BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15014
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 161 LASLNKNNTFRFQI--IDLF-DDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQ 217
+ S+++N F ++ +++ D RD L K+N+ +HED YV G T + + S +
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDL-LDVSKTNLAVHEDKNRVPYVKGCTERFVSSPE 177
Query: 218 EAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQKRL 257
E M+ + +G +R A T MN SSRSH+IF ++I+Q+ +
Sbjct: 178 EVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENV 217
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKT+TM +++GIIPR +F+ I ++ E E ++ +
Sbjct: 86 QTSSGKTHTMEGKLH---DPQLMGIIPRIAHDIFDHIYSMDENL--------EFHIKVSY 134
Query: 63 LELYNEEVSGL 73
E+Y +++ L
Sbjct: 135 FEIYLDKIRDL 145
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 178 FDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQM 237
D RD L K+N+ +HED YV G T + + S E M+ + +G +R A T M
Sbjct: 139 LDKIRDL-LDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNM 197
Query: 238 NSQSSRSHAIFTLHIQQ 254
N SSRSH+IF ++++Q
Sbjct: 198 NEHSSRSHSIFLINVKQ 214
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGK +TM E +GIIPR + +F I ++ E E ++ +
Sbjct: 86 QTSSGKNHTMEGKLH---DPEGMGIIPRIVQDIFNYIYSMDENL--------EFHIKVSY 134
Query: 63 LELYNEEVSGL 73
E+Y +++ L
Sbjct: 135 FEIYLDKIRDL 145
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 178 FDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQM 237
D RD L K+N+ +HED YV G T + + S E M+ + +G +R A T M
Sbjct: 139 LDKIRDL-LDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNM 197
Query: 238 NSQSSRSHAIFTLHIQQ 254
N SSRSH+IF ++++Q
Sbjct: 198 NEHSSRSHSIFLINVKQ 214
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKT+TM E +GIIPR + +F I ++ E E ++ +
Sbjct: 86 QTSSGKTHTMEGKLH---DPEGMGIIPRIVQDIFNYIYSMDENL--------EFHIKVSY 134
Query: 63 LELYNEEVSGL 73
E+Y +++ L
Sbjct: 135 FEIYLDKIRDL 145
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 178 FDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQM 237
D RD L K+N+ +HED YV G T + + S E M+ + +G +R A T M
Sbjct: 139 LDKIRDL-LDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNM 197
Query: 238 NSQSSRSHAIFTLHIQQ 254
N SSRSH+IF ++++Q
Sbjct: 198 NEHSSRSHSIFLINVKQ 214
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKT+TM E +GIIPR + +F I ++ E E ++ +
Sbjct: 86 QTSSGKTHTMEGKLH---DPEGMGIIPRIVQDIFNYIYSMDENL--------EFHIKVSY 134
Query: 63 LELYNEEVSGL 73
E+Y +++ L
Sbjct: 135 FEIYLDKIRDL 145
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 169 TFRFQIIDLF-DDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGA 227
T R ++++ + RD L+ N+ +HE+ +YV G + S QE +R+G
Sbjct: 133 TVRVSYMEIYMERIRDL-LAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGG 191
Query: 228 LSRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLL 272
+R A+T MN +SSRSH+IF + I QK VE + G+ L
Sbjct: 192 NARAVAATNMNQESSRSHSIFVITITQK---NVETGSAKSGQLFL 233
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 3 QTGSGKTYT-MGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTG+GK+YT MGT + + G+IPR + +F I + A E V+
Sbjct: 89 QTGAGKSYTMMGTSID---DPDGRGVIPRIVEQIFTSILSSAANI--------EYTVRVS 137
Query: 62 FLELYNEEVSGL 73
++E+Y E + L
Sbjct: 138 YMEIYMERIRDL 149
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 178 FDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQM 237
D RD L K N+ +HED YV GAT + + S ++ + +G +R A T M
Sbjct: 146 MDKIRDL-LDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNM 204
Query: 238 NSQSSRSHAIFTLHIQQKRL 257
N SSRSH++F ++++Q+ L
Sbjct: 205 NEHSSRSHSVFLINVKQENL 224
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGI 39
QT SGKT+TM V + GIIPR + +F I
Sbjct: 93 QTSSGKTHTMEGVIGDSVKQ---GIIPRIVNDIFNHI 126
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
+K+ E YV T +R +E + +R G SRT AST+MN SSRSHA+FT+ +
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 253 QQ 254
+Q
Sbjct: 277 KQ 278
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 17/74 (22%)
Query: 3 QTGSGKTYT-MGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVV--VQ 59
QTGSGK+YT MGT + G+IPR LF+ I + ++ P + V+
Sbjct: 145 QTGSGKSYTMMGT-------PDQPGLIPRTCEDLFQRIASAQDET-------PNISYNVK 190
