Query psy15011
Match_columns 334
No_of_seqs 269 out of 590
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 18:09:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tua_A Hypothetical protein AP 100.0 5E-48 1.7E-52 347.9 13.3 168 76-283 7-178 (191)
2 2e3u_A PH-DIM2P, hypothetical 100.0 8.2E-38 2.8E-42 286.0 13.0 169 74-282 35-208 (219)
3 2anr_A Neuro-oncological ventr 98.9 3.9E-10 1.3E-14 97.2 2.9 95 175-269 16-178 (178)
4 2jvz_A KH type-splicing, FAR u 98.9 7E-10 2.4E-14 93.7 3.5 92 175-266 12-160 (164)
5 2jzx_A Poly(RC)-binding protei 98.8 6.3E-10 2.1E-14 94.2 1.2 91 175-265 15-158 (160)
6 3krm_A Insulin-like growth fac 98.8 1.5E-09 5.1E-14 92.1 3.0 91 176-266 14-156 (163)
7 1j4w_A FUSE binding protein; s 98.7 6.3E-09 2.2E-13 89.5 3.5 90 175-264 13-174 (174)
8 1tua_A Hypothetical protein AP 98.5 5.7E-07 1.9E-11 80.9 11.7 127 17-151 13-170 (191)
9 1dtj_A RNA-binding neurooncolo 98.1 2.3E-06 7.7E-11 64.7 3.9 62 175-265 13-74 (76)
10 1ec6_A RNA-binding protein NOV 98.0 4E-06 1.4E-10 65.3 3.4 62 175-265 13-74 (87)
11 1k1g_A SF1-BO isoform; splicin 97.9 4.6E-06 1.6E-10 70.8 3.5 78 175-268 23-101 (131)
12 2opv_A KHSRP protein; KH domai 97.9 5.3E-06 1.8E-10 64.5 3.5 61 175-265 24-84 (85)
13 2bl5_A MGC83862 protein, quaki 97.9 1.3E-05 4.4E-10 69.2 6.1 102 175-293 18-129 (140)
14 2jvz_A KH type-splicing, FAR u 97.9 1.1E-05 3.8E-10 67.9 5.5 121 78-215 7-148 (164)
15 1x4n_A FAR upstream element bi 97.9 6.5E-06 2.2E-10 65.0 3.8 60 175-266 25-84 (92)
16 2ctm_A Vigilin; K homology typ 97.9 6.7E-06 2.3E-10 65.8 3.8 57 176-265 28-84 (95)
17 2p2r_A Poly(RC)-binding protei 97.9 7.8E-06 2.7E-10 62.0 3.2 59 175-265 15-73 (76)
18 2hh2_A KH-type splicing regula 97.8 1.8E-05 6E-10 64.4 5.3 63 175-266 17-79 (107)
19 1zzk_A Heterogeneous nuclear r 97.8 1.2E-05 4.2E-10 62.0 4.0 59 175-265 17-75 (82)
20 1vig_A Vigilin; RNA-binding pr 97.8 1.4E-05 4.8E-10 60.4 4.1 55 176-264 16-70 (71)
21 1x4m_A FAR upstream element bi 97.8 2.8E-05 9.7E-10 61.6 5.1 62 175-266 25-86 (94)
22 2yqr_A KIAA0907 protein; struc 97.7 8.4E-06 2.9E-10 68.4 2.0 74 175-270 29-103 (119)
23 1we8_A Tudor and KH domain con 97.7 1.5E-05 5.2E-10 64.2 3.0 62 175-266 25-86 (104)
24 2ctk_A Vigilin; K homology typ 97.7 1.4E-05 4.7E-10 64.9 2.8 59 176-268 28-86 (104)
25 1j5k_A Heterogeneous nuclear r 97.7 1.4E-05 4.7E-10 62.7 2.7 59 175-265 24-82 (89)
26 1wvn_A Poly(RC)-binding protei 97.7 2.3E-05 7.7E-10 60.4 3.4 60 175-266 16-75 (82)
27 2e3u_A PH-DIM2P, hypothetical 97.7 0.00042 1.4E-08 63.3 12.3 127 19-152 45-202 (219)
28 1j4w_A FUSE binding protein; s 97.6 9.4E-05 3.2E-09 63.4 6.7 129 77-215 7-164 (174)
29 2hh3_A KH-type splicing regula 97.6 3.5E-05 1.2E-09 62.9 3.6 59 176-266 22-80 (106)
30 2qnd_A FMR1 protein; KH domain 97.6 1.2E-05 4E-10 68.5 0.2 93 174-266 13-142 (144)
31 2anr_A Neuro-oncological ventr 97.6 0.00013 4.5E-09 62.5 6.8 126 77-215 10-163 (178)
32 2axy_A Poly(RC)-binding protei 97.5 4.5E-05 1.5E-09 57.8 3.3 57 175-265 15-71 (73)
33 2ctl_A Vigilin; K homology typ 97.5 5.5E-05 1.9E-09 60.6 3.9 59 176-265 28-86 (97)
34 2cte_A Vigilin; K homology typ 97.4 4.9E-05 1.7E-09 60.3 2.3 57 175-265 27-83 (94)
35 2dgr_A Ring finger and KH doma 97.3 0.00026 9E-09 55.4 4.8 56 175-265 20-75 (83)
36 3krm_A Insulin-like growth fac 97.1 0.0005 1.7E-08 58.0 5.4 117 78-215 8-144 (163)
37 2ctj_A Vigilin; K homology typ 96.6 0.0016 5.6E-08 52.1 3.8 56 176-265 28-84 (95)
38 2cpq_A FragIle X mental retard 95.9 0.0026 8.7E-08 51.3 1.6 49 176-263 26-78 (91)
39 2jzx_A Poly(RC)-binding protei 95.7 0.003 1E-07 53.0 1.3 52 214-265 15-71 (160)
40 2qnd_A FMR1 protein; KH domain 95.3 0.016 5.3E-07 49.1 4.4 41 175-215 77-130 (144)
41 2ctf_A Vigilin; K homology typ 95.1 0.015 5.2E-07 46.9 3.6 50 177-265 39-91 (102)
42 3u1k_A Polyribonucleotide nucl 94.3 0.013 4.6E-07 60.8 1.7 50 176-264 578-629 (630)
43 3n89_A Defective in GERM LINE 90.8 0.1 3.4E-06 51.4 2.5 61 176-263 41-103 (376)
44 3n89_A Defective in GERM LINE 89.1 0.24 8.4E-06 48.7 3.6 61 176-264 197-259 (376)
45 4aid_A Polyribonucleotide nucl 79.9 0.33 1.1E-05 51.3 -0.2 27 176-202 581-607 (726)
46 3v69_A Protein filia; RNA-bind 75.5 2.5 8.5E-05 36.6 4.0 70 176-283 67-136 (140)
47 2cpq_A FragIle X mental retard 71.3 3.7 0.00013 32.8 3.8 61 79-143 21-83 (91)
48 2bl5_A MGC83862 protein, quaki 61.6 1 3.6E-05 38.6 -1.3 31 212-242 16-46 (140)
49 2opv_A KHSRP protein; KH domai 60.8 17 0.00058 27.4 5.6 57 77-139 18-83 (85)
50 2pt7_G HP1451, hypothetical pr 60.5 2 6.7E-05 37.3 0.2 24 176-199 44-67 (152)
51 2cte_A Vigilin; K homology typ 59.8 8.3 0.00028 29.9 3.7 59 76-139 20-82 (94)
52 3u1k_A Polyribonucleotide nucl 54.8 11 0.00039 39.1 4.8 58 77-139 571-629 (630)
53 1k1g_A SF1-BO isoform; splicin 53.9 1.7 5.8E-05 36.5 -1.2 30 213-242 22-51 (131)
54 1dtj_A RNA-binding neurooncolo 53.0 2.2 7.5E-05 31.4 -0.6 31 212-242 11-41 (76)
55 3gku_A Probable RNA-binding pr 52.2 2.8 9.7E-05 38.4 -0.1 79 176-292 103-195 (225)
56 2yqr_A KIAA0907 protein; struc 46.1 39 0.0013 27.8 5.9 44 93-140 40-98 (119)
57 1we8_A Tudor and KH domain con 44.0 19 0.00064 28.3 3.5 59 77-140 19-85 (104)
58 1vig_A Vigilin; RNA-binding pr 42.2 5.6 0.00019 29.4 0.1 29 214-242 15-43 (71)
59 2ctm_A Vigilin; K homology typ 37.9 6 0.00021 31.0 -0.3 31 212-242 25-55 (95)
60 2hh2_A KH-type splicing regula 37.4 11 0.00037 30.0 1.1 32 212-243 15-46 (107)
61 1x4m_A FAR upstream element bi 36.1 7.6 0.00026 30.1 0.0 31 212-242 23-53 (94)
62 1zzk_A Heterogeneous nuclear r 35.4 7.8 0.00027 29.2 -0.0 31 212-242 15-45 (82)
63 1ec6_A RNA-binding protein NOV 33.3 82 0.0028 23.6 5.5 59 77-140 7-74 (87)
64 2dgr_A Ring finger and KH doma 31.9 10 0.00036 29.1 0.2 29 213-241 19-47 (83)
65 2cxc_A NUSA; transcription ter 30.9 12 0.00039 32.1 0.3 65 176-240 47-139 (144)
66 2ctk_A Vigilin; K homology typ 30.7 52 0.0018 26.0 4.1 63 76-143 20-86 (104)
67 2hh3_A KH-type splicing regula 30.3 98 0.0033 24.6 5.7 58 77-139 15-78 (106)
68 1wvn_A Poly(RC)-binding protei 29.6 65 0.0022 23.9 4.3 59 77-140 10-74 (82)
69 2p2r_A Poly(RC)-binding protei 29.3 72 0.0025 23.2 4.4 58 77-139 9-72 (76)
70 2ctj_A Vigilin; K homology typ 27.9 86 0.003 24.4 4.9 57 77-139 21-83 (95)
71 1j5k_A Heterogeneous nuclear r 27.7 64 0.0022 24.4 4.0 58 77-139 18-81 (89)
72 1x4n_A FAR upstream element bi 26.7 78 0.0027 24.1 4.4 58 77-139 19-82 (92)
73 2ooa_A E3 ubiquitin-protein li 24.0 56 0.0019 23.9 2.8 21 132-152 13-33 (52)
74 1v5t_A 8430435I17RIK protein; 22.5 20 0.00068 27.1 0.2 13 240-252 73-85 (90)
75 3shq_A UBLCP1; phosphatase, hy 22.2 41 0.0014 31.8 2.4 53 184-252 28-82 (320)
76 2ctl_A Vigilin; K homology typ 20.5 1.6E+02 0.0053 22.8 5.0 59 76-139 20-85 (97)
77 3iwl_A Copper transport protei 20.3 2.1E+02 0.0071 19.3 5.5 30 89-118 14-44 (68)
No 1
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=100.00 E-value=5e-48 Score=347.87 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=162.5
Q ss_pred cccCchhhHhHHhhhhhhHHHHHh-hcceeEEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHHHHHHhhhcc
Q psy15011 76 SVPYEPLKEEYLKECWPLVKNALE-LHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDD 154 (334)
Q Consensus 76 sVpvP~~Re~yLKe~W~~I~~~le-~~~l~i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e~AlkLL~DD 154 (334)
.|+||++|..||+..|..+++.|+ +++++++||+.+++|+|+|+++|+||++++||+|||+||+|||+++||++||+||
T Consensus 7 ~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~Dd 86 (191)
T 1tua_A 7 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEED 86 (191)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGSTT
T ss_pred EEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccCc
Confidence 578999999999999999999985 6999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEecccc-ccCcchhccccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhc
Q psy15011 155 ISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT 233 (334)
Q Consensus 155 i~~dIIdIk~~-v~n~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~ 233 (334)
++||+|||+++ +.|++||+|++|||||++|+|+++||++|||||+
T Consensus 87 ~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~---------------------------------- 132 (191)
T 1tua_A 87 QILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYIN---------------------------------- 132 (191)
T ss_dssp EEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEE----------------------------------
T ss_pred ceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEE----------------------------------
Confidence 99999999999 7899999999999999999999999999999999
Q ss_pred cceeeeeccEEEEecCCccHHHHHHHHHHHhcC-CC-chhHHHHHHHHHhhh
Q psy15011 234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKN-IH-PIYNIKALMIKRELA 283 (334)
Q Consensus 234 ~~~~~V~g~tV~iiG~~~~l~~ar~av~~li~g-~h-piy~ik~l~~kr~l~ 283 (334)
|||+||+|+|+|+++++||+||++||.| +| |||++++.+ ++||.
