RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15012
(1085 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.5 bits (185), Expect = 8e-14
Identities = 94/577 (16%), Positives = 168/577 (29%), Gaps = 222/577 (38%)
Query: 218 PFTLSR-TLE-----PLGVFKDNLCLWETLFGNVLSGTKYITVDHSDG--QENNVNSVLF 269
P TLS +LE P F L E F +L + ++G ++ +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQ-FNKILP-------EPTEGFAADDEPTTPA- 58
Query: 270 VDVHFRQDLSESLPRFWDLQTLG----IKDPHDVSNDD----LALQQFDSTVQFENN--R 319
E + +F LG + +P V D L L +F++ N+
Sbjct: 59 ----------ELVGKF-----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 320 YAVTFPWKNSDRIVQS-----NYGLALGQLKSVIKRHANDGILEACKQ-------TFDDQ 367
A +N +V++ NY A K + +N + A + F Q
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 368 LAKGILEIVEDEKGDNKLVHYFPYHAVLRESVD-YECEIQDFVETARKVFNEAS------ 420
G+ YF LR+ Y + D ++ + + +E
Sbjct: 164 -------------GNTD--DYFEE---LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 421 -------LNLREWATN---CPNDYYKNMDKT-----LIN-TQENQ-----SVLGMNWNVH 459
LN+ EW N P+ Y + LI Q +LG
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 460 KDDLSLKFEYHYNNEKVCKRLLLSVYA--------SFFDILGLWCPITTTLKLLIQKTWI 511
+ L + L++ A SFF + + +L +I
Sbjct: 264 RSYLK--------GATGHSQGLVTAVAIAETDSWESFFVS------VRKAITVLF---FI 306
Query: 512 CKLGWE----------------DEIE-------------DEDKTDFFRIINCMNSVGNIP 542
G D +E + + +N NS ++P
Sbjct: 307 ---GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS--HLP 361
Query: 543 VGRYLHASLSC-DTNY-------ELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSR 594
G+ + SL N L+ + + K+ SG + +SR
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-------AKAPSGLD--------QSR 406
Query: 595 I-----------------APVKRPTL-PRLELLGALIAYRSLKYVHESLDLKIT--NTYL 634
I +P L P +L+ + ++ + + D++I +T+
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK--DIQIPVYDTFD 464
Query: 635 WIDNQ------------CV----IHWIKGTKTLPTFI 655
D + C+ + W T+ T I
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 46.2 bits (109), Expect = 7e-05
Identities = 85/604 (14%), Positives = 161/604 (26%), Gaps = 222/604 (36%)
Query: 514 LGW-EDEIEDEDKTDFFRIIN-CMNSVGNIPVGRYL-----H---ASLSCDTNYELHAFS 563
LG+ +E F +++N C+ N YL H A L + + L
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFEN----CYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 564 DATKDSYAGCVY-------------LKSVSGNETNVNLVFA------------------- 591
+ K+ + ++V + +F
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 592 KSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTKTL 651
+ + + + L L + L+ ++ W++
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLN--------------ILEWLENPSNT 225
Query: 652 PT---FINNRVKEIKSSTFPIIF-----RYIPTFC-----NPADIACRGSLK-LENCELW 697
P ++ + + P+I Y+ P ++ R LK
Sbjct: 226 PDKDYLLSIPI------SCPLIGVIQLAHYV-VTAKLLGFTPGEL--RSYLKGATGHS-- 274
Query: 698 WKG---PPFLSLATEQWPEFPIDSE-------------QEKFEDLAEDITLVSKHVPNTN 741
+G ++ W F + E + + + +++ + N N
Sbjct: 275 -QGLVTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-N 331
Query: 742 ENEIRKPVPINEEKFTSFHKLINVTCYVLKFINIKCKKINSYG------HITGEEYKNGK 795
E P P +++++ + + K NS+ I+ NG
Sbjct: 332 EGV---PSP-----------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS---LVNGA 374
