RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15011
(334 letters)
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 70.5 bits (173), Expect = 6e-16
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 45/145 (31%)
Query: 154 DISCDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
D ++ + +V + Q +KR + R+IG
Sbjct: 1 DQILVVVDLKQVVGDSQNHLKRIKGRIIG------------------------------- 29
Query: 213 GLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHP--I 270
G ++IE +T+ Y+ V VA +G ++ + ++ +E + +
Sbjct: 30 --------EGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTV 81
Query: 271 YNIKALMIKRELAKDPKLKNENWER 295
Y I RE+ + +L + W R
Sbjct: 82 YRHLE-RIMREIKRRERL--KMWAR 103
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 34.0 bits (78), Expect = 0.007
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 176 RQRLIGPNGCTLKSIELLTNCYMLVQG 202
R++GP G T K +E T C ++V+G
Sbjct: 19 VGRILGPRGLTAKQLEAETGCKIMVRG 45
Score = 30.2 bits (68), Expect = 0.14
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 219 IGPNGCTLKSIELLTNCYMLVQG 241
+GP G T K +E T C ++V+G
Sbjct: 23 LGPRGLTAKQLEAETGCKIMVRG 45
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 32.9 bits (75), Expect = 0.018
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 176 RQRLIGPNGCTLKSIELLTNCYMLVQG 202
LIGP G TLK+IE N ++++G
Sbjct: 20 VGLLIGPRGNTLKNIEKECNAKIMIRG 46
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 30.9 bits (70), Expect = 0.037
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQD 153
+D + V + P ++KA +++K +S P E+A R+L++
Sbjct: 35 VITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEE 84
Score = 24.4 bits (53), Expect = 8.5
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 39 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYE 80
+D + V + P ++KA +++K +S P E
Sbjct: 35 VITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPE 76
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 29.7 bits (67), Expect = 0.088
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 173 VKRRQRLIGPNGCTLKSIELLTNCYMLVQ 201
+ R+IG N +++ + C + V
Sbjct: 9 PVKVPRVIGKNKSMYETLTSKSGCSIFVA 37
Score = 26.2 bits (58), Expect = 1.5
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 219 IGPNGCTLKSIELLTNCYMLV-QGQTVAALGPHK-GLLQVRRIVEDTMKNIH 268
IG N +++ + C + V + A P + + + H
Sbjct: 16 IGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESH 67
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 26.2 bits (58), Expect = 1.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 178 RLIGPNGCTLKSIELLTNC 196
R+IG LK++E T C
Sbjct: 14 RVIGRKMSMLKTLEEKTEC 32
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 25.0 bits (55), Expect = 2.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 173 VKRRQRLIGPNGCTLKSIELLTNC 196
V + +IGP + I+ T
Sbjct: 11 VDKIGEVIGPKRQMINQIQEDTGA 34
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 25.2 bits (55), Expect = 3.4
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQ 201
+IG G + I+ + C + +
Sbjct: 21 FIIGRGGEQISRIQQESGCKIQIA 44
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 25.1 bits (55), Expect = 3.8
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYM 198
K + LIG +G + I+ +
Sbjct: 14 KFHRHLIGKSGANINRIKDQYKVSV 38
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 24.8 bits (54), Expect = 4.7
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQGQ 203
++G G TL + LT + + +
Sbjct: 16 AILGKGGKTLVEYQELTGARIQISKK 41
Score = 24.0 bits (52), Expect = 7.9
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 219 IGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVR 257
+G G TL + LT + + + G + +
Sbjct: 18 LGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT 56
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 24.4 bits (53), Expect = 6.3
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 219 IGPNGCTLKSIELLTNCYMLVQGQ-------TVAALGPHKGLLQVRRIVEDTMKNI 267
IG NG +K I+ + + GP I+ D ++++
Sbjct: 18 IGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSV 73
Score = 24.4 bits (53), Expect = 7.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 178 RLIGPNGCTLKSIELLTNCYM 198
+IG NG +K I+ +
Sbjct: 16 IVIGRNGEMIKKIQNDAGVRI 36
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 24.7 bits (54), Expect = 6.5
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 219 IGPNGCTLKSIELLTNCYMLV-QGQTVAALGPHKGLLQVRRIVEDTMKNIH 268
IG G +K ++ + ++V Q + G + + + + H
Sbjct: 16 IGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDRRKVSIAEEAIYLIEQEAH 66
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 24.3 bits (53), Expect = 6.5
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQ 201
+IG G ++K + + + +
Sbjct: 17 SIIGKKGESVKKMREESGARINIS 40
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 25.7 bits (56), Expect = 9.0
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 231 LLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPK--- 287
LL + + + + + V R V +H Y++K + RE + K
Sbjct: 146 LLPQFLGMYRLT----VDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKD 201
Query: 288 ---LKNENWERFLPNFKSKTLSKRKMPKKRKTKSEY 320
K+ ++ SK+ +K K E+
Sbjct: 202 LPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF 237
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 24.3 bits (53), Expect = 9.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 174 KRRQRLIGPNGCTLKSIELLTNCYM 198
+ + +IG NG L+ +EL T +
Sbjct: 19 EHHRFVIGKNGEKLQDLELKTATKI 43
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 24.1 bits (52), Expect = 9.3
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 178 RLIGPNGCTLKSIELLTNCYMLVQ 201
+IG G +K I + + +
Sbjct: 17 SIIGKGGQRIKQIRHESGASIKID 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,269,149
Number of extensions: 59360
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 37
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)