sbjct: 24 QDNDQEFLLDAADVASADAEMMVPEAQDDGDNMAIDEEGRPRFAPSKDIDP--------M 75
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+ +R VP P + LK+ WP + + H ++ +++ ++ + T++ T D +
Sbjct: 76 ARTETRKVPIPPHRMTPLKQSWPSIYPPIVEHLKLQCRMNIKRKTVELRTSKFTTDSGAL 135
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNL----VQNKQRFVKRRQRLIGPN 183
K D +K + + A+ +L+ DD+ + +I ++ ++ R + R+ G
Sbjct: 136 QKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTVHGDSQSRAIG---RIAGHQ 192
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
G T +IE + +++ + LG K +
Sbjct: 193 GKTKFAIENASRTRIVLADSKIHILGGFKNI 223
>gi|380473436|emb|CCF46286.1| pre-rRNA-processing protein PNO1 [Colletotrichum higginsianum]
Length = 259
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 66 ARDM---IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRK 121
ARD+ ++ +R VP P + LK WP + L H ++ ++ + + T++
Sbjct: 70 ARDIDPVTRIETRKVPVPPHRFTPLKSAWPKIYPPLVEHLKLQVRMNPRRKQVELRTSKH 129
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRRQ--R 178
T + + K D +K + + A+ +L+ DD+ + +I ++ Q + R R
Sbjct: 130 TTEDGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIRDVKQVMGNEAQGRAIGR 189
Query: 179 LIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+ G +G T +IE + +++ + LG +K +
Sbjct: 190 IAGKDGKTKFAIENASKTRIVLADSKIHILGAYKNI 225
>gi|310793335|gb|EFQ28796.1| pre-rRNA-processing protein PNO1 [Glomerella graminicola M1.001]
Length = 259
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 66 ARDM---IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRK 121
ARD+ ++ +R VP P + LK WP + L H ++ ++ + + T++
Sbjct: 70 ARDIDPVTRIETRKVPVPPHRFTPLKSAWPKIYPPLVEHLKLQVRMNPRRKQVELRTSKH 129
Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRRQ--R 178
T + + K D +K + + A+ +L+ DD+ + +I ++ Q + R R
Sbjct: 130 TTEDGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIRDVKQVMGNEAQGRAIGR 189
Query: 179 LIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+ G +G T +IE + +++ + LG +K +
Sbjct: 190 IAGKDGKTKFAIENASKTRIVLADSKIHILGAYKNI 225
>gi|227826580|ref|YP_002828359.1| RNA-processing protein [Sulfolobus islandicus M.14.25]
gi|229583744|ref|YP_002842245.1| RNA-processing protein [Sulfolobus islandicus M.16.27]
gi|227458375|gb|ACP37061.1| KH type 1 domain protein [Sulfolobus islandicus M.14.25]
gi|228018793|gb|ACP54200.1| KH type 1 domain protein [Sulfolobus islandicus M.16.27]
Length = 186
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRL 179
K + Y KA +I+ + + A R+L D+ D+I + L+ + ++R + R+
Sbjct: 42 KGQNQYEAFKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 101
Query: 180 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 211
IG G + I+ T + + G + +GP+
Sbjct: 102 IGEGGKAKRIIQEYTGVDISIYGHHIGIIGPY 133
>gi|308321224|gb|ADO27764.1| RNA-binding protein pno1 [Ictalurus furcatus]
Length = 249
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 66 ARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 125
A +M K+ S Y PLKE +LK P+V+N L+L + ++ ++ + T ++T D
Sbjct: 69 ADEMRKIPEPSHRYTPLKENWLKIFTPIVEN-LQL---QVRFNLKTRNVEIKTCKETQDI 124
Query: 126 YIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPN 183
