Query psy15014
Match_columns 286
No_of_seqs 197 out of 1153
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:13:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 1.1E-41 2.4E-46 338.3 11.8 156 1-282 92-247 (574)
2 cd01373 KISc_KLP2_like Kinesin 100.0 5.4E-40 1.2E-44 311.7 20.0 164 1-283 81-246 (337)
3 cd01370 KISc_KIP3_like Kinesin 100.0 8.3E-40 1.8E-44 310.5 18.9 154 1-282 94-247 (338)
4 cd01368 KISc_KIF23_like Kinesi 100.0 2.3E-39 5.1E-44 308.3 18.9 157 1-283 95-254 (345)
5 KOG0245|consensus 100.0 2.1E-40 4.6E-45 338.9 9.8 161 1-283 94-254 (1221)
6 KOG0243|consensus 100.0 4.2E-40 9.2E-45 340.5 10.3 166 1-282 135-302 (1041)
7 cd01367 KISc_KIF2_like Kinesin 100.0 7.6E-39 1.6E-43 302.0 16.7 146 1-283 91-236 (322)
8 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.8E-38 8.2E-43 300.9 19.1 160 1-283 95-254 (356)
9 cd01375 KISc_KIF9_like Kinesin 100.0 7E-38 1.5E-42 296.8 19.8 162 1-283 87-248 (334)
10 PLN03188 kinesin-12 family pro 100.0 4.1E-38 8.9E-43 329.1 19.4 167 1-283 172-342 (1320)
11 cd01372 KISc_KIF4 Kinesin moto 100.0 1.4E-37 3.1E-42 294.7 19.4 165 1-282 80-249 (341)
12 cd01374 KISc_CENP_E Kinesin mo 100.0 2.5E-37 5.4E-42 291.2 19.1 154 1-283 80-233 (321)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 3.5E-37 7.6E-42 291.8 19.2 157 1-282 88-244 (333)
14 cd01376 KISc_KID_like Kinesin 100.0 2.8E-37 6.1E-42 290.9 18.1 147 1-282 87-233 (319)
15 KOG0242|consensus 100.0 2.7E-38 5.8E-43 322.5 12.0 150 1-283 93-242 (675)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.4E-37 7.4E-42 290.5 18.6 154 1-282 83-236 (325)
17 KOG0240|consensus 100.0 5.8E-38 1.2E-42 307.0 11.7 154 1-282 89-242 (607)
18 cd01364 KISc_BimC_Eg5 Kinesin 100.0 8.9E-37 1.9E-41 290.8 19.5 161 1-282 88-255 (352)
19 KOG0247|consensus 100.0 7.4E-38 1.6E-42 312.9 10.0 87 193-282 257-343 (809)
20 cd01366 KISc_C_terminal Kinesi 100.0 3.2E-36 6.9E-41 284.2 19.2 156 1-283 84-239 (329)
21 PF00225 Kinesin: Kinesin moto 100.0 4.8E-36 1E-40 282.9 13.0 163 1-282 81-244 (335)
22 smart00129 KISc Kinesin motor, 100.0 9.8E-35 2.1E-39 274.4 19.1 154 1-283 86-239 (335)
23 cd00106 KISc Kinesin motor dom 100.0 1.1E-34 2.4E-39 272.8 19.4 157 1-283 85-241 (328)
24 KOG0239|consensus 100.0 2.7E-35 5.8E-40 299.9 11.7 154 1-282 399-552 (670)
25 KOG0246|consensus 100.0 1.5E-34 3.2E-39 283.0 14.7 155 1-283 298-452 (676)
26 KOG0241|consensus 100.0 1.4E-33 3E-38 286.1 10.5 159 1-283 100-258 (1714)
27 COG5059 KIP1 Kinesin-like prot 100.0 7.7E-30 1.7E-34 257.1 11.9 152 1-283 96-247 (568)
28 KOG0244|consensus 100.0 8.4E-31 1.8E-35 268.2 -3.5 157 1-283 72-228 (913)
29 cd01363 Motor_domain Myosin an 99.9 1.4E-21 3E-26 171.0 8.6 62 219-282 58-119 (186)
30 COG0556 UvrB Helicase subunit 94.2 0.05 1.1E-06 55.3 4.0 58 2-70 39-100 (663)
31 PF01935 DUF87: Domain of unkn 88.5 0.13 2.9E-06 45.6 -0.1 13 1-13 29-41 (229)
32 cd00046 DEXDc DEAD-like helica 87.9 0.16 3.4E-06 39.4 0.0 14 1-14 6-19 (144)
33 COG5059 KIP1 Kinesin-like prot 86.4 0.004 8.7E-08 63.8 -12.5 51 225-283 486-536 (568)
34 PF04851 ResIII: Type III rest 85.7 0.21 4.5E-06 41.6 -0.4 13 2-14 32-44 (184)
35 COG2804 PulE Type II secretory 85.0 0.29 6.2E-06 49.5 0.1 13 2-14 265-277 (500)
36 smart00382 AAA ATPases associa 83.3 0.34 7.4E-06 37.4 -0.2 13 1-13 8-20 (148)
37 COG2805 PilT Tfp pilus assembl 80.8 0.54 1.2E-05 45.0 0.2 12 2-13 132-143 (353)
38 PRK06620 hypothetical protein; 80.6 0.49 1.1E-05 42.4 -0.1 14 1-14 50-63 (214)
39 PRK08727 hypothetical protein; 79.1 0.62 1.3E-05 42.1 0.0 14 1-14 47-60 (233)
40 cd01131 PilT Pilus retraction 79.0 0.64 1.4E-05 40.8 0.1 12 2-13 8-19 (198)
41 PF12846 AAA_10: AAA-like doma 78.4 0.68 1.5E-05 41.7 0.0 12 2-13 8-19 (304)
42 PF13245 AAA_19: Part of AAA d 78.0 0.73 1.6E-05 34.6 0.1 12 2-13 17-28 (76)
43 PRK06893 DNA replication initi 77.9 0.72 1.6E-05 41.5 0.0 14 1-14 45-58 (229)
44 cd00009 AAA The AAA+ (ATPases 77.3 0.72 1.6E-05 36.0 -0.1 13 1-13 25-37 (151)
45 PF00448 SRP54: SRP54-type pro 76.5 0.73 1.6E-05 40.8 -0.3 12 2-13 8-19 (196)
46 PRK08084 DNA replication initi 75.5 0.86 1.9E-05 41.2 -0.1 14 1-14 51-64 (235)
47 PRK05642 DNA replication initi 74.8 0.96 2.1E-05 40.9 0.0 14 1-14 51-64 (234)
48 PF13401 AAA_22: AAA domain; P 74.7 0.7 1.5E-05 36.7 -0.8 13 1-13 10-22 (131)
49 TIGR01420 pilT_fam pilus retra 74.7 0.99 2.1E-05 43.2 0.1 12 2-13 129-140 (343)
50 PRK09087 hypothetical protein; 74.3 0.96 2.1E-05 40.8 -0.1 13 1-13 50-62 (226)
51 PF00308 Bac_DnaA: Bacterial d 74.3 0.79 1.7E-05 41.1 -0.7 14 1-14 40-53 (219)
52 COG1474 CDC6 Cdc6-related prot 73.9 1 2.3E-05 43.8 0.0 12 1-12 48-59 (366)
53 PRK10436 hypothetical protein; 73.9 1.1 2.4E-05 45.0 0.2 12 2-13 225-236 (462)
54 TIGR02524 dot_icm_DotB Dot/Icm 73.6 1.1 2.4E-05 43.4 0.1 12 2-13 141-152 (358)
55 PF00004 AAA: ATPase family as 73.1 1 2.2E-05 35.5 -0.3 42 1-42 4-56 (132)
56 TIGR02525 plasmid_TraJ plasmid 72.9 1.2 2.6E-05 43.5 0.1 12 2-13 156-167 (372)
57 PF13479 AAA_24: AAA domain 72.7 1.2 2.5E-05 39.7 -0.0 13 1-13 9-21 (213)
58 PF00437 T2SE: Type II/IV secr 72.3 1.1 2.3E-05 40.9 -0.3 12 2-13 134-145 (270)
59 PF13086 AAA_11: AAA domain; P 72.1 1.2 2.6E-05 38.3 -0.1 12 2-13 24-35 (236)
60 TIGR02538 type_IV_pilB type IV 71.4 1.4 2.9E-05 45.3 0.1 12 2-13 323-334 (564)
61 TIGR03420 DnaA_homol_Hda DnaA 70.6 1.3 2.9E-05 38.7 -0.1 13 1-13 44-56 (226)
62 PRK06526 transposase; Provisio 70.1 1.3 2.9E-05 40.8 -0.2 14 1-14 104-117 (254)
63 PF01695 IstB_IS21: IstB-like 69.8 1.2 2.6E-05 38.7 -0.5 14 1-14 53-66 (178)
64 TIGR02533 type_II_gspE general 69.7 1.5 3.3E-05 44.2 0.1 12 2-13 249-260 (486)
65 PRK06835 DNA replication prote 69.4 1.4 3.1E-05 42.2 -0.1 14 1-14 189-202 (329)
66 cd01129 PulE-GspE PulE/GspE Th 69.2 1.6 3.5E-05 40.4 0.1 12 2-13 87-98 (264)
67 cd01130 VirB11-like_ATPase Typ 69.2 1.6 3.4E-05 37.8 0.1 11 2-12 32-42 (186)
68 TIGR00362 DnaA chromosomal rep 69.1 1.5 3.2E-05 42.7 -0.2 13 1-13 142-154 (405)
69 TIGR03499 FlhF flagellar biosy 68.8 1.7 3.6E-05 40.6 0.1 14 1-14 200-213 (282)
70 PRK06921 hypothetical protein; 68.0 1.5 3.4E-05 40.5 -0.2 14 1-14 123-136 (266)
71 KOG2543|consensus 67.5 1.8 3.8E-05 42.8 -0.0 13 1-13 36-48 (438)
72 PRK12377 putative replication 67.1 1.7 3.7E-05 40.0 -0.1 14 1-14 107-120 (248)
73 PRK00149 dnaA chromosomal repl 67.1 1.7 3.7E-05 43.0 -0.1 13 1-13 154-166 (450)
74 PF01580 FtsK_SpoIIIE: FtsK/Sp 67.0 1.5 3.2E-05 38.2 -0.6 14 1-14 44-57 (205)
75 smart00487 DEXDc DEAD-like hel 66.9 2 4.4E-05 35.3 0.3 13 2-14 31-43 (201)
76 PRK13833 conjugal transfer pro 66.0 2 4.4E-05 41.2 0.1 12 2-13 151-162 (323)
77 PF00910 RNA_helicase: RNA hel 65.9 1.8 4E-05 34.1 -0.2 13 1-13 4-16 (107)
78 PRK14088 dnaA chromosomal repl 65.9 1.9 4E-05 42.9 -0.2 13 1-13 136-148 (440)
79 COG0593 DnaA ATPase involved i 65.8 1.9 4.2E-05 42.7 -0.1 13 1-13 119-131 (408)
80 PRK08903 DnaA regulatory inact 65.7 2 4.4E-05 38.0 0.0 13 1-13 48-60 (227)
81 PRK13851 type IV secretion sys 64.9 2.1 4.6E-05 41.3 0.0 11 2-12 169-179 (344)
82 COG1125 OpuBA ABC-type proline 64.9 2.3 4.9E-05 40.1 0.2 11 2-12 34-44 (309)
83 PF05673 DUF815: Protein of un 64.6 3.4 7.3E-05 38.4 1.3 49 203-252 110-159 (249)
84 PRK08116 hypothetical protein; 64.6 2.1 4.5E-05 39.7 -0.1 13 1-13 120-132 (268)
85 KOG0953|consensus 64.5 7.7 0.00017 40.1 3.8 42 2-43 198-239 (700)
86 TIGR02928 orc1/cdc6 family rep 63.1 2.3 5.1E-05 40.2 -0.1 12 1-12 46-57 (365)
87 TIGR02782 TrbB_P P-type conjug 63.0 2.5 5.4E-05 39.9 0.1 12 2-13 139-150 (299)
88 PRK15483 type III restriction- 62.3 3.5 7.6E-05 45.1 1.1 12 3-14 67-78 (986)
89 PRK12723 flagellar biosynthesi 62.2 2.4 5.3E-05 41.6 -0.1 13 1-13 180-192 (388)
90 TIGR03015 pepcterm_ATPase puta 62.1 2.4 5.3E-05 38.1 -0.2 13 1-13 49-61 (269)
91 cd01120 RecA-like_NTPases RecA 61.9 2.6 5.7E-05 33.9 0.0 13 1-13 5-17 (165)
92 PRK08181 transposase; Validate 61.7 2.5 5.3E-05 39.5 -0.2 14 1-14 112-125 (269)
93 PRK00411 cdc6 cell division co 61.7 2.5 5.5E-05 40.4 -0.1 12 1-12 61-72 (394)
94 PRK08939 primosomal protein Dn 61.6 2.5 5.5E-05 40.0 -0.1 14 1-14 162-175 (306)
95 PF07724 AAA_2: AAA domain (Cd 61.3 2.4 5.3E-05 36.6 -0.3 12 1-12 9-20 (171)
96 PF06309 Torsin: Torsin; Inte 61.3 2.9 6.3E-05 34.9 0.2 11 2-12 60-70 (127)
97 PF00270 DEAD: DEAD/DEAH box h 61.1 2.8 6.1E-05 34.5 0.1 13 2-14 21-33 (169)
98 PRK12402 replication factor C 61.0 2.7 5.8E-05 39.1 -0.1 12 1-12 42-53 (337)
99 PF13555 AAA_29: P-loop contai 60.9 2.6 5.7E-05 30.8 -0.1 12 1-12 29-40 (62)
100 PRK14087 dnaA chromosomal repl 60.7 2.7 5.8E-05 42.0 -0.1 14 1-14 147-160 (450)
101 TIGR02881 spore_V_K stage V sp 60.7 2.7 5.9E-05 38.3 -0.1 12 1-12 48-59 (261)
102 TIGR00631 uvrb excinuclease AB 60.6 8.4 0.00018 40.4 3.5 59 1-70 35-97 (655)
103 PRK14722 flhF flagellar biosyn 60.4 2.8 6.1E-05 41.0 -0.1 13 1-13 143-155 (374)
104 PRK13900 type IV secretion sys 60.3 3 6.5E-05 40.0 0.1 12 2-13 167-178 (332)
105 COG1419 FlhF Flagellar GTP-bin 59.7 3.2 6.8E-05 41.1 0.2 11 2-12 210-220 (407)
106 PF13207 AAA_17: AAA domain; P 59.5 2.8 6E-05 32.9 -0.2 12 1-12 5-16 (121)
107 PRK13894 conjugal transfer ATP 59.4 3.1 6.8E-05 39.7 0.1 12 2-13 155-166 (319)
108 PRK09183 transposase/IS protei 59.3 3 6.5E-05 38.4 -0.1 13 1-13 108-120 (259)
109 COG1484 DnaC DNA replication p 59.3 3 6.6E-05 38.4 -0.0 14 1-14 111-124 (254)
110 PF02456 Adeno_IVa2: Adenoviru 59.1 3 6.5E-05 40.2 -0.1 12 1-12 93-104 (369)