T Consensus 133 -----v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~~vy~~~~~~-~~~~k 178 (191)
T 1tua_A 133 -----VGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERI-MREIK 178 (191)
T ss_dssp -----ECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHH
T ss_pred -----EcCCEEEEEeChHHHHHHHHHHHHHHcCCCchhHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999 69 899999998 78874
No 2
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=100.00 E-value=8.2e-38 Score=285.98 Aligned_cols=169 Identities=24% Similarity=0.330 Sum_probs=153.6
Q ss_pred hccccCchhhHhHHhhhhhhHHHHH-hhcceeEEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHHHHHHhhh
Q psy15011 74 SRSVPYEPLKEEYLKECWPLVKNAL-ELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQ 152 (334)
Q Consensus 74 sRsVpvP~~Re~yLKe~W~~I~~~l-e~~~l~i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e~AlkLL~ 152 (334)
.+.+.||++|..+|...|..+.+.| +++|++|++|+.+|+|+|++++.|+||.+++||+|+|+||+|||+||+|..||+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll~ 114 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLN 114 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGGS
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceecc
Confidence 4578999999999999999999888 679999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeEEecccc-c-cCcchhccccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhh
Q psy15011 153 DDISCDIIKIGNL-V-QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIE 230 (334)
Q Consensus 153 DDi~~dIIdIk~~-v-~n~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e 230 (334)
||++|++++|+++ + .+++|+.|++|||||++|+|+++||++|||+|+
T Consensus 115 dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~------------------------------- 163 (219)
T 2e3u_A 115 EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVS------------------------------- 163 (219)
T ss_dssp TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEE-------------------------------
T ss_pred CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEE-------------------------------
Confidence 9999999999998 4 577899999999999999999999999999999
Q ss_pred hhccceeeeeccEEEEecCCccHHHHHHHHHHHhcC-CCc-hhHHHHHHHHHhh
Q psy15011 231 LLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKN-IHP-IYNIKALMIKREL 282 (334)
Q Consensus 231 ~~~~~~~~V~g~tV~iiG~~~~l~~ar~av~~li~g-~hp-iy~ik~l~~kr~l 282 (334)
|+|+||+|+|++++++.||++|++||.| +|| +|+..+-. +++|
T Consensus 164 --------v~~~~v~i~G~~~~i~~A~~~i~~li~g~~~~~vy~~l~~~-~~~~ 208 (219)
T 2e3u_A 164 --------VYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERR-KKDL 208 (219)
T ss_dssp --------EETTEEEEEECHHHHHHHHHHHHHHHTTCCHHHHHHHHHHC-----
T ss_pred --------ECCeEEEEEeCHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999 799 99998765 3444
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.91 E-value=3.9e-10 Score=97.22 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=82.9
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecce----------eeeeecCCcccc-----------------------------
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQ----------TVAALGPHKGLL----------------------------- 215 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gk----------tV~IIG~~~~ik----------------------------- 215 (334)
..|+|||++|++.+.|+..|||+|.|.+. .|.|.|..+++.
T Consensus 16 ~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~ 95 (178)
T 2anr_A 16 AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQ 95 (178)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-------------
T ss_pred HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCccccCCcccccCCc
Confidence 47899999999999999999999999753 688888653221
Q ss_pred --------------------ccccCCCCccchhhhhhccceeeeecc---------EEEEecCCccHHHHHHHHHHHhcC
Q psy15011 216 --------------------QSNIGPNGCTLKSIELLTNCYMLVQGQ---------TVAALGPHKGLLQVRRIVEDTMKN 266 (334)
Q Consensus 216 --------------------~~~~g~~g~~~~~~e~~~~~~~~V~g~---------tV~iiG~~~~l~~ar~av~~li~g 266 (334)
+.+||.+|++.+.|.+.||+.|.|... +|.|.|+.+++..|+..|.+++..
T Consensus 96 ~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 96 TTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp ----CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999865 899999999999999999999876
Q ss_pred CCc
Q psy15011 267 IHP 269 (334)
Q Consensus 267 ~hp 269 (334)
.+|
T Consensus 176 ~p~ 178 (178)
T 2anr_A 176 DPQ 178 (178)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.88 E-value=7e-10 Score=93.70 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=80.6
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecc---------eeeeeecCCc---------------------------------
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQG---------QTVAALGPHK--------------------------------- 212 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~g---------ktV~IIG~~~--------------------------------- 212 (334)
..|+|||++|++.+.|+..|||+|.|.. ..|.|.|+.+
T Consensus 12 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~ 91 (164)
T 2jvz_A 12 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGG 91 (164)
T ss_dssp CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCSSCSSCTTSCSS
T ss_pred heeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCCCccccCCCCCc
Confidence 3689999999999999999999998852 3788888541
Q ss_pred --------cccccccCCCCccchhhhhhccceeeee-------ccEEEEecCCccHHHHHHHHHHHhcC
Q psy15011 213 --------GLLQSNIGPNGCTLKSIELLTNCYMLVQ-------GQTVAALGPHKGLLQVRRIVEDTMKN 266 (334)
Q Consensus 213 --------~ik~~~~g~~g~~~~~~e~~~~~~~~V~-------g~tV~iiG~~~~l~~ar~av~~li~g 266 (334)
...+++||.+|++.+.|++.|||.|.|. ..+|.|.|+.+++..|++.|++++..
T Consensus 92 ~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 92 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp SBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 2347889999999999999999999998 46999999999999999999998753
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=6.3e-10 Score=94.22 Aligned_cols=91 Identities=20% Similarity=0.334 Sum_probs=80.6
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecce-----eeeeecCCcc------------------------------------
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQ-----TVAALGPHKG------------------------------------ 213 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gk-----tV~IIG~~~~------------------------------------ 213 (334)
..|+|||++|++.+.|+..|||+|.|.+. .|.|.|+.++
T Consensus 15 ~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~ 94 (160)
T 2jzx_A 15 EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLV 94 (160)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEE
T ss_pred heeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEE
Confidence 46899999999999999999999999876 7888887422
Q ss_pred ----ccccccCCCCccchhhhhhccceeeeec--------cEEEEecCCccHHHHHHHHHHHhc
Q psy15011 214 ----LLQSNIGPNGCTLKSIELLTNCYMLVQG--------QTVAALGPHKGLLQVRRIVEDTMK 265 (334)
Q Consensus 214 ----ik~~~~g~~g~~~~~~e~~~~~~~~V~g--------~tV~iiG~~~~l~~ar~av~~li~ 265 (334)
..+++||.+|+..+.|++.|||.|.|.+ .+|.|.|+.+++..|+..|++++.
T Consensus 95 vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 95 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVML 158 (160)
T ss_dssp EEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 2247899999999999999999999985 799999999999999999988864
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.81 E-value=1.5e-09 Score=92.14 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=81.3
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecce--------eeeeecCC-----------------------------------c
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQ--------TVAALGPH-----------------------------------K 212 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gk--------tV~IIG~~-----------------------------------~ 212 (334)
.|.|||++|++.+.|+..|||+|.|.+. .|.|.|+. .
T Consensus 14 ~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~~~~~~~~~~i~vp~ 93 (163)
T 3krm_A 14 VGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPA 93 (163)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCSSCCCCEEEEEEEET
T ss_pred cceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccccccCCceEEEEEcCh
Confidence 5899999999999999999999999774 48888765 2
Q ss_pred cccccccCCCCccchhhhhhccceeeeecc---------EEEEecCCccHHHHHHHHHHHhcC
Q psy15011 213 GLLQSNIGPNGCTLKSIELLTNCYMLVQGQ---------TVAALGPHKGLLQVRRIVEDTMKN 266 (334)
Q Consensus 213 ~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~---------tV~iiG~~~~l~~ar~av~~li~g 266 (334)
..-+++||.+|++.+.|.+.|||.|.|.+. +|.|.|+.+++..|++.|.+++..
T Consensus 94 ~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 94 SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999877 899999999999999999999864
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.70 E-value=6.3e-09 Score=89.49 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=78.6
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecc-------eeeeeecCCc-----------------------------------
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQG-------QTVAALGPHK----------------------------------- 212 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~g-------ktV~IIG~~~----------------------------------- 212 (334)
..|+|||++|++.+.|+..|||+|.|.+ ..|.|.|+.+
T Consensus 13 ~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~ 92 (174)
T 1j4w_A 13 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQ 92 (174)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC------------------
T ss_pred heeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCC
Confidence 4689999999999999999999999974 3688888742
Q ss_pred --------------------cccccccCCCCccchhhhhhccceeeeec----------cEEEEecCCccHHHHHHHHHH
Q psy15011 213 --------------------GLLQSNIGPNGCTLKSIELLTNCYMLVQG----------QTVAALGPHKGLLQVRRIVED 262 (334)
Q Consensus 213 --------------------~ik~~~~g~~g~~~~~~e~~~~~~~~V~g----------~tV~iiG~~~~l~~ar~av~~ 262 (334)
+..+++||.+|++.+.|++.||+.|.|.+ .+|.|.|+.+++..|+..|.+
T Consensus 93 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 172 (174)
T 1j4w_A 93 GNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEE 172 (174)
T ss_dssp -----------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHH
T ss_pred CccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHH
Confidence 22356899999999999999999999987 589999999999999999988
Q ss_pred Hh
Q psy15011 263 TM 264 (334)
Q Consensus 263 li 264 (334)
++
T Consensus 173 ~i 174 (174)
T 1j4w_A 173 KI 174 (174)
T ss_dssp HC
T ss_pred hC
Confidence 75
No 8
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.54 E-value=5.7e-07 Score=80.95 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=94.2
Q ss_pred CcccchhhhhHHHHHHHhh-hcceeEeeeeecceEEEecccCCCcchhhhhhHHHhhhhccccCchhhHhHH--------
Q psy15011 17 NPHEYLKECWPLVKNALEL-HFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYL-------- 87 (334)
Q Consensus 17 ~~~~ylke~w~~v~~~L~~-~~i~~~ldl~egsmtV~Ttkkt~dPyiiikardlikl~sRsVpvP~~Re~yL-------- 87 (334)
+.-+||...|+.+.+.|.+ +++.+++|+.+|+|+|.|+++|+||+.+.+|+||++.++|+++++..- +-|
T Consensus 13 ~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~-~Ll~Dd~~~e~ 91 (191)
T 1tua_A 13 ERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAF-RLLEEDQILVV 91 (191)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHG-GGGSTTEEEEE
T ss_pred HHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhh-hcccCcceeEE
Confidence 3456899999999999976 889999999999999999999999999999999999999998865531 111
Q ss_pred ---hhh------------------hhhHHHHHh-hcceeEEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHH
Q psy15011 88 ---KEC------------------WPLVKNALE-LHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 145 (334)
Q Consensus 88 ---Ke~------------------W~~I~~~le-~~~l~i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e 145 (334)
++. =..-.+.+| .+|+.+-++- ..|.|-. ++-.+.-|++.|..+..|-+..
T Consensus 92 i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~--~~v~i~G-----~~~~i~~Ar~~i~~li~g~~h~ 164 (191)
T 1tua_A 92 VDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE--YEVAIIG-----DYERAMAAKQAIEMLAEGRMHS 164 (191)
T ss_dssp EETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS--SEEEEEE-----EHHHHHHHHHHHHHHHTTCCHH
T ss_pred EEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC--CEEEEEe-----ChHHHHHHHHHHHHHHcCCCch
Confidence 110 111223443 5777777764 5777754 3456688999999888887664
Q ss_pred HHHHhh
Q psy15011 146 QAVRVL 151 (334)
Q Consensus 146 ~AlkLL 151 (334)
.....|
T Consensus 165 ~vy~~~ 170 (191)
T 1tua_A 165 TVYRHL 170 (191)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 444444
No 9
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.08 E-value=2.3e-06 Score=64.68 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=46.8
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|++.+.|+..|||+|.|.+.. ++ ..| -...+|.|.|+.+++.