Query: 796 EMWIKYIQHVSFSSTIDQLKAGS-RDLLALQMGLELNEV--NILVSKGRFREIQFRK--- 849
+ + VS G + L L + L + + S+ F E RK
Sbjct: 375 KNLV-----VS----------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKF 416
Query: 850 GESF-PVLLPRKCHITTIIINDIHRQCFHS--------GVSQTLSVLRVEYWIPQGRSTV 900
F PV P FHS +++ L V + + V
Sbjct: 417 SNRFLPVASP-----------------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 901 KTVLNNCVCLRKSLGNIL--LTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLEL 958
+ LR G+I + + L V+ E+ + H L+
Sbjct: 460 YDTFDGSD-LRVLSGSISERIVD-CIIRLPVKWETTTQFKAT-------------HILD- 503
Query: 959 KGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSYLDVFWRHWSR----SYLDSLKDRRQV 1014
+ P G + + K GT R LD D
Sbjct: 504 ----------FGP--GGASGLGVLTHRNKDGT---------GVRVIVAGTLDINPD-DDY 541
Query: 1015 MFKQ 1018
FKQ
Sbjct: 542 GFKQ 545
Score = 42.3 bits (99), Expect = 0.001
Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 47/136 (34%)
Query: 320 YAVTFP-----WKNSDRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILE 374
Y T W +D + YG + IL+
Sbjct: 1636 YK-TSKAAQDVWNRADNHFKDTYGFS-------------------------------ILD 1663
Query: 375 IVEDEKGDNKLVHYFPYHA-VLRE---SVDYECEIQDFVETARKVFNEASLNLREWATNC 430
IV + N +H+ +RE ++ +E I D K+F E + + +
Sbjct: 1664 IVIN-NPVNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 431 PNDYYKNMDKTLINTQ 446
+ T TQ
Sbjct: 1722 EKG---LLSAT-QFTQ 1733
Score = 41.6 bits (97), Expect = 0.002
Identities = 47/297 (15%), Positives = 86/297 (28%), Gaps = 113/297 (38%)
Query: 744 EIRKPVPINEEKFTSFHKLINVTCYVLK--FINIKCKKINSYGHITGEEYKNGKEMWIKY 801
E VP T+ L+ F K + G +E E+ K+
Sbjct: 17 EHVLLVP------TASF----FIASQLQEQFN--KILPEPTEGFAADDEPTTPAELVGKF 64
Query: 802 IQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKGRFREIQFRKGESFPVLLPRKC 861
+ +V SS ++ K G D + L + L F E + +G
Sbjct: 65 LGYV--SSLVEPSKVGQFDQV-LNLCLT-----------EF-ENCYLEG----------- 98
Query: 862 HITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNILLTR 921
NDIH ++++ + I K + + ++
Sbjct: 99 -------NDIHALAAKLLQENDTTLVKTKELI-------KNYITARIMAKRP-------- 136
Query: 922 TQLHTLLVEIESVMNSRPLGYVSEEDFMI---------TPRHFLELKGDMLSQE--ETYD 970
+ NS V E + + T +F EL ++ +TY
Sbjct: 137 ---------FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL------RDLYQTYH 181
Query: 971 P-----IRGKTATFRNVIQ-------LWKKGTSYLDVFWRHW--------SRSYLDS 1007
I+ T +I+ ++ +G L++ W + YL S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQG---LNI--LEWLENPSNTPDKDYLLS 233
Score = 41.2 bits (96), Expect = 0.003
Identities = 44/304 (14%), Positives = 88/304 (28%), Gaps = 115/304 (37%)
Query: 410 ETARKVFNEASLNLRE---WA-----TNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKD 461
+ A+ V+N A + ++ ++ N P + T+ E + N+
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPV------NLTIHFGGEKGKRIRENY----- 1688
Query: 462 DLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIE 521
++ FE + + +++ + + E
Sbjct: 1689 -SAMIFETIVDGKLKTEKIFKEINEH-----------------------STSYTFRSEKG 1724
Query: 522 DEDKTDF------------FRIINCMNSVGNIPVGRYL--H-----ASLSCDTNYELHAF 562
T F F + S G IP H A+L+ + + +
Sbjct: 1725 LLSATQFTQPALTLMEKAAFED---LKSKGLIPADATFAGHSLGEYAALASLADV-M-SI 1779
