RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15012
(1085 letters)
>gnl|CDD|147520 pfam05380, Peptidase_A17, Pao retrotransposon peptidase.
Corresponds to Merops family A17. These proteins are
homologous to aspartic proteinases encoded by
retroposons and retroviruses.
Length = 159
Score = 135 bits (341), Expect = 1e-36
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 478 KRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNS 537
KR +LS AS FD LGL P+T K+ +Q+ W KLGW++EI +E + +++
Sbjct: 3 KREVLSQVASIFDPLGLLAPVTVRAKIFLQEIWRQKLGWDEEIPEELSQRWLAFRKQLST 62
Query: 538 VGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAP 597
+ I V RY+ S N +LH F DA++ +YA VY + G E V+LV AK+R+AP
Sbjct: 63 LQQIRVPRYV--PYSPARNIQLHGFCDASEKAYAAAVYWRVEEGEEIQVSLVAAKTRVAP 120
Query: 598 VKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLW 635
+K ++PRLEL AL+ R + V D+K T+TY W
Sbjct: 121 LKTVSIPRLELCAALLLTRLARAVKPEHDVKPTDTYCW 158
>gnl|CDD|238822 cd01644, RT_pepA17, RT_pepA17: Reverse transcriptase (RTs) in
retrotransposons. This subfamily represents the RT
domain of a multifunctional enzyme. C-terminal to the RT
domain is a domain homologous to aspartic proteinases
(corresponding to Merops family A17) encoded by
retrotransposons and retroviruses. RT catalyzes DNA
replication from an RNA template and is responsible for
the replication of retroelements.
Length = 213
Score = 39.6 bits (93), Expect = 0.004
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 398 SVDYECEIQDFVETARKVFNEASLNLREWATNCPN------DYYKNMDKTLINTQENQSV 451
S D E + + + + NLR+WA+N + +D+ T++
Sbjct: 147 STDTLNEAVNVAKRLIALLKKGGFNLRKWASNSQEVLDDLPEERVLLDRDSDVTEK---T 203
Query: 452 LGMNWNVHKD 461
LG+ WN D
Sbjct: 204 LGLRWNPKTD 213
>gnl|CDD|151322 pfam10873, DUF2668, Protein of unknown function (DUF2668). Members
in this family of proteins are annotated as Cysteine and
tyrosine-rich protein 1, however currently no function
is known.
Length = 154
Score = 31.4 bits (71), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 81 IPPPSTPTP----IPAGPPQYSGPARE 103
+PPP +P P + PP Y G +R+
Sbjct: 128 LPPPYSPAPQASAQRSPPPPYPGNSRK 154
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and
toxic compound extrusion (MATE) family. The integral
membrane proteins from the MATE family are involved in
exporting metabolites across the cell membrane and are
responsible for multidrug resistance (MDR) in many
bacteria and animals. MATE has also been identified as a
large multigene family in plants, where the proteins are
linked to disease resistance. A number of family members
are involved in the synthesis of peptidoglycan
components in bacteria. This subfamily, which is
restricted to eukaryotes, contains vertebrate solute
transporters responsible for secretion of cationic drugs
across the brush border membranes, yeast proteins
located in the vacuole membrane, and plant proteins
involved in disease resistance and iron homeostatis
under osmotic stress.
Length = 436
Score = 32.2 bits (74), Expect = 1.7
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 480 LLLSVYASF---FDILGLWCPIT--TTLKLLIQKTWICKLGWEDEIED 522
L + + +F + GLW + L+ +I I + W+ E E
Sbjct: 389 LPVGLLLAFVLGLGLKGLWIGLIAGLILQAVILLLIILRTDWDKEAEK 436
>gnl|CDD|191311 pfam05599, Deltaretro_Tax, Deltaretrovirus Tax protein. This
family consists of Rex/Tax proteins from human and
simian T-cell leukaemia viruses. The exact function of
these proteins is unknown. Tax is the viral
transactivator; is it a nuclear phosphoprotein that
interacts with CREB, coactivator CBP/p300 and PCAF to
form a multiprotein complex, which activates viral LTR
and stimulates virus expression. Tax is also involved in
deregulated expression of numerous cellular genes
leading to T-cell leukaemia. Rex is a nucleolar post
transcriptional regulator that facilitates export to the
cytoplasm of viral RNA not or incompletely spliced
[personal communication, Dr. S Nicot].
Length = 87
Score = 29.2 bits (65), Expect = 2.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 65 FCTKYRRPCLKGEGVHIPPPSTPTPIPAGPPQYSGPAREDRARL 108
C++ P +G P P+ P+ G P + GP R R RL
Sbjct: 26 LCSRRLVPHFRGALFGPPAPACPSGHLPGAPAHLGPHRWTRCRL 69
>gnl|CDD|226524 COG4037, COG4037, Predicted membrane protein [Function unknown].
Length = 163
Score = 29.5 bits (66), Expect = 6.1
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 956 LELKGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSY 992
LE G SQ ++P GK + I W K +
Sbjct: 73 LESPGVTKSQYPQFEPNLGKITAYLTPIARWLKHNTR 109
>gnl|CDD|220618 pfam10179, DUF2369, Uncharacterized conserved protein (DUF2369).
This is a proline-rich region of a group of proteins
found from plants to fungi. The function is not known.
Length = 300
Score = 29.5 bits (66), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 982 VIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKQGKTTNIEPREGEV 1031
V L T YLDVF H R+ + V KQ +T +E ++G++
Sbjct: 19 VSGLKPDTTYYLDVFAVHQKRNNSSAYLGTTIVTRKQNRTAPVELKDGKL 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 54,835,101
Number of extensions: 5412216
Number of successful extensions: 4233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4229
Number of HSP's successfully gapped: 15
Length of query: 1085
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 978
Effective length of database: 6,191,724
Effective search space: 6055506072
Effective search space used: 6055506072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.7 bits)