RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15011
(334 letters)
>1tua_A Hypothetical protein APE0754; structural genomics, protein
structure initiative, MCSG, four layers alpha-beta
sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1
d.51.1.1
Length = 191
Score = 154 bits (391), Expect = 2e-46
Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 44/222 (19%)
Query: 77 VPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMI 135
V +P + + VK + +D + V + P ++KA +++
Sbjct: 8 VKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVV 67
Query: 136 KLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLT 194
K +S P E+A R+L++D ++ + +V + Q +KR + R+
Sbjct: 68 KAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRI--------------- 112
Query: 195 NCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254
IG G ++IE +T+ Y+ V VA +G ++ +
Sbjct: 113 ------------------------IGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAM 148
Query: 255 QVRRIVEDTMK-NIHPIYNIKALMIKRELAKDPKLKNENWER 295
++ +E + +H I RE+ + +L + W R
Sbjct: 149 AAKQAIEMLAEGRMHSTVYRHLERIMREIKRRERL--KMWAR 188
Score = 57.3 bits (138), Expect = 4e-10
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 16/169 (9%)
Query: 20 EYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVP 78
+ VK + +D + V + P ++KA +++K +S P
Sbjct: 16 GAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75
Query: 79 YEP----LKEEYLKEC--WPLVKNALELHFIKAELDVI-EGSMTVFTTRKTWDPYIIIKA 131
E L+E+ + V + H + + +I EG T + D YI +
Sbjct: 76 PEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE 135
Query: 132 RDMIKLLSRSVPYEQAVRVLQDDISCDIIK--IGNLVQNKQRFVKRRQR 178
+ ++ A + + + + + + V + R +
Sbjct: 136 Y-EVAIIGDYERAMAAKQAI-----EMLAEGRMHSTVYRHLERIMREIK 178
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing
factor, RNA binding protein; 2.30A {Pyrococcus
horikoshii} PDB: 3aev_B
Length = 219
Score = 144 bits (363), Expect = 7e-42
Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 45/224 (20%)
Query: 74 SRSVPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKAR 132
V + L K +E K +D G + + +T++T DP + KAR
Sbjct: 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKAR 94
Query: 133 DMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQR--FVKRRQRLIGPNGCTLKSI 190
D++ + R E+A R+L + +II + +++ ++ + R R+
Sbjct: 95 DIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRI----------- 143
Query: 191 ELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPH 250
IG G T + IE ++ + V G+TVA +G
Sbjct: 144 ----------------------------IGRKGRTRQIIEEMSGASVSVYGKTVAIIGNP 175
Query: 251 KGLLQVRRIVEDTMKNIHPIYNIKALMIK--RELAKDPKLKNEN 292
+ + +E P ++ + + ++L + + EN
Sbjct: 176 IQIEIAKTAIEKLA-RGSPHGSVYRYLERRKKDLELEGAMYYEN 218
Score = 58.2 bits (140), Expect = 4e-10
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 21 YLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPY 79
L K +E K +D G + + +T++T DP + KARD++ + R
Sbjct: 47 VLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSP 106
Query: 80 EP----LKEEYLKE---CWPLVKNALELHFIKAELDVI-EGSMTVFTTRKTWDPYIIIKA 131
E L E E ++ + + +I T + + +
Sbjct: 107 ERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG 166
Query: 132 RDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRL 179
+ + ++ + E A ++ G+ V K+ L
Sbjct: 167 K-TVAIIGNPIQIEIAKTAIEKLA--RGSPHGS-VYRYLERRKKDLEL 210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 9e-09
Identities = 51/328 (15%), Positives = 103/328 (31%), Gaps = 116/328 (35%)
Query: 17 NPHEYLKECWPLVKNALELH-----FIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIK 71
N +Y +E L +L+ + + +++ + + ++++