Query: 60 AQFLELYNEEVSGL 73
+ E+YNE V L
Sbjct: 191 VSYFEVYNEHVRDL 204
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 10/69 (14%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQ--NGDTPPEVVVQA 60
QTG+GK+Y+MG ++ E LGI+PRA+ +FE + ARQ N D + V A
Sbjct: 103 QTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERV-----TARQENNKDA---IQVYA 154
Query: 61 QFLELYNEE 69
F+E+YNE+
Sbjct: 155 SFIEIYNEK 163
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 208 ATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQK 255
T + S + + L G +R T MNS SSRSHAI T+H++ K
Sbjct: 184 CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK 231
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 10/69 (14%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQ--NGDTPPEVVVQA 60
QTG+GK+Y+MG ++ E LGI+PRA+ +FE + ARQ N D + V A
Sbjct: 103 QTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERV-----TARQENNKDA---IQVYA 154
Query: 61 QFLELYNEE 69
F+E+YNE+
Sbjct: 155 SFIEIYNEK 163
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 208 ATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQK 255
T + S + + L G +R T MNS SSRSHAI T+H++ K
Sbjct: 184 CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK 231
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 174 IIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTA 233
I+DL + D K IK H+D VT ++ I+S ++A+ L Q R+TA
Sbjct: 523 IVDLLNPKID---PNTKYEIK-HDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTA 578
Query: 234 STQMNSQSSRSHAIFTLHIQ 253
+T+ N SSRSH+IF + +Q
Sbjct: 579 ATKSNDHSSRSHSIFIIDLQ 598
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM S G+IP ++ +F I+ + E+ V+ +F
Sbjct: 471 QTGSGKTFTM--------SHPTNGMIPLSLKKIFNDIEELKEKGWS-------YTVRGKF 515
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 516 IEIYNEAIVDL 526
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 174 IIDLFDDTRDYG-----LSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGAL 228
I+DL D + + L K +I+ H+ Y+T T + S + L++ +
Sbjct: 146 ILDLLRDFKSHDNIDEILDSQKHDIR-HDHEKQGTYITNVTRMKMTSTSQVDTILKKASK 204
Query: 229 SRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEI 267
R+TA+T+ N +SSRSH++F +HI + L E +G++
Sbjct: 205 MRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKL 243
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM + G+IP ++H+F+ N+ E+ ++ ++
Sbjct: 94 QTGSGKTYTMLNAGD--------GMIPMTLSHIFKWTANLKERGWN-------YEMECEY 138
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 139 IEIYNETILDL 149
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 186 LSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSH 245
L K + + + ED IYV G + + +A E + +G +R A+TQMN SSRSH
Sbjct: 154 LIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSH 213
Query: 246 AIFTLHIQQKRLV 258
+IF + I+ ++
Sbjct: 214 SIFMVRIECSEVI 226
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 14/71 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKT+TMG ++E G IP + HLF+ I + + QN +V +
Sbjct: 98 QTGAGKTWTMGG------NKEEPGAIPNSFKHLFDAIN--SSSSNQN------FLVIGSY 143
Query: 63 LELYNEEVSGL 73
LELYNEE+ L
Sbjct: 144 LELYNEEIRDL 154
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 185 GLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRS 244
G KMK I I ED ++YV T + + +++ A+ + +G SR T+MN +SSRS
Sbjct: 144 GTQKMKPLI-IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRS 202
Query: 245 HAIFTLHIQQKRLVKVEDPEGEI 267
H IF + ++ + + + EG +
Sbjct: 203 HTIFRMILESREKGEPSNCEGSV 225
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKTYTM SE+ LG+IPRAI +F+ I+ ++ E +++ +
Sbjct: 86 QTASGKTYTMMG------SEDHLGVIPRAIHDIFQKIKKFPDR---------EFLLRVSY 130
Query: 63 LELYNEEVSGL 73
+E+YNE ++ L
Sbjct: 131 MEIYNETITDL 141
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 182 RDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQS 241
RD K K N+++ E YV + ++ S + + + G +RT A+T MN S
Sbjct: 171 RDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETS 230
Query: 242 SRSHAIFTLHIQQKR 256
SRSHA+F + QKR
Sbjct: 231 SRSHAVFNIIFTQKR 245
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GK+YTM E D GIIP+ LF I + V+ +
Sbjct: 114 QTGAGKSYTMMGKQEKD----QQGIIPQLCEDLFSRINDTTNDNMS-------YSVEVSY 162