T Consensus 13 ~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~-----~~---------~~~---------------~~~~~v~I~G~~~~v~ 63 (76)
T 1dtj_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKG-----EF---------LPG---------------TRNRRVTITGSPAATQ 63 (76)
T ss_dssp THHHHHCSTTHHHHHHHHHHCCEEEECCTT-----CC---------STT---------------CCEEEEEEEESHHHHH
T ss_pred HcceEECCCchHHHHHHHHhCCEEEECcCC-----CC---------CCC---------------CceeEEEEEeCHHHHH
Confidence 368999999999999999999999943210 00 000 0135899999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|++.|.+++.
T Consensus 64 ~A~~~I~~~i~ 74 (76)
T 1dtj_A 64 AAQYLISQRVT 74 (76)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 10
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.97 E-value=4e-06 Score=65.33 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=47.0
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|++.+.|+..|||+|.|.+.. ++ . .| -...+|.|.|+.+++.
T Consensus 13 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~~------~---~g---------------~~~r~v~I~G~~~~v~ 63 (87)
T 1ec6_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKG-----EF------L---PG---------------TRNRRVTITGSPAATQ 63 (87)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCTT-----CB------S---TT---------------SCEEEEEEESSHHHHH
T ss_pred HcCeeECCCcHhHHHHHHHhCCEEEEccCC-----CC------C---CC---------------CCceEEEEEcCHHHHH
Confidence 368999999999999999999999932210 00 0 00 0125899999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|++.|++++.
T Consensus 64 ~A~~~I~~~i~ 74 (87)
T 1ec6_A 64 AAQYLISQRVT 74 (87)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 11
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.93 E-value=4.6e-06 Score=70.81 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=49.2
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEec-CCccH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHKGL 253 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG-~~~~l 253 (334)
-+|||||++|+|.+.||.-|||+|.|.|+--.-.|.. ++- +|... -+. -..-+|.|.| +.+.+
T Consensus 23 ~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~----~~~---~~~~~--~~~-------~e~lhV~I~a~~~e~~ 86 (131)
T 1k1g_A 23 FVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKV----GRK---DGQML--PGE-------DEPLHALVTANTMENV 86 (131)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSS----SSC---CCCCS--CCS-------SCCEEEEEEESSHHHH
T ss_pred eeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccc----ccc---ccccc--ccc-------CCCeEEEEEECCHHHH
Confidence 4799999999999999999999999555311111110 011 11100 000 1123555555 46889
Q ss_pred HHHHHHHHHHhcCCC
Q psy15011 254 LQVRRIVEDTMKNIH 268 (334)
Q Consensus 254 ~~ar~av~~li~g~h 268 (334)
..|.+.|++++...+
T Consensus 87 ~~A~~~I~~ll~~~~ 101 (131)
T 1k1g_A 87 KKAVEQIRNILKQGI 101 (131)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999997743
No 12
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=97.93 E-value=5.3e-06 Score=64.47 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=47.2
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|+|.+.|+..|||+|.|.+. |.... -....|.|.|+.+++.
T Consensus 24 ~ig~IIGkgG~~Ik~I~~~tga~I~i~~~-------------------~~~~~-----------~~er~v~I~G~~~~v~ 73 (85)
T 2opv_A 24 KAGLVIGKGGETIKQLQERAGVKMILIQD-------------------GSQNT-----------NVDKPLRIIGDPYKVQ 73 (85)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEECSS-------------------SCSST-----------TSCEEEEEEECHHHHH
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEcCC-------------------CCCCC-----------CCceEEEEEeCHHHHH
Confidence 47899999999999999999999994331 11000 0134588999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|+++|.+++.
T Consensus 74 ~A~~~I~~i~~ 84 (85)
T 2opv_A 74 QACEMVMDILR 84 (85)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 13
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.92 E-value=1.3e-05 Score=69.21 Aligned_cols=102 Identities=23% Similarity=0.186 Sum_probs=62.6
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccce---eeeeccEEEEecC-C
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCY---MLVQGQTVAALGP-H 250 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~---~~V~g~tV~iiG~-~ 250 (334)
-+||||||.|.|.+.||..|||+|.|.|+ |+.. ..+.=+.++|-- -+=..=+|.|.|+ +
T Consensus 18 fiG~IiGPrG~t~K~ie~eTg~kI~IrGk-----GS~k------------d~~~e~~~~g~~~~~~~~epLHV~Isa~~~ 80 (140)
T 2bl5_A 18 FVGRILGPRGLTAKQLEAETGCKIMVRGK-----GSMR------------DKKKEEQNRGKPNWEHLNEDLHVLITVEDA 80 (140)
T ss_dssp HHHHHTTTTHHHHHHHHHHHSEEEEEEST-----TSSC------------CHHHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred eeeEEECCCcchHHHHHHHHCCeEEEecC-----CCcc------------cccccccccCCCCccccCCCcEEEEEecCc
Confidence 47999999999999999999999995443 2221 111112222210 0001115666664 3
Q ss_pred c-----cHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhcC-CccccCCc
Q psy15011 251 K-----GLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKD-PKLKNENW 293 (334)
Q Consensus 251 ~-----~l~~ar~av~~li~g~hpiy~ik~l~~kr~l~~~-~~~~~~~w 293 (334)
+ .+..|.+.|++++...|.-++.-.-.--||||-= -.+.+.+|
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~ 129 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANL 129 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGG
T ss_pred hhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcc
Confidence 3 6899999999999887765554444455788742 24444444
No 14
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.92 E-value=1.1e-05 Score=67.88 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=77.9
Q ss_pred cCchhhHhHHhhhhhhH-HHHHhhcceeEEEEcc-------CCeEEEEcCCCCCChhHHHhHHHHHHHHhc-----CCCH
Q psy15011 78 PYEPLKEEYLKECWPLV-KNALELHFIKAELDVI-------EGSMTVFTTRKTWDPYIIIKARDMIKLLSR-----SVPY 144 (334)
Q Consensus 78 pvP~~Re~yLKe~W~~I-~~~le~~~l~i~id~~-------~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~r-----GF~~ 144 (334)
.+|+.....|-.-=... +.+-+++++.+.++.. ++.|+|. .+|..+.+|+++|..+.. ||++
T Consensus 7 ~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~ii~e~~~~~~~~ 81 (164)
T 2jvz_A 7 MIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRII-----GDPYKVQQACEMVMDILRERDQGGFGD 81 (164)
T ss_dssp EECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEE-----ECHHHHHHHHHHHHHHTTCSSSCCCSS
T ss_pred EechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 34555444444433333 4445789999988643 2357775 367899999999998876 3332
Q ss_pred HHHHHhhhccceeeE-EeccccccCcchhccccceeeCCCcchHHHHHHhhceEEEec-------ceeeeeecCCcccc
Q psy15011 145 EQAVRVLQDDISCDI-IKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQ-------GQTVAALGPHKGLL 215 (334)
Q Consensus 145 e~AlkLL~DDi~~dI-IdIk~~v~n~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~-------gktV~IIG~~~~ik 215 (334)
. +++.... ..+ .+ .--....|+|||++|++.+.|+..|||+|.|. +.+|.|.|..+++.
T Consensus 82 ~-------~~~~~~~~~~~-~i----~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~ 148 (164)
T 2jvz_A 82 R-------NEYGSRIGGGI-DV----PVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCE 148 (164)
T ss_dssp C-------SSCTTSCSSSB-CC----EEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHH
T ss_pred c-------cccCCCCCceE-EE----EEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHH
Confidence 1 1111100 000 00 01123579999999999999999999999998 46889998876654
No 15
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=97.91 E-value=6.5e-06 Score=65.03 Aligned_cols=60 Identities=13% Similarity=0.348 Sum_probs=48.1
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|+|.+.|+..|||+|.|.+.. .| -...+|.|.|+.+++.
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----------------~g---------------~~~r~v~I~G~~e~v~ 72 (92)
T 1x4n_A 25 MVGFIIGRGGEQISRIQQESGCKIQIAPDS-----------------GG---------------LPERSCMLTGTPESVQ 72 (92)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEECSCC-----------------TT---------------CSEEEEEEEECHHHHH
T ss_pred HcceeECCCchHHHHHHHHhCCEEEEcCCC-----------------CC---------------CCccEEEEEeCHHHHH
Confidence 468999999999999999999999943321 00 0135899999999999
Q ss_pred HHHHHHHHHhcC
Q psy15011 255 QVRRIVEDTMKN 266 (334)
Q Consensus 255 ~ar~av~~li~g 266 (334)
.|++.|++++..
T Consensus 73 ~A~~~I~~~i~~ 84 (92)
T 1x4n_A 73 SAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998854
No 16
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.90 E-value=6.7e-06 Score=65.80 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=46.8
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHHH
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~~ 255 (334)
.|+|||++|++.+.|+..|||+|.|.+. |++ ..++|.|.|+.+++..
T Consensus 28 ig~IIG~gG~~Ir~I~e~tg~~I~i~~~----------------g~~-----------------~~~~V~I~G~~e~v~~ 74 (95)
T 2ctm_A 28 HARIIGARGKAIRKIMDEFKVDIRFPQS----------------GAP-----------------DPNCVTVTGLPENVEE 74 (95)
T ss_dssp HHHHHCSSSCHHHHHHHHHTCEEECCCT----------------TCS-----------------CTTEEEEESCHHHHHH
T ss_pred ccccCCCCcchHHHHHHHHCCeEEecCC----------------CCC-----------------CCcEEEEEcCHHHHHH
Confidence 6799999999999999999999994332 110 1458999999999999
Q ss_pred HHHHHHHHhc
Q psy15011 256 VRRIVEDTMK 265 (334)
Q Consensus 256 ar~av~~li~ 265 (334)
|++.|++++.
T Consensus 75 A~~~I~~i~~ 84 (95)
T 2ctm_A 75 AIDHILNLEE 84 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=97.85 E-value=7.8e-06 Score=62.05 Aligned_cols=59 Identities=12% Similarity=0.253 Sum_probs=47.4
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|++.+.|+..|||+|.|.+. . + | -...+|.|.|+.+++.
T Consensus 15 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~---------~-~---------------~~~~~v~I~G~~~~v~ 62 (76)
T 2p2r_A 15 LIGCIIGRQGAKINEIRQMSGAQIKIANP-------V---------E-G---------------STDRQVTITGSAASIS 62 (76)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCC-------C---------T-T---------------CSEEEEEEEECHHHHH
T ss_pred HcceEECCCChHHHHHHHHHCCEEEEcCC-------C---------C-C---------------CCeEEEEEEeCHHHHH
Confidence 36899999999999999999999995431 0 0 0 1246799999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|+..|.+++.
T Consensus 63 ~A~~~I~~~i~ 73 (76)
T 2p2r_A 63 LAQYLINVRLS 73 (76)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 18
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.84 E-value=1.8e-05 Score=64.36 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=48.6
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|+|.+.|++.|+|+|.|.+..- . ++ + -...+|.|.|+.+++.
T Consensus 17 ~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-----~----------~~----------~----~~~r~V~I~G~~e~v~ 67 (107)
T 2hh2_A 17 KCGLVIGRGGENVKAINQQTGAFVEISRQLP-----P----------NG----------D----PNFKLFIIRGSPQQID 67 (107)
T ss_dssp GTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-----T----------TC----------C----TTEEEEEEESCHHHHH
T ss_pred HcCccCCCCcHHHHHHHHHhCCEEEEcCccC-----C----------CC----------C----CCceEEEEECCHHHHH
Confidence 4689999999999999999999999443210 0 00 0 0136899999999999
Q ss_pred HHHHHHHHHhcC
Q psy15011 255 QVRRIVEDTMKN 266 (334)
Q Consensus 255 ~ar~av~~li~g 266 (334)
.|++.|++++..
T Consensus 68 ~A~~~I~~~i~e 79 (107)
T 2hh2_A 68 HAKQLIEEKIEG 79 (107)
T ss_dssp HHHHHHHHHSCS
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
No 19
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=97.83 E-value=1.2e-05 Score=62.02 Aligned_cols=59 Identities=14% Similarity=0.311 Sum_probs=46.9
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|++.+.|+..|||+|.|.+. . .| -...+|.|.|+.+++.
T Consensus 17 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------------~---~~---------------~~~~~v~I~G~~~~v~ 64 (82)
T 1zzk_A 17 LAGSIIGKGGQRIKQIRHESGASIKIDEP--------------L---EG---------------SEDRIITITGTQDQIQ 64 (82)
T ss_dssp TGGGGTCGGGHHHHHHHHHHCCEEEECCT--------------T---SC---------------SSEEEEEEEECHHHHH
T ss_pred hcCeeECCCchHHHHHHHHHCCEEEEcCC--------------C---CC---------------CCceEEEEEeCHHHHH
Confidence 46899999999999999999999994331 0 00 0135799999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|++.|++++.