Sbjct: 165 NTDDYFEE---LR----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 72 LLSR--SVPYEPLKEEYLKEC---WPLVKNALEL-HFIKA---------EL-DVIEG--- 112
L + P ++YL PL+ ++L H++ EL ++G
Sbjct: 218 WLENPSNTP----DKDYLLSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 113 ------SMTVFTTRKTWDPYIIIKARDMIKLL----SRS---VP-YEQAVRVLQDDISCD 158
+ +W+ + + R I +L R P +L+D +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--- 328
Query: 159 IIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYML-VQGQTVAALGPHKGLLQS 217
N + S ML + T + + + ++
Sbjct: 329 -----------------------ENNEGVPS-------PMLSISNLTQEQVQDY--VNKT 356
Query: 218 N-IGPNGCTLKSIEL-LTNCY-MLVQGQTVAALGPHKGL----LQVRRIVEDTMKNIHPI 270
N P G K +E+ L N LV V+ GP + L L +R+ + +
Sbjct: 357 NSHLPAG---KQVEISLVNGAKNLV----VS--GPPQSLYGLNLTLRKAKAPSGLDQS-- 405
Query: 271 YNIKALMIKRELAKDPKLKNENWERFLP 298
+ +R+ K N RFLP
Sbjct: 406 ---RIPFSERK----LKFSN----RFLP 422
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 42/324 (12%), Positives = 92/324 (28%), Gaps = 92/324 (28%)
Query: 8 KIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKAR 67
K + + +D P E L P L +I S+ WD + +
Sbjct: 309 KYLDCRPQDLPREVLT-TNPRR------------LSIIAESIRDGLAT--WDNWKHVNCD 353
Query: 68 DMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDV-I-EGSMTVFTTRKTWDP 125
+ ++ S+ L+ ++ + + L + F I +++ W
Sbjct: 354 KLTTIIESSL--NVLEPAEYRKMF----DRLSV-FPP---SAHIPTILLSLI-----WFD 398
Query: 126 YIIIKARDMI-KLLSRSV----PYEQAVRV--LQDDISCDIIKIGNLVQNKQRFVKRRQR 178
I ++ KL S+ P E + + + ++ K+ N + V
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV---KLENEYALHRSIVDHYNI 455
Query: 179 LIG--PNGCTLKSIELLTNCYMLVQGQTVAALGPH-KGLLQSNIGPNGCTLKSIELLTNC 235
+ ++ + +G H K + + + L
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSH----------IGHHLKNIEHP---------ERMTLFRMV 496
Query: 236 YM----LVQ-----GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYN--IKALMIKRELAK 284
++ L Q A G LQ + + + + P Y + A++
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL------- 549
Query: 285 DPKLKNENWERFLPNFKSKTLSKR 308
FLP + + +
Sbjct: 550 ----------DFLPKIEENLICSK 563
Score = 36.8 bits (84), Expect = 0.009
Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 57/189 (30%)
Query: 125 PYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNG 184
I + ++ L +S PYE + VL + VQN +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVL-LN-----------VQNAK-------------- 257
Query: 185 CTLKSIELLTNCYMLV----QGQTVAALGPHKGLLQSNIGPNGCTL-KSIELLTNCYMLV 239
+ L +C +L+ + T + + T + LL
Sbjct: 258 -AWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--- 311
Query: 240 QGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKAL-MIKRELAKDPKLKNENWERFLP 298
L P + + +P L +I + +D +NW+
Sbjct: 312 -DCRPQDL-PRE------------VLTTNPR----RLSIIAESI-RDGLATWDNWKHVNC 352
Query: 299 NFKSKTLSK 307
+ + +
Sbjct: 353 DKLTTIIES 361
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA
recognition, complex E, KH domain, QUA2 homology; NMR
{Homo sapiens} SCOP: d.51.1.1
Length = 131
Score = 33.7 bits (77), Expect = 0.026
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
LIGP G TLK+IE N ++++G+
Sbjct: 24 VGLLIGPRGNTLKNIEKECNAKIMIRGK 51
Score = 30.2 bits (68), Expect = 0.35
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 219 IGPNGCTLKSIELLTNCYMLVQGQ 242
IGP G TLK+IE N ++++G+
Sbjct: 28 IGPRGNTLKNIEKECNAKIMIRGK 51
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA
binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Length = 140
Score = 33.4 bits (76), Expect = 0.034
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 176 RQRLIGPNGCTLKSIELLTNCYMLVQG 202
