Query psy15012
Match_columns 1085
No_of_seqs 335 out of 1009
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:11:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rw3_A POL polyprotein; RNA an 98.9 2.4E-10 8E-15 135.1 2.1 255 342-648 164-428 (455)
2 3hst_B Protein RV2228C/MT2287; 98.1 4.7E-06 1.6E-10 81.9 7.9 117 557-686 2-128 (141)
3 3u3g_D Ribonuclease H, RNAse H 97.9 1.9E-05 6.6E-10 77.1 7.7 116 558-686 3-132 (140)
4 2ehg_A Ribonuclease HI; RNAse 97.9 1.9E-05 6.7E-10 78.6 7.7 117 559-688 2-131 (149)
5 3oym_A PFV integrase, P42IN; p 97.9 3.6E-05 1.2E-09 88.4 11.0 74 827-912 31-104 (395)
6 2kq2_A Ribonuclease H-related 97.5 0.00015 5.1E-09 72.3 7.0 116 557-686 5-132 (147)
7 1mu2_A HIV-2 RT; HIV-2 reverse 97.4 0.001 3.4E-08 80.4 14.1 183 342-574 144-341 (555)
8 2qkb_A Ribonuclease H1, HS-RNA 97.0 0.0011 3.9E-08 66.2 8.1 115 557-686 6-146 (154)
9 4htu_A Ribonuclease H, RNAse H 96.9 0.00029 1E-08 69.0 2.4 108 558-683 5-133 (134)
10 3qio_A GAG-POL polyprotein; RN 96.9 0.00041 1.4E-08 69.5 3.6 106 557-686 11-142 (150)
11 3p1g_A Xenotropic murine leuke 96.9 0.0031 1.1E-07 64.1 9.9 101 556-679 21-134 (165)
12 2e4l_A Ribonuclease HI, RNAse 96.7 0.0019 6.5E-08 65.0 6.3 113 558-687 6-141 (158)
13 3h08_A RNH (ribonuclease H); R 96.6 0.0016 5.4E-08 64.5 5.1 74 557-647 3-80 (146)
14 1jl1_A Ribonuclease HI; RNAse 96.4 0.0033 1.1E-07 63.0 6.1 113 558-687 4-139 (155)
15 2lsn_A Reverse transcriptase; 96.4 0.014 4.8E-07 59.2 10.6 112 555-678 4-139 (165)
16 2zd1_A Reverse transcriptase/r 96.1 0.0062 2.1E-07 73.5 7.4 105 557-686 438-555 (557)
17 1zbf_A Ribonuclease H-related 96.0 0.0031 1E-07 62.6 3.0 73 558-648 11-89 (142)
18 1ril_A Ribonuclease H; hydrola 95.9 0.0013 4.3E-08 67.0 -0.1 113 558-687 8-144 (166)
19 2zd1_B P51 RT; P51/P66, hetero 95.8 0.023 7.7E-07 66.4 10.1 251 341-647 143-405 (428)
20 2zd1_A Reverse transcriptase/r 95.4 0.11 3.7E-06 62.6 13.9 248 341-645 145-405 (557)
21 3nnq_A Integrase P46, N-termin 93.7 0.006 2.1E-07 57.4 -1.9 76 826-917 26-105 (114)
22 3f9k_A Integrase; protein-prot 71.7 0.21 7.3E-06 51.7 -4.4 36 876-913 12-47 (210)
23 3hph_A Integrase, IN; protein- 61.5 0.6 2E-05 48.5 -3.5 36 877-914 12-47 (219)
24 1w4s_A Polybromo, polybromo 1 42.5 29 0.00099 34.9 5.5 38 1022-1060 23-60 (174)
25 3fsi_A RT, reverse transcripta 40.4 7 0.00024 41.7 0.6 45 354-406 44-89 (255)
26 2eqk_A Tudor domain-containing 39.8 54 0.0018 29.3 6.0 57 1022-1084 18-74 (85)
27 2equ_A PHD finger protein 20-l 39.7 61 0.0021 28.1 6.3 55 1022-1084 6-60 (74)
28 2zd1_B P51 RT; P51/P66, hetero 36.3 13 0.00046 42.8 2.2 58 354-417 27-85 (428)
29 2j5u_A MREC protein; bacterial 34.8 50 0.0017 35.4 6.2 48 1023-1070 167-215 (255)
30 4a4f_A SurviVal of motor neuro 31.7 1.2E+02 0.004 25.3 6.7 57 1022-1084 5-62 (64)
31 1k6y_A Integrase; HIV-1, domai 29.7 2.6 8.8E-05 43.3 -4.9 39 868-913 8-46 (212)
32 2d9t_A Tudor domain-containing 27.6 1.7E+02 0.0059 25.3 7.3 59 1020-1084 4-63 (78)
33 1rw3_A POL polyprotein; RNA an 27.5 16 0.00056 42.3 0.9 57 354-418 48-105 (455)
34 2qf4_A Cell shape determining 27.0 51 0.0018 33.1 4.4 48 1023-1070 106-154 (172)
35 3u5e_Y L33, YL33, 60S ribosoma 26.2 39 0.0013 32.4 3.1 54 1022-1078 46-100 (127)
36 1em9_A GAG polyprotein capsid 26.0 20 0.00067 35.3 1.0 52 888-957 7-68 (154)
37 3fdr_A Tudor and KH domain-con 25.6 1E+02 0.0034 27.4 5.6 56 1023-1084 25-80 (94)
38 3iz5_Y 60S ribosomal protein L 24.2 58 0.002 32.1 3.9 54 1022-1078 45-99 (150)
39 1mu2_A HIV-2 RT; HIV-2 reverse 22.8 27 0.00092 41.6 1.6 59 354-418 27-86 (555)
40 1vq8_T 50S ribosomal protein L 22.3 72 0.0025 30.3 4.0 54 1022-1078 39-93 (120)
41 1mhn_A SurviVal motor neuron p 21.5 2E+02 0.0068 23.3 6.2 54 1025-1084 3-57 (59)
42 2diq_A Tudor and KH domain-con 21.2 1E+02 0.0036 28.2 5.0 56 1022-1084 29-85 (110)
43 3mea_A SAGA-associated factor 20.5 1.2E+02 0.004 30.9 5.4 62 1022-1084 41-103 (180)
44 3j21_U 50S ribosomal protein L 20.1 67 0.0023 30.6 3.3 54 1022-1078 42-96 (121)
No 1
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=98.91 E-value=2.4e-10 Score=135.08 Aligned_cols=255 Identities=10% Similarity=-0.008 Sum_probs=160.9
Q ss_pred hhhhHHHhhhccchhHH--HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHHhc
Q psy15012 342 GQLKSVIKRHANDGILE--ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEA 419 (1085)
Q Consensus 342 kRl~~L~~rL~~~p~l~--~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~~~ 419 (1085)
.++..+.++|.+.|... ..+.++.++... +. ......|++...|...+...- .+...++.+.|.+.
T Consensus 164 y~~~~mpfGl~naP~~fq~~m~~~l~~~~~~-~~--------~~~v~~YvDDili~s~~~~e~---~~~l~~v~~~l~~~ 231 (455)
T 1rw3_A 164 LTWTRLPQGFKNSPTLFDEALHRDLADFRIQ-HP--------DLILLQYVDDLLLAATSELDC---QQGTRALLQTLGNL 231 (455)
T ss_dssp EEESBCCSSCTTHHHHHHHHHHHHHHHHHHT-CT--------TCEEEEETTEEEEEESSHHHH---HHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhh-CC--------CceEEEEcCCEEEecCCHHHH---HHHHHHHHHHHHHc
Confidence 55666777888888776 344445444432 11 112457998876666543211 13567888889999
Q ss_pred CccccccccCCccccccccccccccccccccccceeeccccCeeEEe-ccc-ccCccchhhhhHHHHHhhhccccCCccc
Q psy15012 420 SLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLK-FEY-HYNNEKVCKRLLLSVYASFFDILGLWCP 497 (1085)
Q Consensus 420 gfnLrk~~SN~~~~~~~~i~~~d~~~~~~~K~LGl~W~~~~D~l~fk-~~~-~~~~~~~TKR~ilS~iasiyDPLGllaP 497 (1085)
||.+.. +-. .-.....+.||+.++.......-. +.. .....+.|++++.|+++. +|+...
T Consensus 232 gl~l~~------~K~--------~f~~~~~~fLG~~i~~~gi~~~~~kv~~i~~~~~p~t~k~l~~flG~----~~y~r~ 293 (455)
T 1rw3_A 232 GYRASA------KKA--------QICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT----AGFCRL 293 (455)
T ss_dssp TCCBCG------GGC--------CCSBSSCEETTEEESSSEECCCTTCCCCCCCCCTTTHHHHHHHTTTT----TCCCSS
T ss_pred CCccCc------cch--------hhhccceeEeeeeccCCeeEEChhHhhhhccCCCCCCHHHhhhhccc----chHHHH
Confidence 998731 100 011235588999988553221110 100 012346789999998865 455555
Q ss_pred hhhHHHHHHHhhhh-----ccCCCCccCChhhHHHHHHHHhhhcccceeeecceeecCCCCCCcceEeeeccccccccee
Q psy15012 498 ITTTLKLLIQKTWI-----CKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAG 572 (1085)
Q Consensus 498 v~l~~K~llq~Lw~-----~~~~WDd~lp~el~~~w~~~~~~l~~~~~~~iPR~~~~~~~~~~~~~L~~F~DAS~~ay~a 572 (1085)
++-....+++.|+. .+..|++. ..+.|..+++.+....-+..|.. ...+++|||||..|+||
T Consensus 294 fi~~~~~~~~pL~~llkk~~~~~W~~~----~~~af~~lK~~l~~~pvL~~p~~---------~~~~~l~~DAS~~~~ga 360 (455)
T 1rw3_A 294 WIPGFAEMAAPLYPLTKTGTLFNWGPD----QQKAYQEIKQALLTAPALGLPDL---------TKPFELFVDEKQGYAKG 360 (455)
T ss_dssp CCCCCGGGCCTTCC--------CCCCC----CSSSCCHHHHHTCSSCCSCCSSS---------CCTTSCEEEEEECSSSB
T ss_pred HHhhhhhhcccHHHHhcCCCCcCchHH----HHHHHHHHHHHhhcCcccccCCC---------CCcEEEEEeccCCccee
Confidence 54444444444443 24678865 45567778888877654444432 34688999999999999
Q ss_pred EEEEEeeeCCCce-eeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccceEEEechhhhhHhhhCC
Q psy15012 573 CVYLKSVSGNETN-VNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGT 648 (1085)
Q Consensus 573 ~vYlr~~~~~~~~-~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~~~~tDS~ivL~wi~~~ 648 (1085)
|++-. .+|.. ....+||....+-++++++.+||+|++.|++........ ..++++||+. +++|+++.