T Consensus 65 ~A~~~I~~~i~ 75 (82)
T 1zzk_A 65 NAQYLLQNSVK 75 (82)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 20
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=97.82 E-value=1.4e-05 Score=60.39 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=44.9
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHHH
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~~ 255 (334)
.|+|||++|++.+.|++-|||+|.|.+ .|. ...+|.|.|+.+++..
T Consensus 16 ig~iIG~gG~~I~~I~e~tg~~I~i~~-------------------~g~---------------~~~~V~I~G~~~~v~~ 61 (71)
T 1vig_A 16 HRHLIGKSGANINRIKDQYKVSVRIPP-------------------DSE---------------KSNLIRIEGDPQGVQQ 61 (71)
T ss_dssp HHHHTCSSCCHHHHHHHHTCCEEECCC-------------------CCS---------------SSEEEEEEESSHHHHH
T ss_pred hhhhcCCCCccHHHHHHHHCCEEEECC-------------------CCC---------------cccEEEEEcCHHHHHH
Confidence 679999999999999999999999221 221 1248999999999999
Q ss_pred HHHHHHHHh
Q psy15011 256 VRRIVEDTM 264 (334)
Q Consensus 256 ar~av~~li 264 (334)
|++.|.++.
T Consensus 62 A~~~I~~i~ 70 (71)
T 1vig_A 62 AKRELLELA 70 (71)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999998874
No 21
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.76 E-value=2.8e-05 Score=61.58 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=48.9
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|+|.+.|+..|+|+|.|.+. |... .-....|.|.|+.+++.
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~-------------------~~~~-----------~~~~r~v~I~G~~~~v~ 74 (94)
T 1x4m_A 25 KAGLVIGKGGETIKQLQERAGVKMVMIQD-------------------GPQN-----------TGADKPLRITGDPYKVQ 74 (94)
T ss_dssp HHHHHSCSSSSHHHHHHHHHTSEEEECCS-------------------CCCS-----------SCSCEEEEEEECTTTHH
T ss_pred hcceEECCCCHHHHHHHHHHCCeEEecCC-------------------CCCC-----------CCCceEEEEEeCHHHHH
Confidence 46899999999999999999999994331 1100 01235688999999999
Q ss_pred HHHHHHHHHhcC
Q psy15011 255 QVRRIVEDTMKN 266 (334)
Q Consensus 255 ~ar~av~~li~g 266 (334)
.|++.|++++..
T Consensus 75 ~A~~~I~~~i~~ 86 (94)
T 1x4m_A 75 QAKEMVLELIRD 86 (94)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
No 22
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=8.4e-06 Score=68.44 Aligned_cols=74 Identities=14% Similarity=0.302 Sum_probs=50.2
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEec-CCccH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG-PHKGL 253 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG-~~~~l 253 (334)
.+|+|||++|+|.+.||.-|||+|.|.|+--+-+ +.+..+. +-..-+|.|.+ +.+.+
T Consensus 29 ~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~------------e~~~~~e----------~~e~l~V~I~a~~~e~i 86 (119)
T 2yqr_A 29 VKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCI------------EPASGRE----------AFEPMYIYISHPKPEGL 86 (119)
T ss_dssp HHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCC------------CTTTSSC----------CSSBCEEEEEESSHHHH
T ss_pred eeeeEECCCChHHHHHHHHHCCEEEEecCCcccc------------ccccccc----------cCCCcEEEEEeCCHHHH
Confidence 4789999999999999999999999554311100 0011111 12234666665 47889
Q ss_pred HHHHHHHHHHhcCCCch
Q psy15011 254 LQVRRIVEDTMKNIHPI 270 (334)
Q Consensus 254 ~~ar~av~~li~g~hpi 270 (334)
+.|++.|++|+...|.-
T Consensus 87 ~~A~~~Ie~Ll~~v~~~ 103 (119)
T 2yqr_A 87 AAAKKLCENLLQTVHAE 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHH
Confidence 99999999998765443
No 23
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.71 E-value=1.5e-05 Score=64.20 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=48.5
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|+|.+.|+..|||+|.|.+.. .|+ .-...+|.|.|+.+++.
T Consensus 25 ~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~-----------------~~~-------------~~~~~~V~I~G~~~~v~ 74 (104)
T 1we8_A 25 SVGRIIGRGGETIRSICKASGAKITCDKES-----------------EGT-------------LLLSRLIKISGTQKEVA 74 (104)
T ss_dssp THHHHHTTTSHHHHHHHHHHCCEEEECCSS-----------------CCS-------------SSSEEEEEEEEEHHHHH
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEecCC-----------------CCC-------------CCCcceEEEEcCHHHHH
Confidence 468999999999999999999999943320 000 01246899999999999
Q ss_pred HHHHHHHHHhcC
Q psy15011 255 QVRRIVEDTMKN 266 (334)
Q Consensus 255 ~ar~av~~li~g 266 (334)
.|++.|..++..
T Consensus 75 ~A~~~I~~~i~e 86 (104)
T 1we8_A 75 AAKHLILEKVSE 86 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
No 24
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.71 E-value=1.4e-05 Score=64.95 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=47.4
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHHH
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~~ 255 (334)
.|+|||++|++.+.|+.-|||+|.|. +.|.. -.+|.|.|+.+++..
T Consensus 28 ig~IIG~gG~~Ir~I~eetg~~I~I~-------------------~~g~~---------------~~~V~I~G~~e~v~~ 73 (104)
T 2ctk_A 28 HRYVIGQKGSGIRKMMDEFEVNIHVP-------------------APELQ---------------SDIIAITGLAANLDR 73 (104)
T ss_dssp HHHHHCSSSHHHHHHHHHTCCEEECC-------------------CTTTT---------------CCEEEEEECHHHHHH
T ss_pred ccceeCCCchHHHHHHHHHCCEEEec-------------------CCCCC---------------cceEEEEcCHHHHHH
Confidence 67999999999999999999999922 22210 038999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy15011 256 VRRIVEDTMKNIH 268 (334)
Q Consensus 256 ar~av~~li~g~h 268 (334)
|++.|..++.-.+
T Consensus 74 A~~~I~~i~~e~e 86 (104)
T 2ctk_A 74 AKAGLLERVKELQ 86 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 9999999875433
No 25
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.71 E-value=1.4e-05 Score=62.70 Aligned_cols=59 Identities=14% Similarity=0.320 Sum_probs=47.4
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|++.+.|+..|||+|.|.+.. .| -...+|.|.|+.+++.
T Consensus 24 ~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~-----------------~~---------------~~~~~v~I~G~~e~v~ 71 (89)
T 1j5k_A 24 LAGSIIGKGGQRIKQIRHESGASIKIDEPL-----------------EG---------------SEDRIITITGTQDQIQ 71 (89)
T ss_dssp HHHHHHCGGGHHHHHHHHHTCCEEEECSCC-----------------SS---------------SSEEEEEEEEEHHHHH
T ss_pred hcceeECCCCHhHHHHHHHhCCeEEecCCC-----------------CC---------------CCccEEEEEcCHHHHH
Confidence 468999999999999999999999944310 00 1236799999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|++.|++++.
T Consensus 72 ~A~~~I~~~i~ 82 (89)
T 1j5k_A 72 NAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 26
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=97.68 E-value=2.3e-05 Score=60.38 Aligned_cols=60 Identities=13% Similarity=0.326 Sum_probs=47.5
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|++.+.|+..|||+|.|.+.. .| -...+|.|.|+.+++.
T Consensus 16 ~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~-----------------~~---------------~~~r~v~I~G~~~~v~ 63 (82)
T 1wvn_A 16 LIGCIIGRQGANINEIRQMSGAQIKIANPV-----------------EG---------------SSGRQVTITGSAASIS 63 (82)
T ss_dssp GHHHHHCGGGHHHHHHHHHHCCEEEECCCC-----------------TT---------------CSEEEEEEEECHHHHH
T ss_pred hccceeCCCchhHHHHHHHhCCEEEEecCC-----------------CC---------------CCceEEEEEcCHHHHH
Confidence 468999999999999999999999954310 00 1235788999999999
Q ss_pred HHHHHHHHHhcC
Q psy15011 255 QVRRIVEDTMKN 266 (334)
Q Consensus 255 ~ar~av~~li~g 266 (334)
.|+..|.+++..
T Consensus 64 ~A~~~I~~~i~~ 75 (82)
T 1wvn_A 64 LAQYLINARLSS 75 (82)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 27
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.68 E-value=0.00042 Score=63.29 Aligned_cols=127 Identities=21% Similarity=0.229 Sum_probs=94.3
Q ss_pred ccchhhhhHHHHHHHhh-hcceeEeeeeecceEEEecccCCCcchhhhhhHHHhhhhccccCchhh--------------
Q psy15011 19 HEYLKECWPLVKNALEL-HFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLK-------------- 83 (334)
Q Consensus 19 ~~ylke~w~~v~~~L~~-~~i~~~ldl~egsmtV~Ttkkt~dPyiiikardlikl~sRsVpvP~~R-------------- 83 (334)
.++|...|..+.+.|.+ +++.+++|..+|+++++++..|+||+.+.+|+++++.++|+.+++...
T Consensus 45 ig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll~dd~~~e~i~i 124 (219)
T 2e3u_A 45 IAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINL 124 (219)
T ss_dssp HHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGGSTTCEEEEEEG
T ss_pred hhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceeccCCccceeEEc
Confidence 35788899999999955 789999998899999999999999999999999999999876543211
Q ss_pred --------HhHHhhh-------hhhHHHHH-hhcceeEEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHHHH
Q psy15011 84 --------EEYLKEC-------WPLVKNAL-ELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQA 147 (334)
Q Consensus 84 --------e~yLKe~-------W~~I~~~l-e~~~l~i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e~A 147 (334)
..+++.. =....+.| +.+++.+.+. +..|.|.. ++..+..|++.|..+..|-+....
T Consensus 125 ~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~--~~~v~i~G-----~~~~i~~A~~~i~~li~g~~~~~v 197 (219)
T 2e3u_A 125 TDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY--GKTVAIIG-----NPIQIEIAKTAIEKLARGSPHGSV 197 (219)
T ss_dssp GGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE--TTEEEEEE-----CHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC--CeEEEEEe-----CHHHHHHHHHHHHHHHcCCCcHHH
Confidence 0011110 11122334 3577777775 56677764 466789999999999999988888
Q ss_pred HHhhh
Q psy15011 148 VRVLQ 152 (334)
Q Consensus 148 lkLL~ 152 (334)
...|+
T Consensus 198 y~~l~ 202 (219)
T 2e3u_A 198 YRYLE 202 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
No 28
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.62 E-value=9.4e-05 Score=63.37 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=78.2
Q ss_pred ccCchhhHhHHhhh-hhhHHHHHhhcceeEEEEccC-----CeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHH-----
Q psy15011 77 VPYEPLKEEYLKEC-WPLVKNALELHFIKAELDVIE-----GSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE----- 145 (334)
Q Consensus 77 VpvP~~Re~yLKe~-W~~I~~~le~~~l~i~id~~~-----g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e----- 145 (334)
+.+|+.....|-.- -..|+.+-++++++|.++... +.|+|.. ++..+.+|.++|..+.+.+...
T Consensus 7 ~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~~~~~~ 81 (174)
T 1j4w_A 7 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG-----PPDRAQHAAEIITDLLRSVQAGNPGGP 81 (174)
T ss_dssp EEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 34455555554433 344556668899999997543 3667754 4778999999998877644210
Q ss_pred ----HHHHhhhcccee----eEEeccccccCcchhccccceeeCCCcchHHHHHHhhceEEEecc----------eeeee
Q psy15011 146 ----QAVRVLQDDISC----DIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQG----------QTVAA 207 (334)
Q Consensus 146 ----~AlkLL~DDi~~----dIIdIk~~v~n~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~g----------ktV~I 207 (334)
.+...+.+++.. ....+.-.+. ....|+|||++|++.+.|+..|||+|.|.+ .+|.|
T Consensus 82 ~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp-----~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I 156 (174)
T 1j4w_A 82 GPGGRGRGRGQGNWNMGPPGGLQEFNFIVP-----TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTI 156 (174)
T ss_dssp ----------------------CEEEEEEE-----TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCccccCCCCCcEEEEEEEC-----hHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEE
Confidence 111111111110 0001110111 134799999999999999999999999986 57888
Q ss_pred ecCCcccc
Q psy15011 208 LGPHKGLL 215 (334)
Q Consensus 208 IG~~~~ik 215 (334)
.|+.+++.