+ KA D +K E A+ +++ D++ + ++ ++ K + R R+ G
Sbjct: 125 GALTKAADFVKAFVLGFQVEDALALIRLDELFLETFEVTDVRPLKGDHLSRAVGRIAGKG 184
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
G T +IE +T +++ V LG + +
Sbjct: 185 GKTKFTIENVTKTRIVLADTKVHILGSFQNI 215
>gi|15920728|ref|NP_376397.1| putative RNA-processing protein [Sulfolobus tokodaii str. 7]
gi|15621511|dbj|BAB65506.1| hypothetical protein STK_05120 [Sulfolobus tokodaii str. 7]
Length = 181
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 93 LVKNAL----ELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAV 148
LVK+ L E+ K E D E + ++ K + Y +K +IK + ++A+
Sbjct: 12 LVKSILGRLEEISNTKIEFD--EKTKSIRVIPKDNNAYEAMKVVSVIKAIGVGFDVDEAM 69
Query: 149 RVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAAL 208
++++DD DII + + + + + R+IG G T K I+ T +++ V L
Sbjct: 70 KLMRDDYVLDIIDLKDSTNGPEDMKRIKGRIIGEKGKTKKIIQEYTGVNIIITDHYVGIL 129
Query: 209 GPHKGLLQSNIGPNGCTLKSIELL 232
G + Q++I ++IE+L
Sbjct: 130 GT---IEQADIAK-----RAIEML 145
>gi|440292397|gb|ELP85602.1| pre-rRNA-processing protein PNO1, putative [Entamoeba invadens IP1]
Length = 197
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 75 RSVPYEPLKEEYLKECWPLVKNALELHFIKAELDV-IEGSMTVFTTRKTWDPYI--IIKA 131
RSV P + +Y K WP + E + +L++ + + V + D I + K
Sbjct: 22 RSVRVPPFRFKYFKNNWPAI---YEPIVKQMKLNIRMNPNAHVIQLKTNPDSCIDAVQKT 78
Query: 132 RDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRRQ-RLIGPNGCTLKS 189
D I+ +S+ + A+ +L+ D++ D +I N+ + + +KR R+ G +G S
Sbjct: 79 CDFIEAISKGFEAKDAIALLKMDEVCVDSFEIDNVKRLQGDHLKRAMGRIAGKDGKIKFS 138
Query: 190 IELLTNCYMLVQGQTVAALG 209
IE T+ +++ GQ ++ +G
Sbjct: 139 IENATHTRIIMMGQKISVMG 158
>gi|429863363|gb|ELA37827.1| ankyrin repeat protein [Colletotrichum gloeosporioides Nara gc5]
Length = 918
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 62 IIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRK 121
I + AR + ++ S+P EPL+ ++L++ KN L ++K LDVIE + FTT K
Sbjct: 593 IDVFARSRTQCITESIPLEPLETQFLQQEISKTKNRTYL-WVKMVLDVIENVL-AFTTDK 650
Query: 122 TWDPYIII-KARDMI--KLLSRSVPYEQAVRVLQ 152
+ + K DM+ K+L+R E+A VLQ
Sbjct: 651 AAEILAGLPKGLDMLYEKILNRCQDIEKARNVLQ 684
>gi|448524900|ref|XP_003869037.1| nucleolar protein [Candida orthopsilosis Co 90-125]
gi|380353390|emb|CCG22900.1| nucleolar protein [Candida orthopsilosis]
Length = 252
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR VP P + LK W + L H ++ +++ ++ + T + T D +
Sbjct: 71 VKLESRKVPVPPHRMTPLKNVWTKIYPPLVDHLKLQVRMNLKTKTVELRTNKATTDAGAL 130
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D +K + + A+ +L+ DD+ + +I ++ + R R+ G +G T
Sbjct: 131 QKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLTGDHLSRAIGRIAGKDGKT 190
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 191 KFAIENATRTRIVLADSKIHILG 213
>gi|393795496|ref|ZP_10378860.1| RNA-processing protein [Candidatus Nitrosoarchaeum limnia BG20]
Length = 189
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 99 ELHFIKAELDVIEGSMTVFTTRKTWD--PYIIIKARDMIKLLSRSVPYEQAVRVLQDDIS 156
EL + ++D G + + + K D P+ KA ++I + R E A +L+ + +
Sbjct: 30 ELCRVTLDIDGQSGEVFITSNGKVEDIEPF---KAMEIIIAIGRGFSPENAFSLLKGENA 86