T Consensus 361 vL~q~---~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g-----~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 361 VLTQK---LGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG-----QPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp EECCB---CTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCS-----SCEEEECSSC-TTTTSSST
T ss_pred EEEEe---cCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCC-----CcEEEEecCh-HHHHhCCC
Confidence 87643 24433 445556665566678999999999999999887765443 5789999998 99999987
No 2
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.10 E-value=4.7e-06 Score=81.88 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=77.2
Q ss_pred ceEeeeccccccc----ceeEEEEEeeeCC-CceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccc
Q psy15012 557 YELHAFSDATKDS----YAGCVYLKSVSGN-ETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITN 631 (1085)
Q Consensus 557 ~~L~~F~DAS~~a----y~a~vYlr~~~~~-~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~ 631 (1085)
.++.+|+|||-.+ .|+.++++ +.+ |....-... . +...|--+.||.|+..|.+++... .+.+
T Consensus 2 ~~~~iy~DGs~~~~~g~~g~G~v~~--~~~~~~~~~~~~~--~---~~~~tn~~aEl~A~~~aL~~a~~~------~~~~ 68 (141)
T 3hst_B 2 VKVVIEADGGSRGNPGPAGYGAVVW--TADHSTVLAESKQ--A---IGRATNNVAEYRGLIAGLDDAVKL------GATE 68 (141)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEE--ETTSCSEEEEEEE--E---EEEECHHHHHHHHHHHHHHHHHHH------TCSE
T ss_pred cEEEEEEecCCCCCCCCcEEEEEEE--eCCCCcEEEeeec--c---CCCCchHHHHHHHHHHHHHHHHHC------CCce
Confidence 4689999998652 23333443 223 322211111 1 124688999999999999887542 3578
Q ss_pred eEEEechhhhhHhhhCC-CCCchHHHHHHHHHhhc---CCcceeeecCCCCC-CCccccc
Q psy15012 632 TYLWIDNQCVIHWIKGT-KTLPTFINNRVKEIKSS---TFPIIFRYIPTFCN-PADIACR 686 (1085)
Q Consensus 632 ~~~~tDS~ivL~wi~~~-~~~~~fv~nRv~~I~~~---~~~~~~rhV~t~~N-PAD~~SR 686 (1085)
+.++|||+.++.++.+. +.-..-....+.+|+++ ...+.|.|||...| -||.+.+
T Consensus 69 v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~ 128 (141)
T 3hst_B 69 AAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAN 128 (141)
T ss_dssp EEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHH
T ss_pred EEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHH
Confidence 99999999999999986 22223333444445444 45799999999999 6887654
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=97.89 E-value=1.9e-05 Score=77.11 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred eEeeeccccccc----ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhcccccc---
Q psy15012 558 ELHAFSDATKDS----YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKIT--- 630 (1085)
Q Consensus 558 ~L~~F~DAS~~a----y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~--- 630 (1085)
.+.+|+|||-.+ .|+.++++ +.+|....-.. ..+ ...|-.+.||.|+..|.+++.. ....
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~--~~~g~~~~~~~--~~~---~~~tn~~aEl~A~~~aL~~a~~------~~~~~~~ 69 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVIT--DEKGNTLHESS--AYI---GETTNNVAEYEALIRALEDLQM------FGDKLVD 69 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEE--CTTSCEEEEEE--EEE---EEECHHHHHHHHHHHHHHHHGG------GGGGGTT
T ss_pred eEEEEEecCCCCCCCCcEEEEEEE--eCCCCEEEEEE--eeC---CCCchHHHHHHHHHHHHHHHHH------cCCCCCC
Confidence 578999998642 33344443 33454321111 111 1358899999999999987643 2345
Q ss_pred -ceEEEechhhhhHhhhCC-CCCchHHH---HHHHHH-hhcCCcceeeecCCCCC-CCccccc
Q psy15012 631 -NTYLWIDNQCVIHWIKGT-KTLPTFIN---NRVKEI-KSSTFPIIFRYIPTFCN-PADIACR 686 (1085)
Q Consensus 631 -~~~~~tDS~ivL~wi~~~-~~~~~fv~---nRv~~I-~~~~~~~~~rhV~t~~N-PAD~~SR 686 (1085)
++.++|||+.++.++++. +.-..-.. .++.++ .+....+.|.|||...| -||-+.+
T Consensus 70 ~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~ 132 (140)
T 3u3g_D 70 MEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVN 132 (140)
T ss_dssp CEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHH
T ss_pred ceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHH
Confidence 899999999999999986 21111122 334444 44445899999999999 5887543
No 4
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.88 E-value=1.9e-05 Score=78.59 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=76.2
Q ss_pred Eeeecccccc-------c-ceeEEEEEeeeCCCceeeEeeecccccCC-CCCccchhhHHHHHHHHHhHHHHHHhccccc
Q psy15012 559 LHAFSDATKD-------S-YAGCVYLKSVSGNETNVNLVFAKSRIAPV-KRPTLPRLELLGALIAYRSLKYVHESLDLKI 629 (1085)
Q Consensus 559 L~~F~DAS~~-------a-y~a~vYlr~~~~~~~~~~ll~aKsrv~Pl-k~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i 629 (1085)
+.+|+|||-. + ||++++ + +|..... ++ ..+.|. ...|-.+.||.|+..|.+++... .+
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~----~-~g~~~~~-~~-~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~------g~ 68 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIY----L-DNRKIEG-YG-LAEKPFSINSTNNVAEYSGLICLMETMLRL------GI 68 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEE----C-SSCEEEE-EE-ECSCTTCTTCCHHHHHHHHHHHHHHHHHHH------TC
T ss_pred EEEEEeeccCCCCCChheEEEEEEE----E-CCEEEEE-ec-cccCCCCCCccHHHHHHHHHHHHHHHHHHc------CC
Confidence 4689999876 2 465554 2 4433211 11 122333 25789999999999999887643 35
Q ss_pred cceEEEechhhhhHhhhCC-CCCchHHHHHHHHHhhcCC--cceeeecCCCCC-CCccccccc
Q psy15012 630 TNTYLWIDNQCVIHWIKGT-KTLPTFINNRVKEIKSSTF--PIIFRYIPTFCN-PADIACRGS 688 (1085)
Q Consensus 630 ~~~~~~tDS~ivL~wi~~~-~~~~~fv~nRv~~I~~~~~--~~~~rhV~t~~N-PAD~~SRG~ 688 (1085)
.++.++|||+.++.|+.+. +.-..-...-+.+|+++.. .+.|.|||+..| .||-+.|-.
T Consensus 69 ~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~~~N~~AD~LA~~a 131 (149)
T 2ehg_A 69 SSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENKEADRLSRVA 131 (149)
T ss_dssp CSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCGGGCHHHHHHHHHH
T ss_pred CEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHHHHHH
Confidence 7899999999999999987 2111112222334433322 599999999999 699876643
No 5
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=97.88 E-value=3.6e-05 Score=88.38 Aligned_cols=74 Identities=20% Similarity=0.171 Sum_probs=58.1
Q ss_pred ceeeecCCcEEecCceeecccCCCCCcceEccCCCcccceehhhhhhhcccCCcchhhhhheeeeeccCCccceeeeecc
Q psy15012 827 GLELNEVNILVSKGRFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNN 906 (1085)
Q Consensus 827 ~p~lD~dGllRvgGRl~~s~l~~~~k~PIiLp~~h~lt~LII~~~H~~~~H~G~~~tl~~lR~~yWI~~~r~~Vr~vi~~ 906 (1085)
..|..+||+|++.+.- ...++|.. .+...|+..+|. .+|.|...|...|+++||++++++.++++++.
T Consensus 31 ~~y~~~~g~ly~~~~~----------g~~~~~~~-~~~~~il~~~H~-~gH~g~~~~~~~l~~~~~~~~~~~~v~~~~~~ 98 (395)
T 3oym_A 31 YTYFLEDGKVKVSRPE----------GVKIIPPQ-SDRQKIVLQAHN-LAHTGREATLLKIANLYWWPNMRKDVVKQLGR 98 (395)
T ss_dssp SCEEEETTEEEEEETT----------EEEECCCH-HHHHHHHHHHHH-TTTCCHHHHHHHHHTTBCCTTHHHHHHHHHTT
T ss_pred CcEEEECCEEEEEcCC----------CcEEECCH-HHHHHHHHHHHh-cCCCCHHHHHHHHhCCeECCCHHHHHHHhCcc
Confidence 3455558999875421 12344433 357789999999 89999999999999999999999999999999
Q ss_pred chhhhh
Q psy15012 907 CVCLRK 912 (1085)
Q Consensus 907 C~~l~K 912 (1085)
|..|.+
T Consensus 99 C~~C~~ 104 (395)
T 3oym_A 99 CQQCLI 104 (395)
T ss_dssp CHHHHH
T ss_pred Chhhcc
Confidence 996654
No 6
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=97.47 E-value=0.00015 Score=72.33 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=72.4
Q ss_pred ceEeeeccccc----ccceeEEEEEeeeCCCceeeEeeecccccCC-CCCccchhhHHHHHHHHHhHHHHHHhccccccc
Q psy15012 557 YELHAFSDATK----DSYAGCVYLKSVSGNETNVNLVFAKSRIAPV-KRPTLPRLELLGALIAYRSLKYVHESLDLKITN 631 (1085)
Q Consensus 557 ~~L~~F~DAS~----~ay~a~vYlr~~~~~~~~~~ll~aKsrv~Pl-k~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~ 631 (1085)
..+.+|+|+|- .+||++++ . +|.. .-+...+...|. ...|-.|.||.|+..|++++.. .+ . .
T Consensus 5 ~~i~iytDGs~~~g~~G~G~vi~--~---~g~~-~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~----~~--~-~ 71 (147)
T 2kq2_A 5 TEYDVYTDGSYVNGQYAWAYAFV--K---DGKV-HYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQ----LG--V-K 71 (147)
T ss_dssp SCCEEECCCCCBTTBCEEEEEEE--E---TTEE-EEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHH----HT--C-C
T ss_pred CeEEEEECCCCCCCCcEEEEEEE--E---CCEE-EEEEeccccccccccccHHHHHHHHHHHHHHHHHH----CC--C-e
Confidence 46789999987 44555443 1 3432 111110111121 2468999999999999987533 23 3 8
Q ss_pred eEEEechhhhhHhhhCC-C-CCchHHHHHHHHHhhcCCcceeeecCCCC----C-CCccccc
Q psy15012 632 TYLWIDNQCVIHWIKGT-K-TLPTFINNRVKEIKSSTFPIIFRYIPTFC----N-PADIACR 686 (1085)
Q Consensus 632 ~~~~tDS~ivL~wi~~~-~-~~~~fv~nRv~~I~~~~~~~~~rhV~t~~----N-PAD~~SR 686 (1085)
+.++|||+.+..|+.+. + +-+..+.|+ ..++++...+.|.|||+-. | -||-+.|
T Consensus 72 v~I~tDS~~i~~w~~~~w~~~~~~~~~~~-~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~ 132 (147)
T 2kq2_A 72 IRILHDYAGIAFWATGEWKAKNEFTQAYA-KLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAK 132 (147)
T ss_dssp CCBSSCCSTHHHHTTSSSSCCHHHHHHHH-CGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEEECcHHHHHHHhCCCccCCcchHHHH-HHHHHhcCCeeEEEecCcCCCcchHHHHHHHH
Confidence 99999999999999986 2 222333332 3355555589999999753 3 5776544
No 7
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=97.38 E-value=0.001 Score=80.38 Aligned_cols=183 Identities=10% Similarity=0.050 Sum_probs=101.3
Q ss_pred hhhhHHHhhhccchhHH--HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHHhc
Q psy15012 342 GQLKSVIKRHANDGILE--ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEA 419 (1085)
Q Consensus 342 kRl~~L~~rL~~~p~l~--~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~~~ 419 (1085)
.++..+.++|.+.|... ..+.++.+++.... ......|++.--|+..+..... .....++.+.|.+.