111 COG5008 PilU Tfp pilus assembl 59.0 3.8 8.2E-05 39.0 0.5 11 2-12 134-144 (375)
112 PF07728 AAA_5: AAA domain (dy 58.3 2.6 5.6E-05 34.1 -0.6 13 1-13 5-17 (139)
113 PF13191 AAA_16: AAA ATPase do 57.5 3.3 7.1E-05 34.6 -0.2 12 1-12 30-41 (185)
114 PF13604 AAA_30: AAA domain; P 57.3 3.1 6.7E-05 36.5 -0.3 12 2-13 25-36 (196)
115 cd02025 PanK Pantothenate kina 56.9 3.7 7.9E-05 36.9 0.1 12 2-13 6-17 (220)
116 cd02023 UMPK Uridine monophosp 56.3 3.8 8.3E-05 35.4 0.1 12 2-13 6-17 (198)
117 PF13238 AAA_18: AAA domain; P 55.8 3.6 7.8E-05 32.1 -0.2 12 1-12 4-15 (129)
118 KOG0989|consensus 55.5 4.1 8.8E-05 39.2 0.1 12 1-12 63-74 (346)
119 PF00580 UvrD-helicase: UvrD/R 55.2 3.4 7.3E-05 37.4 -0.4 13 2-14 20-32 (315)
120 PF13476 AAA_23: AAA domain; P 54.9 3.1 6.8E-05 35.0 -0.7 12 1-12 25-36 (202)
121 PRK06995 flhF flagellar biosyn 54.8 4.2 9E-05 41.2 0.1 12 2-13 263-274 (484)
122 PRK12422 chromosomal replicati 54.5 3.9 8.5E-05 40.8 -0.1 13 1-13 147-159 (445)
123 cd03274 ABC_SMC4_euk Eukaryoti 54.3 4.4 9.6E-05 36.0 0.2 12 1-12 31-42 (212)
124 PRK07952 DNA replication prote 54.1 4 8.7E-05 37.5 -0.1 14 1-14 105-118 (244)
125 COG1219 ClpX ATP-dependent pro 53.3 4.9 0.00011 39.0 0.3 11 2-12 104-114 (408)
126 PRK13764 ATPase; Provisional 53.1 4.6 9.9E-05 42.0 0.1 12 2-13 264-275 (602)
127 TIGR00348 hsdR type I site-spe 53.0 4.6 9.9E-05 42.3 0.1 11 3-13 271-281 (667)
128 TIGR01242 26Sp45 26S proteasom 52.7 4.5 9.7E-05 38.8 -0.1 12 1-12 162-173 (364)
129 COG1223 Predicted ATPase (AAA+ 52.6 4.7 0.0001 38.3 0.0 42 1-42 157-209 (368)
130 COG3842 PotA ABC-type spermidi 52.5 4.8 0.0001 39.2 0.1 11 2-12 38-48 (352)
131 PF06414 Zeta_toxin: Zeta toxi 51.9 5.1 0.00011 34.9 0.2 12 2-13 22-33 (199)
132 TIGR01618 phage_P_loop phage n 51.6 4.6 0.0001 36.6 -0.2 13 1-13 18-30 (220)
133 KOG1803|consensus 51.2 6.1 0.00013 41.0 0.6 12 2-13 208-219 (649)
134 PRK05703 flhF flagellar biosyn 51.1 5.3 0.00011 39.6 0.1 13 1-13 227-239 (424)
135 PRK14086 dnaA chromosomal repl 50.7 5 0.00011 41.8 -0.1 13 1-13 320-332 (617)
136 PRK08233 hypothetical protein; 49.2 6 0.00013 33.2 0.2 11 2-12 10-20 (182)
137 PHA02544 44 clamp loader, smal 49.2 5.6 0.00012 36.9 0.0 12 1-12 49-60 (316)
138 cd00820 PEPCK_HprK Phosphoenol 48.9 6 0.00013 31.9 0.1 13 1-13 21-33 (107)
139 PF13671 AAA_33: AAA domain; P 48.6 5.5 0.00012 32.0 -0.2 12 1-12 5-16 (143)
140 PF13173 AAA_14: AAA domain 48.5 5.7 0.00012 32.0 -0.1 13 1-13 8-20 (128)
141 PLN03025 replication factor C 48.2 5.8 0.00013 37.3 -0.1 13 1-13 40-52 (319)
142 PRK14721 flhF flagellar biosyn 47.8 6.3 0.00014 39.2 0.1 11 2-12 198-208 (420)
143 PRK11545 gntK gluconate kinase 47.5 6.6 0.00014 33.3 0.2 12 1-12 1-12 (163)
144 KOG0926|consensus 47.3 9.6 0.00021 41.1 1.3 37 2-39 278-323 (1172)
145 PRK00080 ruvB Holliday junctio 47.2 6 0.00013 37.3 -0.1 12 1-12 57-68 (328)
146 PF05729 NACHT: NACHT domain 47.0 6.4 0.00014 31.9 0.0 13 1-13 6-18 (166)
147 PF00485 PRK: Phosphoribulokin 47.0 5.9 0.00013 34.3 -0.2 11 2-12 6-16 (194)
148 TIGR00635 ruvB Holliday juncti 46.4 6.3 0.00014 36.3 -0.1 12 1-12 36-47 (305)
149 CHL00181 cbbX CbbX; Provisiona 46.0 6.7 0.00015 36.7 -0.0 12 1-12 65-76 (287)
150 COG3839 MalK ABC-type sugar tr 45.9 7.1 0.00015 37.8 0.1 11 2-12 36-46 (338)
151 TIGR02880 cbbX_cfxQ probable R 45.3 6.7 0.00015 36.6 -0.1 12 1-12 64-75 (284)
152 PF12774 AAA_6: Hydrolytic ATP 45.1 6.5 0.00014 35.8 -0.3 41 1-42 38-84 (231)
153 TIGR00376 DNA helicase, putati 45.0 6.6 0.00014 41.0 -0.3 13 1-13 179-191 (637)
154 PRK11889 flhF flagellar biosyn 44.5 7.5 0.00016 38.8 0.0 12 2-13 248-259 (436)
155 TIGR02788 VirB11 P-type DNA tr 44.2 7.7 0.00017 36.5 0.1 11 2-12 151-161 (308)
156 cd01127 TrwB Bacterial conjuga 44.2 7.4 0.00016 38.1 -0.0 12 1-12 48-59 (410)
157 PF01637 Arch_ATPase: Archaeal 43.9 6 0.00013 34.0 -0.7 12 1-12 26-37 (234)
158 TIGR02322 phosphon_PhnN phosph 43.8 7.9 0.00017 32.7 0.1 11 2-12 8-18 (179)
159 PRK03992 proteasome-activating 43.6 7.8 0.00017 37.8 0.0 41 1-41 171-222 (389)
160 PRK05480 uridine/cytidine kina 43.5 8 0.00017 33.7 0.1 11 2-12 13-23 (209)
161 PF03215 Rad17: Rad17 cell cyc 43.4 7.6 0.00016 39.6 -0.1 12 1-12 51-62 (519)
162 PTZ00301 uridine kinase; Provi 43.3 8.4 0.00018 34.5 0.2 11 2-12 10-20 (210)
163 PRK00440 rfc replication facto 43.0 7.7 0.00017 35.7 -0.1 12 1-12 44-55 (319)
164 PRK11448 hsdR type I restricti 42.9 7.5 0.00016 43.3 -0.3 13 2-14 440-452 (1123)
165 TIGR01241 FtsH_fam ATP-depende 42.7 7.9 0.00017 38.9 -0.1 12 1-12 94-105 (495)
166 PRK12726 flagellar biosynthesi 42.7 8.5 0.00018 38.1 0.1 13 1-13 212-224 (407)
167 PF10236 DAP3: Mitochondrial r 42.6 8.1 0.00017 36.6 -0.1 13 1-13 29-41 (309)
168 TIGR00595 priA primosomal prot 42.5 8.2 0.00018 39.1 -0.0 13 1-13 3-15 (505)
169 COG1131 CcmA ABC-type multidru 42.4 8.5 0.00018 36.1 0.1 11 2-12 38-48 (293)
170 cd03279 ABC_sbcCD SbcCD and ot 41.7 9.1 0.0002 33.7 0.2 12 1-12 34-45 (213)
171 PRK06547 hypothetical protein; 41.6 8.7 0.00019 33.2 0.0 12 1-12 21-32 (172)
172 PRK10416 signal recognition pa 41.5 8.9 0.00019 36.6 0.1 12 2-13 121-132 (318)
173 KOG0335|consensus 41.5 11 0.00024 38.1 0.8 13 2-14 118-130 (482)
174 PRK14723 flhF flagellar biosyn 41.4 9.2 0.0002 40.9 0.2 12 1-12 191-202 (767)
175 PTZ00112 origin recognition co 41.4 8.4 0.00018 42.2 -0.1 12 1-12 787-798 (1164)
176 TIGR01313 therm_gnt_kin carboh 41.3 9.6 0.00021 31.7 0.2 10 2-11 5-14 (163)
177 PRK07261 topology modulation p 41.2 9.6 0.00021 32.6 0.2 11 2-12 7-17 (171)
178 PF01745 IPT: Isopentenyl tran 40.9 8 0.00017 35.5 -0.3 12 1-12 7-18 (233)
179 PF05872 DUF853: Bacterial pro 40.6 11 0.00024 38.1 0.5 11 2-12 26-36 (502)
180 TIGR00064 ftsY signal recognit 40.6 9.3 0.0002 35.5 0.0 12 2-13 79-90 (272)
181 cd00880 Era_like Era (E. coli 40.1 9.8 0.00021 29.7 0.1 12 2-13 3-14 (163)
182 TIGR00554 panK_bact pantothena 39.8 9.9 0.00021 35.9 0.1 11 2-12 69-79 (290)
183 COG1136 SalX ABC-type antimicr 39.7 9.9 0.00022 34.7 0.1 19 212-230 174-192 (226)
184 PTZ00361 26 proteosome regulat 39.6 9.3 0.0002 38.2 -0.1 41 1-41 223-274 (438)
185 COG4962 CpaF Flp pilus assembl 39.5 9.9 0.00021 37.0 0.0 14 62-75 254-267 (355)
186 TIGR02746 TraC-F-type type-IV 39.1 10 0.00022 40.1 0.1 12 2-13 437-448 (797)
187 cd02020 CMPK Cytidine monophos 38.8 11 0.00024 30.2 0.2 12 1-12 5-16 (147)
188 TIGR00176 mobB molybdopterin-g 38.4 11 0.00023 32.0 0.1 12 2-13 6-17 (155)
189 TIGR00235 udk uridine kinase. 38.4 11 0.00023 33.0 0.1 11 2-12 13-23 (207)
190 cd02021 GntK Gluconate kinase 38.3 11 0.00024 30.8 0.1 12 1-12 5-16 (150)
191 COG0610 Type I site-specific r 38.2 10 0.00022 41.6 -0.1 10 4-13 282-291 (962)
192 PTZ00454 26S protease regulato 38.1 10 0.00022 37.3 -0.1 41 1-41 185-236 (398)
193 PRK00771 signal recognition pa 38.0 10 0.00023 37.8 -0.1 13 1-13 101-113 (437)
194 cd03240 ABC_Rad50 The catalyti 37.9 10 0.00022 33.4 -0.1 12 1-12 28-39 (204)
195 PRK14974 cell division protein 37.7 11 0.00024 36.3 0.1 12 2-13 147-158 (336)
196 cd01124 KaiC KaiC is a circadi 37.1 11 0.00024 31.6 0.0 12 1-12 5-16 (187)
197 PF02702 KdpD: Osmosensitive K 37.1 11 0.00023 34.2 -0.2 12 3-14 13-24 (211)
198 PRK00300 gmk guanylate kinase; 37.0 12 0.00026 32.3 0.1 11 2-12 12-22 (205)
199 PF13304 AAA_21: AAA domain; P 36.8 11 0.00025 31.6 0.0 12 1-12 5-16 (303)
200 PRK06217 hypothetical protein; 36.7 12 0.00027 32.0 0.2 11 2-12 8-18 (183)
201 TIGR02237 recomb_radB DNA repa 36.7 12 0.00026 32.5 0.1 12 1-12 18-29 (209)
202 cd01126 TraG_VirD4 The TraG/Tr 36.4 15 0.00032 35.5 0.7 13 1-13 5-17 (384)
203 PF07693 KAP_NTPase: KAP famil 36.3 12 0.00025 34.7 -0.1 42 1-42 26-83 (325)
204 TIGR00929 VirB4_CagE type IV s 36.2 12 0.00026 39.4 0.1 11 2-12 441-451 (785)
205 COG0630 VirB11 Type IV secreto 36.0 12 0.00027 35.5 0.1 12 2-13 150-161 (312)
206 TIGR02173 cyt_kin_arch cytidyl 36.0 12 0.00026 31.0 0.0 12 1-12 6-17 (171)
207 PTZ00424 helicase 45; Provisio 36.0 12 0.00025 35.8 -0.1 11 2-12 72-82 (401)
208 PF02562 PhoH: PhoH-like prote 36.0 14 0.0003 33.2 0.4 13 1-13 25-37 (205)
209 PRK10536 hypothetical protein; 35.9 13 0.00028 34.8 0.2 13 1-13 80-92 (262)
210 cd03272 ABC_SMC3_euk Eukaryoti 35.8 13 0.00028 33.1 0.2 11 2-12 30-40 (243)
211 PRK10078 ribose 1,5-bisphospho 35.3 13 0.00028 32.0 0.1 11 2-12 9-19 (186)
212 PRK13909 putative recombinatio 35.2 12 0.00027 40.6 -0.1 10 4-13 7-16 (910)
213 TIGR00231 small_GTP small GTP- 35.2 12 0.00026 29.2 -0.1 12 1-12 7-18 (161)
214 PF02463 SMC_N: RecF/RecN/SMC 35.1 11 0.00024 33.0 -0.4 12 1-12 30-41 (220)
215 cd01983 Fer4_NifH The Fer4_Nif 35.1 12 0.00026 27.1 -0.1 14 1-14 5-18 (99)
216 cd03242 ABC_RecF RecF is a rec 35.0 12 0.00027 34.3 -0.1 12 1-12 27-38 (270)
217 cd03238 ABC_UvrA The excision 35.0 13 0.00028 32.2 0.1 11 2-12 28-38 (176)
218 PHA00729 NTP-binding motif con 34.9 13 0.00028 34.0 0.0 13 1-13 23-35 (226)
219 TIGR03689 pup_AAA proteasome A 34.6 13 0.00028 37.9 -0.0 12 1-12 222-233 (512)
220 smart00488 DEXDc2 DEAD-like he 34.2 13 0.00029 34.7 0.0 13 2-14 34-46 (289)
221 smart00489 DEXDc3 DEAD-like he 34.2 13 0.00029 34.7 0.0 13 2-14 34-46 (289)
222 PRK14729 miaA tRNA delta(2)-is 34.2 15 0.00033 34.9 0.3 11 2-12 11-21 (300)
223 PF05707 Zot: Zonular occluden 34.1 13 0.00027 32.4 -0.2 13 1-13 6-18 (193)
224 PF12775 AAA_7: P-loop contain 34.1 14 0.0003 34.4 0.1 13 1-13 39-51 (272)