R++GP G T K +E T C ++V+G
Sbjct: 19 VGRILGPRGLTAKQLEAETGCKIMVRG 45
Score = 29.9 bits (67), Expect = 0.53
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 219 IGPNGCTLKSIELLTNCYMLVQG 241
+GP G T K +E T C ++V+G
Sbjct: 23 LGPRGLTAKQLEAETGCKIMVRG 45
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 32.2 bits (73), Expect = 0.080
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 176 RQRLIGPNGCTLKSIELLTNCYMLVQGQ 203
++++ GP L+ I++ T + ++G+
Sbjct: 30 KEKVEGPGCSYLQHIQIETGAKVFLRGK 57
>2dgr_A Ring finger and KH domain-containing protein 1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 83
Score = 29.1 bits (65), Expect = 0.49
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 179 LIGPNGCTLKSIELLTNCYMLVQGQ 203
++GP G T+K I+ T+ Y++ G+
Sbjct: 24 VVGPKGATIKRIQQRTHTYIVTPGR 48
Score = 28.8 bits (64), Expect = 0.70
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 219 IGPNGCTLKSIELLTNCYMLVQGQ 242
+GP G T+K I+ T+ Y++ G+
Sbjct: 25 VGPKGATIKRIQQRTHTYIVTPGR 48
>1x4m_A FAR upstream element binding protein 1; KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.51.1.1
Length = 94
Score = 27.8 bits (62), Expect = 1.7
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQ 201
+IG G T+K ++ M++
Sbjct: 28 LVIGKGGETIKQLQERAGVKMVMI 51
Score = 26.6 bits (59), Expect = 4.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 219 IGPNGCTLKSIELLTNCYMLVQ 240
IG G T+K ++ M++
Sbjct: 30 IGKGGETIKQLQERAGVKMVMI 51
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 94
Score = 27.8 bits (62), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 178 RLIGPNGCTLKSIELLTNCYM 198
+IG NG L+ +EL T +
Sbjct: 30 FVIGKNGEKLQDLELKTATKI 50
Score = 27.0 bits (60), Expect = 3.5
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 219 IGPNGCTLKSIELLTNCYMLV-----QGQTVAALGPHKGLLQVRRIVEDTMK 265
IG NG L+ +EL T + + + G +G+ + R V
Sbjct: 32 IGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISA 83
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo
sapiens}
Length = 85
Score = 27.3 bits (61), Expect = 1.8
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLV 200
+IG G T+K ++ M++
Sbjct: 27 LVIGKGGETIKQLQERAGVKMIL 49
Score = 26.2 bits (58), Expect = 5.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 219 IGPNGCTLKSIELLTNCYMLV 239
IG G T+K ++ M++
Sbjct: 29 IGKGGETIKQLQERAGVKMIL 49
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 29.3 bits (66), Expect = 1.9
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 266 NIHPIYNIKAL-MIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE 319
++HP+ +AL +I R P+LK++ W + +F L K +R +
Sbjct: 236 DMHPM---RALFLIPRN--PAPRLKSKKWSKKFQSFIESCL--VKNHSQRPATEQ 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 39 KAELDVIEGSMTVFTTRKTWD--PYIIIKA 66
K L ++ S+ ++ D P + IKA
Sbjct: 19 KQALKKLQASLKLYAD----DSAPALAIKA 44
Score = 28.4 bits (62), Expect = 2.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 104 KAELDVIEGSMTVFTTRKTWD--PYIIIKA 131
K L ++ S+ ++ D P + IKA
Sbjct: 19 KQALKKLQASLKLYAD----DSAPALAIKA 44
Score = 27.6 bits (60), Expect = 3.5
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 19/45 (42%)
Query: 64 IKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELD 108
+K KL + Y + P AL IKA ++
Sbjct: 22 LK-----KLQASLKLYAD-------DSAP----ALA---IKATME 47
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 28.9 bits (65), Expect = 2.5
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 266 NIHPIYNIKAL-MIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSE 319
N++ + AL I + + P L++ +W + NF L +K+P+ R T