T Consensus 144 y~~~~mPfGl~napa~fq~~m~~il~~~~~~~~---------~~~v~~Y~DDIli~s~~~~~eh--~~~l~~v~~~l~~~ 212 (555)
T 1mu2_A 144 YIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANK---------DVIIIQYMDDILIASDRTDLEH--DRVVLQLKELLNGL 212 (555)
T ss_dssp EEESBCCTTCTTHHHHHHHHHHHHHHHHHHHCT---------TSEEEEETTEEEEEECSCHHHH--HHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHHhhCC---------CcEEEEEecceEEecCCCHHHH--HHHHHHHHHHHHHc
Confidence 45556677888888876 45566666665431 0113578887777655221111 12355777788888
Q ss_pred CccccccccCCccccccccccccccccccccccceeeccccCeeEEeccccc-CccchhhhhHHHHHhhh-----ccccC
Q psy15012 420 SLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHY-NNEKVCKRLLLSVYASF-----FDILG 493 (1085)
Q Consensus 420 gfnLrk~~SN~~~~~~~~i~~~d~~~~~~~K~LGl~W~~~~D~l~fk~~~~~-~~~~~TKR~ilS~iasi-----yDPLG 493 (1085)
||.+.. .... .....+.||+..+.. .+..... .. ...+.|++++-|+++.+ |=| +
T Consensus 213 gl~l~~-----~K~~----------~~~~~~fLG~~i~~~--gi~~~~~-ki~~i~~~t~k~lr~flG~~~~~rrfi~-~ 273 (555)
T 1mu2_A 213 GFSTPD-----EKFQ----------KDPPYHWMGYELWPT--KWKLQKI-QLPQKEIWTVNDIQKLVGVLNWAAQLYP-G 273 (555)
T ss_dssp TCBCCS-----TTEE----------CSSSEEETTEEECSS--EEEECCC-CCCCCSSCBHHHHHHHHHHHHHHHHHST-T
T ss_pred CCccCH-----HHhc----------cCCceeEEeEEEeCC--ceecccc-ccCcCCCCCHHHHHhHhhhhhhhhhccC-c
Confidence 887621 1101 123467899987653 3333211 11 12355888888877643 111 1
Q ss_pred C-ccchhhHHHHHHHhhhh-----ccCCCCccCChhhHHHHHHHHhhhcccceeeecceeecCCCCCCcceEeeeccccc
Q psy15012 494 L-WCPITTTLKLLIQKTWI-----CKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATK 567 (1085)
Q Consensus 494 l-laPv~l~~K~llq~Lw~-----~~~~WDd~lp~el~~~w~~~~~~l~~~~~~~iPR~~~~~~~~~~~~~L~~F~DAS~ 567 (1085)
+ ..| |...|-. .+..|+ ++..+.++++++.|....-+..|. . ...+.++||||.
T Consensus 274 ~~~~p-------L~~llk~~~~~~~~~~wt----~~~~~af~~lK~~L~~~p~L~~p~------~---~~~~~l~~das~ 333 (555)
T 1mu2_A 274 IKTKH-------LCRLISGKMTLTEEVQWT----ELAEAELEENRIILSQEQEGHYYQ------E---EKELEATVQKDQ 333 (555)
T ss_dssp CCCHH-------HHTTSCSSSCTTCBCCCC----HHHHHHHHHHHHHHSCCEEEECBC------T---TSCCEEEEEECS
T ss_pred cchHH-------HHHHhccCCCCCCcccCC----HHHHHHHHHHHHHHhhCccccccC------C---CCCEEEEEecCC
Confidence 1 122 2222221 356675 567888999999888754333322 1 346778888887
Q ss_pred c-cceeEE
Q psy15012 568 D-SYAGCV 574 (1085)
Q Consensus 568 ~-ay~a~v 574 (1085)
. |+||++
T Consensus 334 ~ga~g~vl 341 (555)
T 1mu2_A 334 DNQWTYKI 341 (555)
T ss_dssp SSCEEEEE
T ss_pred CCcEEEEE
Confidence 7 477664
No 8
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=97.05 E-value=0.0011 Score=66.25 Aligned_cols=115 Identities=23% Similarity=0.218 Sum_probs=70.5
Q ss_pred ceEeeeccccccc-------ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccc
Q psy15012 557 YELHAFSDATKDS-------YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKI 629 (1085)
Q Consensus 557 ~~L~~F~DAS~~a-------y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i 629 (1085)
..+.+|+|+|-.. .|+.+|++ +.++... ++ ++.. ..|--+.||.|+..|++++.. ...
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~--~~~~~~~----~~-~l~~--~~tn~~aEl~A~~~aL~~~~~------~~~ 70 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWG--PGHPLNV----GI-RLPG--RQTNQRAEIHAACKAIEQAKT------QNI 70 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECS--TTCTTCE----EE-ECCS--SCCHHHHHHHHHHHHHHHHHH------TTC
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEE--CCCceeE----Ee-ecCC--CCchHHHHHHHHHHHHHHHHh------CCC
Confidence 4688999998642 34445543 2222111 11 1111 479999999999999998753 246
Q ss_pred cceEEEechhhhhHhhhCC------CCCc----hHHHHH--HHHHhhcCC--cceeeecCCCC----C-CCccccc
Q psy15012 630 TNTYLWIDNQCVIHWIKGT------KTLP----TFINNR--VKEIKSSTF--PIIFRYIPTFC----N-PADIACR 686 (1085)
Q Consensus 630 ~~~~~~tDS~ivL~wi~~~------~~~~----~fv~nR--v~~I~~~~~--~~~~rhV~t~~----N-PAD~~SR 686 (1085)
.++.++|||+.|+.-|.+- +.|+ ..+.|+ +.+|.++.. .+.|.|||+.. | -||.+.+
T Consensus 71 ~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~~~V~~H~g~~~N~~AD~LA~ 146 (154)
T 2qkb_A 71 NKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAR 146 (154)
T ss_dssp CEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCHHHHHHHHHHH
T ss_pred ceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEEEEccCCCCCHhHHHHHHHHH
Confidence 7899999999888655441 2222 223333 445544432 59999999854 4 4665443
No 9
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=96.93 E-value=0.00029 Score=69.01 Aligned_cols=108 Identities=19% Similarity=0.082 Sum_probs=65.9
Q ss_pred eEeeeccccc------ccceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccc
Q psy15012 558 ELHAFSDATK------DSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITN 631 (1085)
Q Consensus 558 ~L~~F~DAS~------~ay~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~ 631 (1085)
...+|+|||- .+||++++ . +|..... . . ++...|-.|+||+|+..|.+++.. .+. +
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~----~-~g~~~~~-~--g---~~~~tTNN~aEl~A~i~aL~~l~~----~~~---~ 66 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDT----K-TGEVLFE-R--E---PIPIGTNNMGEFLAIVHGLRYLKE----RNS---R 66 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEET----T-TCCEEEE-E--E---EEEEECHHHHHHHHHHHHHHHHHH----TTC---C
T ss_pred ceEEEEeeccCCCCCCeEEEEEEE----E-CCEEEEE-e--c---CCCCCchHHHHHHHHHHHHHHHHh----CCC---C
Confidence 3568999985 45665542 1 3433222 1 1 223579999999999999988754 332 2
Q ss_pred eEEEechhhhhHhhhCC---CCCchHHHHH-----HH----HHhhcC---CcceeeecCCCCCCCcc
Q psy15012 632 TYLWIDNQCVIHWIKGT---KTLPTFINNR-----VK----EIKSST---FPIIFRYIPTFCNPADI 683 (1085)
Q Consensus 632 ~~~~tDS~ivL~wi~~~---~~~~~fv~nR-----v~----~I~~~~---~~~~~rhV~t~~NPAD~ 683 (1085)
+.++|||+.|+.||++. ...+.-|.|+ +. -+++.. +.+.|.--.=.+.|||.
T Consensus 67 v~i~tDSqyVi~wi~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~~~~~~~kw~~~~wge~~ad~ 133 (134)
T 4htu_A 67 KPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY 133 (134)
T ss_dssp CCEEESCHHHHHHHHHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTCC
T ss_pred EEEEcchHHHHHHHHcCCcccCCCCCccCHHHHHHHHHHHHHHHhCCCCCceEEEEecccccccCCC
Confidence 79999999999999975 2223334544 22 122222 23555444445778886
No 10
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=96.93 E-value=0.00041 Score=69.46 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=64.5
Q ss_pred ceEeeeccccc------ccceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhcccccc
Q psy15012 557 YELHAFSDATK------DSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKIT 630 (1085)
Q Consensus 557 ~~L~~F~DAS~------~ay~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~ 630 (1085)
..+.+|+|||- .+||++++ ++.... + ++...|-.|.||.|+..|.+.. ..