Query: 563 SDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLEL---LGALIAYR--- 616
V +VF + + +PR EL +IA
Sbjct: 1780 ESL--------------------VEVVFYRGMTM---QVAVPRDELGRSNYGMIAINPGR 1816
Query: 617 --------SLKYVHESLDLKITNTYLWI--DN----QCVI--HWIKGTKTLPTFIN-NRV 659
+L+YV E + K T + I N Q V ++ T+ +N ++
Sbjct: 1817 VAASFSQEALQYVVERVG-KRTGWLVEIVNYNVENQQYVAAGD-LRALDTVTNVLNFIKL 1874
Query: 660 KEIK 663
++I
Sbjct: 1875 QKID 1878
Score = 38.5 bits (89), Expect = 0.017
Identities = 51/301 (16%), Positives = 88/301 (29%), Gaps = 124/301 (41%)
Query: 817 GSRDLLALQ---MGLELNEVNILVSKGRFREI--QFRKGESFPVLLPRKCHITTIIINDI 871
GS Q MG++L + ++ + F+ F I I+IN+
Sbjct: 1625 GS------QEQGMGMDLYK-TSKAAQDVWNRADNHFKDTYGFS--------ILDIVINNP 1669
Query: 872 HRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNI-------------- 917
H G + +R Y +T+++ + K I
Sbjct: 1670 VNLTIHFG-GEKGKRIRENY----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 918 LLTRTQLHT----LLVE--IESVMNSRPLGYVSEEDFMITPRHFLELKGDMLSQEETYDP 971
LL+ TQ T L+E + S+ G + + H L G E Y
Sbjct: 1725 LLSATQ-FTQPALTLMEKAAFEDLKSK--GLIPADATFAG--HSL---G-----E--Y-- 1767
Query: 972 IRGKTA--------TFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKQGKTTN 1023
A + +++++ VF+R G T
Sbjct: 1768 ----AALASLADVMSIESLVEV---------VFYR--------------------GMTMQ 1794
Query: 1024 IEPREGEVVLIREDKMPRASWPYGVIVKLNPSR------DSRVRTAIVRTAHRT----EI 1073
+ E+ YG ++ +NP R ++ + R RT EI
Sbjct: 1795 VAVPRDEL----------GRSNYG-MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 1074 V 1074
V
Sbjct: 1844 V 1844
Score = 30.0 bits (67), Expect = 5.2
Identities = 32/180 (17%), Positives = 44/180 (24%), Gaps = 69/180 (38%)
Query: 1 MFVFGTAGFPPILSSFSLRFRDDKTLAVPSVK----PLKKKTSTIEGRALEHQAPSRAGT 56
V +G P L +L R K A + P ++ R L +P
Sbjct: 376 NLV--VSGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRFLPVASP----- 426
Query: 57 RHRGLPYLFCTKYRRPC-------LKGEGVHIPPPSTPTPIPAGPPQY-----------S 98
F + P L V P+ Y S
Sbjct: 427 --------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV------YDTFDGSDLRVLS 472
Query: 99 GPAREDRARLIVFAVARIH---RTRLLAT---------LSGLKLEAEITNLHSSLTYRKK 146
G E I+ + T+ AT SGL LT+R K
Sbjct: 473 GSISERIVDCII--RLPVKWETTTQFKATHILDFGPGGASGL----------GVLTHRNK 520
Score = 29.2 bits (65), Expect = 9.7
Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 53/174 (30%)
Query: 231 FKDNLCLWETLFGNVLSGTKYITVDHSDGQENNVNSVLFVDVHFRQDLSESLPR------ 284
D E +F + + T G +L F Q P
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKG-------LLS-ATQFTQ------PALTLMEK 1741
Query: 285 --FWDLQTLGIKDPHDV----SNDDL----ALQ------QFDSTVQFENNR---YAVTFP 325
F DL++ G+ S L AL +S V+ R V P
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHS---LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 326 WKNSDRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAK---GILEIV 376
D + +SNYG+ V + + + +++ K ++EIV
Sbjct: 1799 ---RDELGRSNYGMIAINPGRVAASFSQEALQYVV-----ERVGKRTGWLVEIV 1844
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 1e-06
Identities = 102/691 (14%), Positives = 197/691 (28%), Gaps = 230/691 (33%)
Query: 270 VDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFEN--NRYAVTFPW- 326
++ LS F + KD D+ L+ ++ D + ++ + F W
Sbjct: 14 HQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WT 70