Query: 63 LELYNEEVSGL 73
+E+Y E V L
Sbjct: 163 MEIYCERVRDL 173
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 14/72 (19%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTG+GKTYTM GT E E+ G+IP A H+F I Q + +V+A
Sbjct: 110 QTGTGKTYTMQGTWVEP----ELRGVIPNAFEHIFTHISRSQNQ---------QYLVRAS 156
Query: 62 FLELYNEEVSGL 73
+LE+Y EE+ L
Sbjct: 157 YLEIYQEEIRDL 168
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 163 SLNKNNTFRFQIIDLF-DDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMN 221
S N+ R ++++ ++ RD + +++ E+ +Y+ +S ++ +E +
Sbjct: 146 SQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVTKNVKEIEH 205
Query: 222 ALRQGALSRTTASTQMNSQSSRSHAIFTLHIQ 253
+ G +R ST MN SSRSHAIF + ++
Sbjct: 206 VMNLGNQTRAVGSTHMNEVSSRSHAIFIITVE 237
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 182 RDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQS 241
RD K K N+++ E YV + ++ S + + + G +RT A+T MN S
Sbjct: 155 RDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETS 214
Query: 242 SRSHAIFTLHIQQKR 256
SRSHA+F + QKR
Sbjct: 215 SRSHAVFNIIFTQKR 229
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GK+YTM E D GIIP+ LF I + V+ +
Sbjct: 98 QTGAGKSYTMMGKQEKD----QQGIIPQLCEDLFSRINDTTNDNMS-------YSVEVSY 146
Query: 63 LELYNEEVSGL 73
+E+Y E V L
Sbjct: 147 MEIYCERVRDL 157
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
+ + ED+ + V G T +S++E ++ L G +RT T MN+ SSRSHA+F +++
Sbjct: 177 LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL 236
Query: 253 QQK 255
+Q+
Sbjct: 237 RQQ 239
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 182 RDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQS 241
RD K K N+++ E YV + ++ S + + + G +RT A+T MN S
Sbjct: 155 RDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETS 214
Query: 242 SRSHAIFTLHIQQKR 256
SRSHA+F + QKR
Sbjct: 215 SRSHAVFNIIFTQKR 229
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GK+YTM E D GIIP+ LF I + V+ +
Sbjct: 98 QTGAGKSYTMMGKQEKD----QQGIIPQLCEDLFSRINDTTNDNMS-------YSVEVSY 146
Query: 63 LELYNEEVSGL 73
+E+Y E V L
Sbjct: 147 MEIYCERVRDL 157
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM D E +G+IPR + LF+ I R + E ++A F
Sbjct: 147 QTGSGKTYTM------DGVPESVGVIPRTVDLLFDSI-------RGYRNLGWEYEIKATF 193
Query: 63 LELYNE 68
LE+YNE
Sbjct: 194 LEIYNE 199
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
I++ +++ + IYV+ T +++ + + ++R TAST N +SSRSHA+ L +
Sbjct: 214 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 273
Query: 253 QQKRLVKVEDPEGEIG 268
+ K E G I
Sbjct: 274 IGRHAEKQEISVGSIN 289
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM D E +G+IPR + LF+ I R + E ++A F
Sbjct: 155 QTGSGKTYTM------DGVPESVGVIPRTVDLLFDSI-------RGYRNLGWEYEIKATF 201
Query: 63 LELYNE 68
LE+YNE
Sbjct: 202 LEIYNE 207
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
I++ +++ + IYV+ T +++ + + ++R TAST N +SSRSHA+ L +
Sbjct: 222 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 281
Query: 253 QQKRLVKVEDPEGEIG 268
+ K E G I
Sbjct: 282 IGRHAEKQEISVGSIN 297
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM D E +G+IPR + LF+ I R + E ++A F
Sbjct: 141 QTGSGKTYTM------DGVPESVGVIPRTVDLLFDSI-------RGYRNLGWEYEIKATF 187
Query: 63 LELYNE 68
LE+YNE
Sbjct: 188 LEIYNE 193
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
I++ +++ + IYV+ T +++ + + ++R TAST N +SSRSHA+ L +
Sbjct: 208 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 267
Query: 253 QQKRLVKVEDPEGEIG 268
+ K E G I
Sbjct: 268 IGRHAEKQEISVGSIN 283
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM D E +G+IPR + LF+ I R + E ++A F
Sbjct: 144 QTGSGKTYTM------DGVPESVGVIPRTVDLLFDSI-------RGYRNLGWEYEIKATF 190
Query: 63 LELYNE 68
LE+YNE
Sbjct: 191 LEIYNE 196
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
I++ +++ + IYV+ T +++ + + ++R TAST N +SSRSHA+ L +
Sbjct: 211 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 270
Query: 253 QQKRLVKVEDPEGEIG 268
+ K E G I
Sbjct: 271 IGRHAEKQEISVGSIN 286
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 182 RDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQS 241
RD K K N+++ E YV + ++ S + + + G RT A+T MN S