T Consensus 11 ~~~~iytDGs~~~n~g~~g~G~v~~------~~~~~~-~-------~~~~~Tnn~aEl~A~i~AL~~~----------~~ 66 (150)
T 3qio_A 11 GAETFYVDGAANRETKLGKAGYVTN------RGRQKV-V-------TLTDTTNQKTELQAIYLALQDS----------GL 66 (150)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEET------TSCEEE-E-------EESSCCHHHHHHHHHHHHHHHS----------CS
T ss_pred CCEEEEEccCCCCCCCCeEEEEEEE------cCCEEE-E-------eCCCCCHHHHHHHHHHHHHHhC----------CC
Confidence 46899999995 23443321 222211 1 1346899999999999998862 27
Q ss_pred ceEEEechhhhhHhhhCC------CCCc----hHHHHH--HHHHhh---cCCcceeeecCCCC----C-CCccccc
Q psy15012 631 NTYLWIDNQCVIHWIKGT------KTLP----TFINNR--VKEIKS---STFPIIFRYIPTFC----N-PADIACR 686 (1085)
Q Consensus 631 ~~~~~tDS~ivL~wi~~~------~~~~----~fv~nR--v~~I~~---~~~~~~~rhV~t~~----N-PAD~~SR 686 (1085)
.+.++|||+-|+.-|..- +.|+ .-|.|+ +.+|.+ ....+.|.||++.. | -||-+.|
T Consensus 67 ~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~ 142 (150)
T 3qio_A 67 EVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS 142 (150)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHH
T ss_pred cEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHH
Confidence 899999999988744431 2232 245554 333332 23479999999986 4 6886444
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=96.91 E-value=0.0031 Score=64.09 Aligned_cols=101 Identities=11% Similarity=0.122 Sum_probs=64.7
Q ss_pred cceEeeecccccc------cceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccc
Q psy15012 556 NYELHAFSDATKD------SYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKI 629 (1085)
Q Consensus 556 ~~~L~~F~DAS~~------ay~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i 629 (1085)
...+.+|+|+|-. +||+++| . +|.... . +.. ....|..|.||.|+..|.+++ ..
T Consensus 21 ~~~i~iytDGs~~~npG~~g~G~vi~----~-~~~~~~--~--~~~--~~~~Tnn~aEl~Ai~~AL~~~---------~~ 80 (165)
T 3p1g_A 21 DADYTWYTDGSSFLQEGQRRAGAAVT----T-ETEVIW--A--RAL--PAGTSAQRAELIALTQALKMA---------EG 80 (165)
T ss_dssp TCSEEEEEEEEEEEETTEEEEEEEEE----C-SSCEEE--E--EEE--CTTCCHHHHHHHHHHHHHHHT---------BT
T ss_pred CCCEEEEEEcccCCCCCceEEEEEEE----E-CCEEEE--E--ecC--CCCCcHHHHHHHHHHHHHHHc---------cC
Confidence 4469999999975 3555444 1 332211 1 111 124699999999999999876 25
Q ss_pred cceEEEechhhhhH--hhhCCCCCchHHHHH--HHHH-hh--cCCcceeeecCCCCC
Q psy15012 630 TNTYLWIDNQCVIH--WIKGTKTLPTFINNR--VKEI-KS--STFPIIFRYIPTFCN 679 (1085)
Q Consensus 630 ~~~~~~tDS~ivL~--wi~~~~~~~~fv~nR--v~~I-~~--~~~~~~~rhV~t~~N 679 (1085)
..+.++|||+.|+. |+.+.+ ..|.|+ +.++ .+ ....+.|+||++-.+
T Consensus 81 ~~v~I~tDS~~vi~~iw~~~~g---~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g 134 (165)
T 3p1g_A 81 KKLNVYTDSRYAFATAHVHSEG---REIKNKNEILALLKALFLPKRLSIIHCPGHQK 134 (165)
T ss_dssp SEEEEEECCHHHHHHHHSCCCS---CCCSSHHHHHHHHHHTTSBSEEEEEECCSSCC
T ss_pred ceEEEEEchHHHHhhhhcccCC---CcccCHHHHHHHHHHHhcCCceEEEEecCCCC
Confidence 78999999987775 654431 223343 2333 22 234799999999873
No 12
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=96.68 E-value=0.0019 Score=65.02 Aligned_cols=113 Identities=21% Similarity=0.188 Sum_probs=67.5
Q ss_pred eEeeeccccccc----ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccceE
Q psy15012 558 ELHAFSDATKDS----YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTY 633 (1085)
Q Consensus 558 ~L~~F~DAS~~a----y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~~ 633 (1085)
.+.+|+|+|-.+ .|+.++++. ++... .+.+ .+ ...|-.+.||.|+..|++++. + ...+.
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~---~~~~~-~~~~--~~---~~~tn~~aEl~A~~~AL~~~~----~----~~~v~ 68 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNY---KGHTK-EMSD--GF---SLTTNNRMELLAPIVALEALK----E----PCKII 68 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEE---TTEEE-EEEE--EE---EEECHHHHHHHHHHHHHHTCS----S----CCEEE
T ss_pred eEEEEEcccccCCCCcEEEEEEEEE---CCEEE-EEec--Cc---CCCccHHHHHHHHHHHHHHhc----c----CCeEE
Confidence 688999998752 233344432 22211 1111 11 236888999999999998753 1 27899
Q ss_pred EEechhhhhHhhhC----C--CCC----chHHHHH--HHHHhhcCC--cceeeecCCC----CC-CCcccccc
Q psy15012 634 LWIDNQCVIHWIKG----T--KTL----PTFINNR--VKEIKSSTF--PIIFRYIPTF----CN-PADIACRG 687 (1085)
Q Consensus 634 ~~tDS~ivL~wi~~----~--~~~----~~fv~nR--v~~I~~~~~--~~~~rhV~t~----~N-PAD~~SRG 687 (1085)
++|||+.|+.-|.. = +.| ...|.|+ +.+|.++.. .+.|.|||+- .| -||-+.|-
T Consensus 69 I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~ 141 (158)
T 2e4l_A 69 LTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARA 141 (158)
T ss_dssp EEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCCCCchhHHHHHHHHHH
Confidence 99999999874443 1 222 2234443 234444332 6899999965 34 57765543
No 13
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=96.62 E-value=0.0016 Score=64.54 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=48.6
Q ss_pred ceEeeeccccccc----ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccce
Q psy15012 557 YELHAFSDATKDS----YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNT 632 (1085)
Q Consensus 557 ~~L~~F~DAS~~a----y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~ 632 (1085)
..+.+|+|+|-.. .|+.++++. . + ...-+.. +....|-.|.||.|+..|++.+.. ...+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~--~-~-~~~~~~~-----~~~~~Tnn~aEl~A~~~AL~~~~~--------~~~v 65 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMY--G-S-SRKEISG-----YDPATTNNRMELMAAIKGLEALKE--------PARV 65 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEE--T-T-EEEEEEE-----EEEEECHHHHHHHHHHHHHHTCSS--------CCEE
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEE--C-C-eeEEeec-----CCCCCcHHHHHHHHHHHHHHhcCc--------cCcE
Confidence 3689999999432 344444442 2 2 2111111 112468889999999999988642 4789
Q ss_pred EEEechhhhhHhhhC
Q psy15012 633 YLWIDNQCVIHWIKG 647 (1085)
Q Consensus 633 ~~~tDS~ivL~wi~~ 647 (1085)
.++|||+.|+.-|..
T Consensus 66 ~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 66 QLYSDSAYLVNAMNE 80 (146)
T ss_dssp EEEESCHHHHHHHHS
T ss_pred EEEeChHHHHHHHHH
Confidence 999999988875544
No 14
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=96.42 E-value=0.0033 Score=63.01 Aligned_cols=113 Identities=20% Similarity=0.188 Sum_probs=69.5
Q ss_pred eEeeeccccccc----ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccceE
Q psy15012 558 ELHAFSDATKDS----YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTY 633 (1085)
Q Consensus 558 ~L~~F~DAS~~a----y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~~ 633 (1085)
.+.+|+|+|-.. .|+.++++. .++ .. .+.+ .+ ...|--+.||.|+..|++++.. ..++.
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~--~~~-~~-~~~~--~~---~~~tn~~aEl~A~~~aL~~~~~--------~~~v~ 66 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRY--RGR-EK-TFSA--GY---TRTTNNRMELMAAIVALEALKE--------HAEVI 66 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEE--TTE-EE-EEEE--EE---EEECHHHHHHHHHHHHHHTCCS--------CCEEE
T ss_pred eEEEEEccccCCCCCceEEEEEEEE--CCe-EE-EEec--CC---CCCcHHHHHHHHHHHHHHHhCc--------CCcEE
Confidence 578999998742 333444442 121 11 1111 11 2358889999999999987642 27899
Q ss_pred EEechhhhhHhhhCC------CCC----chHHHHH--HHHHhhcCC--cceeeecCCC----CC-CCcccccc
Q psy15012 634 LWIDNQCVIHWIKGT------KTL----PTFINNR--VKEIKSSTF--PIIFRYIPTF----CN-PADIACRG 687 (1085)
Q Consensus 634 ~~tDS~ivL~wi~~~------~~~----~~fv~nR--v~~I~~~~~--~~~~rhV~t~----~N-PAD~~SRG 687 (1085)
++|||+.|+.-|..- +.| +..|.|+ +.+|.++.. .+.|+|||+- .| -||-+.+-
T Consensus 67 I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~ 139 (155)
T 1jl1_A 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARA 139 (155)
T ss_dssp EEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCCCCCHHHHHHHHHHHH
Confidence 999999999766651 222 2244443 345555443 6899999964 34 57765543
No 15
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=96.40 E-value=0.014 Score=59.25 Aligned_cols=112 Identities=12% Similarity=0.020 Sum_probs=62.8
Q ss_pred CcceEeeeccccccc---------ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhc
Q psy15012 555 TNYELHAFSDATKDS---------YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESL 625 (1085)
Q Consensus 555 ~~~~L~~F~DAS~~a---------y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l 625 (1085)
...++++|+|+|-.+ .|..+|++....+.. +..+-. .-|=.|.|+.|.+.|+..+... .+
T Consensus 4 ~~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~---~~~~~~------~~tnn~te~~Aei~Al~~al~~--al 72 (165)
T 2lsn_A 4 GQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQ---VLNQWS------IPLGNHTAQMAEIAAVEFACKK--AL 72 (165)
T ss_dssp CCCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCC---EEEEEE------EEESSCCHHHHHHHHHHHHHHH--HH
T ss_pred CCceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccE---Eecccc------CCchHHHHHHHHHHHHHHHHHH--Hh
Confidence 357899999999421 334445543222211 111100 1233578898888887665432 22
Q ss_pred cccccceEEEechhhhhH--------hhhCC--CCCchHHHHH--HHHHhh---cCCcceeeecCCCC
Q psy15012 626 DLKITNTYLWIDNQCVIH--------WIKGT--KTLPTFINNR--VKEIKS---STFPIIFRYIPTFC 678 (1085)
Q Consensus 626 ~~~i~~~~~~tDS~ivL~--------wi~~~--~~~~~fv~nR--v~~I~~---~~~~~~~rhV~t~~ 678 (1085)
.. ...+.++|||+-|+. |.++. ..-+.-|.|+ ..+|.+ ....+.|.||++-.
T Consensus 73 ~~-~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~ 139 (165)
T 2lsn_A 73 KI-PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQ 139 (165)
T ss_dssp HS-SSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSS
T ss_pred cC-CCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 22 246999999998874 44443 2223346654 233333 23478999999864
No 16
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=96.13 E-value=0.0062 Score=73.52 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=69.3
Q ss_pred ceEeeecccccc------cceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhcccccc
Q psy15012 557 YELHAFSDATKD------SYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKIT 630 (1085)
Q Consensus 557 ~~L~~F~DAS~~------ay~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~ 630 (1085)
..+.+|+|||-. |||++++ +|....+ +....|-.+.||.|+..|.+++ ..