225 COG1118 CysA ABC-type sulfate/ 34.0 14 0.00029 35.7 0.0 12 1-12 34-45 (345)
226 TIGR03744 traC_PFL_4706 conjug 33.9 14 0.0003 40.2 0.0 12 1-12 481-492 (893)
227 PRK11784 tRNA 2-selenouridine 33.9 14 0.0003 35.8 0.0 12 1-12 147-158 (345)
228 cd03278 ABC_SMC_barmotin Barmo 33.8 13 0.00028 32.6 -0.2 12 1-12 28-39 (197)
229 TIGR00609 recB exodeoxyribonuc 33.7 13 0.00028 41.3 -0.2 38 161-204 301-339 (1087)
230 PRK12724 flagellar biosynthesi 33.7 14 0.00031 36.9 0.1 12 2-13 230-241 (432)
231 PRK12727 flagellar biosynthesi 33.6 14 0.00031 38.0 0.1 12 2-13 357-368 (559)
232 PF04665 Pox_A32: Poxvirus A32 33.4 15 0.00032 33.9 0.1 12 2-13 20-31 (241)
233 cd00268 DEADc DEAD-box helicas 33.4 14 0.00031 31.5 0.1 11 2-12 43-53 (203)
234 TIGR01188 drrA daunorubicin re 33.3 15 0.00032 34.3 0.1 11 2-12 26-36 (302)
235 cd02019 NK Nucleoside/nucleoti 33.2 15 0.00032 26.6 0.1 11 2-12 6-16 (69)
236 PRK09270 nucleoside triphospha 33.1 15 0.00032 32.8 0.1 11 2-12 40-50 (229)
237 PRK00131 aroK shikimate kinase 33.1 14 0.00031 30.4 0.0 12 1-12 10-21 (175)
238 cd03225 ABC_cobalt_CbiO_domain 32.9 15 0.00032 31.9 0.1 11 2-12 34-44 (211)
239 cd03293 ABC_NrtD_SsuB_transpor 32.9 15 0.00032 32.2 0.1 11 2-12 37-47 (220)
240 PF10412 TrwB_AAD_bind: Type I 32.8 13 0.00027 36.3 -0.4 12 2-13 22-33 (386)
241 KOG2373|consensus 32.7 18 0.0004 35.7 0.7 12 2-13 280-291 (514)
242 cd02028 UMPK_like Uridine mono 32.7 16 0.00034 31.6 0.2 12 2-13 6-17 (179)
243 cd03276 ABC_SMC6_euk Eukaryoti 32.7 14 0.0003 32.4 -0.1 12 1-12 27-38 (198)
244 PRK10876 recB exonuclease V su 32.5 14 0.0003 41.5 -0.2 14 191-204 407-420 (1181)
245 cd03258 ABC_MetN_methionine_tr 32.5 15 0.00033 32.4 0.1 11 2-12 38-48 (233)
246 TIGR01587 cas3_core CRISPR-ass 32.4 16 0.00035 34.4 0.2 11 2-12 6-16 (358)
247 PF06048 DUF927: Domain of unk 32.4 14 0.0003 34.4 -0.2 12 1-12 199-210 (286)
248 TIGR03608 L_ocin_972_ABC putat 32.2 16 0.00034 31.6 0.1 11 2-12 31-41 (206)
249 PF13481 AAA_25: AAA domain; P 32.2 12 0.00026 31.8 -0.7 13 1-13 38-50 (193)
250 TIGR01166 cbiO cobalt transpor 32.0 16 0.00034 31.3 0.1 11 2-12 25-35 (190)
251 cd04163 Era Era subfamily. Er 31.9 16 0.00035 29.0 0.1 11 2-12 10-20 (168)
252 PRK13873 conjugal transfer ATP 31.9 16 0.00035 39.1 0.1 12 1-12 447-458 (811)
253 cd03255 ABC_MJ0796_Lo1CDE_FtsE 31.5 16 0.00035 31.9 0.1 11 2-12 37-47 (218)
254 TIGR03263 guanyl_kin guanylate 31.4 16 0.00035 30.7 0.1 12 1-12 7-18 (180)
255 PRK04837 ATP-dependent RNA hel 31.4 16 0.00034 35.6 -0.0 11 2-12 52-62 (423)
256 cd03115 SRP The signal recogni 31.4 16 0.00036 30.6 0.1 13 1-13 6-18 (173)
257 cd00071 GMPK Guanosine monopho 31.3 16 0.00035 30.0 0.1 11 2-12 6-16 (137)
258 TIGR02673 FtsE cell division A 31.3 16 0.00036 31.7 0.1 11 2-12 35-45 (214)
259 COG3587 Restriction endonuclea 31.1 18 0.0004 39.1 0.4 10 3-12 82-91 (985)
260 cd03226 ABC_cobalt_CbiO_domain 31.1 17 0.00036 31.6 0.1 11 2-12 33-43 (205)
261 PF00005 ABC_tran: ABC transpo 31.0 14 0.00031 29.4 -0.3 11 2-12 18-28 (137)
262 TIGR00960 3a0501s02 Type II (G 30.8 17 0.00037 31.7 0.1 11 2-12 36-46 (216)
263 cd03256 ABC_PhnC_transporter A 30.7 17 0.00037 32.2 0.1 11 2-12 34-44 (241)
264 PRK04195 replication factor C 30.7 16 0.00034 36.6 -0.1 12 1-12 45-56 (482)
265 PRK05342 clpX ATP-dependent pr 30.6 17 0.00036 36.1 -0.0 12 1-12 114-125 (412)
266 PRK13342 recombination factor 30.5 16 0.00035 35.8 -0.1 12 1-12 42-53 (413)
267 PRK08118 topology modulation p 30.5 18 0.0004 30.8 0.2 11 2-12 8-18 (167)
268 PRK13341 recombination factor 30.3 16 0.00036 38.8 -0.1 13 1-13 58-70 (725)
269 PRK13891 conjugal transfer pro 30.3 17 0.00038 39.2 0.1 12 1-12 494-505 (852)
270 cd03264 ABC_drug_resistance_li 30.3 17 0.00038 31.5 0.1 11 2-12 32-42 (211)
271 PRK11331 5-methylcytosine-spec 30.2 17 0.00037 36.6 -0.0 12 1-12 200-211 (459)
272 cd03265 ABC_DrrA DrrA is the A 29.9 18 0.00039 31.7 0.1 11 2-12 33-43 (220)
273 CHL00195 ycf46 Ycf46; Provisio 29.9 17 0.00037 36.9 -0.1 41 1-41 265-316 (489)
274 cd03229 ABC_Class3 This class 29.8 18 0.00039 30.8 0.1 11 2-12 33-43 (178)
275 PRK11776 ATP-dependent RNA hel 29.8 18 0.00039 35.6 0.1 11 2-12 48-58 (460)
276 PRK13537 nodulation ABC transp 29.8 18 0.00039 33.9 0.1 12 1-12 39-50 (306)
277 COG4096 HsdR Type I site-speci 29.7 20 0.00044 38.6 0.5 11 3-13 193-203 (875)
278 PF04548 AIG1: AIG1 family; I 29.6 18 0.00039 31.9 0.1 11 2-12 7-17 (212)
279 cd03275 ABC_SMC1_euk Eukaryoti 29.5 17 0.00037 32.8 -0.1 12 1-12 28-39 (247)
280 cd03273 ABC_SMC2_euk Eukaryoti 29.5 19 0.0004 32.5 0.1 12 1-12 31-42 (251)
281 TIGR01360 aden_kin_iso1 adenyl 29.4 20 0.00043 30.1 0.3 11 2-12 10-20 (188)
282 COG1122 CbiO ABC-type cobalt t 29.3 17 0.00037 33.2 -0.2 12 1-12 36-47 (235)
283 TIGR01243 CDC48 AAA family ATP 29.3 18 0.0004 38.1 0.0 12 1-12 218-229 (733)
284 PRK04040 adenylate kinase; Pro 29.2 17 0.00037 31.8 -0.2 12 1-12 8-19 (188)
285 PRK04296 thymidine kinase; Pro 29.1 15 0.00032 32.0 -0.6 14 1-14 8-21 (190)
286 TIGR03819 heli_sec_ATPase heli 29.1 19 0.00041 34.6 0.1 12 2-13 185-196 (340)
287 TIGR03522 GldA_ABC_ATP gliding 29.1 19 0.00041 33.6 0.1 11 2-12 35-45 (301)
288 PRK13721 conjugal transfer ATP 29.1 19 0.00041 38.8 0.1 11 2-12 456-466 (844)
289 PRK15177 Vi polysaccharide exp 29.0 19 0.00041 31.7 0.1 34 203-236 174-207 (213)
290 cd03262 ABC_HisP_GlnQ_permease 29.0 19 0.00041 31.2 0.1 11 2-12 33-43 (213)
291 PRK10246 exonuclease subunit S 29.0 33 0.00071 38.0 1.9 12 1-12 36-47 (1047)
292 cd03222 ABC_RNaseL_inhibitor T 29.0 18 0.00038 31.5 -0.1 11 2-12 32-42 (177)
293 PRK11629 lolD lipoprotein tran 29.0 19 0.00041 31.9 0.1 11 2-12 42-52 (233)
294 TIGR01288 nodI ATP-binding ABC 28.9 19 0.00041 33.6 0.1 11 2-12 37-47 (303)
295 TIGR00382 clpX endopeptidase C 28.9 18 0.00039 35.9 -0.1 12 1-12 122-133 (413)
296 cd03261 ABC_Org_Solvent_Resist 28.8 19 0.00042 31.9 0.1 11 2-12 33-43 (235)
297 PRK13538 cytochrome c biogenes 28.8 19 0.00042 31.2 0.1 11 2-12 34-44 (204)
298 cd03259 ABC_Carb_Solutes_like 28.7 19 0.00042 31.3 0.1 11 2-12 33-43 (213)
299 COG0552 FtsY Signal recognitio 28.6 20 0.00044 34.7 0.2 11 2-12 146-156 (340)
300 COG1222 RPT1 ATP-dependent 26S 28.5 21 0.00045 35.2 0.2 39 1-42 191-243 (406)
301 cd03260 ABC_PstB_phosphate_tra 28.5 20 0.00042 31.6 0.1 11 2-12 33-43 (227)
302 PRK06696 uridine kinase; Valid 28.4 21 0.00045 31.7 0.2 11 2-12 29-39 (223)
303 TIGR00073 hypB hydrogenase acc 28.3 20 0.00043 31.4 0.1 11 2-12 29-39 (207)
304 cd03245 ABCC_bacteriocin_expor 28.3 20 0.00043 31.3 0.1 11 2-12 37-47 (220)
305 PRK05416 glmZ(sRNA)-inactivati 28.2 20 0.00043 33.8 0.0 12 2-13 13-24 (288)
306 cd01123 Rad51_DMC1_radA Rad51_ 28.1 21 0.00045 31.4 0.1 12 1-12 25-36 (235)
307 PHA02653 RNA helicase NPH-II; 28.0 24 0.00051 37.3 0.6 11 1-11 185-195 (675)
308 PRK07667 uridine kinase; Provi 27.9 21 0.00046 31.0 0.2 11 2-12 24-34 (193)
309 cd03292 ABC_FtsE_transporter F 27.9 20 0.00044 31.0 0.1 11 2-12 34-44 (214)
310 cd03269 ABC_putative_ATPase Th 27.9 20 0.00044 31.1 0.1 11 2-12 33-43 (210)
311 cd03235 ABC_Metallic_Cations A 27.8 20 0.00044 31.1 0.1 11 2-12 32-42 (213)
312 cd03297 ABC_ModC_molybdenum_tr 27.7 21 0.00044 31.2 0.1 11 2-12 30-40 (214)
313 PRK06762 hypothetical protein; 27.7 22 0.00047 29.6 0.2 11 1-11 8-18 (166)
314 cd03263 ABC_subfamily_A The AB 27.7 21 0.00045 31.2 0.1 11 2-12 35-45 (220)
315 TIGR03265 PhnT2 putative 2-ami 27.7 21 0.00045 34.5 0.1 12 1-12 36-47 (353)
316 PF00063 Myosin_head: Myosin h 27.6 18 0.0004 37.8 -0.3 11 2-12 92-102 (689)
317 PRK13536 nodulation factor exp 27.5 21 0.00045 34.2 0.1 11 2-12 74-84 (340)
318 PRK13853 type IV secretion sys 27.4 19 0.00042 38.5 -0.2 12 1-12 432-443 (789)
319 TIGR00602 rad24 checkpoint pro 27.4 20 0.00043 37.6 -0.1 12 1-12 116-127 (637)
320 COG4148 ModC ABC-type molybdat 27.4 22 0.00048 34.1 0.2 12 1-12 30-41 (352)
321 cd03214 ABC_Iron-Siderophores_ 27.4 21 0.00046 30.4 0.1 11 2-12 32-42 (180)
322 PF03969 AFG1_ATPase: AFG1-lik 27.4 22 0.00047 34.7 0.2 43 1-43 68-111 (362)
323 PRK09825 idnK D-gluconate kina 27.3 21 0.00046 30.7 0.1 11 2-12 10-20 (176)
324 cd03296 ABC_CysA_sulfate_impor 27.3 21 0.00046 31.7 0.1 11 2-12 35-45 (239)
325 TIGR03864 PQQ_ABC_ATP ABC tran 27.3 21 0.00046 31.7 0.1 11 2-12 34-44 (236)
326 TIGR01359 UMP_CMP_kin_fam UMP- 27.2 21 0.00046 30.1 0.0 12 1-12 5-16 (183)
327 PRK14242 phosphate transporter 27.2 21 0.00046 32.0 0.1 11 2-12 39-49 (253)
328 cd02024 NRK1 Nicotinamide ribo 27.1 22 0.00049 31.2 0.2 11 2-12 6-16 (187)
329 PRK10584 putative ABC transpor 27.1 22 0.00047 31.3 0.1 11 2-12 43-53 (228)
330 PF13166 AAA_13: AAA domain 27.0 22 0.00048 37.0 0.2 10 1-10 22-31 (712)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 27.0 22 0.00047 29.4 0.1 11 2-12 33-43 (144)
332 cd03301 ABC_MalK_N The N-termi 27.0 22 0.00047 30.9 0.1 11 2-12 33-43 (213)
333 PRK13539 cytochrome c biogenes 26.9 22 0.00047 31.0 0.1 11 2-12 35-45 (207)
334 cd03218 ABC_YhbG The ABC trans 26.9 22 0.00047 31.3 0.1 12 1-12 32-43 (232)
335 cd00882 Ras_like_GTPase Ras-li 26.8 22 0.00047 27.1 0.0 12 1-12 2-13 (157)
336 COG1117 PstB ABC-type phosphat 26.7 40 0.00086 31.2 1.7 11 2-12 40-50 (253)
337 TIGR02688 conserved hypothetic 26.7 23 0.00049 35.7 0.1 14 1-14 215-228 (449)
338 PRK13646 cbiO cobalt transport 26.6 22 0.00048 32.8 0.1 11 2-12 40-50 (286)
