RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15012
         (1085 letters)



>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 333

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 17/146 (11%), Positives = 37/146 (25%), Gaps = 4/146 (2%)

Query: 390 PYHAVLRESVDYECEIQDFVETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQ 449
           PY  V         EI+D +   R + N           N P           +      
Sbjct: 59  PYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAD 118

Query: 450 SVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKT 509
                 +    +   +             R  L  +    + + +   +    ++L +  
Sbjct: 119 H-ELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVE---EVLDKSG 174

Query: 510 WICKLGWEDEIEDEDKTDFFRIINCM 535
           +   L  E  IE + + +       +
Sbjct: 175 YREMLKAERTIEAQSRLENLDEFLSV 200


>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
           halodurans [TaxId: 86665]}
          Length = 132

 Score = 28.7 bits (64), Expect = 1.9
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 597 PVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTK 649
           P+   T    E L  +   R LK  +           ++ ++Q  I W+K  K
Sbjct: 38  PIPIGTNNMGEFLAIVHGLRYLKERNSRK-------PIYSNSQTAIKWVKDKK 83


>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 130

 Score = 28.1 bits (62), Expect = 2.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 65 FCTKYRRPCLKGE 77
          + TKYR   L  E
Sbjct: 17 WATKYRHQVLVDE 29


>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter
          pylori [TaxId: 210]}
          Length = 125

 Score = 27.7 bits (61), Expect = 3.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 65 FCTKYRRPCLKGE 77
          +C KYRR  L G 
Sbjct: 18 WCPKYRRKVLVGA 30


>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 122

 Score = 27.0 bits (59), Expect = 6.4
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 45 ALEHQAPSRAGTRHRGLPYLFCTKYRRPCLKGEGVHIPP 83
           +    P         L +  C+ Y   CL+     +PP
Sbjct: 37 EVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPP 75


>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 217

 Score = 27.5 bits (61), Expect = 7.3
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 103 EDRARLIVFAVARIHRTRLLATLSGL--KLEAEITNLHSSLTYRKKTRPPSLECSLTGHL 160
           E  AR I+  +  +H+      +     K       + + LT  K   P         H 
Sbjct: 32  EQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHW 91

Query: 161 GRTMIVLLEGVAPNQHFLLNVILLMHPENGTILGLE 196
              +  L+   A    +L    L+       ILG+E
Sbjct: 92  RFVLQRLVFLAA-FVVYLETETLVTREAVTEILGIE 126


>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
           virus [TaxId: 11089]}
          Length = 299

 Score = 27.6 bits (61), Expect = 7.7
 Identities = 7/46 (15%), Positives = 12/46 (26%)

Query: 918 LLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLELKGDML 963
            +   +   LL  +E         Y  E          + L+ D  
Sbjct: 165 HVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQR 210


>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474
          {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 130

 Score = 26.6 bits (58), Expect = 8.1
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 65 FCTKYRRPCLKGE 77
          +  K+RR  L  E
Sbjct: 18 WIPKHRRNTLVNE 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,082,558
Number of extensions: 198216
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 12
Length of query: 1085
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 990
Effective length of database: 1,103,246
Effective search space: 1092213540
Effective search space used: 1092213540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)