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~------~~~~~~~--------~~~~~TNn~aEl~Ai~~aL~~~----------~~ 493 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTN------KGRQKVV--------PLTNTTNQKTELQAIYLALQDS----------GL 493 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEET------TSCEEEE--------EECSCCHHHHHHHHHHHHHHHS----------CS
T ss_pred CCEEEEEccCCCCCCCceEEEEEEE------CCcEEEe--------cCCCCCHHHHHHHHHHHHHHhC----------CC
Confidence 358999999852 3333322 2322111 2245799999999999999876 47
Q ss_pred ceEEEechhhhhHhhhCC-CC-CchHHHHHHHHHhhcCCcceeeecCCC----CC-CCccccc
Q psy15012 631 NTYLWIDNQCVIHWIKGT-KT-LPTFINNRVKEIKSSTFPIIFRYIPTF----CN-PADIACR 686 (1085)
Q Consensus 631 ~~~~~tDS~ivL~wi~~~-~~-~~~fv~nRv~~I~~~~~~~~~rhV~t~----~N-PAD~~SR 686 (1085)
++.++|||+.|+..|.+. .. .......-+.++.+. ..+.|.||++. .| -||-+.+
T Consensus 494 ~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~~-~~v~~~wV~~H~g~~~Ne~AD~LA~ 555 (557)
T 2zd1_A 494 EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKK-EKVYLAWVPAHKGIGGNEQVDKLVS 555 (557)
T ss_dssp EEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHHC-SEEEEEECCSSSCCTTCCGGGGCC-
T ss_pred cEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhcC-CCEEEEEcCCCCCChhHHHHHHHHh
Confidence 899999999999999987 22 233333223344443 47999999994 35 5776543
No 17
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=95.98 E-value=0.0031 Score=62.57 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=51.4
Q ss_pred eEeeecccccc------cceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccc
Q psy15012 558 ELHAFSDATKD------SYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITN 631 (1085)
Q Consensus 558 ~L~~F~DAS~~------ay~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~ 631 (1085)
.+.+|+|||-. +||++ ++ .+|.... . + . ++...|-.|.||+|+..|.+++.. ++. +
T Consensus 11 ~~~iy~DGa~~gNpG~~G~G~v--l~---~~g~~~~-~-~-~---~~~~~TNN~aEl~A~i~aL~~~~~----~~~---~ 72 (142)
T 1zbf_A 11 WESLSVDVGSQGNPGIVEYKGV--DT---KTGEVLF-E-R-E---PIPIGTNNMGEFLAIVHGLRYLKE----RNS---R 72 (142)
T ss_dssp SSSEEEEEEECSSSEEEEEEEE--ET---TTCCEEE-E-C-C---CEEEECHHHHHHHHHHHHHHHHHH----TTC---C
T ss_pred eEEEEEeeccCCCCCCeEEEEE--EE---eCCEEEE-E-e-c---ccCCcCcHHHHHHHHHHHHHHHHh----CCC---e
Confidence 56799999763 45444 33 2443311 1 1 2 223468999999999999998763 333 8
Q ss_pred eEEEechhhhhHhhhCC
Q psy15012 632 TYLWIDNQCVIHWIKGT 648 (1085)
Q Consensus 632 ~~~~tDS~ivL~wi~~~ 648 (1085)
+.++|||+.|+.|+++.
T Consensus 73 v~i~tDS~~vi~w~~~~ 89 (142)
T 1zbf_A 73 KPIYSNSQTAIKWVKDK 89 (142)
T ss_dssp CCEEESCHHHHHHHHHT
T ss_pred EEEEEehHHHHHHHHcC
Confidence 99999999999999988
No 18
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=95.91 E-value=0.0013 Score=66.99 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=68.3
Q ss_pred eEeeeccccccc----ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccceE
Q psy15012 558 ELHAFSDATKDS----YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTY 633 (1085)
Q Consensus 558 ~L~~F~DAS~~a----y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~~ 633 (1085)
.+.+|+|+|-.. .|+.++++. .++ ... +.+ . ....|-.+.||.|+..|++++.. ..++.
T Consensus 8 ~i~iytDGs~~~n~g~~G~G~v~~~--~~~-~~~-~~~--~---~~~~Tnn~aEl~Ai~~AL~~~~~--------~~~v~ 70 (166)
T 1ril_A 8 RVALFTDGACLGNPGPGGWAALLRF--HAH-EKL-LSG--G---EACTTNNRMELKAAIEGLKALKE--------PCEVD 70 (166)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEECB--TTB-CCE-ECC--E---EEEECHHHHHHHHHHHHHHSCCS--------CCEEE
T ss_pred cEEEEECccccCCCCCEEEEEEEEE--CCE-EEE-Eec--C---CCCCcHHHHHHHHHHHHHHHhcc--------CCeEE
Confidence 578999998742 333444432 222 111 111 1 12468889999999999986532 24899
Q ss_pred EEechhhhhHhhhCC-------CCCc----hHHHHH--HHHHhhcCC--cceeeecCC----CCC-CCcccccc
Q psy15012 634 LWIDNQCVIHWIKGT-------KTLP----TFINNR--VKEIKSSTF--PIIFRYIPT----FCN-PADIACRG 687 (1085)
Q Consensus 634 ~~tDS~ivL~wi~~~-------~~~~----~fv~nR--v~~I~~~~~--~~~~rhV~t----~~N-PAD~~SRG 687 (1085)
++|||+.|+.-|.+. +.|+ ..|.|+ +.+|.++.. .+.|+|||+ ..| -||-+.+-
T Consensus 71 I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~ 144 (166)
T 1ril_A 71 LYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARR 144 (166)
T ss_dssp EECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHH
T ss_pred EEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEEEeeCCCCchhHHHHHHHHHH
Confidence 999999998755541 2232 334442 344444333 689999984 355 58876654
No 19
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=95.84 E-value=0.023 Score=66.38 Aligned_cols=251 Identities=8% Similarity=-0.013 Sum_probs=140.4
Q ss_pred hhhhhHHHhhhccchhHH--HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHHh
Q psy15012 341 LGQLKSVIKRHANDGILE--ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNE 418 (1085)
Q Consensus 341 ~kRl~~L~~rL~~~p~l~--~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~~ 418 (1085)
..++..+.++|.+.|... ..+.++.++++.. .+ .....|++.-.|+..+..... .....++.+.|.+
T Consensus 143 ~y~~~vmPfGl~nsPa~fq~~m~~il~~~~~~~-~~--------~~v~vY~DDIlI~s~~~~~eh--~~~l~~v~~~l~~ 211 (428)
T 2zd1_B 143 RYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQN-PD--------IVIYQYMDDLYVGSDLEIGQH--RTKIEELRQHLLR 211 (428)
T ss_dssp EEEESBCCTTCTHHHHHHHHHHHHHHHHHHHHC-TT--------CEEEEETTEEEEEECSCHHHH--HHHHHHHHHHHHH
T ss_pred eEEEEeeCCCCcchHHHHHHHHHHHHHHHhhcC-CC--------ceEEEEecceEEecCCcHHHH--HHHHHHHHHHHHH
Confidence 456667788999999876 4556666666652 11 123568887777665321111 1245677778888
Q ss_pred cCccccccccCCccccccccccccccccccccccceeeccccCeeEEeccccc-CccchhhhhHHHHHhhh--ccccCCc
Q psy15012 419 ASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHY-NNEKVCKRLLLSVYASF--FDILGLW 495 (1085)
Q Consensus 419 ~gfnLrk~~SN~~~~~~~~i~~~d~~~~~~~K~LGl~W~~~~D~l~fk~~~~~-~~~~~TKR~ilS~iasi--yDPLGll 495 (1085)
.||.+.. .. . . .....+.||+..+...- .... ... .....|++++-|+++.+ |-. ++
T Consensus 212 ~gL~l~~-----~K-c-~--------~~~~~~fLG~~i~~~~i--~~~~-~ki~~~~~~t~k~lr~flG~~~yyrr--Fi 271 (428)
T 2zd1_B 212 WGLTTPD-----KK-H-Q--------KEPPFLWMGYELHPDKW--TVQP-IVLPEKDSWTVNDIQKLVGKLNWASQ--IY 271 (428)
T ss_dssp HHC---------------------------CTTCCEEECGGGC--CCCC-CCCCCCSSEEHHHHHHHHHHHHHHTT--TC
T ss_pred hCCccCh-----hH-c-c--------ccceEEEeccEecCCce--Eecc-cccccccccCHHHHHHHhhhHHHHHH--hc
Confidence 8887621 11 1 0 01235779998765432 2111 011 22244888888877632 110 11
Q ss_pred cchhhHHHHHHHhhhhc-----cCCCCccCChhhHHHHHHHHhhhcccceeeecceeecCCCCCCcceEeeecccccc-c
Q psy15012 496 CPITTTLKLLIQKTWIC-----KLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKD-S 569 (1085)
Q Consensus 496 aPv~l~~K~llq~Lw~~-----~~~WDd~lp~el~~~w~~~~~~l~~~~~~~iPR~~~~~~~~~~~~~L~~F~DAS~~-a 569 (1085)
.-+. ++-|.+.+-.. +..|+ ++....++++++.|....-+..| . ..-.+.+.||||.. +
T Consensus 272 ~~~s--~~pL~~llkk~~~~~~~~~Wt----~~~~~af~~lK~~L~~~p~l~~p---d------~~~~~~l~~das~~g~ 336 (428)
T 2zd1_B 272 PGIK--VRQLSKLLRGTKALTEVIPLT----EEAELELAENREILKEPVHGVYY---D------PSKDLIAEIQKQGQGQ 336 (428)
T ss_dssp TTCC--CHHHHHTTCSCCCTTCEECCC----HHHHHHHHHHHHHTTSCCTTCCC---C------TTSCCEEEEEEEETTE
T ss_pred CCcc--HHHHHHHHccCCCCCCeecCC----HHHHHHHHHHHHHHhcchhcccc---C------CCCCEEEEEecCCCCc
Confidence 1111 22222222222 35675 56788888888888774422222 1 13478899999995 6
Q ss_pred ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHH-HHHHHHhHHHHHHhccccccceEEEechhhhhHhhhC
Q psy15012 570 YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLG-ALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKG 647 (1085)
Q Consensus 570 y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a-~~l~~~l~~~v~~~l~~~i~~~~~~tDS~ivL~wi~~ 647 (1085)
+|++++- .+| .. ..++ ++.+-++++..-+|++| ++.+.+--.... +|-..+.++.+||.+..-+|...