339 cd03219 ABC_Mj1267_LivG_branch 26.5 22 0.00048 31.4 0.1 12 1-12 32-43 (236)
340 PRK10875 recD exonuclease V su 26.5 21 0.00045 37.3 -0.1 11 2-12 174-184 (615)
341 TIGR02858 spore_III_AA stage I 26.5 20 0.00044 33.4 -0.2 12 1-12 117-128 (270)
342 TIGR02640 gas_vesic_GvpN gas v 26.4 22 0.00047 32.6 -0.0 12 1-12 27-38 (262)
343 PLN02165 adenylate isopentenyl 26.3 24 0.00052 34.1 0.3 11 2-12 50-60 (334)
344 PLN02796 D-glycerate 3-kinase 26.3 22 0.00048 34.5 0.0 11 2-12 107-117 (347)
345 PRK14961 DNA polymerase III su 26.2 22 0.00047 34.2 -0.1 12 1-12 44-55 (363)
346 TIGR02211 LolD_lipo_ex lipopro 26.2 23 0.00049 31.0 0.1 11 2-12 38-48 (221)
347 cd03257 ABC_NikE_OppD_transpor 26.2 23 0.00049 31.0 0.1 11 2-12 38-48 (228)
348 TIGR03410 urea_trans_UrtE urea 26.1 23 0.0005 31.2 0.1 12 1-12 32-43 (230)
349 PHA02244 ATPase-like protein 26.1 22 0.00049 35.0 0.0 12 1-12 125-136 (383)
350 COG1126 GlnQ ABC-type polar am 26.1 24 0.00051 32.6 0.2 11 2-12 35-45 (240)
351 COG4152 ABC-type uncharacteriz 26.1 28 0.0006 32.9 0.6 11 2-12 35-45 (300)
352 COG0419 SbcC ATPase involved i 26.0 24 0.00052 38.3 0.2 12 1-12 31-42 (908)
353 PF01926 MMR_HSR1: 50S ribosom 26.0 20 0.00043 27.9 -0.3 12 1-12 5-16 (116)
354 TIGR00972 3a0107s01c2 phosphat 26.0 23 0.0005 31.7 0.1 11 2-12 34-44 (247)
355 cd01876 YihA_EngB The YihA (En 25.9 23 0.00049 28.2 -0.0 11 2-12 6-16 (170)
356 cd01379 MYSc_type_III Myosin m 25.9 25 0.00054 37.0 0.3 11 2-12 93-103 (653)
357 PRK11432 fbpC ferric transport 25.8 23 0.0005 34.1 0.0 11 2-12 39-49 (351)
358 TIGR01447 recD exodeoxyribonuc 25.8 23 0.00049 36.8 -0.0 11 2-12 167-177 (586)
359 TIGR01425 SRP54_euk signal rec 25.7 23 0.00051 35.3 0.1 11 2-12 107-117 (429)
360 cd03224 ABC_TM1139_LivF_branch 25.7 23 0.00051 30.8 0.1 11 2-12 33-43 (222)
361 PF08477 Miro: Miro-like prote 25.6 26 0.00057 26.9 0.3 11 2-12 6-16 (119)
362 PRK13645 cbiO cobalt transport 25.5 24 0.00052 32.6 0.1 11 2-12 44-54 (289)
363 PRK11650 ugpC glycerol-3-phosp 25.5 24 0.00051 34.1 0.0 12 1-12 36-47 (356)
364 TIGR01978 sufC FeS assembly AT 25.3 25 0.00053 31.2 0.1 11 2-12 33-43 (243)
365 PRK10867 signal recognition pa 25.3 24 0.00053 35.2 0.1 12 2-13 107-118 (433)
366 cd03241 ABC_RecN RecN ATPase i 25.3 25 0.00053 32.4 0.1 12 1-12 27-38 (276)
367 cd01394 radB RadB. The archaea 25.3 25 0.00054 30.7 0.2 12 1-12 25-36 (218)
368 PRK11607 potG putrescine trans 25.3 24 0.00052 34.4 0.1 12 1-12 51-62 (377)
369 TIGR02315 ABC_phnC phosphonate 25.2 24 0.00053 31.3 0.1 11 2-12 35-45 (243)
370 KOG0745|consensus 25.2 27 0.00059 35.4 0.4 25 211-235 471-495 (564)
371 PRK09493 glnQ glutamine ABC tr 25.2 24 0.00053 31.3 0.1 11 2-12 34-44 (240)
372 COG1074 RecB ATP-dependent exo 25.1 25 0.00055 39.3 0.2 10 4-13 25-34 (1139)
373 CHL00176 ftsH cell division pr 25.1 23 0.0005 37.1 -0.1 12 1-12 222-233 (638)
374 TIGR01189 ccmA heme ABC export 25.1 25 0.00053 30.3 0.1 11 2-12 33-43 (198)
375 PRK13650 cbiO cobalt transport 25.1 25 0.00053 32.4 0.1 11 2-12 40-50 (279)
376 PRK11124 artP arginine transpo 25.0 25 0.00053 31.3 0.1 11 2-12 35-45 (242)
377 cd03290 ABCC_SUR1_N The SUR do 25.0 25 0.00054 30.8 0.1 11 2-12 34-44 (218)
378 TIGR00959 ffh signal recogniti 25.0 24 0.00053 35.1 0.0 12 2-13 106-117 (428)
379 PRK13541 cytochrome c biogenes 25.0 25 0.00054 30.3 0.1 11 2-12 33-43 (195)
380 cd00464 SK Shikimate kinase (S 24.9 24 0.00051 28.6 -0.1 12 1-12 5-16 (154)
381 smart00053 DYNc Dynamin, GTPas 24.8 2.1E+02 0.0045 26.2 6.1 53 211-281 84-136 (240)
382 PRK11248 tauB taurine transpor 24.7 25 0.00055 31.9 0.1 11 2-12 34-44 (255)
383 PRK14240 phosphate transporter 24.7 25 0.00055 31.4 0.1 11 2-12 36-46 (250)
384 cd03298 ABC_ThiQ_thiamine_tran 24.7 25 0.00055 30.5 0.1 11 2-12 31-41 (211)
385 cd01428 ADK Adenylate kinase ( 24.6 25 0.00054 29.7 0.0 12 1-12 5-16 (194)
386 PF03668 ATP_bind_2: P-loop AT 24.6 58 0.0013 30.8 2.5 11 2-12 8-18 (284)
387 cd02027 APSK Adenosine 5'-phos 24.5 27 0.00058 29.1 0.2 12 1-12 5-16 (149)
388 PF05496 RuvB_N: Holliday junc 24.5 24 0.00052 32.5 -0.1 12 1-12 56-67 (233)
389 cd03252 ABCC_Hemolysin The ABC 24.5 25 0.00055 31.1 0.1 11 2-12 35-45 (237)
390 KOG0726|consensus 24.5 22 0.00047 34.4 -0.4 42 1-42 225-277 (440)
391 TIGR00101 ureG urease accessor 24.4 26 0.00056 30.9 0.1 11 2-12 8-18 (199)
392 PRK13651 cobalt transporter AT 24.3 26 0.00056 33.0 0.1 11 2-12 40-50 (305)
393 PF14532 Sigma54_activ_2: Sigm 24.3 24 0.00051 28.8 -0.2 12 1-12 27-38 (138)
394 PRK09452 potA putrescine/sperm 24.3 26 0.00055 34.2 0.0 12 1-12 46-57 (375)
395 cd03239 ABC_SMC_head The struc 24.3 24 0.00052 30.5 -0.1 12 1-12 28-39 (178)
396 cd03254 ABCC_Glucan_exporter_l 24.3 26 0.00056 30.8 0.1 11 2-12 36-46 (229)
397 PRK14494 putative molybdopteri 24.3 25 0.00054 32.1 -0.1 12 2-13 8-19 (229)
398 PRK04182 cytidylate kinase; Pr 24.2 27 0.00059 29.0 0.2 11 2-12 7-17 (180)
399 TIGR01184 ntrCD nitrate transp 24.2 26 0.00057 31.1 0.1 11 2-12 18-28 (230)
400 PRK03839 putative kinase; Prov 24.2 27 0.00059 29.5 0.2 12 1-12 6-17 (180)
401 cd03237 ABC_RNaseL_inhibitor_d 24.1 26 0.00057 31.8 0.1 11 2-12 32-42 (246)
402 cd03249 ABC_MTABC3_MDL1_MDL2 M 24.0 25 0.00055 31.1 -0.0 11 2-12 36-46 (238)
403 TIGR01187 potA spermidine/putr 23.8 27 0.00058 33.1 0.1 12 1-12 2-13 (325)
404 COG0444 DppD ABC-type dipeptid 23.8 27 0.00058 33.6 0.1 12 2-13 38-49 (316)
405 cd00227 CPT Chloramphenicol (C 23.8 28 0.00061 29.5 0.2 11 2-12 9-19 (175)
406 TIGR01243 CDC48 AAA family ATP 23.8 26 0.00056 37.1 -0.1 42 1-42 493-545 (733)
407 PRK11022 dppD dipeptide transp 23.8 26 0.00056 33.3 -0.0 11 2-12 40-50 (326)
408 cd00267 ABC_ATPase ABC (ATP-bi 23.8 27 0.00059 28.8 0.1 11 2-12 32-42 (157)
409 KOG0922|consensus 23.8 33 0.00071 36.1 0.7 11 2-12 73-83 (674)
410 PRK11231 fecE iron-dicitrate t 23.8 27 0.00059 31.4 0.1 11 2-12 35-45 (255)
411 TIGR02639 ClpA ATP-dependent C 23.7 26 0.00056 37.1 -0.1 12 1-12 490-501 (731)
412 cd04164 trmE TrmE (MnmE, ThdF, 23.7 27 0.00059 27.6 0.1 11 2-12 8-18 (157)
413 PRK11144 modC molybdate transp 23.7 27 0.00059 33.5 0.1 11 2-12 31-41 (352)
414 TIGR02759 TraD_Ftype type IV c 23.6 26 0.00055 36.2 -0.1 12 1-12 182-193 (566)
415 TIGR03258 PhnT 2-aminoethylpho 23.6 27 0.00059 33.8 0.1 12 1-12 37-48 (362)
416 PRK03695 vitamin B12-transport 23.6 27 0.00059 31.4 0.1 11 2-12 29-39 (248)
417 cd03295 ABC_OpuCA_Osmoprotecti 23.6 27 0.00059 31.1 0.1 11 2-12 34-44 (242)
418 cd03283 ABC_MutS-like MutS-lik 23.6 28 0.00061 30.6 0.2 11 2-12 32-42 (199)
419 cd01393 recA_like RecA is a b 23.6 29 0.00062 30.3 0.2 12 1-12 25-36 (226)
420 PRK00091 miaA tRNA delta(2)-is 23.5 30 0.00065 32.9 0.3 11 2-12 11-21 (307)
421 TIGR02397 dnaX_nterm DNA polym 23.5 27 0.00058 32.8 -0.0 12 1-12 42-53 (355)
422 PRK14248 phosphate ABC transpo 23.5 27 0.00059 31.7 0.1 11 2-12 54-64 (268)
423 TIGR00611 recf recF protein. A 23.5 25 0.00055 34.1 -0.2 12 1-12 29-40 (365)
424 PRK10865 protein disaggregatio 23.4 26 0.00057 37.9 -0.1 12 1-12 604-615 (857)
425 PRK14251 phosphate ABC transpo 23.4 28 0.0006 31.2 0.1 11 2-12 37-47 (251)
426 PRK14261 phosphate ABC transpo 23.4 28 0.0006 31.3 0.1 11 2-12 39-49 (253)
427 cd03268 ABC_BcrA_bacitracin_re 23.4 28 0.0006 30.2 0.1 11 2-12 33-43 (208)
428 TIGR00390 hslU ATP-dependent p 23.2 27 0.00059 35.0 0.0 12 1-12 53-64 (441)
429 TIGR00643 recG ATP-dependent D 23.2 27 0.00059 36.3 -0.0 11 2-12 263-273 (630)
430 PRK08533 flagellar accessory p 23.2 27 0.00058 31.4 -0.0 12 1-12 30-41 (230)
431 cd03223 ABCD_peroxisomal_ALDP 23.2 28 0.00061 29.3 0.1 11 2-12 34-44 (166)
432 COG0563 Adk Adenylate kinase a 23.2 31 0.00066 30.1 0.3 11 2-12 7-17 (178)
433 cd03233 ABC_PDR_domain1 The pl 23.2 28 0.00061 30.3 0.1 11 2-12 40-50 (202)
434 cd03251 ABCC_MsbA MsbA is an e 23.1 28 0.00061 30.7 0.1 11 2-12 35-45 (234)
435 PRK13548 hmuV hemin importer A 23.0 28 0.00062 31.5 0.1 11 2-12 35-45 (258)
436 PRK09361 radB DNA repair and r 23.0 29 0.00062 30.5 0.1 13 1-13 29-41 (225)
437 CHL00081 chlI Mg-protoporyphyr 23.0 27 0.00058 34.0 -0.1 13 1-13 44-56 (350)
438 PRK13638 cbiO cobalt transport 23.0 29 0.00062 31.7 0.1 11 2-12 34-44 (271)
439 PRK11264 putative amino-acid A 23.0 29 0.00062 31.0 0.1 11 2-12 36-46 (250)
440 PRK11701 phnK phosphonate C-P 22.9 28 0.00062 31.3 0.1 11 2-12 39-49 (258)
441 PRK09544 znuC high-affinity zi 22.9 29 0.00062 31.5 0.1 11 2-12 37-47 (251)
442 cd03250 ABCC_MRP_domain1 Domai 22.9 29 0.00063 30.0 0.1 11 2-12 38-48 (204)
443 cd03228 ABCC_MRP_Like The MRP 22.9 29 0.00062 29.3 0.1 11 2-12 35-45 (171)
444 TIGR03881 KaiC_arch_4 KaiC dom 22.9 29 0.00062 30.6 0.1 12 1-12 26-37 (229)
445 KOG1970|consensus 22.8 33 0.00071 35.6 0.5 11 2-12 117-127 (634)
446 PRK10851 sulfate/thiosulfate t 22.8 29 0.00062 33.4 0.1 12 1-12 34-45 (353)
447 COG0324 MiaA tRNA delta(2)-iso 22.8 30 0.00065 33.1 0.2 12 1-12 9-20 (308)
448 cd03294 ABC_Pro_Gly_Bertaine T 22.8 29 0.00063 31.7 0.1 11 2-12 57-67 (269)
449 PRK14250 phosphate ABC transpo 22.7 29 0.00063 31.0 0.1 11 2-12 36-46 (241)
450 PRK11131 ATP-dependent RNA hel 22.6 30 0.00065 39.3 0.1 11 2-12 96-106 (1294)
451 PRK11000 maltose/maltodextrin 22.5 29 0.00063 33.6 0.0 11 2-12 36-46 (369)
452 cd03114 ArgK-like The function 22.4 29 0.00062 29.1 -0.0 12 2-13 6-17 (148)
453 CHL00131 ycf16 sulfate ABC tra 22.4 30 0.00065 30.9 0.1 11 2-12 40-50 (252)