Query: 157 CDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+I + ++R + R+IG G K++E LT ++ V G+TV+ +G
Sbjct: 87 LHVIDLREFAGKSNANIERIKGRIIGEGGKARKNMENLTGTHISVYGKTVSIIG 140
>gi|16081522|ref|NP_393876.1| RNA-processing protein [Thermoplasma acidophilum DSM 1728]
gi|10639568|emb|CAC11540.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 189
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 131 ARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQ-NKQRFVKRRQRLIGPNGCTLKS 189
A+ +++ + R ++A+ + +D + II + + R + + R+IG G T
Sbjct: 65 AKSVVQAIGRGFNPDKAMLLFEDGMQLVIISLREFAKPGSSRIAQIKARVIGTGGKTRTI 124
Query: 190 IELLTNCYMLVQGQTVAALGPH 211
IE LT ++ V G TV+ +G +
Sbjct: 125 IEELTGSFISVYGDTVSIIGDY 146
>gi|329766436|ref|ZP_08257980.1| putative RNA-processing protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137035|gb|EGG41327.1| putative RNA-processing protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 189
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 99 ELHFIKAELDVIEGSMTVFTTRKTWD--PYIIIKARDMIKLLSRSVPYEQAVRVLQDDIS 156
EL + ++D G + + + K D P+ KA ++I + R E A +L+ + +
Sbjct: 30 ELCRVTLDIDGQSGEVFITSNGKVEDIEPF---KAMEIIIAIGRGFSPENAFSLLKGENT 86
Query: 157 CDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+I + ++R + R+IG G K++E LT ++ V G+TV+ +G
Sbjct: 87 LHVIDLREFAGKSNANIERIKGRIIGEGGKARKNMENLTGTHISVYGKTVSIIG 140
>gi|294495346|ref|YP_003541839.1| KH domain protein [Methanohalophilus mahii DSM 5219]
gi|292666345|gb|ADE36194.1| KH domain protein [Methanohalophilus mahii DSM 5219]
Length = 178
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 107 LDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDI-SCDIIKIGNL 165
+D GS+ V + DP ++A + IK + R E+ + +L DD+ ++I +
Sbjct: 35 IDSENGSVEVI---QGDDPVGTLRAIETIKAIGRGFNPEKTIPMLDDDLLMLEVIDLSKY 91
Query: 166 VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
+ + + R+IG G T + E L + + G+TV+ +G
Sbjct: 92 ASTNKEMTRLKGRIIGKGGKTREIAENLIGVKISIYGKTVSFIG 135
>gi|402582371|gb|EJW76317.1| RNA-binding protein pno1 [Wuchereria bancrofti]
Length = 235
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 65 KARDMIKLLSRSVP-----YEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTT 119
K R + + R VP Y PLKE + K P++K +LH ++ ++ ++ + +
Sbjct: 49 KHRGLTNVEVRKVPVPPHRYSPLKEHWTKIILPIIK---QLH-LQIRFNLKTRNVEIRVS 104
Query: 120 RKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-Q 177
+T DP + KA D ++ + AV +++ + + + +I ++ K + R
Sbjct: 105 NETEDPTHLQKAEDFVRAFVLGFDVDDAVALIRLNHLFLESFEINDVKPLKGEHLSRAIG 164
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
R+ G +G T +IE +T +++ + LG ++ +
Sbjct: 165 RIAGKDGRTKFTIENITKTRIVLANSKIHLLGAYQNI 201
>gi|393910994|gb|EFO22859.2| hypothetical protein LOAG_05624 [Loa loa]
Length = 269
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 75 RSVP-----YEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIII 129
R VP Y PLKE + K P+VK +LH ++ ++ ++ + T+ +T D +
Sbjct: 93 RKVPVPPHRYSPLKEHWTKIVLPVVK---QLH-LQIRFNLKSRNVEIRTSNETEDLTHLQ 148
Query: 130 KARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTL 187