Sbjct: 155 RDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETS 214
Query: 242 SRSHAIFTLHIQQKR 256
SRSHA+F + QKR
Sbjct: 215 SRSHAVFNIIFTQKR 229
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GK+YTM E D GIIP+ LF I + V+ +
Sbjct: 98 QTGAGKSYTMMGKQEKD----QQGIIPQLCEDLFSRINDTTNDNMS-------YSVEVSY 146
Query: 63 LELYNEEVSGL 73
+E+Y E V L
Sbjct: 147 MEIYCERVRDL 157
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 192 NIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLH 251
+I++ ED ++ + G + E ++ L G +R T +T +N SSRSH +FT+
Sbjct: 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVT 221
Query: 252 IQQKRLVKVEDPEGEIGEFLLFLTFPTGSASEFYF 286
++Q+ P G+ L+ S+F+F
Sbjct: 222 LKQRGRAPSRLPRPAPGQLLV---------SKFHF 247
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTMG + E+ GI+PRA+ F+ I + + +V +
Sbjct: 92 QTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE---------NDLLDCLVHVSY 142
Query: 63 LELYNEE 69
LE+Y EE
Sbjct: 143 LEVYKEE 149
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 192 NIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLH 251
+I++ ED ++ + G + E ++ L G +R T +T +N SSRSH +FT+
Sbjct: 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVT 221
Query: 252 IQQKRLVKVEDPEGEIGEFLLFLTFPTGSASEFYF 286
++Q+ P G+ L+ S+F+F
Sbjct: 222 LEQRGRAPSRLPRPAPGQLLV---------SKFHF 247
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTMG + E+ GI+PRA+ F+ I + + +V +
Sbjct: 92 QTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE---------NDLLDCLVHVSY 142
Query: 63 LELYNEE 69
LE+Y EE
Sbjct: 143 LEVYKEE 149
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM G D ++ G+IPRA+ HLF ++A++ G T A +
Sbjct: 124 QTGSGKTFTMEGGPGGD--PQLEGLIPRALRHLF----SVAQELSGQGWT---YSFVASY 174
Query: 63 LELYNEEVSGL 73
+E+YNE V L
Sbjct: 175 VEIYNETVRDL 185
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 229 SRTTASTQMNSQSSRSHAIFTLHI 252
+R A T N +SSRSH++F L I
Sbjct: 236 NRAVARTAQNERSSRSHSVFQLQI 259
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 21/79 (26%)
Query: 3 QTGSGKTYTMGTGFET--------DVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPP 54
QTG+GKT+TM G ET D S+ +GIIPRA++HLF+ ++ +
Sbjct: 109 QTGTGKTHTM-VGNETAELKSSWEDDSD--IGIIPRALSHLFDELRMME----------V 155
Query: 55 EVVVQAQFLELYNEEVSGL 73
E ++ +LELYNEE+ L
Sbjct: 156 EYTMRISYLELYNEELCDL 174
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 169 TFRFQIIDLFDD-TRDYGLSKMKSNIKIHEDSGH--SIYVTGATSKSIRSAQEAMNALRQ 225
T R ++L+++ D + + I+I +DS S+ + G + S + L +
Sbjct: 158 TMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEK 217
Query: 226 GALSRTTASTQMNSQSSRSHAIFTL--HIQQ 254
G R TA+T MN+QSSRSH +F++ HI++
Sbjct: 218 GKERRKTATTLMNAQSSRSHTVFSIVVHIRE 248
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 184 YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSR 243
+ L K+ +++ ED + V G + ++ ++ + + G RT+ T N+ SSR
Sbjct: 242 FDLLNRKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSR 301
Query: 244 SHAIFTLHIQQK 255
SHA+F + +++K
Sbjct: 302 SHAVFQIILRRK 313
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TMG F + GI A +F ++ + E+ V A F
Sbjct: 181 QTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKL-------ELQVYATF 233
Query: 63 LELYNEEVSGL 73
E+Y+ +V L
Sbjct: 234 FEIYSGKVFDL 244
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
+K+ E S YV G + ++ S ++ + + +G SRT A+T MN +SSRSHA+F + +
Sbjct: 168 LKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITL 227
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
Query: 3 QTGSGKTYT-MGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTGSGK+YT MGT + G+IPR + LFE Q E Q+ V+
Sbjct: 101 QTGSGKSYTMMGTA-------DQPGLIPRLCSGLFERTQK-EENEEQS------FKVEVS 146
Query: 62 FLELYNEEVSGL 73
++E+YNE+V L
Sbjct: 147 YMEIYNEKVRDL 158
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
Q+GSGKTYTM D E +G+IPR + LF+ I R + E ++A F
Sbjct: 144 QSGSGKTYTM------DGVPESVGVIPRTVDLLFDSI-------RGYRNLGWEYEIKATF 190
Query: 63 LELYNE 68
LE+YNE
Sbjct: 191 LEIYNE 196
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
I++ +++ + IYV+ T +++ + + ++R TAST N +SSRSHA+ L +
Sbjct: 211 IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL 270
Query: 253 QQKRLVKVEDPEGEIG 268