454 cd03246 ABCC_Protease_Secretio 22.4 30 0.00065 29.2 0.1 12 1-12 34-45 (173)
455 COG4555 NatA ABC-type Na+ tran 22.4 35 0.00075 31.4 0.5 12 1-12 34-45 (245)
456 PRK14530 adenylate kinase; Pro 22.3 31 0.00068 30.3 0.2 11 2-12 10-20 (215)
457 PRK10895 lipopolysaccharide AB 22.3 30 0.00065 30.7 0.1 12 1-12 35-46 (241)
458 PRK13830 conjugal transfer pro 22.3 30 0.00065 37.3 0.1 13 1-13 462-474 (818)
459 PRK10247 putative ABC transpor 22.2 30 0.00065 30.5 0.1 11 2-12 40-50 (225)
460 PF08423 Rad51: Rad51; InterP 22.2 25 0.00055 32.2 -0.4 11 1-11 44-54 (256)
461 cd03216 ABC_Carb_Monos_I This 22.2 30 0.00066 29.0 0.1 11 2-12 33-43 (163)
462 PRK13647 cbiO cobalt transport 22.2 30 0.00064 31.8 0.0 11 2-12 38-48 (274)
463 TIGR00750 lao LAO/AO transport 22.2 31 0.00067 32.3 0.1 12 2-13 41-52 (300)
464 PRK14269 phosphate ABC transpo 22.2 30 0.00066 30.9 0.1 11 2-12 35-45 (246)
465 PRK05541 adenylylsulfate kinas 22.1 31 0.00068 29.0 0.2 11 2-12 14-24 (176)
466 TIGR02903 spore_lon_C ATP-depe 22.1 28 0.00062 36.2 -0.1 12 1-12 181-192 (615)
467 PRK14245 phosphate ABC transpo 22.1 30 0.00066 30.9 0.1 11 2-12 36-46 (250)
468 cd03243 ABC_MutS_homologs The 22.1 32 0.0007 29.9 0.2 12 2-13 36-47 (202)
469 PRK13652 cbiO cobalt transport 22.0 31 0.00066 31.7 0.1 11 2-12 37-47 (277)
470 PRK13634 cbiO cobalt transport 22.0 30 0.00065 32.1 0.0 11 2-12 40-50 (290)
471 PRK06067 flagellar accessory p 22.0 31 0.00067 30.6 0.1 12 1-12 31-42 (234)
472 cd03248 ABCC_TAP TAP, the Tran 22.0 31 0.00066 30.3 0.1 11 2-12 47-57 (226)
473 TIGR02323 CP_lyasePhnK phospho 22.0 31 0.00067 30.9 0.1 11 2-12 36-46 (253)
474 TIGR03411 urea_trans_UrtD urea 21.9 31 0.00067 30.6 0.1 11 2-12 35-45 (242)
475 PRK10908 cell division protein 21.9 31 0.00067 30.3 0.1 11 2-12 35-45 (222)
476 cd03266 ABC_NatA_sodium_export 21.9 31 0.00068 30.0 0.1 11 2-12 38-48 (218)
477 PRK14262 phosphate ABC transpo 21.9 31 0.00067 30.8 0.1 11 2-12 36-46 (250)
478 PRK14970 DNA polymerase III su 21.8 29 0.00064 33.0 -0.1 12 1-12 45-56 (367)
479 PRK14273 phosphate ABC transpo 21.8 31 0.00068 30.9 0.1 11 2-12 40-50 (254)
480 cd03215 ABC_Carb_Monos_II This 21.8 31 0.00068 29.4 0.1 12 1-12 32-43 (182)
481 PF00158 Sigma54_activat: Sigm 21.7 29 0.00062 29.8 -0.2 32 199-230 93-124 (168)
482 PRK13648 cbiO cobalt transport 21.7 31 0.00068 31.4 0.1 11 2-12 42-52 (269)
483 PRK11034 clpA ATP-dependent Cl 21.7 31 0.00066 37.0 0.0 12 1-12 494-505 (758)
484 PRK13649 cbiO cobalt transport 21.7 31 0.00068 31.5 0.1 11 2-12 40-50 (280)
485 PRK14259 phosphate ABC transpo 21.7 31 0.00068 31.5 0.1 11 2-12 46-56 (269)
486 TIGR02236 recomb_radA DNA repa 21.6 32 0.0007 32.0 0.1 12 1-12 101-112 (310)
487 smart00242 MYSc Myosin. Large 21.5 35 0.00075 36.0 0.3 11 2-12 99-109 (677)
488 PRK10744 pstB phosphate transp 21.5 32 0.00069 31.1 0.1 11 2-12 46-56 (260)
489 TIGR03005 ectoine_ehuA ectoine 21.5 32 0.00069 30.8 0.1 11 2-12 33-43 (252)
490 KOG0990|consensus 21.4 41 0.00089 32.7 0.8 41 1-41 68-122 (360)
491 PF02810 SEC-C: SEC-C motif; 21.4 38 0.00083 19.5 0.4 8 4-11 7-14 (21)
492 TIGR00618 sbcc exonuclease Sbc 21.4 30 0.00066 38.1 -0.1 12 1-12 32-43 (1042)
493 cd03270 ABC_UvrA_I The excisio 21.4 31 0.00068 30.7 -0.0 14 1-14 27-40 (226)
494 cd03247 ABCC_cytochrome_bd The 21.4 32 0.0007 29.1 0.1 11 2-12 35-45 (178)
495 PRK13635 cbiO cobalt transport 21.4 32 0.00069 31.7 0.0 11 2-12 40-50 (279)
496 PRK13540 cytochrome c biogenes 21.3 32 0.0007 29.7 0.1 11 2-12 34-44 (200)
497 PRK10771 thiQ thiamine transpo 21.3 32 0.0007 30.4 0.1 11 2-12 32-42 (232)
498 cd01852 AIG1 AIG1 (avrRpt2-ind 21.3 34 0.00074 29.4 0.2 11 2-12 7-17 (196)
499 KOG1882|consensus 21.3 1.4E+02 0.0031 27.9 4.2 42 238-284 211-253 (293)
500 PF03029 ATP_bind_1: Conserved 21.2 30 0.00065 31.5 -0.2 13 2-14 3-15 (238)
No 1
>KOG4280|consensus
Probab=100.00 E-value=1.1e-41 Score=338.35 Aligned_cols=156 Identities=36% Similarity=0.492 Sum_probs=137.8
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||.|. +++..|||||++++||..|+..++ ...|.|+|||+|||||.|+|||.
T Consensus 92 YGQTGsGKTyTM~G~-----~~~~~GiiPraf~~LF~~I~~~~~--------~~~f~vrvS~lEiYnE~i~DLL~----- 153 (574)
T KOG4280|consen 92 YGQTGSGKTYTMIGP-----DPELRGLIPRAFEHLFRHIDERKE--------KTRFLVRVSYLEIYNESIRDLLS----- 153 (574)
T ss_pred eccCCCCCceEeeCC-----ChhhCCchhHHHHHHHHHHHhccc--------cceEEEEeehHHHHhHHHHHHhC-----
Confidence 999999999999996 378999999999999999998754 34799999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 154 -------------------------------------------------------------------------------- 153 (574)
T KOG4280|consen 154 -------------------------------------------------------------------------------- 153 (574)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+.. ...|.|+++++.||||+||+++.|.++++++.+|..|..+|++++|.||.+
T Consensus 154 -------------------~~~-------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~ 207 (574)
T KOG4280|consen 154 -------------------PVN-------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEE 207 (574)
T ss_pred -------------------ccC-------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcc
Confidence 221 367999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||||+|++... ..+.....+.++|+||||||||.
T Consensus 208 SsRSH~ift~~i~~~~~--~~~~~~~~~~~rlnlvDLagsEr 247 (574)
T KOG4280|consen 208 SSRSHAIFTIHIESSEK--SDGGLMSGRSSKLNLVDLAGSER 247 (574)
T ss_pred cccceEEEEEEEEeecc--cCCCccccccceeeeeeccchhh
Confidence 99999999999999332 22334456778999999999986
No 2
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.4e-40 Score=311.71 Aligned_cols=164 Identities=36% Similarity=0.465 Sum_probs=138.1
Q ss_pred CCCCccccccccccccCCC--CCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhh
Q psy15014 1 MLQTGSGKTYTMGTGFETD--VSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITC 78 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~--~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~ 78 (286)
||||||||||||+|+.... ....++|||||++++||..++...+.. .....|.|++||+|||||+|+|||.
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~----~~~~~~~v~~S~~EIyne~v~DLL~--- 153 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKR----GDGLKFLCKCSFLEIYNEQITDLLD--- 153 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhc----ccCceEEEEEEEEeecCCEeeeCCC---
Confidence 9999999999999964322 234678999999999999987654321 2356899999999999999977773
Q ss_pred ccccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhh
Q psy15014 79 VQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERD 158 (286)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (286)
T Consensus 154 -------------------------------------------------------------------------------- 153 (337)
T cd01373 154 -------------------------------------------------------------------------------- 153 (337)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCC
Q psy15014 159 KVLASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMN 238 (286)
Q Consensus 159 ~~~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N 238 (286)
+. ...++|++++.++++|+||+++.|.|++|++++|..|..+|++++|.+|
T Consensus 154 ---------------------~~--------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n 204 (337)
T cd01373 154 ---------------------PT--------SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMN 204 (337)
T ss_pred ---------------------CC--------CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCC
Confidence 21 3568999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 239 SQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 239 ~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
.+|||||+||+|+|.+.... ........++|+||||||||..
T Consensus 205 ~~SSRSH~i~~i~v~~~~~~---~~~~~~~~s~l~~VDLAGSEr~ 246 (337)
T cd01373 205 SESSRSHAVFTCTIESWEKK---ASSTNIRTSRLNLVDLAGSERQ 246 (337)
T ss_pred CCCCCccEEEEEEEEEeecC---CCCCcEEEEEEEEEECCCCCcc
Confidence 99999999999999986532 2222456789999999999964
No 3
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=8.3e-40 Score=310.55 Aligned_cols=154 Identities=30% Similarity=0.409 Sum_probs=137.4
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+| ..+++|||||++++||+.++.... ...|.|++||+|||||+|+|||+
T Consensus 94 yGqtGSGKTyTm~G------~~~~~Giipr~~~~LF~~i~~~~~--------~~~~~v~vS~~EIyne~v~DLL~----- 154 (338)
T cd01370 94 YGATGAGKTHTMLG------TDSDPGLMVLTMKDLFDKIEERKD--------DKEFEVSLSYLEIYNETIRDLLS----- 154 (338)
T ss_pred eCCCCCCCeEEEcC------CCCCCchHHHHHHHHHHhhhhccc--------CceEEEEEEEEEEECCEEEECCC-----
Confidence 99999999999999 457899999999999999987642 57899999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 155 -------------------------------------------------------------------------------- 154 (338)
T cd01370 155 -------------------------------------------------------------------------------- 154 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. ..+|+|+++++++++|+|++++.|.+++|++++|+.|..+|++++|.+|.+
T Consensus 155 -------------------~~--------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ 207 (338)
T cd01370 155 -------------------PS--------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANAT 207 (338)
T ss_pred -------------------CC--------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCc
Confidence 21 356899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||+|+|.+..... +.......++|+||||||||.