KA D ++ + AV +++ D + + +I ++ K + R R+ G +G T
Sbjct: 149 KAEDFVRAFVLGFDVDDAVALIRLDHLFLESFEINDVKPLKGEHLSRAIGRIAGKDGRTK 208
Query: 188 KSIELLTNCYMLVQGQTVAALGPHKGL 214
+IE +T +++ + LG ++ +
Sbjct: 209 FTIENITKTRIVLANSKIHLLGAYQNI 235
>gi|348566605|ref|XP_003469092.1| PREDICTED: RNA-binding protein PNO1-like [Cavia porcellus]
Length = 248
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 74 SRSVP-----YEPLKEEYLKECWPLVKN-ALELHFIKAELDVIEGSMTVFTTRKTWDPYI 127
+R +P Y PLKE +LK P+V++ L++ F ++ ++ + T ++T D
Sbjct: 71 TRKIPVPANRYTPLKENWLKIFTPIVEHLGLQIRF-----NLKSRNVEIRTCKETKDASA 125
Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGC 185
+ KA D +K E A+ +++ DD+ + +I ++ K + R R+ G G
Sbjct: 126 LTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGK 185
Query: 186 TLKSIELLTNCYMLVQGQTVAALGPHKGL 214
T +IE +T +++ V LG + +
Sbjct: 186 TKFTIENVTRTRIVLADVKVHILGSFQNI 214
>gi|318055774|ref|NP_001187556.1| RNA-binding protein PNO1 [Ictalurus punctatus]
gi|308323349|gb|ADO28811.1| RNA-binding protein pno1 [Ictalurus punctatus]
Length = 249
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 66 ARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 125
A +M K+ S Y PLKE +LK P+V+N L+L + ++ ++ + T ++T D
Sbjct: 69 ADEMRKIPVPSHRYTPLKENWLKIFTPIVEN-LQL---QVRFNLKTRNVEIKTCKETQDI 124
Query: 126 YIIIKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPN 183
+ KA D +K E A+ +++ D++ + ++ ++ K + R R+ G
Sbjct: 125 GALTKAADFVKAFVLGFQVEDALALIRLDELFLETFEVTDVKPLKGDHLSRAVGRIAGKG 184
Query: 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
G T +IE +T +++ V LG + +
Sbjct: 185 GKTKFTIENVTKTRIVLADTKVHILGSFQNI 215
>gi|70606751|ref|YP_255621.1| putative RNA-processing protein [Sulfolobus acidocaldarius DSM 639]
gi|449066975|ref|YP_007434057.1| putative RNA-processing protein [Sulfolobus acidocaldarius N8]
gi|449069247|ref|YP_007436328.1| putative RNA-processing protein [Sulfolobus acidocaldarius Ron12/I]
gi|68567399|gb|AAY80328.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
gi|449035483|gb|AGE70909.1| putative RNA-processing protein [Sulfolobus acidocaldarius N8]
gi|449037755|gb|AGE73180.1| putative RNA-processing protein [Sulfolobus acidocaldarius Ron12/I]
Length = 178
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
K + Y +K +I L A+R++ DD +II + + + + R+I
Sbjct: 42 KDNNSYNAMKVISVINALGFGFEPNDAMRLMSDDYGLEIINLKEFTNSVNSLRRIKGRVI 101
Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELL 232
G G T ++IE T +LV+ + LG NI ++IELL
Sbjct: 102 GEKGKTKRTIEEYTGVIVLVKDHEIGLLG--------NIEQLSIAKRAIELL 145
>gi|126276263|ref|XP_001387219.1| Predicted RNA-binding protein Pno1p interacting with Nob1p and
involved in 26S proteasome assembly [Scheffersomyces
stipitis CBS 6054]
gi|126213088|gb|EAZ63196.1| Predicted RNA-binding protein Pno1p interacting with Nob1p and
involved in 26S proteasome assembly [Scheffersomyces
stipitis CBS 6054]
Length = 257
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 70 IKLLSRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYII 128
+KL SR V P + LK WP + L H ++ +++ ++ + T + T D +
Sbjct: 76 VKLESRKVAVPPHRMTPLKNVWPKIYPPLVDHLKLQVRMNLKTKTVELKTNKSTTDVGAL 135
