BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15012
         (1085 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OTR|A Chain A, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|B Chain B, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|C Chain C, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|D Chain D, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|E Chain E, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|F Chain F, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
          Length = 452

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 773 INIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQ 813
           ++ KCK  N+  H+TGE+ K   E W+K    +S     DQ
Sbjct: 268 LDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIISVEDPFDQ 308


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,767,493
Number of Sequences: 62578
Number of extensions: 1328160
Number of successful extensions: 2553
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 4
length of query: 1085
length of database: 14,973,337
effective HSP length: 109
effective length of query: 976
effective length of database: 8,152,335
effective search space: 7956678960
effective search space used: 7956678960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)