T Consensus 208 SSRSH~i~~i~i~~~~~~~--~~~~~~~~s~l~~VDLAGsEr 247 (338)
T cd01370 208 SSRSHAVLQITVRQKDRTA--SINQQVRIGKLSLIDLAGSER 247 (338)
T ss_pred cCcceEEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCcc
Confidence 9999999999999977532 224556788999999999995
No 4
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.3e-39 Score=308.35 Aligned_cols=157 Identities=31% Similarity=0.437 Sum_probs=135.0
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+| .+.++|||||++++||+.++. |.|+|||+|||||+|+|||..
T Consensus 95 YGqtGSGKTyTm~G------~~~~~Gli~r~~~~lF~~~~~--------------~~v~~S~~EIyne~v~DLL~~---- 150 (345)
T cd01368 95 YGVTNSGKTYTMQG------SPGDGGILPRSLDVIFNSIGG--------------YSVFVSYVEIYNNYIYDLLED---- 150 (345)
T ss_pred eCCCCCCCeEEecC------CCCCCchHHHHHHHHHHHHHh--------------eeEEEEEEEEeCCEeEeCCCC----
Confidence 99999999999999 558999999999999999743 899999999999999888842
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 151 -------------------------------------------------------------------------------- 150 (345)
T cd01368 151 -------------------------------------------------------------------------------- 150 (345)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
.... ..+...++|+++++++++|+||+++.|.|++|++++|+.|..+|++++|.+|.+
T Consensus 151 --------------------~~~~--~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~ 208 (345)
T cd01368 151 --------------------SPSS--TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRE 208 (345)
T ss_pred --------------------cccc--ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCC
Confidence 1000 011567999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCC---CCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVED---PEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~---~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+........ ..+....++|+||||||||..
T Consensus 209 SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~ 254 (345)
T cd01368 209 SSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERT 254 (345)
T ss_pred CCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEeccccccc
Confidence 9999999999999876533211 234567889999999999963
No 5
>KOG0245|consensus
Probab=100.00 E-value=2.1e-40 Score=338.94 Aligned_cols=161 Identities=31% Similarity=0.368 Sum_probs=141.9
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||+|||+|-. .+++.|||||.|++||.++...+.+ ...|.|.|||+|||||+|+|||+.
T Consensus 94 YGQTGSGKSYTMMG~~----~~~e~GIIPrlCEeLF~ri~~nq~~-------~~sy~VevSymEIYcErVrDLL~~---- 158 (1221)
T KOG0245|consen 94 YGQTGSGKSYTMMGFQ----EPDEPGIIPRLCEELFSRIADNQSQ-------QMSYSVEVSYMEIYCERVRDLLNA---- 158 (1221)
T ss_pred eccCCCCcceeeeccC----CCCCCCchhHHHHHHHHHHhhcccc-------cceEEEEEeehhHHHHHHHHHhhC----
Confidence 9999999999999932 4589999999999999999987643 689999999999999999888731
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 159 -------------------------------------------------------------------------------- 158 (1221)
T KOG0245|consen 159 -------------------------------------------------------------------------------- 158 (1221)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+.+ +.+|+|||+|-.|+||++|+.+.|+|..|+..+|..|++.|++++|.||+.
T Consensus 159 -------------------p~~-------kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdt 212 (1221)
T KOG0245|consen 159 -------------------PKS-------KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDT 212 (1221)
T ss_pred -------------------CCC-------CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccc
Confidence 111 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|.+.|+...... .-....+|+++||||||||+.
T Consensus 213 SSRSHaVFtIvftQk~~~~~~-~l~sek~SKIsLVDLAGSERa 254 (1221)
T KOG0245|consen 213 SSRSHAVFTIVFTQKKHDQDT-GLDSEKVSKISLVDLAGSERA 254 (1221)
T ss_pred cccceeEEEEEEEeeeccccC-CCcceeeeeeeEEeccCcccc
Confidence 999999999999998753222 233568899999999999974
No 6
>KOG0243|consensus
Probab=100.00 E-value=4.2e-40 Score=340.48 Aligned_cols=166 Identities=37% Similarity=0.458 Sum_probs=133.7
Q ss_pred CCCCccccccccccccC--CCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhh
Q psy15014 1 MLQTGSGKTYTMGTGFE--TDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITC 78 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~--~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~ 78 (286)
|||||+||||||.|+.. ....++.+|||||+|.+||..++.. +.+|.|+|||+|+|||.|+|||+.+-
T Consensus 135 YGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~----------~~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 135 YGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ----------GAEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred ecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc----------CCeEEEEEEehhhhhHHHHHhcCCcc
Confidence 99999999999999633 3446799999999999999999876 56999999999999999999995200
Q ss_pred ccccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhh
Q psy15014 79 VQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERD 158 (286)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (286)
+.+
T Consensus 205 ----------~~~------------------------------------------------------------------- 207 (1041)
T KOG0243|consen 205 ----------TSD------------------------------------------------------------------- 207 (1041)
T ss_pred ----------ccc-------------------------------------------------------------------
Confidence 000
Q ss_pred HHhhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCC
Q psy15014 159 KVLASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMN 238 (286)
Q Consensus 159 ~~~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N 238 (286)
-..+.... ..+ . +.+++|+|+||.++.|+++.|++++|.+|..+|++|+|.||
T Consensus 208 --------------~~~~~k~~----------~~~--~-~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N 260 (1041)
T KOG0243|consen 208 --------------KKLRIKDD----------STI--V-DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMN 260 (1041)
T ss_pred --------------cccccccC----------Ccc--c-CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhh
Confidence 00111111 111 1 67899999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 239 SQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 239 ~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
++|||||+||+|+|..+..... .+..+..++|+||||||||-
T Consensus 261 ~~SSRSHsIFsItvhike~t~~--geelvK~GKLNLVDLAGSEN 302 (1041)
T KOG0243|consen 261 DQSSRSHSIFSITVHIKENTPE--GEELVKIGKLNLVDLAGSEN 302 (1041)
T ss_pred hhccccceEEEEEEEEecCCCc--chhhHhhcccceeecccccc
Confidence 9999999999999998764221 22336677999999999983
No 7
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.6e-39 Score=302.05 Aligned_cols=146 Identities=32% Similarity=0.406 Sum_probs=132.7
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+| +.+++|||||++++||+.++.. ...|.|++||+|||||+|+|||.
T Consensus 91 yGqtGSGKTyTm~G------~~~~~Glipr~~~~lf~~~~~~----------~~~~~v~~S~~EIy~e~v~DLL~----- 149 (322)
T cd01367 91 YGQTGSGKTYTMLG------DENQEGLYALAARDIFRLLAQP----------NDDLGVTVSFFEIYGGKLFDLLN----- 149 (322)
T ss_pred ccCCCCCCceEecC------cCCcCccHHHHHHHHHHHHhcc----------ccccEEEEEEEeeecCchhhhcc-----
Confidence 99999999999999 5588999999999999999775 25899999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 150 -------------------------------------------------------------------------------- 149 (322)
T cd01367 150 -------------------------------------------------------------------------------- 149 (322)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+ ...++|++++.++++|+|++++.|.|++|++++|..|..+|.+++|.+|..
T Consensus 150 -------------------~---------~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ 201 (322)
T cd01367 150 -------------------D---------RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQ 201 (322)
T ss_pred -------------------C---------ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCC
Confidence 2 356899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+... ....++|+||||||||..
T Consensus 202 SSRSH~i~~i~v~~~~~--------~~~~s~l~~vDLAGsE~~ 236 (322)
T cd01367 202 SSRSHAILQIILKNKKL--------NKLLGKLSFIDLAGSERG 236 (322)
T ss_pred cccceEEEEEEEEEecC--------CeeEEEEEEeecCCcccc
Confidence 99999999999998653 446789999999999963
No 8
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.8e-38 Score=300.86 Aligned_cols=160 Identities=38% Similarity=0.461 Sum_probs=138.4
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+| ...+.|||||++++||+.++....+ ...|.|+|||+|||||+|+|||..
T Consensus 95 yGqtGSGKT~Tm~G------~~~~~Gli~r~~~~Lf~~~~~~~~~-------~~~~~v~~S~~EIy~e~v~DLL~~---- 157 (356)
T cd01365 95 YGQTGSGKSYTMMG------YKEEKGIIPRLCEELFQRIESKKEQ-------NLSYEVEVSYMEIYNEKVRDLLNP---- 157 (356)
T ss_pred ecCCCCCCeEEecC------CCCCCchHHHHHHHHHHHHhhcccc-------CceEEEEEEEEEEECCeeeeCCCC----
Confidence 99999999999999 4568999999999999999876431 568999999999999999888732
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 158 -------------------------------------------------------------------------------- 157 (356)
T cd01365 158 -------------------------------------------------------------------------------- 157 (356)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
... ....++|++++.++++|+|++++.|.|++|++++|+.|.++|.+++|.+|..
T Consensus 158 --------------------~~~-----~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ 212 (356)
T cd01365 158 --------------------KKK-----NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDT 212 (356)
T ss_pred --------------------Ccc-----CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCC
Confidence 110 1467899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+...... ........++|+||||||||..
T Consensus 213 SSRSH~i~~l~v~~~~~~~~-~~~~~~~~s~l~~VDLAGsEr~ 254 (356)
T cd01365 213 SSRSHAVFTIVLTQKKLDKE-TDLTTEKVSKISLVDLAGSERA 254 (356)
T ss_pred cCCceEEEEEEEEEEecccC-CCCCceEEEEEEeeeccccccc
Confidence 99999999999998765321 2344567889999999999964
No 9
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=7e-38 Score=296.84 Aligned_cols=162 Identities=36% Similarity=0.437 Sum_probs=138.5
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+|+.+ ...++|||||++++||+.++... ...|.|++||+|||||+|+|||..
T Consensus 87 yG~tgSGKTyTm~G~~~---~~~~~Glipr~~~~lf~~~~~~~---------~~~~~v~~S~~Eiy~e~v~DLL~~---- 150 (334)
T cd01375 87 YGQTGAGKTFTMTGGTE---SYKDRGLIPRALEQVFREVAMRA---------TKTYTVHVSYLEIYNEQLYDLLGD---- 150 (334)
T ss_pred ecCCCCCCeEEccCCCC---cccCCchHHHHHHHHHHHHHhcc---------CcceEEEEEEEEEECCEeecCCCC----
Confidence 99999999999999643 34688999999999999997753 568999999999999999999842
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd01375 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
.... ......++|++++.++++|+|++++.|.+++|++++|..|..+|++++|.+|+.
T Consensus 151 --------------------~~~~--~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~ 208 (334)
T cd01375 151 --------------------TPEA--LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQA 208 (334)
T ss_pred --------------------Cccc--cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCC
Confidence 0000 001467899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+.... ........++|+||||||||..
T Consensus 209 sSRSH~i~~l~v~~~~~~---~~~~~~~~s~l~~VDLAGsEr~ 248 (334)
T cd01375 209 SSRSHCIFTIHLESRSRE---AGSEVVRLSKLNLVDLAGSERV 248 (334)
T ss_pred cCcCeEEEEEEEEEEecC---CCCCceEEEEEEEEECCCCCcc
Confidence 999999999999997542 2344567889999999999863
No 10
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=329.12 Aligned_cols=167 Identities=29% Similarity=0.433 Sum_probs=138.4
Q ss_pred CCCCccccccccccccCC----CCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchh
Q psy15014 1 MLQTGSGKTYTMGTGFET----DVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHI 76 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~----~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~ 76 (286)
||||||||||||+|+..+ .....+.|||||++++||..+...... ..+....|.|+|||+|||||+|+|||.
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k---~~d~~~~y~V~vSyLEIYNEkI~DLLs- 247 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIK---HADRQLKYQCRCSFLEIYNEQITDLLD- 247 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhh---ccccccceEEEEEEEeeecCcceeccc-
Confidence 999999999999996432 123578999999999999999764321 112356799999999999999977773
Q ss_pred hhccccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhh
Q psy15014 77 TCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156 (286)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (286)
T Consensus 248 -------------------------------------------------------------------------------- 247 (1320)
T PLN03188 248 -------------------------------------------------------------------------------- 247 (1320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHhhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCC
Q psy15014 157 RDKVLASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQ 236 (286)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~ 236 (286)
+. ..+|+|++++.+++||+||+++.|.+++|++++|..|..+|++++|.
T Consensus 248 -----------------------p~--------~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~ 296 (1320)
T PLN03188 248 -----------------------PS--------QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATS 296 (1320)
T ss_pred -----------------------cc--------cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCC
Confidence 21 45689999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 237 MNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 237 ~N~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
+|..|||||+||+|.|.+...... +.......++|+||||||||+.
T Consensus 297 mN~~SSRSHaIFtI~Ves~~k~~~-dg~ss~r~SkLnLVDLAGSER~ 342 (1320)
T PLN03188 297 INAESSRSHSVFTCVVESRCKSVA-DGLSSFKTSRINLVDLAGSERQ 342 (1320)
T ss_pred CCCccCCCceeEEEEEEEeecccC-CCCcceEEEEEEEEECCCchhc
Confidence 999999999999999998653221 1223456789999999999964
No 11
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.4e-37 Score=294.71 Aligned_cols=165 Identities=48% Similarity=0.635 Sum_probs=141.9
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+|+........++|||||++++||+.++.... ..+|.|.|||+|||||+|+|||..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~--------~~~~~v~vS~~EIy~e~v~DLL~~---- 147 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKD--------EPDFQLKVSFLELYNEEVRDLLSP---- 147 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccc--------cceEEEEEEEEEeECCeeecCCCC----
Confidence 99999999999999654334568999999999999999987642 468999999999999999888842
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 148 -------------------------------------------------------------------------------- 147 (341)
T cd01372 148 -------------------------------------------------------------------------------- 147 (341)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
... ....++|++++.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..
T Consensus 148 --------------------~~~-----~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ 202 (341)
T cd01372 148 --------------------STS-----EKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQ 202 (341)
T ss_pred --------------------ccc-----CCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCc
Confidence 100 0467899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccC-----CCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVE-----DPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~-----~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||+|+|.+....... ........++|+||||||||.
T Consensus 203 sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~ 249 (341)
T cd01372 203 SSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSER 249 (341)
T ss_pred cCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcc
Confidence 999999999999998764221 133456788999999999996
No 12
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.5e-37 Score=291.23 Aligned_cols=154 Identities=32% Similarity=0.501 Sum_probs=136.7
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+| ...++|||||++++||..++... ...|.|+|||+|||||+|+|||.