T Consensus 337 ~g~vl~q----~~~--~~-~~s~-~~~~~~~y~~~~~e~la~vv~al~~~r~yl--~G~~~~~~i~~td~~~~~~~~~~ 405 (428)
T 2zd1_B 337 WTYQIYQ----EPF--KN-LKTG-KYARMRGAHTNDVKQLTEAVQKITTESIVI--WGKTPKFKLPIQKETWETWWTEY 405 (428)
T ss_dssp EEEEEES----STT--CE-EEEE-EEECCSSCTTCHHHHHHHHHHHHHHHHHHH--HSSCCEEEESSCHHHHHHHHHHH
T ss_pred EEEEEec----CCC--ce-eeec-ccchhhhcccchHHHHHHHHHHhhccceEE--ECCCCcEECCccHHHHHHHHHhc
Confidence 6877662 233 22 2222 34466788899999998 777766554433 34445667889999987777654
No 20
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=95.35 E-value=0.11 Score=62.63 Aligned_cols=248 Identities=9% Similarity=0.008 Sum_probs=135.5
Q ss_pred hhhhhHHHhhhccchhHH--HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHHh
Q psy15012 341 LGQLKSVIKRHANDGILE--ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNE 418 (1085)
Q Consensus 341 ~kRl~~L~~rL~~~p~l~--~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~~ 418 (1085)
..++..+.++|.+.|... ..+.++.+++.... + .....|++.-.|+..+..... .....++.+.|.+
T Consensus 145 ~y~~~~mPfGl~nap~~fq~~m~~il~~~~~~~~-~--------~~v~~Y~DDIli~s~~~~~eh--~~~l~~v~~~l~~ 213 (557)
T 2zd1_A 145 RYQYNVLPQGWKGSPAIFQSSMTKILEPFAAQNP-D--------IVIYQYMDDLYVGSDLEIGQH--RTKIEELRQHLLR 213 (557)
T ss_dssp EEEESBCCTTCTTHHHHHHHHHHHHHHHHHHTCT-T--------EEEEEETTEEEEEECSCHHHH--HHHHHHHHHHHHT
T ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHHHhhhcCC-C--------ceEEEEecCEEEecCchHHHH--HHHHHHHHHHHHH
Confidence 456667788899999876 45566666666421 0 013468887766654221111 1245677778888
Q ss_pred cCccccccccCCccccccccccccccccccccccceeeccccCeeEEecccccCccchhhhhHHHHHhhh-----ccccC
Q psy15012 419 ASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASF-----FDILG 493 (1085)
Q Consensus 419 ~gfnLrk~~SN~~~~~~~~i~~~d~~~~~~~K~LGl~W~~~~D~l~fk~~~~~~~~~~TKR~ilS~iasi-----yDPLG 493 (1085)
.||.+.. .... .....+.||+..+... +......-+.....|++++-|+++.+ |=| +
T Consensus 214 ~gl~l~~-----~Kc~----------f~~~~~fLG~~i~~~g--i~~~~~k~~~~~~~t~k~lr~flG~~~~yrrfi~-~ 275 (557)
T 2zd1_A 214 WGLTTPD-----KKHQ----------KEPPFLWMGYELHPDK--WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYP-G 275 (557)
T ss_dssp TTCCCCC-----SCCS----------CCSSEEETTEEECSSC--EEESCCCCCCCSCEEHHHHHHHHHHHHHHTTTST-T
T ss_pred cCCccCh-----hhcC----------CCCceEEeeEEEccCc--EEEcceecccccCCCHHHHHHHhhHHHhhhhhcc-c
Confidence 8887621 1111 1123568999886543 33321100122334888988887632 111 1
Q ss_pred C-ccchhhHHHHHHHhhhh--ccCCCCccCChhhHHHHHHHHhhhcccceeeecceeecCCCCCCcceEeeecccccc-c
Q psy15012 494 L-WCPITTTLKLLIQKTWI--CKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKD-S 569 (1085)
Q Consensus 494 l-laPv~l~~K~llq~Lw~--~~~~WDd~lp~el~~~w~~~~~~l~~~~~~~iPR~~~~~~~~~~~~~L~~F~DAS~~-a 569 (1085)
+ +.|+. .+++..-. .+..|+ ++..+.++++++.|....-+..|. . .-.+.++||||.. +
T Consensus 276 ~~~~pl~----~ll~~~~~~~~~~~Wt----~~~~~af~~lK~~L~~~p~L~~pd------~---~~~~~l~~das~~g~ 338 (557)
T 2zd1_A 276 IKVRQLS----KLLRGTKALTEVIPLT----EEAELELAENREILKEPVHGVYYD------P---SKDLIAEIQKQGQGQ 338 (557)
T ss_dssp CCCHHHH----GGGTTCCCTTCEECCC----HHHHHHHHHHHHHTSSCCCBCCCC------T---TSCCEEEEEEEETTE
T ss_pred hhHHHHH----HHhcccCCCCCceecC----HHHHHHHHHHHHHHhCccceeecC------C---CCCEEEEEecCCCCc
Confidence 1 12221 12222111 245676 567889999999888755333331 1 3468899999996 4
Q ss_pred ceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHH-HHHHHHhHHHHHHhccccccceEE-EechhhhhHhh
Q psy15012 570 YAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLG-ALIAYRSLKYVHESLDLKITNTYL-WIDNQCVIHWI 645 (1085)
Q Consensus 570 y~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a-~~l~~~l~~~v~~~l~~~i~~~~~-~tDS~ivL~wi 645 (1085)
+|++++= . ++... .+ + +.+.-++++...+|++| ++.+.+-...... +..+ .+.+ .||++...+|.
T Consensus 339 ~g~vl~q---~-~~~~~-~~-~--~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~--g~~p-~~~vp~~~~~~~~~~~ 405 (557)
T 2zd1_A 339 WTYQIYQ---E-PFKNL-KT-G--KYARMRGAHTNDVKQLTEAVQKITTESIVIW--GKTP-KFKLPIQKETWETWWT 405 (557)
T ss_dssp EEEEEEE---E-TTEEE-EE-E--EEECCSCSEECHHHHHHHHHHHHHHHHHHHH--SSCC-EEEESBCHHHHHHHHH
T ss_pred EEEEEec---C-CCcee-ee-e--ecccccccCCChHHHHHHHHHHhhhhheEEe--CCCC-CEECCCcHHHHHHHhh
Confidence 6877653 1 22221 11 1 12235678999999999 6665544433322 2222 2344 78988655554
No 21
>3nnq_A Integrase P46, N-terminal domain of moloney murine leukemia VIRU integrase; retroviral integrase, Zn finger; 2.69A {Moloney murine leukemia virus}
Probab=93.72 E-value=0.006 Score=57.43 Aligned_cols=76 Identities=17% Similarity=0.338 Sum_probs=60.6
Q ss_pred cceeeec-CCcEEecCceeecccCCCCCcceEccCCCcccceehhhhhhhcccCCcchhhhhheee---eeccCCcccee
Q psy15012 826 MGLELNE-VNILVSKGRFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLRVE---YWIPQGRSTVK 901 (1085)
Q Consensus 826 L~p~lD~-dGllRvgGRl~~s~l~~~~k~PIiLp~~h~lt~LII~~~H~~~~H~G~~~tl~~lR~~---yWI~~~r~~Vr 901 (1085)
+.-..|. ++-|...||+ ++|. .++..+|...|... |.|.+.+.+.|++. |||++..+.++
T Consensus 26 l~~~y~~~~~~w~~~Gk~-------------vlP~--~~~~eli~~lH~lT-HLg~~kl~~Ll~r~e~~~~i~~~~~~~~ 89 (114)
T 3nnq_A 26 LGAIYDKTKKYWVYQGKP-------------VMPD--QFTFELLDFLHQLT-HLSFSKMKALLERSHSPYYMLNRDRTLK 89 (114)
T ss_dssp HTCEEETTTTEEEETTEE-------------EECH--HHHHHHHHHHHHHH-CCCHHHHHHHHHHHCCSSEETTHHHHHH
T ss_pred hcceecCCCceeccCCCC-------------cCCH--HHHHHHHHHHHHHh-ccCHHHHHHHHHhhccceeeeCHHHHHH
Confidence 3344454 4556666665 6663 47889999999965 99999999999885 99999999999
Q ss_pred eeeccchhhhhhcccC
Q psy15012 902 TVLNNCVCLRKSLGNI 917 (1085)
Q Consensus 902 ~vi~~C~~l~K~lg~~ 917 (1085)
.|+.+|.+|.++-...
T Consensus 90 ~Vt~sC~aCaqvNa~~ 105 (114)
T 3nnq_A 90 NITETCKACAQVNASK 105 (114)
T ss_dssp HHHHHCHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999998875544
No 22
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=71.67 E-value=0.21 Score=51.69 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=32.3
Q ss_pred ccCCcchhhhhheeeeeccCCccceeeeeccchhhhhh
Q psy15012 876 FHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKS 913 (1085)
Q Consensus 876 ~H~G~~~tl~~lR~~yWI~~~r~~Vr~vi~~C~~l~K~ 913 (1085)
+|.|...++..|+++|||+++. |++++++|..|.+.
T Consensus 12 ~H~~~h~~~~~l~~~~~wp~~~--~~~~v~~C~~Cq~~ 47 (210)
T 3f9k_A 12 EHEKYHSNVKELSHKFGIPNLV--ARQIVNSCAQCQQK 47 (210)
T ss_dssp HHHHHCCCHHHHHHHHCCCHHH--HHHHHHTCTTTTTC
T ss_pred hHHHhccCHHHHHHhCCCChHH--HHHHHhcCHHHHcc
Confidence 5778888899999999999998 89999999988876
No 23
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=61.50 E-value=0.6 Score=48.48 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=26.2
Q ss_pred cCCcchhhhhheeeeeccCCccceeeeeccchhhhhhc
Q psy15012 877 HSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSL 914 (1085)
Q Consensus 877 H~G~~~tl~~lR~~yWI~~~r~~Vr~vi~~C~~l~K~l 914 (1085)
|.|...++..|+++|||+++ .|++++++|..|.+.-
T Consensus 12 H~~~h~~~~~l~~~~~~p~~--~~~~~v~~C~~Cq~~k 47 (219)
T 3hph_A 12 HNKWHQDAVSLHLEFGIPRT--AAEDIVQQCDVCQENK 47 (219)
T ss_dssp HHHHCCCHHHHHHHSCCCHH--HHHHHHTTCTTC----
T ss_pred HHHHhcCHHHHHHhCCCCHH--HHHHHHHcCHHHHcCC
Confidence 44444556778999999999 8999999999887654
No 24
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=42.47 E-value=29 Score=34.95 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=28.4
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCce
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRV 1060 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~v 1060 (1085)
.+...++||-|+|..+..+-..| +|+|.++..+.||..