T Consensus 157 ~G~~~~v~ 164 (174)
T 1j4w_A 157 RGTPQQID 164 (174)
T ss_dssp ECCHHHHH
T ss_pred ECCHHHHH
Confidence 88776553
No 29
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.60 E-value=3.5e-05 Score=62.89 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=46.8
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHHH
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~~ 255 (334)
.|+|||++|+|.+.|++.|+|+|.|.+.. + + -...+|.|.|+.+++..
T Consensus 22 iG~IIGkgG~~Ik~I~~~TGakI~I~~~~------------------~----------~----~~er~V~I~G~~e~v~~ 69 (106)
T 2hh3_A 22 VGVVIGRSGEMIKKIQNDAGVRIQFKQDD------------------G----------T----GPEKIAHIMGPPDRCEH 69 (106)
T ss_dssp HHHHHTTTTHHHHHHHHHHTCEEEECSSC------------------S----------S----SSEEEEEEESSHHHHHH
T ss_pred cCccCCCCcHHHHHHHHHHCcEEEEecCC------------------C----------C----CceeEEEEEeCHHHHHH
Confidence 68999999999999999999999933210 0 0 01247999999999999
Q ss_pred HHHHHHHHhcC
Q psy15011 256 VRRIVEDTMKN 266 (334)
Q Consensus 256 ar~av~~li~g 266 (334)
|++.|++++..
T Consensus 70 A~~~I~~ii~~ 80 (106)
T 2hh3_A 70 AARIINDLLQS 80 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998854
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.56 E-value=1.2e-05 Score=68.49 Aligned_cols=93 Identities=13% Similarity=0.237 Sum_probs=74.2
Q ss_pred cccceeeCCCcchHHHHHHhhceEEEecce---eeeeecC-C--------------------ccccccccCCCCccchhh
Q psy15011 174 KRRQRLIGPNGCTLKSIELLTNCYMLVQGQ---TVAALGP-H--------------------KGLLQSNIGPNGCTLKSI 229 (334)
Q Consensus 174 R~rGRIIG~~GkTkkaIE~lT~~~I~V~gk---tV~IIG~-~--------------------~~ik~~~~g~~g~~~~~~ 229 (334)
...|.+||++|.+-+.|++.+|+.|..+.. ++-+.|. . ++..+++||-+|+.-+.+
T Consensus 13 ~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~~~p~~v~~~~~~l~~~e~~v~Vp~~~~g~~IGK~G~nIr~i 92 (144)
T 2qnd_A 13 DLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKNGKLIQEI 92 (144)
T ss_dssp GGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHCEEEEEEEEEGGGHHHHHCGGGHHHHHH
T ss_pred cceeeEECCChhHHHHHHHHHCCeEeccCCCchheeeccCCHHHHHHHHHhhhcceEEEEECHHHcCeeECCCCHHHHHH
Confidence 346899999999999999999966654431 2333332 1 345578999999999999
Q ss_pred hhhccc-eeeeecc------------EEEEecCCccHHHHHHHHHHHhcC
Q psy15011 230 ELLTNC-YMLVQGQ------------TVAALGPHKGLLQVRRIVEDTMKN 266 (334)
Q Consensus 230 e~~~~~-~~~V~g~------------tV~iiG~~~~l~~ar~av~~li~g 266 (334)
-++||+ .|.|.+. +|.|.|+.+++..|+..|++.+..
T Consensus 93 ~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 93 VDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 999996 8888752 488999999999999999999865
No 31
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.56 E-value=0.00013 Score=62.55 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=78.4
Q ss_pred ccCchhhHhHHhhh-hhhHHHHHhhcceeEEEEccC--------CeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHHHH
Q psy15011 77 VPYEPLKEEYLKEC-WPLVKNALELHFIKAELDVIE--------GSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQA 147 (334)
Q Consensus 77 VpvP~~Re~yLKe~-W~~I~~~le~~~l~i~id~~~--------g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e~A 147 (334)
+.+|+.....+-.- -..|+.+-++++++|.++... +.|+|.. ++-.+.+|.++|..+.+.++...+
T Consensus 10 i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~~~ 84 (178)
T 2anr_A 10 VLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-----TIEALNAVHGFIAEKIREMPQNVA 84 (178)
T ss_dssp EEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-----CHHHHHHHHHHHHHHHTCCCCC--
T ss_pred EEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-----CHHHHHHHHHHHHHHHhccCCccc
Confidence 44555555544433 344555557899999997532 2567654 367899999999988887754322
Q ss_pred HHhhhccceeeEEecccc--ccCcchhc--------cccceeeCCCcchHHHHHHhhceEEEecce---------eeeee
Q psy15011 148 VRVLQDDISCDIIKIGNL--VQNKQRFV--------KRRQRLIGPNGCTLKSIELLTNCYMLVQGQ---------TVAAL 208 (334)
Q Consensus 148 lkLL~DDi~~dIIdIk~~--v~n~~~l~--------R~rGRIIG~~GkTkkaIE~lT~~~I~V~gk---------tV~II 208 (334)
- .+.+++..- ..+.+... ...|+|||++|++.+.|+..|||+|.|.+. +|.|.
T Consensus 85 ~--------~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~ 156 (178)
T 2anr_A 85 K--------TEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVS 156 (178)
T ss_dssp -----------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEE
T ss_pred c--------CCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEE
Confidence 1 111111000 00111111 125999999999999999999999999764 78888
Q ss_pred cCCcccc
Q psy15011 209 GPHKGLL 215 (334)
Q Consensus 209 G~~~~ik 215 (334)
|..+++.
T Consensus 157 G~~~~v~ 163 (178)
T 2anr_A 157 GEPEQNR 163 (178)
T ss_dssp SSHHHHH
T ss_pred cCHHHHH
Confidence 8876653
No 32
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=97.54 E-value=4.5e-05 Score=57.80 Aligned_cols=57 Identities=14% Similarity=0.367 Sum_probs=46.6
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|+|||++|++.+.|...|||+|.|.+. |+ ....|.|.|+.+++.
T Consensus 15 ~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------------------~~---------------~er~v~I~G~~~~v~ 60 (73)
T 2axy_A 15 EVGSIIGKKGESVKKMREESGARINISEG-------------------NC---------------PERIITLAGPTNAIF 60 (73)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECSS-------------------CC---------------SEEEEEEEECHHHHH
T ss_pred HeeeEECCCCHHHHHHHHHHCCEEEEecC-------------------CC---------------CcEEEEEEeCHHHHH
Confidence 36899999999999999999999994331 10 134789999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|.+.|.+++.
T Consensus 61 ~A~~~I~~~l~ 71 (73)
T 2axy_A 61 KAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 33
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.54 E-value=5.5e-05 Score=60.60 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=46.3
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHHH
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~~ 255 (334)
.|+|||++|++.+.|+..|||+|.|.+ +|.. + -...+|.|.|+.+++..
T Consensus 28 ig~IIGkgG~~Ik~I~~etg~~I~i~~-------------------~g~~--------~----~~~~~V~I~G~~e~v~~ 76 (97)
T 2ctl_A 28 HPKIIGRKGAVITQIRLEHDVNIQFPD-------------------KDDG--------N----QPQDQITITGYEKNTEA 76 (97)
T ss_dssp HHHHSCSSSCHHHHHHHHHTCEEECCC-------------------TTTC--------S----SCSSEEEEESCHHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHCCEEEecC-------------------CCCC--------C----CCccEEEEEeCHHHHHH
Confidence 579999999999999999999999222 1110 0 02358999999999999
Q ss_pred HHHHHHHHhc
Q psy15011 256 VRRIVEDTMK 265 (334)
Q Consensus 256 ar~av~~li~ 265 (334)
|++.|..++.
T Consensus 77 A~~~I~~iv~ 86 (97)
T 2ctl_A 77 ARDAILRIVG 86 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 34
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.43 E-value=4.9e-05 Score=60.29 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=45.7
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|.|||++|+|.+.|+.-|||+|.|.+. + -...+|.|.|+.+++.
T Consensus 27 ~ig~IIG~gG~~Ik~I~~etg~~I~i~~~-------------------~---------------~~~~~V~I~G~~e~v~ 72 (94)
T 2cte_A 27 HHRFVIGKNGEKLQDLELKTATKIQIPRP-------------------D---------------DPSNQIKITGTKEGIE 72 (94)
T ss_dssp THHHHHCSSSCHHHHHHHHTTCCCBCCCT-------------------T---------------SSCCEEEEEECHHHHH
T ss_pred HeeeeECCCChhHHHHHHHHCCEEEeCCC-------------------C---------------CCCCeEEEEECHHHHH
Confidence 36899999999999999999999993211 0 0135899999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|++.|..++.
T Consensus 73 ~A~~~I~~i~~ 83 (94)
T 2cte_A 73 KARHEVLLISA 83 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988864
No 35
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.00026 Score=55.44 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=45.9
Q ss_pred ccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
..|-|||++|.|.+.|+..|||+|.|... + .+..|-|-|+.+++.
T Consensus 20 ~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-------------------~----------------~~~~v~ItG~~e~v~ 64 (83)
T 2dgr_A 20 VVGLVVGPKGATIKRIQQRTHTYIVTPGR-------------------D----------------KEPVFAVTGMPENVD 64 (83)
T ss_dssp HHHHHHTTTTSSHHHHHHHTTCEEECCCS-------------------S----------------SCCEEEEEECTTTHH
T ss_pred HeeeeECCCchHHHHHHHHhCCeEEecCC-------------------C----------------CCCeEEEEcCHHHHH
Confidence 36789999999999999999999993210 0 145699999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|++.|++.+.
T Consensus 65 ~A~~~I~~~i~ 75 (83)
T 2dgr_A 65 RAREEIEAHIT 75 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.13 E-value=0.0005 Score=58.02 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=74.8
Q ss_pred cCchhhHhHHhhh-hhhHHHHHhhcceeEEEEcc------CCeEEEEcCCCCCChhHHHhHHHHHHHHhcCC---CHHHH
Q psy15011 78 PYEPLKEEYLKEC-WPLVKNALELHFIKAELDVI------EGSMTVFTTRKTWDPYIIIKARDMIKLLSRSV---PYEQA 147 (334)
Q Consensus 78 pvP~~Re~yLKe~-W~~I~~~le~~~l~i~id~~------~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF---~~e~A 147 (334)
.+|+.....+-.- -..|+.+-+++++.+.++.. +..|+|.. +|..+.+|+..|..+.... ++.
T Consensus 8 ~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-----~~e~v~~A~~~I~~~~~e~~~~~~~-- 80 (163)
T 3krm_A 8 FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-----PPEAQFKAQGRIYGKLKEENFFGPK-- 80 (163)
T ss_dssp EEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHTTSSCSS--
T ss_pred EechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHhcccccccc--
Confidence 3455444444433 34455555789999998763 23477754 5778899988886543211 110
Q ss_pred HHhhhccce-eeEEeccccccCcchhccccceeeCCCcchHHHHHHhhceEEEecce---------eeeeecCCcccc
Q psy15011 148 VRVLQDDIS-CDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQ---------TVAALGPHKGLL 215 (334)
Q Consensus 148 lkLL~DDi~-~dIIdIk~~v~n~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~gk---------tV~IIG~~~~ik 215 (334)
++.. ..-+.|. ....|+|||++|++.+.|...|||+|.|.+. .|.|.|+.+++.
T Consensus 81 -----~~~~~~~~i~vp---------~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~ 144 (163)
T 3krm_A 81 -----EEVKLETHIRVP---------ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQ 144 (163)
T ss_dssp -----CCCCEEEEEEEE---------TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHH
T ss_pred -----cCCceEEEEEcC---------hhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHH
Confidence 1111 0011111 1447899999999999999999999999876 688888776654
No 37
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.56 E-value=0.0016 Score=52.08 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=45.2
Q ss_pred cceeeCCCcchHHHHHHhh-ceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHH
Q psy15011 176 RQRLIGPNGCTLKSIELLT-NCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT-~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~ 254 (334)
.+.|||++|++.+.|+.-| ||.|.+-+ .|. ..++|.|.|+.+++.