T Consensus 80 yG~tgSGKT~T~~G------~~~~~Gli~r~~~~lf~~~~~~~---------~~~~~v~~S~~Eiy~e~v~DLL~----- 139 (321)
T cd01374 80 YGQTSSGKTFTMSG------DEQEPGIIPLAVRDIFQRIQDTP---------DREFLLRVSYLEIYNEKIKDLLS----- 139 (321)
T ss_pred ecCCCCCCceeccC------CCCCCchHHHHHHHHHHHHhccc---------CceEEEEEEEEEEEcCEeEEccC-----
Confidence 99999999999999 45888999999999999997653 46899999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 140 -------------------------------------------------------------------------------- 139 (321)
T cd01374 140 -------------------------------------------------------------------------------- 139 (321)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. ...+++++++.++++|+|++++.|.|++|++++|+.|..+|++++|.+|.+
T Consensus 140 -------------------~~--------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 192 (321)
T cd01374 140 -------------------PS--------PQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNER 192 (321)
T ss_pred -------------------CC--------CCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCc
Confidence 22 356899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+..... ...+....++|+||||||||..
T Consensus 193 ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~l~~vDLAGsE~~ 233 (321)
T cd01374 193 SSRSHTIFQLTIESRERGD--SESGTVRVSTLNLIDLAGSERA 233 (321)
T ss_pred cccccEEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCCcc
Confidence 9999999999999976532 1345667899999999999964
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.5e-37 Score=291.83 Aligned_cols=157 Identities=34% Similarity=0.478 Sum_probs=136.8
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+|..+ ...++|||||++++||+.++... ...|.|.|||+|||||+|+|||.
T Consensus 88 yG~tgSGKTyTm~G~~~---~~~~~Glipr~~~~Lf~~~~~~~---------~~~~~v~~S~~Eiy~e~v~DLL~----- 150 (333)
T cd01371 88 YGQTGTGKTFTMEGVRE---PPELRGIIPNSFAHIFGHIAKAE---------NVQFLVRVSYLEIYNEEVRDLLG----- 150 (333)
T ss_pred cCCCCCCCcEeecCCCC---cccccchHHHHHHHHHHHHhhcc---------CccEEEEEEEEEeeCCeeeeCCC-----
Confidence 99999999999999532 34689999999999999987653 36899999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 151 -------------------------------------------------------------------------------- 150 (333)
T cd01371 151 -------------------------------------------------------------------------------- 150 (333)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+.. ...+++++++.++++|+||+++.|.+++|++.+|..|..+|++++|.+|.+
T Consensus 151 -------------------~~~-------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ 204 (333)
T cd01371 151 -------------------KDQ-------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNED 204 (333)
T ss_pred -------------------CCC-------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCC
Confidence 111 346889999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||+|+|++..... ........++|+||||||||.
T Consensus 205 ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~L~~VDLAGsEr 244 (333)
T cd01371 205 SSRSHSIFTITIECSEKGE--DGENHIRVGKLNLVDLAGSER 244 (333)
T ss_pred CCCCcEEEEEEEEEEeccC--CCCCcEEEEEEEEEECCCCCc
Confidence 9999999999999876532 234456788999999999986
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.8e-37 Score=290.91 Aligned_cols=147 Identities=33% Similarity=0.370 Sum_probs=132.2
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+| ...++|||||++++||+.++.. ...+.|++||+|||||+|+|||.
T Consensus 87 yG~tgSGKTyTm~G------~~~~~Glipr~~~~Lf~~~~~~----------~~~~~v~~S~~EIy~e~v~DLL~----- 145 (319)
T cd01376 87 YGSTGAGKTHTMLG------DPNEPGLIPRTLSDLLRMGRKQ----------AWTGAFSMSYYEIYNEKVYDLLE----- 145 (319)
T ss_pred ECCCCCCCcEEEeC------CcCccchHHHHHHHHHHHHhhc----------cccceEEEEEEEEECCEeeEccC-----
Confidence 99999999999999 4568999999999999988664 36899999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 146 -------------------------------------------------------------------------------- 145 (319)
T cd01376 146 -------------------------------------------------------------------------------- 145 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. ...++|+++++++++|+|+++++|.+++|++++|..|.++|.+++|.+|..
T Consensus 146 -------------------~~--------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 198 (319)
T cd01376 146 -------------------PA--------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDN 198 (319)
T ss_pred -------------------CC--------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCc
Confidence 22 356889999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||+|+|.+... .....++|+||||||||.
T Consensus 199 SSRSH~i~~i~v~~~~~-------~~~~~s~l~~VDLAGsE~ 233 (319)
T cd01376 199 SSRSHAVLRIKVTQPAS-------NIQLEGKLNLIDLAGSED 233 (319)
T ss_pred cCCCeEEEEEEEEEECC-------CceEEEEEEEEECCCCCc
Confidence 99999999999998643 236788999999999995
No 15
>KOG0242|consensus
Probab=100.00 E-value=2.7e-38 Score=322.54 Aligned_cols=150 Identities=37% Similarity=0.521 Sum_probs=135.7
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||.| ...++||||+++.+||..|.... ...|.|.+||+|||||.|+|||.
T Consensus 93 YG~TgSGKTyTM~G------~~~~PGii~la~~dif~~I~~~~---------~r~f~v~vSYlEIYNE~I~DLL~----- 152 (675)
T KOG0242|consen 93 YGQTGSGKTYTMSG------SEDDPGIIPLAMKDIFEKIDKSG---------EREFSVRVSYLEIYNERIRDLLN----- 152 (675)
T ss_pred ecCCCCCCceEEec------cCCCCCeeehHHHHHHHHHHhcC---------CceeEEEEEEEEEeccccccccC-----
Confidence 99999999999999 77889999999999999998853 56899999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 153 -------------------------------------------------------------------------------- 152 (675)
T KOG0242|consen 153 -------------------------------------------------------------------------------- 152 (675)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. ...|+|+||+.++++|.||+++.|.|+++++.+|..|..+|+++.|.+|..
T Consensus 153 -------------------~~--------~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~ 205 (675)
T KOG0242|consen 153 -------------------PD--------GGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQ 205 (675)
T ss_pred -------------------CC--------CCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccc
Confidence 22 345999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|.|.+...... . ..++|+||||||||..
T Consensus 206 SSRSHaIl~i~i~s~~~~~~-----~-~~s~L~lIDLAGSERa 242 (675)
T KOG0242|consen 206 SSRSHAILRITVESRGREAS-----S-RVSKLNLIDLAGSERA 242 (675)
T ss_pred cchhhheeeEEEEecccccc-----c-hhheehhhhhhhhhhh
Confidence 99999999999999775332 1 6779999999999964
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.4e-37 Score=290.54 Aligned_cols=154 Identities=38% Similarity=0.591 Sum_probs=136.2
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+|+.. ..++.|||||++++||+.+..... ..+|.|++||+|||||+++|||+
T Consensus 83 yG~tgSGKT~Tm~G~~~---~~~~~Giipr~~~~Lf~~~~~~~~--------~~~~~v~~S~~EIy~e~v~DLL~----- 146 (325)
T cd01369 83 YGQTGSGKTYTMEGPPG---DPELKGIIPRIVHDIFEHISSMDE--------NLEFHVKVSYLEIYMEKIRDLLD----- 146 (325)
T ss_pred eCCCCCCceEEecCCCC---ccccCChHHHHHHHHHHHHhhccC--------CceEEEEEEEEEEECCChhhccc-----
Confidence 99999999999999543 245899999999999999987632 56899999999999999977773
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 147 -------------------------------------------------------------------------------- 146 (325)
T cd01369 147 -------------------------------------------------------------------------------- 146 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. ...+++++++.++++|+|++++.|.|++|++++|..|..+|++++|.+|..
T Consensus 147 -------------------~~--------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ 199 (325)
T cd01369 147 -------------------VS--------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEE 199 (325)
T ss_pred -------------------Cc--------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCc
Confidence 21 456889999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||+|+|.+... ..+....++|+||||||||.
T Consensus 200 ssRSH~i~~i~v~~~~~-----~~~~~~~s~l~~VDLAGsE~ 236 (325)
T cd01369 200 SSRSHSIFLITLKQENV-----ETGSKKRGKLFLVDLAGSEK 236 (325)
T ss_pred cccccEEEEEEEEEEec-----CCCCEEEEEEEEEECCCCCc
Confidence 99999999999998764 23446788999999999996
No 17
>KOG0240|consensus
Probab=100.00 E-value=5.8e-38 Score=307.04 Aligned_cols=154 Identities=36% Similarity=0.546 Sum_probs=138.7
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||.|... ++...|||||++.+||..|..... +..|.|++||||||+|+|+|||+
T Consensus 89 YGqT~sGKTytm~G~~~---d~~~~GIipRi~~diF~~Iys~~~--------n~efhVkVsy~EIYmEKi~DLL~----- 152 (607)
T KOG0240|consen 89 YGQTGSGKTYTMEGIGH---DPEEMGIIPRILNDIFDHIYSMEE--------NLEFHVKVSYFEIYMEKIRDLLD----- 152 (607)
T ss_pred ecCCCCCcceeecccCC---ChhhcCcHHHHHHHHHHHHhcCcc--------cceEEEEEEeehhhhhHHHHHhC-----
Confidence 99999999999998533 456779999999999999998743 67999999999999999977763
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 153 -------------------------------------------------------------------------------- 152 (607)
T KOG0240|consen 153 -------------------------------------------------------------------------------- 152 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. +.+|.|++|.+..+||+|++++.|.+.+++++.|..|..+|.++.|.||.+
T Consensus 153 -------------------~~--------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~ 205 (607)
T KOG0240|consen 153 -------------------PE--------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEH 205 (607)
T ss_pred -------------------cc--------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhcccccc
Confidence 22 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||+|+|+|... .......++|+||||||||.
T Consensus 206 sSRSHsIF~i~VkQ~n~-----e~~~~~~gkLyLVDLaGSEk 242 (607)
T KOG0240|consen 206 SSRSHSIFLIHVKQENV-----EDKRKLSGKLYLVDLAGSEK 242 (607)
T ss_pred ccccceEEEEEEEeccc-----cchhhccccEEEEEcccccc
Confidence 99999999999999764 44556778999999999996
No 18
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=8.9e-37 Score=290.76 Aligned_cols=161 Identities=35% Similarity=0.470 Sum_probs=136.9
Q ss_pred CCCCccccccccccccCCC-----CCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccch
Q psy15014 1 MLQTGSGKTYTMGTGFETD-----VSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEH 75 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~-----~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~ 75 (286)
||||||||||||+|+.... ...+.+|||||++.+||+.++.. ...|.|+|||+|||||+|+|||+
T Consensus 88 yG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~----------~~~~~v~~S~~EIy~e~v~DLL~ 157 (352)
T cd01364 88 YGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ----------NTEYSVKVSYLELYNEELFDLLS 157 (352)
T ss_pred CCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc----------cceeEEEEEEEEeeCCeeeeCCC
Confidence 9999999999999965432 12567999999999999999875 46899999999999999988874
Q ss_pred hhhccccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhh
Q psy15014 76 ITCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEE 155 (286)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 155 (286)
.
T Consensus 158 ~------------------------------------------------------------------------------- 158 (352)
T cd01364 158 S------------------------------------------------------------------------------- 158 (352)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred hhhHHhhhcccCCCccccccccCCCCCccccccCCCCceEEEc--CCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcc
Q psy15014 156 ERDKVLASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHED--SGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTA 233 (286)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~--~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~ 233 (286)
.. .....++|+++ ..++++|+|++++.|.|++|++++|+.|..+|+++
T Consensus 159 -------------------------~~-----~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~ 208 (352)
T cd01364 159 -------------------------ES-----DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTA 208 (352)
T ss_pred -------------------------cc-----ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 11 01567999999 58999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 234 STQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 234 sT~~N~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
+|.+|..|||||+||+|+|.+...... .......++|+||||||||.
T Consensus 209 ~t~~n~~sSRSH~i~~i~i~~~~~~~~--~~~~~~~s~l~~VDLAGsE~ 255 (352)
T cd01364 209 ATLMNDQSSRSHSIFSITIHIKETTIS--GEELVKIGKLNLVDLAGSEN 255 (352)
T ss_pred cCcCCCCCCCCceEEEEEEEEeccCCC--CCccEEEEEEEEEECCCccc
Confidence 999999999999999999998764221 22334678999999999995
No 19
>KOG0247|consensus
Probab=100.00 E-value=7.4e-38 Score=312.87 Aligned_cols=87 Identities=32% Similarity=0.437 Sum_probs=80.0
Q ss_pred ceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCCCCCCceeEEEEEEEeeecccCCCCCceeEEEE
Q psy15014 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLL 272 (286)
Q Consensus 193 l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L 272 (286)
..+++|.++.+||+|++||+|.+.+||+++|+.|.++|++++|.+|+.|||||+||+|+|.+.... .....+..|.|
T Consensus 257 ~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~---~~s~~i~vSql 333 (809)
T KOG0247|consen 257 KLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS---QDSNQITVSQL 333 (809)
T ss_pred hhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc---cccCceeEEee
Confidence 557899999999999999999999999999999999999999999999999999999999996642 24566889999
Q ss_pred EEEeCCCCcC
Q psy15014 273 FLTFPTGSAS 282 (286)
Q Consensus 273 ~lVDLAGS~~ 282 (286)
.||||||||+
T Consensus 334 sLvDLAGSER 343 (809)
T KOG0247|consen 334 SLVDLAGSER 343 (809)
T ss_pred eeeecccchh
Confidence 9999999997
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.2e-36 Score=284.24 Aligned_cols=156 Identities=39% Similarity=0.495 Sum_probs=138.6
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||+|||||||||+| ..+++|||||++++||+.++...++ ...|.|++||+|||||+|+|||..
T Consensus 84 yG~tgSGKT~tl~G------~~~~~Gli~r~~~~lf~~~~~~~~~-------~~~~~v~~S~~EIy~e~v~DLL~~---- 146 (329)
T cd01366 84 YGQTGSGKTYTMEG------PPENPGIIPRALEQLFNTAEELKEK-------GWSYTITASMLEIYNETIRDLLAT---- 146 (329)
T ss_pred eCCCCCCCcEEecC------CCCCCCcHHHHHHHHHHHHHhhhcc-------CceEEEEEEEEEEECCEeEECCCC----
Confidence 89999999999999 5588999999999999999886532 578999999999999999888742
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 147 -------------------------------------------------------------------------------- 146 (329)
T cd01366 147 -------------------------------------------------------------------------------- 146 (329)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
.. .....++|+++++++++|+|++++.|.|++|++++|..|..+|.+++|.+|..