Sbjct: 255 NMNAM---SALYHIAQN--ESPALQSGHWSEYFRNFVDSCL--QKIPQDRPTSEV 302
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 27.4 bits (61), Expect = 2.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 178 RLIGPNGCTLKSIELLTNCY 197
R+IG G ++ I
Sbjct: 30 RIIGARGKAIRKIMDEFKVD 49
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA
binding protein, KH domain, KSRP, posttranscriptional
regulation, mRNA decay; NMR {Homo sapiens}
Length = 164
Score = 28.2 bits (63), Expect = 2.6
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQ 201
+IG +G +K I+ + +
Sbjct: 104 VVIGRSGEMIKKIQNDAGVRIQFK 127
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens}
SCOP: d.51.1.1 PDB: 1vih_A
Length = 71
Score = 26.2 bits (58), Expect = 3.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 178 RLIGPNGCTLKSIELLTNCYM 198
LIG +G + I+ +
Sbjct: 18 HLIGKSGANINRIKDQYKVSV 38
Score = 26.2 bits (58), Expect = 4.2
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 219 IGPNGCTLKSIELLTNCYMLV-----QGQTVAALGPHKGLLQVRRIVED 262
IG +G + I+ + + + + G +G+ Q +R + +
Sbjct: 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus,
high-throughput assay, protein; HET: PGE; 1.85A {Dengue
virus} PDB: 2j7w_A*
Length = 635
Score = 28.1 bits (62), Expect = 5.4
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 15 EDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYI---IIKARDMI 70
E+NP K V + ++ D GS+ T+R TW I I + R +I
Sbjct: 554 EENPWMEDKTP---VTTWENVPYLGKREDQWCGSLIGLTSRATWAQNIPTAIQQVRSLI 609
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH
domain, hairpin, RNA-binding protein complex; HET: 5BU;
1.94A {Homo sapiens} PDB: 2ann_A*
Length = 178
Score = 27.1 bits (60), Expect = 6.0
Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 25/137 (18%)
Query: 153 DDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
+ ++ I ++ + V + + + T + + ++V T +
Sbjct: 63 EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLI---- 118
Query: 213 GLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVE--DTMKNIHPI 270
IG G T+K+I + ++ + + + R+V +
Sbjct: 119 ------IGKGGATVKAIMEQSGAWVQLSQKPDGINLQN-------RVVTVSGEPEQNR-- 163
Query: 271 YNIKAL-MIKRELAKDP 286
KA+ +I +++ +DP
Sbjct: 164 ---KAVELIIQKIQEDP 177
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain,
cell projection, cytoplasm, nucleus, phosphoprotein,
translation regulation; 2.75A {Homo sapiens}
Length = 163
Score = 26.7 bits (59), Expect = 7.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQGQ 203
R+IG G T+ ++ LT ++V
Sbjct: 98 RVIGKGGKTVNELQNLTAAEVVVPRD 123
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250,
UDP, putative UDP-glucose pyrophosphorylase; HET: UPG
U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4
c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Length = 469
Score = 27.4 bits (60), Expect = 7.7
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 32 ALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIK----ARDMIKLLSRSVPYEPLKEEYL 87
+ L IK ++ M + K D +++ A I+ ++ + +L
Sbjct: 298 WVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFL 357
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding,
DNA-binding, nucleus, phosph ribonucleoprotein,
RNA-binding, RNA binding protein; NMR {Homo sapiens}
Length = 160
Score = 26.3 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQGQT 204
LIG GC +K I T + V G
Sbjct: 102 SLIGKGGCKIKEIRESTGAQVQVAGDM 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,080,464
Number of extensions: 299914
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 47
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)