T Consensus 23 ~g~~~~vGD~V~v~~~~~~~~p~-I~rI~~i~~~~~g~~ 60 (174)
T 1w4s_A 23 KNSMYHVGDYVYVEPAEANLQPH-IVCIERLWEDSAGEK 60 (174)
T ss_dssp ---CCCTTCEEEECCSSTTSCCE-EEEEEEEEECTTCCE
T ss_pred CCEEEECCCEEEEeCCCCCCCCE-EEEEEEEEEcCCCCE
Confidence 45689999999998765332233 999999999999975
No 25
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=40.37 E-value=7 Score=41.70 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=30.8
Q ss_pred chhHH-HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhH
Q psy15012 354 DGILE-ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQ 406 (1085)
Q Consensus 354 ~p~l~-~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlq 406 (1085)
+++.+ ++.+.++++++.|+|+.+.. .|..|++.|-|.++ +|.|++
T Consensus 44 ~~~~~~~~~~~i~~ll~~G~I~~~~s-------p~~sp~~~V~Kk~~-g~~R~~ 89 (255)
T 3fsi_A 44 SQEARLGIKPHIQRLLDQGILVPCQS-------PWNTPLLPVKKPGT-NDYRPV 89 (255)
T ss_dssp CHHHHHHHHHHHHHHHHTTSEEEECC-------SCBCCBCCC--------CCCC
T ss_pred CHHHHHHHHHHHHHHHhCCeEEecCC-------CeECceeEeecCCC-CceeEE
Confidence 45666 89999999999999997632 28899998888643 578854
No 26
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.84 E-value=54 Score=29.32 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCceEEEEEEeCCCceEeecCcceeecC
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~g~~~~Rpv~~L~pLe 1084 (1085)
....+++|++|-++-+... .|-.|+|.++.+ ||.+.+.- .--|+.-+=|+.+|-||+
T Consensus 18 ~~~~~k~g~~vaak~~d~n--~WyRakV~~v~~--~~~veVl~--~DyGn~~~V~~~~LR~L~ 74 (85)
T 2eqk_A 18 EPVKWENDMHCAVKIQDKN--QWRRGQIIRMVT--DTLVEVLL--YDVGVELVVNVDCLRKLE 74 (85)
T ss_dssp CCCCCCSSCEEEEECSSSC--CEEEEEEEEECS--SSEEEEEC--TTTCCEEEEETTTEEECC
T ss_pred cccCccCCCEEEEEeCCCC--eEEEEEEEEecC--CCeEEEEE--EccCCEEEEEccccccCC
Confidence 4689999999888733221 999999999985 77744322 234545566688888875
No 27
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.75 E-value=61 Score=28.14 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCceEEEEEEeCCCceEeecCcceeecC
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~g~~~~Rpv~~L~pLe 1084 (1085)
+...+++||.|+-.=. -+.|=-|+|+++.. +| .++|+--+++.-+=+..+|-||+
T Consensus 6 ~~~~~kvGd~clA~ws---Dg~~Y~A~I~~v~~--~~---~~~V~f~Dyn~e~v~~~~lrplp 60 (74)
T 2equ_A 6 SGFDFKAGEEVLARWT---DCRYYPAKIEAINK--EG---TFTVQFYDGVIRCLKRMHIKAMP 60 (74)
T ss_dssp SCCCCCTTCEEEEECS---SSSEEEEEEEEEST--TS---SEEEEETTSCEEEECGGGEECCC
T ss_pred CCCCCCCCCEEEEECC---CCCEEEEEEEEECC--CC---EEEEEEecCCeEEecHHHCeeCC
Confidence 4568999999998843 46899999999974 35 36777767755566777888775
No 28
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=36.32 E-value=13 Score=42.85 Aligned_cols=58 Identities=10% Similarity=-0.050 Sum_probs=41.7
Q ss_pred chhHH-HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHH
Q psy15012 354 DGILE-ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFN 417 (1085)
Q Consensus 354 ~p~l~-~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~ 417 (1085)
+|+.+ ++.+.++++++.|+|++++.. ..|.-|.+.|-|.++ +|.|++--++++.++..
T Consensus 27 ~~~~~~~~~~~i~~ll~~G~I~~v~s~-----s~~~sPv~~V~Kk~g-~k~R~~vD~r~LN~~t~ 85 (428)
T 2zd1_B 27 TEEKIKALVEICTEMEKEGKISKIGPE-----NPYNTPVFAIKKKDS-TKWRKLVDFRELNKRTQ 85 (428)
T ss_dssp CHHHHHHHHHHHHHHHHTTSEEECCTT-----CCCBBCEEEECCTTC-SSCEEEECTHHHHHHBC
T ss_pred CHHHHHHHHHHHHHHHHCCCceECCCC-----CCccCceeeccCCCC-CceEEEEechHhcCccc
Confidence 46666 899999999999999998643 237778877777664 58886533445555543
No 29
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=34.78 E-value=50 Score=35.40 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCCCCCCcEEEEec-CCCCCCCcCcceeEEeeeCCCCceEEEEEEeCCC
Q psy15012 1023 NIEPREGEVVLIRE-DKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHR 1070 (1085)
Q Consensus 1023 ~~~~~vGdiVlv~~-~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~g 1070 (1085)
...+++||.|+=-- +..-|---|+|+|+++.++.+|..+.+.||-...
T Consensus 167 ~~~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v~P~ad 215 (255)
T 2j5u_A 167 DMKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGAD 215 (255)
T ss_dssp TSCCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CCCCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEEEECCC
Confidence 45799999987653 4445666899999999999999999999998665
No 30
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=31.72 E-value=1.2e+02 Score=25.26 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=38.4
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCceEEEEEEeCC-CceEeecCcceeecC
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAH-RTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~-g~~~~Rpv~~L~pLe 1084 (1085)
+...+++||.|+..=.. =+.|=-|+|+++... +|. ++|.--+ ||.=.=|...|-||+
T Consensus 5 ~~~~~~vGd~c~A~~s~--Dg~wYrA~I~~v~~~-~~~---~~V~fvdYGn~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWSE--DGQCYEAEIEEIDEE-NGT---AAITFAGYGNAEVTPLLNLKPVE 62 (64)
T ss_dssp CSSCCCTTCEEEEECTT--TSSEEEEEEEEEETT-TTE---EEEEETTTTEEEEEEGGGEECCS
T ss_pred cCCCCCCCCEEEEEECC--CCCEEEEEEEEEcCC-CCE---EEEEEEecCCEEEEeHHHcEeCC
Confidence 55789999999998311 147999999999853 343 4455433 444455777777765
No 31
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=29.70 E-value=2.6 Score=43.30 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=29.5
Q ss_pred hhhhhhhcccCCcchhhhhheeeeeccCCccceeeeeccchhhhhh
Q psy15012 868 INDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKS 913 (1085)
Q Consensus 868 I~~~H~~~~H~G~~~tl~~lR~~yWI~~~r~~Vr~vi~~C~~l~K~ 913 (1085)
+...|... |.+. ..|+++|||+++ .++.+++.|..|.+.
T Consensus 8 ~~~~H~~~-h~~~----~~l~~~~~~p~~--~~~~~~~~C~~C~~~ 46 (212)
T 1k6y_A 8 AQEEHEKY-HSNW----RAMASDFNLPPV--VAKEIVASCDKCQLK 46 (212)
T ss_dssp HHHHHHHH-CCCH----HHHHHHHTCCHH--HHHHHHHHCTTCCCC
T ss_pred HHHhhHhh-hcCH----HHHHHhcCCCHH--HHHHHHhhChhhhcc
Confidence 44567765 7664 456779999998 478999999988764
No 32
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=27.61 E-value=1.7e+02 Score=25.27 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=40.0
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCceEEEEEEeCC-CceEeecCcceeecC
Q psy15012 1020 KTTNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAH-RTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1020 ~~~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~-g~~~~Rpv~~L~pLe 1084 (1085)
..+...+++||+|+..=.. -+.|=-|+|+++..+ ++ .+.|+--+ |+.=+=|+..|.||+
T Consensus 4 ~~~~~~~~~G~~c~A~~s~--Dg~wYRA~I~~i~~~-~~---~~~V~fiDYGN~e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 4 GSSGKVWKPGDECFALYWE--DNKFYRAEVEALHSS-GM---TAVVKFTDYGNYEEVLLSNIKPVQ 63 (78)
T ss_dssp CCCCCCCCTTCEEEEECTT--TCCEEEEEEEEECSS-SS---EEEEEETTTTEEEEEEGGGEEECC
T ss_pred CCCccCCCcCCEEEEEECC--CCCEEEEEEEEEeCC-CC---EEEEEEEcCCCeEEEcHHHeEeCC
Confidence 4466789999999988421 147999999999753 23 34555443 555555677777764
No 33
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=27.53 E-value=16 Score=42.31 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=40.1
Q ss_pred chhHH-HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHHh
Q psy15012 354 DGILE-ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNE 418 (1085)
Q Consensus 354 ~p~l~-~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~~ 418 (1085)
+|+.+ +|.+.++++++.|+|+++... |+.|++.|-|.+ ++|.|++--++++.++..+
T Consensus 48 ~~~~~~~~~~~i~~ll~~G~I~~~~sp-------~~spv~~V~Kk~-~g~~R~~~D~r~LN~~~~~ 105 (455)
T 1rw3_A 48 SQEARLGIKPHIQRLLDQGILVPCQSP-------WNTPLLPVKKPG-TNDYRPVQDLREVNKRVED 105 (455)
T ss_dssp CTTHHHHSHHHHHHHHHTTSEEEECCS-------CBBCEECCCCSS-SSCCCCEECTHHHHHTBCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEecCCc-------ccCceEEEeccC-CCcEEEchhHHHHHhhccC
Confidence 46666 899999999999999987432 888888776652 2688865334445444433
No 34
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=27.04 E-value=51 Score=33.11 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=39.7
Q ss_pred CCCCCCCcEEEEec-CCCCCCCcCcceeEEeeeCCCCceEEEEEEeCCC
Q psy15012 1023 NIEPREGEVVLIRE-DKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHR 1070 (1085)
Q Consensus 1023 ~~~~~vGdiVlv~~-~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~g 1070 (1085)
...+++||.|+=-- +..-+.--|.|+|+++.++.+|..+.+.||-...