+ K E G I
Sbjct: 271 IGRHAEKQEISVGSIN 286
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+++DL D ++ I ED +I + G + K I S + + +RT
Sbjct: 162 KVLDLLDPA--------SGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTV 213
Query: 233 ASTQMNSQSSRSHAIFTLHIQQK-RLVKVEDPEGEI 267
+T++N +SSRSHA+ + + Q+ RL EG++
Sbjct: 214 GATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKL 249
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 184 YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSR 243
+ L K+ +++ EDS + V G + A + + + G+ RT+ T NS SSR
Sbjct: 224 FDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSR 283
Query: 244 SHAIFTLHIQQK 255
SHA F + ++ K
Sbjct: 284 SHACFQILLRTK 295
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 184 YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSR 243
+ L K+ +++ EDS + V G + A + + + G+ RT+ T NS SSR
Sbjct: 152 FDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSR 211
Query: 244 SHAIFTLHIQQK 255
SHA F + ++ K
Sbjct: 212 SHACFQILLRTK 223
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM + GIIP I+H+F I + + + V A+F
Sbjct: 149 QTGSGKTFTMLNPGD--------GIIPSTISHIFNWINKLKTKGW-------DYKVNAEF 193
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 194 IEIYNENIVDL 204
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 223 LRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
L++ R+TAST N SSRSH+IF +H+
Sbjct: 252 LKKANKLRSTASTASNEHSSRSHSIFIIHL 281
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 184 YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSR 243
+ L K+ +++ ED + V G + SA + + + G+ RT+ T NS SSR
Sbjct: 204 FDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSR 263
Query: 244 SHAIFTLHIQQK 255
SHA F + ++ K
Sbjct: 264 SHACFQIILRAK 275
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 173 LQMFDDPRN----------------KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 216
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 217 TLMNAYSSRSHSVFSVTIHMK 237
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + D E
Sbjct: 97 QTGTGKTFTMEG--ERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT----------DNGTE 144
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 145 FSVKVSLLEIYNEEL 159
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 182 LQMFDDPRN----------------KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 225
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 226 TLMNAYSSRSHSVFSVTIHMK 246
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + D E
Sbjct: 106 QTGTGKTFTMEG--ERSPNEEYTWEEVPLAGIIPRTLHQIFEKLT----------DNGTE 153
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 154 FSVKVSLLEIYNEEL 168
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 184 LQMFDDPRNK----------------RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 227
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 228 TLMNAYSSRSHSVFSVTIHMK 248
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + + NG E
Sbjct: 108 QTGTGKTFTMEG--ERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-------NGT---E 155
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 156 FSVKVSLLEIYNEEL 170
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 182 LQMFDDPRN----------------KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 225
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 226 TLMNAYSSRSHSVFSVTIHMK 246
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + D E
Sbjct: 106 QTGTGKTFTMEG--ERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT----------DNGTE 153
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 154 FSVKVSLLEIYNEEL 168
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM + GI+P I H+F I +A + V +F
Sbjct: 115 QTGSGKTYTMLNPGD--------GIVPATINHIFSWIDKLAARGWS-------YKVSCEF 159
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 160 IEIYNENIVDL 170
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 196 HEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQK 255
H+ + Y+T T+ + S L++ R+TAST N SSRSH+IF +H++ K
Sbjct: 193 HDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGK 252