T Consensus 28 i~~iIG~gGk~Ir~I~eetggv~I~i~~-------------------~g~---------------~~~~V~I~G~~~~v~ 73 (95)
T 2ctj_A 28 HNSLIGTKGRLIRSIMEECGGVHIHFPV-------------------EGS---------------GSDTVVIRGPSSDVE 73 (95)
T ss_dssp HHHHHCSSSHHHHHHHHHHTSCEEECCC-------------------TTT---------------TCCEEEEESCHHHHH
T ss_pred HhhhCCCCchhHHHHHHHcCCCEEEeCC-------------------CCC---------------CcceEEEEcCHHHHH
Confidence 4589999999999999999 99998221 110 135899999999999
Q ss_pred HHHHHHHHHhc
Q psy15011 255 QVRRIVEDTMK 265 (334)
Q Consensus 255 ~ar~av~~li~ 265 (334)
.|++.|..++.
T Consensus 74 ~A~~~I~~iv~ 84 (95)
T 2ctj_A 74 KAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988864
No 38
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.89 E-value=0.0026 Score=51.27 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=39.5
Q ss_pred cceeeCCCcchHHHHHHhhceE-EEecceeeeeecCCccccccccCCCCccchhhhhhccceeeee--ccEEEEec-CCc
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCY-MLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ--GQTVAALG-PHK 251 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~-I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~--g~tV~iiG-~~~ 251 (334)
+|-+||++|++.+.|.+.||+. |. +. +-||.|.| +.+
T Consensus 26 Ig~vIG~gGk~Ik~I~e~tGv~~Id---------------------------------------I~eddG~V~I~g~~~e 66 (91)
T 2cpq_A 26 MGLAIGTHGSNIQQARKVPGVTAIE---------------------------------------LDEDTGTFRIYGESAD 66 (91)
T ss_dssp HHHHHTTTTHHHHHHHTSTTEEEEE---------------------------------------EETTTTEEEEEESSHH
T ss_pred hhhhcCCCcHHHHHHHHHhCCeEEE---------------------------------------EEcCCCEEEEEECCHH
Confidence 6789999999999999999997 99 54 36888888 667
Q ss_pred cHHHHHHHHHHH
Q psy15011 252 GLLQVRRIVEDT 263 (334)
Q Consensus 252 ~l~~ar~av~~l 263 (334)
.++.|++.|+.+
T Consensus 67 a~~~A~~~I~~i 78 (91)
T 2cpq_A 67 AVKKARGFLEFV 78 (91)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHHhh
Confidence 777777776543
No 39
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=95.67 E-value=0.003 Score=53.02 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=46.5
Q ss_pred ccccccCCCCccchhhhhhccceeeeecc-----EEEEecCCccHHHHHHHHHHHhc
Q psy15011 214 LLQSNIGPNGCTLKSIELLTNCYMLVQGQ-----TVAALGPHKGLLQVRRIVEDTMK 265 (334)
Q Consensus 214 ik~~~~g~~g~~~~~~e~~~~~~~~V~g~-----tV~iiG~~~~l~~ar~av~~li~ 265 (334)
.-+++||.+|...+.|++.||+.|.|... +|.|.|+.+++..|+..|.++|.
T Consensus 15 ~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 15 EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (160)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred heeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999876 89999999999999998887663
No 40
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.29 E-value=0.016 Score=49.10 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=33.5
Q ss_pred ccceeeCCCcchHHHHHHhhce-EEEecce------------eeeeecCCcccc
Q psy15011 175 RRQRLIGPNGCTLKSIELLTNC-YMLVQGQ------------TVAALGPHKGLL 215 (334)
Q Consensus 175 ~rGRIIG~~GkTkkaIE~lT~~-~I~V~gk------------tV~IIG~~~~ik 215 (334)
..|++||++|++.+-|..+||| +|.|.+. +|.|.|+.+.+.
T Consensus 77 ~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~ 130 (144)
T 2qnd_A 77 LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIA 130 (144)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHH
T ss_pred HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHH
Confidence 3689999999999999999997 9988752 367777776654
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.11 E-value=0.015 Score=46.92 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=40.5
Q ss_pred ceeeCCCcchHHHHHH-hhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeee--ccEEEEecCCccH
Q psy15011 177 QRLIGPNGCTLKSIEL-LTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ--GQTVAALGPHKGL 253 (334)
Q Consensus 177 GRIIG~~GkTkkaIE~-lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~--g~tV~iiG~~~~l 253 (334)
+.|||++|.+.+-|+. .|++.|. +- .+.|.|-|+.+++
T Consensus 39 ~~IIG~~G~~Ik~i~~~~~~v~I~---------------------------------------fp~~~~~ItI~G~~~~V 79 (102)
T 2ctf_A 39 RFIIGKKGQNLAKITQQMPKVHIE---------------------------------------FTEGEDKITLEGPTEDV 79 (102)
T ss_dssp HHHHTTTTCHHHHHHHHCSSSEEE---------------------------------------ECSSSCEEEEEECHHHH
T ss_pred hhhcCCCCccHHHHHHHcCCcEEE---------------------------------------eCCCCCEEEEECCHHHH
Confidence 4788888888888877 5677776 43 5689999999999
Q ss_pred HHHHHHHHHHhc
Q psy15011 254 LQVRRIVEDTMK 265 (334)
Q Consensus 254 ~~ar~av~~li~ 265 (334)
..|+..|+.++.
T Consensus 80 ~~a~~~I~~~v~ 91 (102)
T 2ctf_A 80 SVAQEQIEGMVK 91 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
No 42
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=94.29 E-value=0.013 Score=60.80 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=39.6
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeee-eccEEEEecCC-ccH
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLV-QGQTVAALGPH-KGL 253 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V-~g~tV~iiG~~-~~l 253 (334)
+|++||++|++.+.|+.-|||.|. | ++-+|.|.|+- +.+
T Consensus 578 I~~vIG~gG~~Ik~I~e~tg~~I~---------------------------------------I~d~G~V~I~~~~~~~~ 618 (630)
T 3u1k_A 578 RAKFVGPGGYNLKKLQAETGVTIS---------------------------------------QVDEETFSVFAPTPSAM 618 (630)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEE---------------------------------------ECSSSEEEEEESSHHHH
T ss_pred hheeECCCChhHHHHHHHHCCEEE---------------------------------------EcCCcEEEEEeCCHHHH
Confidence 689999999999999999999999 4 34688888864 567
Q ss_pred HHHHHHHHHHh
Q psy15011 254 LQVRRIVEDTM 264 (334)
Q Consensus 254 ~~ar~av~~li 264 (334)
..|++.|+.++
T Consensus 619 ~~A~~~I~~i~ 629 (630)
T 3u1k_A 619 HEARDFITEIC 629 (630)
T ss_dssp HHHHHHTTC--
T ss_pred HHHHHHHHHHh
Confidence 77777776553
No 43
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=90.83 E-value=0.1 Score=51.40 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=45.7
Q ss_pred cceeeCCCc--chHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccH
Q psy15011 176 RQRLIGPNG--CTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253 (334)
Q Consensus 176 rGRIIG~~G--kTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l 253 (334)
-+.|||++| ...+-|-.-|||.|-+-|... .+.+- .-.-+.|.|-|..+++
T Consensus 41 Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~-------------------~~~~~--------~~ks~~VtItG~~enV 93 (376)
T 3n89_A 41 YSLMTSDNGDHENVASIMAETNTLIQLPDRSV-------------------GGTTP--------DPFAQQVTITGYFGDV 93 (376)
T ss_dssp HHHHHSCCSSSCSHHHHHHHHTCEEECCCCCC-------------------CSSSC--------CTTTTEEEEEEEHHHH
T ss_pred hhhhccCCChHHHHHHHHHHhCCeEECCCCcc-------------------cccCC--------cCCCCeEEEEcCHHHH
Confidence 347999999 999999999999999543310 00000 0123579999999999
Q ss_pred HHHHHHHHHH
Q psy15011 254 LQVRRIVEDT 263 (334)
Q Consensus 254 ~~ar~av~~l 263 (334)
..||.+|.+|
T Consensus 94 E~AR~~I~~l 103 (376)
T 3n89_A 94 DRARMLMRRN 103 (376)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=89.10 E-value=0.24 Score=48.65 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=42.9
Q ss_pred cceeeCCCc--chHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccH
Q psy15011 176 RQRLIGPNG--CTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGL 253 (334)
Q Consensus 176 rGRIIG~~G--kTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l 253 (334)
..+|||++| .+.+-|.+-|||+|.+=+.. .. .+ -.-...+|.|.|..+++
T Consensus 197 H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~--------------d~---------~d-----~~~~~~~ItItGs~e~V 248 (376)
T 3n89_A 197 VDQVLGSSSTAQLMPVIERETTTIISYPCYN--------------NR---------NE-----TRGNIYEIKVVGNIDNV 248 (376)
T ss_dssp HHHHTCCTTSCCHHHHHHHHHTCEEECC-------------------------------------CCEEEEEEESCHHHH
T ss_pred HHHhhcCCCcchHHHHHHHhhCCEEECCCCC--------------Cc---------cc-----ccCCceEEEEEeCHHHH
Confidence 447999998 56689999999999922110 00 00 00123689999999999
Q ss_pred HHHHHHHHHHh
Q psy15011 254 LQVRRIVEDTM 264 (334)
Q Consensus 254 ~~ar~av~~li 264 (334)
..||++|..|+
T Consensus 249 ~~Ark~I~~lL 259 (376)
T 3n89_A 249 LKARRYIMDLL 259 (376)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhC
Confidence 99999999876
No 45
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=79.88 E-value=0.33 Score=51.34 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=0.0
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecc
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQG 202 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~g 202 (334)
+|.+||++|++.+.|..-||+.|.|.+
T Consensus 581 i~~vig~gg~~i~~i~~~tg~~idi~d 607 (726)
T 4aid_A 581 IREVIGSGGKVIREIVATTGAKVDIND 607 (726)
T ss_dssp ---------------------------
T ss_pred HHhhcCCCchhHHHHHHHHCCceeEEC
Confidence 678999999999999999999999653
No 46
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=75.54 E-value=2.5 Score=36.59 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=49.2
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEecCCccHHH
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQ 255 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~l~~ 255 (334)
-++|+|++|.-...||.+|+|.|-| +.+..+ .=.-|-|.|++.-=+-
T Consensus 67 ve~IFGp~Gs~Ip~IE~~SqTLIqV-----------------------------~~~~s~----g~tEVtIfG~~~~Q~r 113 (140)
T 3v69_A 67 LEIMFGKDGEHIPHLESMLHTLIHV-----------------------------NVWGPE----RRAEIWIFGPPPFRRD 113 (140)
T ss_dssp HHHHHCGGGTTHHHHHHHHTSEEEE-----------------------------ECCCTT----SCEEEEEESCHHHHHH
T ss_pred hhcccCCCcCccchHHhhcceeEEE-----------------------------eccCCC----CcEEEEEECCHHHHHH
Confidence 5799999999999999999999992 111110 1124777888877777
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhhh
Q psy15011 256 VRRIVEDTMKNIHPIYNIKALMIKRELA 283 (334)
Q Consensus 256 ar~av~~li~g~hpiy~ik~l~~kr~l~ 283 (334)
|...|.++. -||...||-+--|.
T Consensus 114 ak~MI~sLA-----~~hr~~~~~~~~~~ 136 (140)
T 3v69_A 114 VDRMLTDLA-----HYCRMKLMEIEALE 136 (140)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHC---
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 888777775 47778888775543
No 47
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=71.33 E-value=3.7 Score=32.76 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=43.0
Q ss_pred CchhhHhHHhhhhhhH-HHHHhhccee-EEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCC
Q psy15011 79 YEPLKEEYLKECWPLV-KNALELHFIK-AELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143 (334)
Q Consensus 79 vP~~Re~yLKe~W~~I-~~~le~~~l~-i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~ 143 (334)
+|+.....+-.-=... +.+.+++|++ |.++..+|.|+|.. .|+-++.+|+++|..+---|.