Query: 327 --KNSDRIVQ--------SNYGLALGQLKSVIK--------------RHANDGILEACKQ 362
+ +VQ NY + +K+ + R ND Q
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN------Q 124
Query: 363 TFDD----------QLAKGILE-------IVEDEKGDNK--LVHYFPYHAVLRESVDYEC 403
F +L + +LE +++ G K + V Y+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-----DVCL---SYKV 176
Query: 404 EIQ-DFVETARKVFNEASLNLREWAT----NCP-------NDYYKNMDKTLINTQENQSV 451
+ + DF K+F W N P +D + ++ S
Sbjct: 177 QCKMDF-----KIF---------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 452 LGMNWNVHKDDLSLKFEYH-YNN----------EKV-------CKRLLLSVYASFFDILG 493
+ + + + +L + Y N K CK LL + + D L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 494 LWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIP----------- 542
TTT L + DE K+ + ++C ++P
Sbjct: 283 ---AATTTHISLDHHSM----TLT---PDEVKSLLLKYLDC--RPQDLPREVLTTNPRRL 330
Query: 543 --VGRYLHASLSCDTNYELHAFSDATKDSYAGCV-YLKSVSGNETNVNL-VFAKSRIAPV 598
+ + L+ N++ H D + L+ + L VF S A +
Sbjct: 331 SIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--AHI 387
Query: 599 KRPTLPRL----------ELLGALIAYRSLK--------YVHE-SLDLKITNTYLWIDNQ 639
L + ++ L Y ++ + L+LK+ ++N+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-----LENE 442
Query: 640 CVIHWIKGTKTLPTFIN--NRVKEIKSSTF--PIIFRYIPTFCNPADIACRGSLKLENCE 695
+H +++ ++ N K S P + +Y + I L+N E
Sbjct: 443 YALH-----RSI---VDHYNIPKTFDSDDLIPPYLDQYFYSH-----IG----HHLKNIE 485
Query: 696 LWWKGPPFLSLATEQWPEFPIDSEQEKFEDLAEDITLVSKHVPNTNENEIRKPVPINEEK 755
E+ F F D E +IR
Sbjct: 486 H-----------PERMTLFR-----MVFLDF------------RFLEQKIRHDSTAWNAS 517
Query: 756 FTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLK 815
+ + L + Y +I C Y E + I + +
Sbjct: 518 GSILNTLQQLKFY-KPYI---CDNDPKY------------ERLVNAILDFLPKIEENLIC 561
Query: 816 AGSRDLLALQMGLELNEVNILVSKGRFREIQ 846
+ DL L++ L + E + + +++Q
Sbjct: 562 SKYTDL--LRIAL-MAEDEAIFEEA-HKQVQ 588
Score = 51.4 bits (122), Expect = 2e-06
Identities = 53/331 (16%), Positives = 95/331 (28%), Gaps = 98/331 (29%)
Query: 7 AGFPPILSSFSLRFRDDKTLAVPSVKPLKKKTSTIEGRALEHQAPSRAGTRHRGLPYLFC 66
P LS + RD K +TI +L P A R +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKM---FDRL 378
Query: 67 TKYRRPCLKGEGVHIPPPSTPTPIPAGPPQYSGPAREDRARLIVFAVARIHRTRLLA--- 123
+ + HIP + ++V ++H+ L+
Sbjct: 379 SVFP------PSAHIPTILLSL--------IWFDVIKSDVMVVV---NKLHKYSLVEKQP 421
Query: 124 -----TLSGLKLE-----AEITNLHSSL--TYRKKTR-------PPSLECSLTGHLGRTM 164
++ + LE LH S+ Y PP L+ H+G
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-- 479
Query: 165 IVLLEGVAPNQHFLLNVILLMHPENG------TILGLELQFICCPSLSKSRNVPPNCKGP 218
H L + E+ ++ L+ +F+ K R+
Sbjct: 480 -----------H-------LKNIEHPERMTLFRMVFLDFRFL----EQKIRHDSTAWNAS 517
Query: 219 FTLSRTLEPLGVFKDNLCLWETLFGNVLSGTKYITVDHSDGQENNVNSVLFVDVHFRQDL 278
++ TL+ L +K YI D+ E VN++L F +
Sbjct: 518 GSILNTLQQLKFYK-----------------PYIC-DNDPKYERLVNAIL----DFLPKI 555
Query: 279 SESLPR--FWDLQTLGIKDPHDVSNDDLALQ 307
E+L + DL + + + ++ Q
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 49.1 bits (116), Expect = 8e-06
Identities = 55/460 (11%), Positives = 120/460 (26%), Gaps = 133/460 (28%)
Query: 655 INNRVKEIKSSTFPIIFRYIPTFCNPADIAC-------RGSLKLENCE------------ 695