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 182 LQMFDDPRNK----------------RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 225
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 226 TLMNAYSSRSHSVFSVTIHMK 246
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 3 QTGSGKTYTM----GTGFETDVSEEML-GIIPRAITHLFEGIQNIAEQARQNGDTPPEVV 57
QTG+GKT+TM E E+ L GIIPR + +FE + D E
Sbjct: 106 QTGTGKTFTMEGERSPNEEYTWEEDPLDGIIPRTLHQIFEKLT----------DNGTEFS 155
Query: 58 VQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 156 VKVSLLEIYNEEL 168
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 182 LQMFDDPRN----------------KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 225
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 226 TLMNAYSSRSHSVFSVTIHMK 246
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + D E
Sbjct: 106 QTGTGKTFTMEG--ERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT----------DNGTE 153
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 154 FSVKVSLLEIYNEEL 168
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 167 LQMFDDPRN----------------KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 210
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 211 TLMNAYSSRSHSVFSVTIHMK 231
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + D E
Sbjct: 91 QTGTGKTFTMEG--ERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT----------DNGTE 138
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 139 FSVKVSLLEIYNEEL 153
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 181 LQMFDDPRN----------------KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 224
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 225 TLMNAYSSRSHSVFSVTIHMK 245
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + D E
Sbjct: 105 QTGTGKTFTMEG--ERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT----------DNGTE 152
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 153 FSVKVSLLEIYNEEL 167
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
+ +FDD R+ + + G ++ + E L +GA RTTA+
Sbjct: 182 LQMFDDPRNK----------------RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 225
Query: 235 TQMNSQSSRSHAIFTLHIQQK 255
T MN+ SSRSH++F++ I K
Sbjct: 226 TLMNAYSSRSHSVFSVTIHMK 246
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 3 QTGSGKTYTMGTGFETDVSEE-------MLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM E +EE + GIIPR + +FE + D E
Sbjct: 106 QTGTGKTFTMEG--ERSPNEEYCWEEDPLAGIIPRTLHQIFEKLT----------DNGTE 153
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 154 FSVKVSLLEIYNEEL 168
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKTYTM G D E G+IP + H+F I Q + +V+A +
Sbjct: 110 QTGTGKTYTM-EGIRGD--PEKRGVIPNSFDHIFTHISRSQNQ---------QYLVRASY 157
Query: 63 LELYNEEVSGL 73
LE+Y EE+ L
Sbjct: 158 LEIYQEEIRDL 168
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
+K D+G +YV +S +S +E + + G +R+ +T MN SSRSHAIF + I
Sbjct: 179 LKERPDTG--VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 253 Q 253
+
Sbjct: 237 E 237
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM + GIIP I+H+F I + + + V +F
Sbjct: 92 QTGSGKTFTMLNPGD--------GIIPSTISHIFNWINKLKTKGW-------DYKVNCEF 136
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 137 IEIYNENIVDL 147
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 223 LRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
L++ R+TAST N SSRSH+IF +H+
Sbjct: 195 LKKANKLRSTASTASNEHSSRSHSIFIIHL 224
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM + GIIP I+H+F I + + + V +F
Sbjct: 93 QTGSGKTFTMLNPGD--------GIIPSTISHIFNWINKLKTKGW-------DYKVNCEF 137
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 138 IEIYNENIVDL 148
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 223 LRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
L++ R+TAST N SSRSH+IF +H+
Sbjct: 196 LKKANKLRSTASTASNEHSSRSHSIFIIHL 225
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM + GIIP I+H+F I + + + V +F
Sbjct: 93 QTGSGKTFTMLNPGD--------GIIPSTISHIFNWINKLKTKGW-------DYKVNCEF 137
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 138 IEIYNENIVDL 148
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 223 LRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