Query: 129 IKARDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCT 186
K D IK + + A+ +L+ DD+ + +I ++ + R R+ G +G T
Sbjct: 136 QKGADFIKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLTGDHLSRAIGRIAGKDGKT 195
Query: 187 LKSIELLTNCYMLVQGQTVAALG 209
+IE T +++ + LG
Sbjct: 196 KFAIENATRTRIVLADSKIHILG 218
>gi|429847995|gb|ELA23531.1| pre-rRNA-processing protein pno1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 259
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 80/180 (44%), Gaps = 12/180 (6%)
Query: 39 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNAL 98
++E+ V E + F + DP + ++ +R VP P + LK WP + L
Sbjct: 54 ESEMVVDEENRPRFAPARDIDP--------VTRIETRKVPVPPHRFTPLKSAWPKIYPPL 105
Query: 99 ELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ-DDIS 156
H ++ ++ + + T++ + + + K D +K + + A+ +L+ DD+
Sbjct: 106 VEHLKLQVRMNPRRKQVELRTSKHSTEDGALQKGEDFVKAFTLGFDVDDAIALLRLDDLY 165
Query: 157 CDIIKIGNLVQNKQRFVKRRQ--RLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 214
+ +I ++ Q + R R+ G +G T +IE + +++ + LG +K +
Sbjct: 166 IETFEIRDVKQVMGNEAQGRAIGRIAGKDGKTKFAIENASKTRIVLADSKIHILGAYKNI 225
>gi|338714231|ref|XP_001492398.2| PREDICTED: RNA-binding protein PNO1-like [Equus caballus]
Length = 252
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 76 SVP---YEPLKEEYLKECWPLVKN-ALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKA 131
SVP Y PLKE +LK P+V++ L++ F ++ ++ + T ++T D + KA
Sbjct: 79 SVPANRYTPLKENWLKIFTPIVEHLGLQIRF-----NLKSRNVEIRTCKETKDVSALTKA 133
Query: 132 RDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKS 189
D +K E A+ +++ DD+ + +I ++ K + R R+ G G T +
Sbjct: 134 ADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFT 193
Query: 190 IELLTNCYMLVQGQTVAALGPHKGL 214
IE +T +++ V LG + +
Sbjct: 194 IENVTRTRIVLADVKVHILGSFQNI 218
>gi|349604382|gb|AEP99950.1| RNA-binding protein PNO1-like protein, partial [Equus caballus]
Length = 183
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 76 SVP---YEPLKEEYLKECWPLVKN-ALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKA 131
SVP Y PLKE +LK P+V++ L++ F ++ ++ + T ++T D + KA
Sbjct: 10 SVPANRYTPLKENWLKIFTPIVEHLGLQIRF-----NLKSRNVEIRTCKETKDVSALTKA 64
Query: 132 RDMIKLLSRSVPYEQAVRVLQ-DDISCDIIKIGNLVQNKQRFVKRR-QRLIGPNGCTLKS 189
D +K E A+ +++ DD+ + +I ++ K + R R+ G G T +
Sbjct: 65 ADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFT 124
Query: 190 IELLTNCYMLVQGQTVAALGPHKGL 214
IE +T +++ V LG + +
Sbjct: 125 IENVTRTRIVLADVKVHILGSFQNI 149
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,046,812,661
Number of Sequences: 23463169
Number of extensions: 196594852
Number of successful extensions: 537595
Number of sequences better than 100.0: 761
Number of HSP's better than 100.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 535425
Number of HSP's gapped (non-prelim): 1767
length of query: 334
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 191
effective length of database: 9,003,962,200
effective search space: 1719756780200
effective search space used: 1719756780200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)