T Consensus 106 ~~~i~~GD~vvTSGl~g~fP~GipVG~V~~v~~~~~~~~~~i~v~p~ad 154 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNFNVADIPVGEVVATTHSTDYLTREVTVKLSAD 154 (172)
T ss_dssp CCCCCTTCEEEEECCSSSCCEEEEEEEEEEEESTTCSSCCEEEEEESCC
T ss_pred CCCCCCCCEEEECCCCCcCCCCCEEEEEEEEecCCCCcEEEEEEEECCC
Confidence 45799999987653 4445666899999999999999999999998765
No 35
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=26.23 E-value=39 Score=32.44 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCC-CceEEEEEEeCCCceEeecCc
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRD-SRVRTAIVRTAHRTEIVRPIS 1078 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~D-G~vR~v~vkt~~g~~~~Rpv~ 1078 (1085)
.+..++.||-|.|..... .++ -|.|++|.+.++ =.|-.|.+..++|.+.+-||+
T Consensus 46 rs~~IkkgD~V~Vi~Gkd-KGk--~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh 100 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSK-KGQ--EGKISSVYRLKFAVQVDKVTKEKVNGASVPINLH 100 (127)
T ss_dssp CEEECCTTCEEEECSSTT-TTC--EEEEEEEEGGGTEEEEETCEEECSSSCEEECCBC
T ss_pred CcccccCCCEEEEeecCC-CCc--cceEEEEECCCCEEEEeCeEEECCCCcEEEcccc
Confidence 557899999999987652 332 599999999754 233345556677767787875
No 36
>1em9_A GAG polyprotein capsid protein P27; virus/viral protein; 2.05A {Rous sarcoma virus - prague C} SCOP: a.73.1.1
Probab=26.00 E-value=20 Score=35.30 Aligned_cols=52 Identities=12% Similarity=0.202 Sum_probs=36.1
Q ss_pred eeeeeccCCccceeeeeccch----------hhhhhcccCCCCchhhhhhHHHHhhhhcCCCCcccCCCCCCCCchhhhc
Q psy15012 888 RVEYWIPQGRSTVKTVLNNCV----------CLRKSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLE 957 (1085)
Q Consensus 888 R~~yWI~~~r~~Vr~vi~~C~----------~l~K~lg~~~lt~eeL~Tll~eiEailNSRPLt~~s~d~~~LtP~hfL~ 957 (1085)
..+||.+=-...||.....|. .+...++.+-|+..++.++.. -+|+|+||++
T Consensus 7 ~~~~w~pl~~K~ikeLk~A~~~yG~~aP~T~a~lEaL~~~~L~P~Dwk~laR------------------a~Lsgg~y~L 68 (154)
T 1em9_A 7 EGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMR------------------VILGPAPYAL 68 (154)
T ss_dssp SSEEECCCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHTSSCCCHHHHHHHHH------------------HHSCHHHHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHcCCCChHHHHHHHH------------------HHhcccchhh
Confidence 346888888888888877776 444555555566665555543 5689999999
No 37
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=25.59 E-value=1e+02 Score=27.45 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCceEEEEEEeCCCceEeecCcceeecC
Q psy15012 1023 NIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1023 ~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~g~~~~Rpv~~L~pLe 1084 (1085)
...+++||+|++.-.. -+.|--|+|+++.. +|.+.+.- .-=|+.-+=|+..|.+|+
T Consensus 25 ~~~~~~G~~c~a~~~~--d~~wyRA~I~~~~~--~~~~~V~f--vDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 25 DLTVHVGDIVAAPLPT--NGSWYRARVLGTLE--NGNLDLYF--VDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCCTTCEEEEEETT--TTEEEEEEEEEECT--TSCEEEEE--TTTCCEEEECGGGCEECC
T ss_pred CCCCCCCCEEEEEECC--CCeEEEEEEEEECC--CCeEEEEE--EcCCCeEEEEHHHhhhcC
Confidence 4579999999997311 16899999999963 45544322 233445566777777764
No 38
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=24.16 E-value=58 Score=32.10 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCC-ceEEEEEEeCCCceEeecCc
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDS-RVRTAIVRTAHRTEIVRPIS 1078 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG-~vR~v~vkt~~g~~~~Rpv~ 1078 (1085)
.+..++.||-|.|.... ..++ -|.|++|.+.++- .|-.|.+..++|.+.+.||+
T Consensus 45 Rs~~IkKGD~V~Vi~Gk-dKGk--~GkVl~V~~kk~~V~VEGVN~~K~~G~~~eapIh 99 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGS-YKGR--EGKVVQVYRRRWVIHVERITREKVNGSTVNVGIH 99 (150)
T ss_dssp SEEECCSSSEEEECSST-TTTC--EEEEEEEETTTTEEEETTCEEECTTSCEEECCBC
T ss_pred cccccCCCCEEEEeecC-CCCc--cceEEEEEcCCCEEEEeCcEEEeCCCCEEecccc
Confidence 55789999999998765 2332 6999999986542 22345566677867777775
No 39
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=22.79 E-value=27 Score=41.65 Aligned_cols=59 Identities=15% Similarity=0.028 Sum_probs=39.0
Q ss_pred chhHH-HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHHh
Q psy15012 354 DGILE-ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNE 418 (1085)
Q Consensus 354 ~p~l~-~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~~ 418 (1085)
+|+.+ ++.+.++++++.|+|+++... ..|.-|.+.|-|.++ +|.|++--++++.++..+
T Consensus 27 ~~~~~~~~~~~i~~ll~~G~I~~~~~~-----s~~~spv~~V~Kk~g-~k~R~~vD~r~LN~~t~~ 86 (555)
T 1mu2_A 27 TKEKIEALKEICEKMEKEGQLEEAPPT-----NPYNTPTFAIKKKDK-NKWRMLIDFRELNKVTQD 86 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHTSEEECCTT-----CCCBBCEEECCCCC-----CEEECTHHHHHHBCC
T ss_pred CHHHHHHHHHHHHHHHHCCCeEECCCC-----CCCCCceEEecCCCC-CceEEEEehHHhhhhCcc
Confidence 46666 899999999999999998432 237778877766653 588865334555555543
No 40
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=22.31 E-value=72 Score=30.34 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=35.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCc-eEEEEEEeCCCceEeecCc
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSR-VRTAIVRTAHRTEIVRPIS 1078 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~-vR~v~vkt~~g~~~~Rpv~ 1078 (1085)
....++.||.|.|..... .+ ..|.|++|.+.++-. |-.+.++-++|.+.+-||+
T Consensus 39 r~~~IkkGD~V~Vi~G~d-KG--k~GkV~~V~~k~~~V~VEgvn~kK~~Gg~~e~pIh 93 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDF-AG--EEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLD 93 (120)
T ss_dssp SEEECCTTCEEEECSSTT-TT--CEEEEEEEETTTTEEEETTCEEECSSSCEEECCBC
T ss_pred ccccccCCCEEEEEecCC-CC--CEEEEEEEECCCCEEEEeCeEeEcCCCCEEEeeec
Confidence 446799999999987542 22 789999999865422 1223333355547888874
No 41
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=21.49 E-value=2e+02 Score=23.34 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=37.4
Q ss_pred CCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCceEEEEEEeCC-CceEeecCcceeecC
Q psy15012 1025 EPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAH-RTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1025 ~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~-g~~~~Rpv~~L~pLe 1084 (1085)
..++||+|+..=.. -+.|=-|+|+++.++ +| .++|+--+ |+.-+=|+..|.||+
T Consensus 3 ~~~~G~~c~A~~s~--Dg~wYrA~I~~i~~~-~~---~~~V~f~DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE--DGCIYPATIASIDFK-RE---TCVVVYTGYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTT--TSCEEEEEEEEEETT-TT---EEEEEETTTTEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECC--CCCEEEEEEEEEcCC-CC---EEEEEEEcCCCEEEEcHHHeeCCC
Confidence 57899999988311 147999999999653 33 35566554 655566778887775
No 42
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.25 E-value=1e+02 Score=28.21 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=37.3
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCCceEEEEEEe-CCCceEeecCcceeecC
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRT-AHRTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG~vR~v~vkt-~~g~~~~Rpv~~L~pLe 1084 (1085)
....+++||+|++.-.. -+.|--|+|+++.+ ++.+ .|.- -=|+.-+=|...|.+|+
T Consensus 29 ~~~~~~~G~~c~a~~~~--d~~wyRA~V~~~~~--~~~~---~V~fvDyGn~e~v~~~~Lr~l~ 85 (110)
T 2diq_A 29 EDLTVHVGDIVAAPLPT--NGSWYRARVLGTLE--NGNL---DLYFVDFGDNGDCPLKDLRALR 85 (110)
T ss_dssp CCCCCCTTCEEEECCTT--TCSCEEEEECCCCS--SSCE---EEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCCCCEEEEEECC--CCeEEEEEEEEECC--CCeE---EEEEEeCCCeEEEehHHhhcCc
Confidence 34578999999987411 14799999999975 3544 3433 23445566677777764
No 43
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=20.55 E-value=1.2e+02 Score=30.94 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCCCCCCCcEEEEecCCC-CCCCcCcceeEEeeeCCCCceEEEEEEeCCCceEeecCcceeecC
Q psy15012 1022 TNIEPREGEVVLIREDKM-PRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLE 1084 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~-pr~~W~lGrI~~v~pg~DG~vR~v~vkt~~g~~~~Rpv~~L~pLe 1084 (1085)
....+++||.|-.+-... .-..|-||+|+++.. +.+..-+-.+-..+.+.++=+-.++||||
T Consensus 41 ~~~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~-~~~rYeV~D~d~eg~~~~~~s~~~IIPLP 103 (180)
T 3mea_A 41 GDYVARPGDKVAARVKAVDGDEQWILAEVVSYSH-ATNKYEVDDIDEEGKERHTLSRRRVIPLP 103 (180)
T ss_dssp TTCCCCTTCEEEEEEECCC--EEEEEEEEEEEET-TTTEEEEEECCTTCCEEEEEEGGGEEECC
T ss_pred CCcccCCCCEEEEEcCCCCCCccEEEEEEEEEcC-CCCEEEEecCCCCCceeEEeCHHHEEECC
Confidence 556899999998885321 236899999999763 33333332332222235788889999997
No 44
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.08 E-value=67 Score=30.59 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcCcceeEEeeeCCCC-ceEEEEEEeCCCceEeecCc
Q psy15012 1022 TNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDS-RVRTAIVRTAHRTEIVRPIS 1078 (1085)
Q Consensus 1022 ~~~~~~vGdiVlv~~~~~pr~~W~lGrI~~v~pg~DG-~vR~v~vkt~~g~~~~Rpv~ 1078 (1085)
....++.||.|.|.... -.+ .-|.|.+|.+.++- .|-.+.+...+|...+.||+
T Consensus 42 r~~~IkkGD~V~Vi~Gk-dKG--k~GkV~~V~~k~~~V~VEgvn~~k~~G~~~e~pIh 96 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGD-YKG--HEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIH 96 (121)
T ss_dssp SEEECCSSSEEEECSSS-CSS--EEEEEEEEETTTTEEEETTCEEECSSSCEEECCBC
T ss_pred cccccccCCEEEEeecC-CCC--cEeEEEEEEecCCEEEEeCeEEEecCCcEEEcccC
Confidence 45689999999998754 233 35999999987532 12234555667757777775
Done!