++ E + I+ + F + C + L E +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 696 --LWWKGPPFLSLATEQWPEFPIDSEQEKFEDLAEDI------------TLVSKHVPNTN 741
L+W LS E +F + + ++ L I + + N
Sbjct: 65 LRLFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 742 ENEIRKPVPIN-EEKFTSFHKLI-------NVTCY-------------VLKFINIKCKKI 780
+N++ ++ + + + + NV V ++CK
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM- 180
Query: 781 NSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKG 840
+ K W+ S + ++ L+ L Q+ + S
Sbjct: 181 ------------DFKIFWLNLKNCNSPETVLEMLQK-----LLYQIDPNWTSRSDHSSNI 223
Query: 841 RFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLR-VEYWIPQGRST 899
+ R + + ++ + + C L VL V +
Sbjct: 224 KLRIHSIQA------------ELRRLLKSKPYENC--------LLVLLNV--QNAK---A 258
Query: 900 VKTVLNNCVCL---R-KSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHF 955
+C L R K + + L T H L + + +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLL----LKY 310
Query: 956 LELKGDMLSQE-ETYDP--IRGKTATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRR 1012
L+ + L +E T +P + + R+ + W W+H D L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--------NWKH---VNCDKLTTII 359
Query: 1013 QVMFKQGKTTNIEPREGEVVLIREDKMPRASWPYGVIVKL 1052
+ + + + A P ++ +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPS----AHIPTILLSLI 395
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 30.4 bits (68), Expect = 2.6
Identities = 16/77 (20%), Positives = 18/77 (23%), Gaps = 2/77 (2%)
Query: 28 VPSVKPLKKKTSTIEGRALEHQAPSRAGTRHRGLPYLFCTKYRRPCLKG--EGVHIPPPS 85
P K A P RG+P L G GV P
Sbjct: 81 TVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140
Query: 86 TPTPIPAGPPQYSGPAR 102
TP G + A
Sbjct: 141 VMTPQGRGTVAAAAAAA 157
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 4.5
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 396 RESVDYECEIQDFVETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQ 449
RE + D + RE A ++ + + + + N
Sbjct: 91 REEQRKRLQELDAASKVMEQ------EWREKAKKDLEEWNQRQSEQVEKNKINN 138
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase,
structural genomics, PSI-2; 2.00A {Bifidobacterium
adolescentis ATCC15703}
Length = 515
Score = 30.0 bits (68), Expect = 4.8
Identities = 8/67 (11%), Positives = 14/67 (20%), Gaps = 12/67 (17%)
Query: 989 GTSYLDVFWRHWSRSYLDSLKDRRQVMFKQGKTTNIEPREGEVVLIREDKMPRASWPYGV 1048
GT Y D + R + + + E + +P P
Sbjct: 201 GTIYYDAASNEYRRDLIAMVLEAA------------EGAKAAQSHAEAIVLPTVLGPRDA 248
Query: 1049 IVKLNPS 1055
Sbjct: 249 APVKADP 255
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 6.0
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 6/28 (21%)
Query: 133 EITNLHSSLTYRKKTRP---PSLECSLT 157
+ L +SL K P+L T
Sbjct: 21 ALKKLQASL---KLYADDSAPALAIKAT 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,425,528
Number of extensions: 995940
Number of successful extensions: 1729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1710
Number of HSP's successfully gapped: 16
Length of query: 1085
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 981
Effective length of database: 3,798,009
Effective search space: 3725846829
Effective search space used: 3725846829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)