T Consensus 21 I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g----~~~ea~~~A~~~I~~ie~~~~ 83 (91)
T 2cpq_A 21 VREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYG----ESADAVKKARGFLEFVEDFIQ 83 (91)
T ss_dssp CCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHSCCCCCCC
T ss_pred EChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEE----CCHHHHHHHHHHHHhhheEEe
Confidence 4555555554444444 5566899998 99997779999986 577888999999885544433
No 48
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=61.65 E-value=1 Score=38.57 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=29.1
Q ss_pred ccccccccCCCCccchhhhhhccceeeeecc
Q psy15011 212 KGLLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242 (334)
Q Consensus 212 ~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~ 242 (334)
-|..+++||++|.+.|.||+-|||.|.|.|+
T Consensus 16 ~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGk 46 (140)
T 2bl5_A 16 FNFVGRILGPRGLTAKQLEAETGCKIMVRGK 46 (140)
T ss_dssp SCHHHHHTTTTHHHHHHHHHHHSEEEEEEST
T ss_pred CCeeeEEECCCcchHHHHHHHHCCeEEEecC
Confidence 4678999999999999999999999999996
No 49
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=60.82 E-value=17 Score=27.45 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=39.5
Q ss_pred ccCchhhHhHHhhhhhhHHHHH-hhcceeEEEEccCCe--------EEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 77 VPYEPLKEEYLKECWPLVKNAL-ELHFIKAELDVIEGS--------MTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~I~~~l-e~~~l~i~id~~~g~--------V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
+.+|+.+...+-.-=...-+-| +++++++.++. ++. |+|. .+|..+.+|.++|.++.
T Consensus 18 i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~~~~~er~v~I~-----G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 18 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQNTNVDKPLRII-----GDPYKVQQACEMVMDIL 83 (85)
T ss_dssp EEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCSSTTSCEEEEEE-----ECHHHHHHHHHHHHHHH
T ss_pred EEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCCCCCCceEEEEE-----eCHHHHHHHHHHHHHHh
Confidence 3446665555544444444444 68999999986 455 7776 37889999999999875
No 50
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=60.47 E-value=2 Score=37.26 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.0
Q ss_pred cceeeCCCcchHHHHHHhhceEEE
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYML 199 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~ 199 (334)
-|.|||+.|.|+.||+-|++-.+.
T Consensus 44 ~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHHHHhh
Confidence 679999999999999999966554
No 51
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=59.84 E-value=8.3 Score=29.95 Aligned_cols=59 Identities=14% Similarity=-0.014 Sum_probs=44.8
Q ss_pred cccCchhhHhHHhhhhhhHHH-HHhhcceeEEEEcc---CCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 76 SVPYEPLKEEYLKECWPLVKN-ALELHFIKAELDVI---EGSMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 76 sVpvP~~Re~yLKe~W~~I~~-~le~~~l~i~id~~---~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
.+.+|+....+|-.--...-+ +.++++++|.++.. ++.|+|.. ++..+.+|+++|.++.
T Consensus 20 ~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 20 TVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-----TKEGIEKARHEVLLIS 82 (94)
T ss_dssp EEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred EEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE-----CHHHHHHHHHHHHHHh
Confidence 456788877777776655544 44789999999764 58888865 3889999999999774
No 52
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=54.76 E-value=11 Score=39.07 Aligned_cols=58 Identities=17% Similarity=0.045 Sum_probs=42.9
Q ss_pred ccCchhhHhHHhhhhhhHHHH-HhhcceeEEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 77 VPYEPLKEEYLKECWPLVKNA-LELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~I~~~-le~~~l~i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
+.+|+.+..-+-.-=..+.+. .+++|++|.++ .+|.|.|.. .|+..+.+|.++|++|.
T Consensus 571 ~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-d~G~V~I~~----~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 571 VQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-DEETFSVFA----PTPSAMHEARDFITEIC 629 (630)
T ss_dssp EECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-SSSEEEEEE----SSHHHHHHHHHHTTC--
T ss_pred EEeChhHhheeECCCChhHHHHHHHHCCEEEEc-CCcEEEEEe----CCHHHHHHHHHHHHHHh
Confidence 355666666665555555444 47899999998 689999987 67889999999998763
No 53
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=53.94 E-value=1.7 Score=36.51 Aligned_cols=30 Identities=37% Similarity=0.605 Sum_probs=27.8
Q ss_pred cccccccCCCCccchhhhhhccceeeeecc
Q psy15011 213 GLLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242 (334)
Q Consensus 213 ~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~ 242 (334)
|..+++||++|++.+.|++-|||.|.|.|+
T Consensus 22 n~iG~IIGP~G~tiK~Iq~eTG~kI~Irgk 51 (131)
T 1k1g_A 22 NFVGLLIGPRGNTLKNIEKECNAKIMIRGK 51 (131)
T ss_dssp HHHHHHHCSSSHHHHHHHHHSCCEEEEEES
T ss_pred ceeeeEECCCcHHHHHHHHHHCCeEEecCC
Confidence 467899999999999999999999999984
No 54
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=53.04 E-value=2.2 Score=31.44 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.6
Q ss_pred ccccccccCCCCccchhhhhhccceeeeecc
Q psy15011 212 KGLLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242 (334)
Q Consensus 212 ~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~ 242 (334)
.+.-+++||.+|++.+.|++.|||.|.|...
T Consensus 11 ~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~ 41 (76)
T 1dtj_A 11 ENLVGAILGKGGKTLVEYQELTGARIQISKK 41 (76)
T ss_dssp TTTHHHHHCSTTHHHHHHHHHHCCEEEECCT
T ss_pred hHHcceEECCCchHHHHHHHHhCCEEEECcC
Confidence 3456889999999999999999999999864
No 55
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=52.22 E-value=2.8 Score=38.42 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=52.1
Q ss_pred cceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEEEEe---cCCcc
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAAL---GPHKG 252 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV~ii---G~~~~ 252 (334)
-|+|||++|.|+.||+.||+..+.- -+|..+.++ +.|..
T Consensus 103 ~g~LIGk~G~tLdALQyL~~~~vn~--------------------------------------~~~~~~rv~LDi~~YR~ 144 (225)
T 3gku_A 103 MGILIGKRGQTLDSLQYLVSLVVNK--------------------------------------SSSDYIRVKLDTENYRE 144 (225)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHHHH--------------------------------------TCSSCCEEEEESTTHHH
T ss_pred cceeecCCCeEhHHHHHHHHHHHHh--------------------------------------cCCCceEEEEecchHHH
Confidence 6899999999999999999976650 012222222 22221
Q ss_pred ------HHHHHHHHHHHhcC-----CCchhHHHHHHHHHhhhcCCccccCC
Q psy15011 253 ------LLQVRRIVEDTMKN-----IHPIYNIKALMIKRELAKDPKLKNEN 292 (334)
Q Consensus 253 ------l~~ar~av~~li~g-----~hpiy~ik~l~~kr~l~~~~~~~~~~ 292 (334)
...|+++++..... ..|+-.-=+=+|-.-|+.+|.+..+|
T Consensus 145 rR~e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~S 195 (225)
T 3gku_A 145 RRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQNDKYVVTRS 195 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHHHHHccCCCcEEEE
Confidence 24577777777743 23655556678888899998887654
No 56
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.12 E-value=39 Score=27.82 Aligned_cols=44 Identities=11% Similarity=-0.084 Sum_probs=34.0
Q ss_pred hHHHHHhhcceeEEEEc---------------cCCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q psy15011 93 LVKNALELHFIKAELDV---------------IEGSMTVFTTRKTWDPYIIIKARDMIKLLSR 140 (334)
Q Consensus 93 ~I~~~le~~~l~i~id~---------------~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~r 140 (334)
.|+.+.++++++|.++- ..+.|.|.. .|+-.+.+|.++|..|..
T Consensus 40 tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a----~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 40 YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISH----PKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp HHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEE----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEe----CCHHHHHHHHHHHHHHhh
Confidence 34555679999999972 346788876 688899999999998754
No 57
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=44.02 E-value=19 Score=28.33 Aligned_cols=59 Identities=8% Similarity=-0.065 Sum_probs=42.4
Q ss_pred ccCchhhHhHHhhhhhhHHHHH-hhcceeEEEEc-------cCCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q psy15011 77 VPYEPLKEEYLKECWPLVKNAL-ELHFIKAELDV-------IEGSMTVFTTRKTWDPYIIIKARDMIKLLSR 140 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~I~~~l-e~~~l~i~id~-------~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~r 140 (334)
+.+|+.....|-.--...-+-| ++++++|.++. .++.|+|..+ +-.+.+|.++|.++..
T Consensus 19 i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-----~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 19 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-----QKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-----HHHHHHHHHHHHHHHH
T ss_pred EEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-----HHHHHHHHHHHHHHHh
Confidence 4557776666666555554444 78999999986 3688888763 3378999999998754
No 58
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=42.24 E-value=5.6 Score=29.35 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=25.9
Q ss_pred ccccccCCCCccchhhhhhccceeeeecc
Q psy15011 214 LLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242 (334)
Q Consensus 214 ik~~~~g~~g~~~~~~e~~~~~~~~V~g~ 242 (334)
.-+++||.+|+..+.|++-|||.|.+...
T Consensus 15 ~ig~iIG~gG~~I~~I~e~tg~~I~i~~~ 43 (71)
T 1vig_A 15 FHRHLIGKSGANINRIKDQYKVSVRIPPD 43 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHTCCEEECCCC
T ss_pred HhhhhcCCCCccHHHHHHHHCCEEEECCC
Confidence 34679999999999999999999999864
No 59
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.94 E-value=6 Score=31.05 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=27.7
Q ss_pred ccccccccCCCCccchhhhhhccceeeeecc
Q psy15011 212 KGLLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242 (334)
Q Consensus 212 ~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~ 242 (334)
....+++||.+|++.+.|++-|||.|.|.+.
T Consensus 25 ~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~ 55 (95)
T 2ctm_A 25 HRVHARIIGARGKAIRKIMDEFKVDIRFPQS 55 (95)
T ss_dssp TTTHHHHHCSSSCHHHHHHHHHTCEEECCCT
T ss_pred HHHccccCCCCcchHHHHHHHHCCeEEecCC
Confidence 4455789999999999999999999999876
No 60
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=37.42 E-value=11 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.3
Q ss_pred ccccccccCCCCccchhhhhhccceeeeeccE
Q psy15011 212 KGLLQSNIGPNGCTLKSIELLTNCYMLVQGQT 243 (334)
Q Consensus 212 ~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~t 243 (334)
.+.-+++||.+|++.+.|++.|||.|.|....
T Consensus 15 ~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~ 46 (107)
T 2hh2_A 15 THKCGLVIGRGGENVKAINQQTGAFVEISRQL 46 (107)
T ss_dssp GGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC
T ss_pred HHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc
Confidence 34568999999999999999999999998863
No 61
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=36.15 E-value=7.6 Score=30.09 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=27.3
Q ss_pred ccccccccCCCCccchhhhhhccceeeeecc
Q psy15011 212 KGLLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242 (334)
Q Consensus 212 ~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~ 242 (334)
...-+++||.+|++.+.|++.|||.|.|...
T Consensus 23 ~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~ 53 (94)
T 1x4m_A 23 ASKAGLVIGKGGETIKQLQERAGVKMVMIQD 53 (94)
T ss_dssp HHHHHHHSCSSSSHHHHHHHHHTSEEEECCS
T ss_pred hhhcceEECCCCHHHHHHHHHHCCeEEecCC
Confidence 3455789999999999999999999999874
No 62
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=35.39 E-value=7.8 Score=29.15 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=27.8
Q ss_pred ccccccccCCCCccchhhhhhccceeeeecc
Q psy15011 212 KGLLQSNIGPNGCTLKSIELLTNCYMLVQGQ 242 (334)
Q Consensus 212 ~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~ 242 (334)
...-+++||.+|+..+.|++.|||.|.|...
T Consensus 15 ~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~ 45 (82)
T 1zzk_A 15 KDLAGSIIGKGGQRIKQIRHESGASIKIDEP 45 (82)
T ss_dssp TTTGGGGTCGGGHHHHHHHHHHCCEEEECCT
T ss_pred hHhcCeeECCCchHHHHHHHHHCCEEEEcCC
Confidence 4566899999999999999999999999864
No 63
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=33.26 E-value=82 Score=23.57 Aligned_cols=59 Identities=10% Similarity=-0.056 Sum_probs=40.9
Q ss_pred ccCchhhHhHHhhhhhhHHHHH-hhcceeEEEEcc--------CCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q psy15011 77 VPYEPLKEEYLKECWPLVKNAL-ELHFIKAELDVI--------EGSMTVFTTRKTWDPYIIIKARDMIKLLSR 140 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~I~~~l-e~~~l~i~id~~--------~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~r 140 (334)
+.+|+.....|-.--...-+-| +.+|+.|.++.. ++.|+|.. +|-.+.+|.++|.++..