L++ R+TAST N SS SH+IF +H+
Sbjct: 196 LKKANKLRSTASTASNEHSSASHSIFIIHL 225
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM + GIIP I+H+F I + + + V +F
Sbjct: 104 QTGSGKTFTMLNPGD--------GIIPSTISHIFNWINKLKTKGW-------DYKVNCEF 148
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 149 IEIYNENIVDL 159
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 223 LRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
L++ R+TAST N SSRSH+IF +H+
Sbjct: 207 LKKANKLRSTASTASNEHSSRSHSIFIIHL 236
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM + GIIP I+H+F I + + + V +F
Sbjct: 93 QTGSGKTFTMLNPGD--------GIIPSTISHIFNWINKLKTKGW-------DYKVNCEF 137
Query: 63 LELYNEEVSGL 73
+E+YNE + L
Sbjct: 138 IEIYNENIVDL 148
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 223 LRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
L++ R+TAST N SSRSH+IF +H+
Sbjct: 196 LKKANKLRSTASTASNEHSSRSHSIFIIHL 225
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 167 NNTFRFQI----IDLFDDTR-DYGLSKMKSNIK--IHEDSGHSIYVTGATSKSIRSAQEA 219
+N F F + ++L+ DT D L K +K I +DS + V T SI + +E
Sbjct: 122 SNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEEL 181
Query: 220 MNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQKRL 257
+++G+ R T T MN QSSRSH I ++ I+ L
Sbjct: 182 KTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL 219
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 159 KVLASLNKNNTFRFQ------IIDLFDDTR-DYGLSKMKSNIK--IHEDSGHSIYVTGAT 209
K L ++ K ++ RF +++L+ DT D L K +K I +DS ++V T
Sbjct: 120 KELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVT 179
Query: 210 SKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQ 253
+ I + +E L +G+ R + T MN +SSRSH I ++ I+
Sbjct: 180 TIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIE 223
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKTYTM E + + GI+PRA+ +F I+ A + V+ +
Sbjct: 113 QTGAGKTYTMMGATE---NYKHRGILPRALQQVFRMIEERPTHA---------ITVRVSY 160
Query: 63 LELYNEEV 70
LE+YNE +
Sbjct: 161 LEIYNESL 168
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 203 IYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQ 253
+++ G + ++A + L +G +R AS MN SSRSH IFT++++
Sbjct: 194 VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLE 244
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 190 KSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFT 249
K I++ D +YV G T ++S + G +RTT T +N SSRSHA+
Sbjct: 153 KLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLI 212
Query: 250 LHIQ 253
+ ++
Sbjct: 213 VTVR 216
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTG+GKTYTM GT E GI RA+ LF +Q A E +
Sbjct: 89 QTGAGKTYTMEGTA-------ENPGINQRALQLLFSEVQEKASDW--------EYTITVS 133
Query: 62 FLELYNE 68
E+YNE
Sbjct: 134 AAEIYNE 140
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 134 GIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK-NNTFRF 172
GIK ++E K Q+ + KIRS E ++ A N N+ RF
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRF 57
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 122 IEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE---RDKVLASLNKNNTFRFQIIDLF 178
I+E EK +++M I + YE + ++++ ++ EE R K +++L K + ++
Sbjct: 158 IDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYL 217
Query: 179 DDTR 182
D R
Sbjct: 218 DKVR 221
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 184 YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSR 243
Y L + + + E+ + V + + +E + + G L R N +SSR
Sbjct: 152 YDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSR 211
Query: 244 SHAIFTLHIQ 253
SHAI + ++
Sbjct: 212 SHAILNIDLK 221
>pdb|1XKN|A Chain A, Crystal Structure Of The Putative Peptidyl-Arginine
Deiminase From Chlorobium Tepidum, Nesg Target Ctr21
Length = 355
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 253 QQKRLVKVEDPEGEIGEFLLFLTFPTGSA 281
Q + L+K DPEG+ E ++F PT A
Sbjct: 65 QARELLKERDPEGKYAERIVFHRIPTNDA 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,248,580
Number of Sequences: 62578
Number of extensions: 260054
Number of successful extensions: 964
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 133
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)