T Consensus 7 i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 7 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRVT 74 (87)
T ss_dssp EEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred EEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHh
Confidence 4456666666655554444444 689999999864 24777754 47899999999998753
No 64
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.92 E-value=10 Score=29.12 Aligned_cols=29 Identities=31% Similarity=0.626 Sum_probs=25.9
Q ss_pred cccccccCCCCccchhhhhhccceeeeec
Q psy15011 213 GLLQSNIGPNGCTLKSIELLTNCYMLVQG 241 (334)
Q Consensus 213 ~ik~~~~g~~g~~~~~~e~~~~~~~~V~g 241 (334)
+.-+.+||.+|++.+.|++-|||+|.|..
T Consensus 19 ~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~ 47 (83)
T 2dgr_A 19 RVVGLVVGPKGATIKRIQQRTHTYIVTPG 47 (83)
T ss_dssp HHHHHHHTTTTSSHHHHHHHTTCEEECCC
T ss_pred HHeeeeECCCchHHHHHHHHhCCeEEecC
Confidence 45567999999999999999999999975
No 65
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=30.92 E-value=12 Score=32.13 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=44.2
Q ss_pred cceeeCCCcchHHHHHHhhceEEEec----------------------------ceeeeeecCCccccccccCCCCccch
Q psy15011 176 RQRLIGPNGCTLKSIELLTNCYMLVQ----------------------------GQTVAALGPHKGLLQSNIGPNGCTLK 227 (334)
Q Consensus 176 rGRIIG~~GkTkkaIE~lT~~~I~V~----------------------------gktV~IIG~~~~ik~~~~g~~g~~~~ 227 (334)
.|..||++|..-++|++..|-+|-|= |.+.+.+==.+.=....||.+|.--+
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~~s~d~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~Nvr 126 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVEYSSDLERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVK 126 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEECCSSHHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHH
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEEcCCCHHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHH
Confidence 78999999999999999888887321 22222222233345567777777777
Q ss_pred hhhhhccceeeee
Q psy15011 228 SIELLTNCYMLVQ 240 (334)
Q Consensus 228 ~~e~~~~~~~~V~ 240 (334)
-...|||.++-|.
T Consensus 127 La~~Ltg~~idI~ 139 (144)
T 2cxc_A 127 RARLVLSKLFGVE 139 (144)
T ss_dssp HHHHHHHHHHCEE
T ss_pred HHHHHhCCeeCce
Confidence 7777777776554
No 66
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=30.74 E-value=52 Score=25.98 Aligned_cols=63 Identities=6% Similarity=-0.046 Sum_probs=43.2
Q ss_pred cccCchhhHhHHhhhhhhH-HHHHhhcceeEEEEccC---CeEEEEcCCCCCChhHHHhHHHHHHHHhcCCC
Q psy15011 76 SVPYEPLKEEYLKECWPLV-KNALELHFIKAELDVIE---GSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 143 (334)
Q Consensus 76 sVpvP~~Re~yLKe~W~~I-~~~le~~~l~i~id~~~---g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~ 143 (334)
.+.+|+....+|-.--... +.+.++++++|.++-.. +.|+|..+ +..+.+|+++|..+..-+.
T Consensus 20 ~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-----~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 20 EVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-----AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-----HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-----HHHHHHHHHHHHHHHhhHH
Confidence 3455666666665555444 45558999999987532 38888763 4689999999998865433
No 67
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=30.28 E-value=98 Score=24.56 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=37.7
Q ss_pred ccCchhhHhHHhhhhhh-HHHHHhhcceeEEEEccCC-----eEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 77 VPYEPLKEEYLKECWPL-VKNALELHFIKAELDVIEG-----SMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~-I~~~le~~~l~i~id~~~g-----~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
+.||+.....|---=-. |+.+-++++++|.++...+ .|+|.. ++-.+.+|+++|..+.
T Consensus 15 i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-----~~e~v~~A~~~I~~ii 78 (106)
T 2hh3_A 15 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-----PPDRCEHAARIINDLL 78 (106)
T ss_dssp EEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEES-----SHHHHHHHHHHHHHHH
T ss_pred EEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 44555555444333333 3444578999999976443 577764 3778999999999764
No 68
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=29.56 E-value=65 Score=23.88 Aligned_cols=59 Identities=7% Similarity=-0.083 Sum_probs=38.5
Q ss_pred ccCchhhHhHHhhhhhh-HHHHHhhcceeEEEEcc-----CCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q psy15011 77 VPYEPLKEEYLKECWPL-VKNALELHFIKAELDVI-----EGSMTVFTTRKTWDPYIIIKARDMIKLLSR 140 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~-I~~~le~~~l~i~id~~-----~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~r 140 (334)
+.+|+.....|-.-=.. |+.+-++++.+|.++.. ++.|+|.. +|..+.+|.++|.++..
T Consensus 10 i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 10 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG-----SAASISLAQYLINARLS 74 (82)
T ss_dssp EEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHTC
T ss_pred EEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHH
Confidence 34455554444333333 34444789999999763 55788864 46899999999997743
No 69
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=29.29 E-value=72 Score=23.23 Aligned_cols=58 Identities=7% Similarity=-0.068 Sum_probs=39.0
Q ss_pred ccCchhhHhHHhhhhhhH-HHHHhhcceeEEEEc-----cCCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 77 VPYEPLKEEYLKECWPLV-KNALELHFIKAELDV-----IEGSMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~I-~~~le~~~l~i~id~-----~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
+.+|+.....|-.-=... ..+-+.+|.++.++. .++.|+|.. +|..+.+|.++|..+.
T Consensus 9 i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 72 (76)
T 2p2r_A 9 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG-----SAASISLAQYLINVRL 72 (76)
T ss_dssp EEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred EEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 344555555544333333 344478999999886 367888864 4889999999998764
No 70
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.86 E-value=86 Score=24.44 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=40.4
Q ss_pred ccCchhhHhHHhhhhhhH-HHHHhhc-ceeEEEEccCC----eEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 77 VPYEPLKEEYLKECWPLV-KNALELH-FIKAELDVIEG----SMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~I-~~~le~~-~l~i~id~~~g----~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
+.+|+....+|-.--... ..+.+++ +++|.++- +| .|+|... +. .+.+|++.|..+.
T Consensus 21 i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~-~g~~~~~V~I~G~----~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 21 VSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV-EGSGSDTVVIRGP----SS-DVEKAKKQLLHLA 83 (95)
T ss_dssp EECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC-TTTTCCEEEEESC----HH-HHHHHHHHHHHHH
T ss_pred EEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC-CCCCcceEEEEcC----HH-HHHHHHHHHHHHH
Confidence 445666666666666444 4555889 89998865 45 8999863 33 8899999999774
No 71
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=27.66 E-value=64 Score=24.42 Aligned_cols=58 Identities=10% Similarity=-0.104 Sum_probs=40.3
Q ss_pred ccCchhhHhHHhhhhhhH-HHHHhhcceeEEEEcc-----CCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 77 VPYEPLKEEYLKECWPLV-KNALELHFIKAELDVI-----EGSMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~~I-~~~le~~~l~i~id~~-----~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
+.+|+.....|-.-=... +.+-++++++|.++.. ++.|+|.. .|-.+.+|+++|..+.
T Consensus 18 i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G-----~~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 18 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSV 81 (89)
T ss_dssp EEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHH
T ss_pred EEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEc-----CHHHHHHHHHHHHHHH
Confidence 455666666665444333 4444789999999863 57788875 3678999999998764
No 72
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=26.70 E-value=78 Score=24.14 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=37.9
Q ss_pred ccCchhhHhHHhhhhh-hHHHHHhhcceeEEEEccC-----CeEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 77 VPYEPLKEEYLKECWP-LVKNALELHFIKAELDVIE-----GSMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 77 VpvP~~Re~yLKe~W~-~I~~~le~~~l~i~id~~~-----g~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
+.+|+.....|---=. .|+.+-++++++|.++... +.|+|.. +|-.+.+|+++|.++.
T Consensus 19 i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-----~~e~v~~A~~~I~~~i 82 (92)
T 1x4n_A 19 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTG-----TPESVQSAKRLLDQIV 82 (92)
T ss_dssp EEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred EEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 3445554444433332 3344457899999998752 4777764 3778999999999764
No 73
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=23.97 E-value=56 Score=23.86 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCHHHHHHhhh
Q psy15011 132 RDMIKLLSRSVPYEQAVRVLQ 152 (334)
Q Consensus 132 ~D~IkAi~rGF~~e~AlkLL~ 152 (334)
..+-++++.||+.++|++.|.
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 467789999999999999887
No 74
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=22.46 E-value=20 Score=27.15 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=8.9
Q ss_pred eccEEEEecCCcc
Q psy15011 240 QGQTVAALGPHKG 252 (334)
Q Consensus 240 ~g~tV~iiG~~~~ 252 (334)
.|.||.+||..+.
T Consensus 73 ~g~~l~l~~~~~~ 85 (90)
T 1v5t_A 73 PNTKIMMMGTRES 85 (90)
T ss_dssp TTEEEEEECCCSS
T ss_pred CCCEEEEEecCcc
Confidence 5677777776653
No 75
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=22.23 E-value=41 Score=31.76 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=32.1
Q ss_pred cchHHHHHHhhceEEEecceeeeeecCCccccccccCC--CCccchhhhhhccceeeeeccEEEEecCCcc
Q psy15011 184 GCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGP--NGCTLKSIELLTNCYMLVQGQTVAALGPHKG 252 (334)
Q Consensus 184 GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~--~g~~~~~~e~~~~~~~~V~g~tV~iiG~~~~ 252 (334)
+.-|..|+.+||+-.. +|++||. +|+-.+.=..|+...| -.|.||..||+.+.
T Consensus 28 ~~lK~~I~~~tgVpp~---------------~QkLi~~k~~Gk~l~D~~~L~~~~i-k~g~~l~L~gs~~~ 82 (320)
T 3shq_A 28 EVLRHEIFRKTQVRPE---------------RQKLLNLKYKGKTAADNVKISALEL-KPNFKLMMVGSTEA 82 (320)
T ss_dssp HHHHHHHHHHHCCCGG---------------GCEETTCBSSSSBCCTTSBTTSSCC-C--CEEEEECCCC-
T ss_pred HHHHHHHHHHHCcCHH---------------HeEEeecccCCcccCccccHHHcCC-CCCCEEEEEccchh
Confidence 3456777888876555 6777763 4655554334444444 36889999998875
No 76
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.45 E-value=1.6e+02 Score=22.84 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=38.1
Q ss_pred cccCchhhHhHHhhhhh-hHHHHHhhcceeEEEEccC------CeEEEEcCCCCCChhHHHhHHHHHHHHh
Q psy15011 76 SVPYEPLKEEYLKECWP-LVKNALELHFIKAELDVIE------GSMTVFTTRKTWDPYIIIKARDMIKLLS 139 (334)
Q Consensus 76 sVpvP~~Re~yLKe~W~-~I~~~le~~~l~i~id~~~------g~V~V~tt~kT~Dp~~i~KA~D~IkAi~ 139 (334)
.+.||+.....|-.-=. .|+.+.++++++|.+.-.. ..|+|..+ +..+.+|+++|..+.
T Consensus 20 ~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-----~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 20 SVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-----EKNTEAARDAILRIV 85 (97)
T ss_dssp EEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-----HHHHHHHHHHHHHHH
T ss_pred EEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-----HHHHHHHHHHHHHHH
Confidence 34455544444433322 3445557899999987643 27888752 668999999999774
No 77
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=20.29 E-value=2.1e+02 Score=19.33 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.2
Q ss_pred hhhhhHHHHHh-hcceeEEEEccCCeEEEEc
Q psy15011 89 ECWPLVKNALE-LHFIKAELDVIEGSMTVFT 118 (334)
Q Consensus 89 e~W~~I~~~le-~~~l~i~id~~~g~V~V~t 118 (334)
.|-..|.++|. .-|+.+++|+.++.++|..
T Consensus 14 ~C~~~i~~~l~~~~gV~v~v~~~~~~~~v~~ 44 (68)
T 3iwl_A 14 GCAEAVSRVLNKLGGVKYDIDLPNKKVCIES 44 (68)
T ss_dssp HHHHHHHHHHHHHCSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcCCCEEEEEe
Confidence 35667888885 4577899999999999985
Done!