T Consensus 147 --------------------~~-----~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 201 (329)
T cd01366 147 --------------------KP-----APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEH 201 (329)
T ss_pred --------------------Cc-----CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCC
Confidence 10 01567999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+.... .+....++|+||||||||..
T Consensus 202 sSRsH~i~~i~v~~~~~~-----~~~~~~s~l~~VDLaGsE~~ 239 (329)
T cd01366 202 SSRSHAVFQLKIRGTNLQ-----TGEQTRGKLNLVDLAGSERL 239 (329)
T ss_pred CCCccEEEEEEEEEEcCC-----CCcEEEEEEEEEECCCCccc
Confidence 999999999999987642 45667889999999999963
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=4.8e-36 Score=282.86 Aligned_cols=163 Identities=40% Similarity=0.560 Sum_probs=137.3
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||+|||||||||+|+ ....++|||||++++||+.++..... ....+.|+|||+|||||+|+|||..
T Consensus 81 yG~tgSGKT~Tm~G~----~~~~~~Gli~~~~~~lf~~~~~~~~~------~~~~~~v~vS~~EIy~e~v~DLL~~---- 146 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS----NDPSEPGLIPRALRDLFSQIEERKEK------SGYEFSVSVSYLEIYNEKVYDLLSP---- 146 (335)
T ss_dssp EESTTSSHHHHHTBS----TSTTTBSHHHHHHHHHHHHHHHHTTT------STEEEEEEEEEEEEETTEEEETTST----
T ss_pred ecccccccccccccc----ccccccchhhhHHHHHhhhhcccccc------ccccccccccchhhhhhhhhhhcCc----
Confidence 899999999999994 13789999999999999999886431 0258999999999999999888742
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 147 -------------------------------------------------------------------------------- 146 (335)
T PF00225_consen 147 -------------------------------------------------------------------------------- 146 (335)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCc-EEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHS-IYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNS 239 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~-v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~ 239 (286)
... .....++|++++..+ ++|+|++++.|.+++|++++|..|..+|+++.|.+|.
T Consensus 147 --------------------~~~----~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~ 202 (335)
T PF00225_consen 147 --------------------NNS----KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNA 202 (335)
T ss_dssp --------------------TSS----STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTH
T ss_pred --------------------ccc----ccccccceeeccccccceeeccccccccccccccccccchhhccccccccccc
Confidence 110 014579999999866 9999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 240 QSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 240 ~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
.|||||+||+|+|.+......... .....++|.||||||||.
T Consensus 203 ~sSRSH~i~~i~v~~~~~~~~~~~-~~~~~s~l~~vDLaGsE~ 244 (335)
T PF00225_consen 203 RSSRSHAIFTIHVEQKDRDPSDDE-ESVKHSRLTFVDLAGSER 244 (335)
T ss_dssp HGGGSEEEEEEEEEEEETTTTTEE-EEEEEEEEEEEEEEESTG
T ss_pred cccccccccccccccccccccccc-cceeecceeeeecccccc
Confidence 999999999999999875322111 125788999999999996
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=9.8e-35 Score=274.36 Aligned_cols=154 Identities=40% Similarity=0.561 Sum_probs=136.5
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||+|||||||||+| +.+++|||||++++||+.+....+ ...+.|++||+|||||+|+|||.
T Consensus 86 yG~tgSGKT~tl~G------~~~~~Gli~~~~~~Lf~~~~~~~~--------~~~~~v~~S~~ei~~e~v~DLL~----- 146 (335)
T smart00129 86 YGQTGSGKTYTMSG------TPDSPGIIPRALKDLFEKIDKLEE--------GWQFQVKVSYLEIYNEKIRDLLN----- 146 (335)
T ss_pred eCCCCCCCceEecC------CCCCCCHHHHHHHHHHHHhhhccc--------CceEEEEEEEEEEECCEEEECcC-----
Confidence 89999999999999 457889999999999999977542 56899999999999999977763
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 147 -------------------------------------------------------------------------------- 146 (335)
T smart00129 147 -------------------------------------------------------------------------------- 146 (335)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. ...++|++++.++++++|++++.|.|++|++++|..|..+|.+++|.+|..
T Consensus 147 -------------------~~--------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 199 (335)
T smart00129 147 -------------------PS--------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEE 199 (335)
T ss_pred -------------------CC--------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCC
Confidence 22 456899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+... +...+....++|.||||||||..
T Consensus 200 ssRsH~i~~l~v~~~~~---~~~~~~~~~s~l~~VDLaGse~~ 239 (335)
T smart00129 200 SSRSHAVFTITVESKIK---NSSSGSGKASKLNLVDLAGSERA 239 (335)
T ss_pred CCcceEEEEEEEEEEec---CCCCCCEEEEEEEEEECCCCCcc
Confidence 99999999999998743 23445567889999999999864
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.1e-34 Score=272.79 Aligned_cols=157 Identities=41% Similarity=0.524 Sum_probs=137.3
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||+|||||||||+| +..++|||||++++||+.++.... ....+.|.+||+|||||+|+|||..
T Consensus 85 yG~tgSGKT~tl~G------~~~~~Gli~~~~~~Lf~~~~~~~~-------~~~~~~v~~S~~Ei~~e~v~DLL~~---- 147 (328)
T cd00106 85 YGQTGSGKTYTMFG------SPKDPGIIPRALEDLFNLIDERKE-------KNKSFSVSVSYLEIYNEKVYDLLSP---- 147 (328)
T ss_pred ecCCCCCCeEEecC------CCCCCchHHHHHHHHHHHHhhccc-------cCceEEEEEEEEEEECCEeEECCCC----
Confidence 89999999999999 568899999999999999987632 1468999999999999999888742
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 148 -------------------------------------------------------------------------------- 147 (328)
T cd00106 148 -------------------------------------------------------------------------------- 147 (328)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
.. ....++|++++.++++|+|++++.|.|++|++++|..|..+|+.++|.+|..
T Consensus 148 --------------------~~------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 201 (328)
T cd00106 148 --------------------EP------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNER 201 (328)
T ss_pred --------------------CC------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCC
Confidence 11 1567899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|+|.+..... .......++|.||||||||..
T Consensus 202 ssRSH~i~~i~v~~~~~~~---~~~~~~~s~l~~VDLaGse~~ 241 (328)
T cd00106 202 SSRSHAIFTIHVEQRNTTN---DGRSIKSSKLNLVDLAGSERA 241 (328)
T ss_pred cCcCcEEEEEEEEEEecCC---CCccEEEEEEEEEECCCCCcc
Confidence 9999999999999976522 111367889999999999964
No 24
>KOG0239|consensus
Probab=100.00 E-value=2.7e-35 Score=299.92 Aligned_cols=154 Identities=33% Similarity=0.377 Sum_probs=138.9
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||.|+ +++++|||||++.+||..++.... .+.|.+.++|+|||||.|+|||..
T Consensus 399 YGQTGSGKTyTM~G~-----~~~~~Giipral~~lF~~~~~~~~--------g~~y~~~~s~~EIYNe~i~DlL~~---- 461 (670)
T KOG0239|consen 399 YGQTGSGKTYTMSGP-----TPEDPGIIPRALEKLFRTITSLKS--------GWKYDKTVSMLEIYNEAIRDLLSD---- 461 (670)
T ss_pred ecccCCCccccccCC-----CcccCCccHHHHHHHHHHHHhhcc--------CceEEeeeehhHHHHHHHHHhccc----
Confidence 999999999999985 578999999999999999998753 789999999999999999888842
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 462 -------------------------------------------------------------------------------- 461 (670)
T KOG0239|consen 462 -------------------------------------------------------------------------------- 461 (670)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
.. ....+.|++++++..+|.+++.+.|.+.+|+..+|+.|..+|++++|.+|.+
T Consensus 462 --------------------~~------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~ 515 (670)
T KOG0239|consen 462 --------------------ES------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNER 515 (670)
T ss_pred --------------------cc------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchh
Confidence 11 0567899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
|||||+||+|+|.... ...+....+.|+||||||||+
T Consensus 516 SSRSH~v~~v~v~g~~-----~~t~~~~~g~l~LVDLAGSER 552 (670)
T KOG0239|consen 516 SSRSHLVFRVRIRGIN-----ELTGIRVTGVLNLVDLAGSER 552 (670)
T ss_pred hhccceEEEEEEeccc-----cCcccccccceeEeecccCcc
Confidence 9999999999999864 355666777999999999997
No 25
>KOG0246|consensus
Probab=100.00 E-value=1.5e-34 Score=282.97 Aligned_cols=155 Identities=28% Similarity=0.387 Sum_probs=139.3
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||+|++.+.......||.-.+.+++|..+....-+ ..++.|+++|||||+.++||||..
T Consensus 298 YGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~-------~~~l~v~~tFFEIYgGKvfDLL~~---- 366 (676)
T KOG0246|consen 298 YGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYR-------KLDLKVYVTFFEIYGGKVYDLLND---- 366 (676)
T ss_pred eccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchh-------hcceEEEEEEEEEeCcchhhhhcc----
Confidence 999999999999999988878889999999999999999874322 568999999999999999888731
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 367 -------------------------------------------------------------------------------- 366 (676)
T KOG0246|consen 367 -------------------------------------------------------------------------------- 366 (676)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+.+|.+.||.+.+|.|.||++..|.+.+|++++|..|...|+++.|..|++
T Consensus 367 -----------------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~ 417 (676)
T KOG0246|consen 367 -----------------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSN 417 (676)
T ss_pred -----------------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccc
Confidence 688999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
||||||||+|-|.... +.-..+++.||||||+|+.
T Consensus 418 SSRSHAvfQIilr~~~--------~~k~hGKfSlIDLAGnERG 452 (676)
T KOG0246|consen 418 SSRSHAVFQIILRKHG--------EFKLHGKFSLIDLAGNERG 452 (676)
T ss_pred ccccceeEeeeeecCC--------cceeEeEEEEEEccCCccC
Confidence 9999999999998632 1234569999999999974
No 26
>KOG0241|consensus
Probab=100.00 E-value=1.4e-33 Score=286.07 Aligned_cols=159 Identities=35% Similarity=0.440 Sum_probs=140.3
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||.| ..+++|||||.+..||.+|.... .+...|.|.+||+|||||+++|||
T Consensus 100 YGQtGsGKsYsmmG------t~~QpGiIPrlc~~lFe~I~k~~-------n~~~tfkVeVSymEIynEkv~DLL------ 160 (1714)
T KOG0241|consen 100 YGQTGSGKSYSMMG------TAEQPGIIPRLCESLFERIDKES-------NPSQTFKVEVSYMEIYNEKVRDLL------ 160 (1714)
T ss_pred ecccCCCceeEeec------cCCCCCchhHHHHHHHHHHHhcc-------CCCceEEEEEEHHHHhhcchhhhh------
Confidence 99999999999999 78999999999999999998864 457899999999999999996666
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 161 -------------------------------------------------------------------------------- 160 (1714)
T KOG0241|consen 161 -------------------------------------------------------------------------------- 160 (1714)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+|... ...|+++++.-.|.||.||.+..|.|++|+-.+|..|.+.|+++.|.||..
T Consensus 161 ------------------dPk~s------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~E 216 (1714)
T KOG0241|consen 161 ------------------DPKGS------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEE 216 (1714)
T ss_pred ------------------CCCCC------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeeccccc
Confidence 33322 567999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||.|.|.|.-......-. ....++|.||||||||..
T Consensus 217 ssrsHaVFslvvtQ~l~D~ktg~S-geKvsklslVDLAgsera 258 (1714)
T KOG0241|consen 217 SSRSHAVFSLVVTQTLYDLKTGHS-GEKVSKLSLVDLAGSERA 258 (1714)
T ss_pred ccccceeEEEEEeeEEeccccCcc-hhheeeeeEEEecccccc
Confidence 999999999999997653333322 236789999999999864
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.96 E-value=7.7e-30 Score=257.06 Aligned_cols=152 Identities=39% Similarity=0.562 Sum_probs=133.5
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||.| ..++.||||+++.+||+.+..... ..++.|.+||+|||||+++|||.
T Consensus 96 yGqTgsgKtyt~~G------~~~~~Gii~~~l~~lf~~l~~~~~--------~~~~~v~is~lEiYnEk~~DLl~----- 156 (568)
T COG5059 96 YGQTGSGKTYTMSG------TEEEPGIIPLSLKELFSKLEDLSM--------TKDFAVSISYLEIYNEKIYDLLS----- 156 (568)
T ss_pred EcccCCCceeEeec------CccccchHHHHHHHHHHHHHhccc--------CcceeeEeehhHHHhhHHHhhcc-----
Confidence 99999999999999 568999999999999999988743 46899999999999999988873
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 157 -------------------------------------------------------------------------------- 156 (568)
T COG5059 157 -------------------------------------------------------------------------------- 156 (568)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+. ...+.++++...+|+|.|++++.|.+.+|++.+|+.|..+|+++.|.+|+.
T Consensus 157 -------------------~~--------~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ 209 (568)
T COG5059 157 -------------------PN--------EESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDE 209 (568)
T ss_pred -------------------Cc--------cccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccc
Confidence 11 111668899999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||+|.+.+..... +....++|+||||||||..
T Consensus 210 ssRshsi~~i~~~~~~~~~-----~~~~~~~l~lvDLagSE~~ 247 (568)
T COG5059 210 SSRSHSIFQIELASKNKVS-----GTSETSKLSLVDLAGSERA 247 (568)
T ss_pred cccceEEEEEEEEEeccCc-----cceecceEEEEeecccccc
Confidence 9999999999999986432 3333468999999999974
No 28
>KOG0244|consensus
Probab=99.95 E-value=8.4e-31 Score=268.20 Aligned_cols=157 Identities=41% Similarity=0.532 Sum_probs=132.7
Q ss_pred CCCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccccccchhhhcc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i~DLL~~~~~~ 80 (286)
||||||||||||++.+....+ +.|||||++..||.++.... ...|.|.++|+|||+|.|+||+.
T Consensus 72 ygQtgsgkTytmgt~~~~~~~--~~Gvipr~v~~~f~~i~~~~---------~~~f~i~vs~vely~e~v~dl~~----- 135 (913)
T KOG0244|consen 72 YGQTGSGKTYTMGTNDAPAQD--TVGVIPRAVSTLFTRIGKTE---------SFVFRITVSFVELYNEEVLDLLK----- 135 (913)
T ss_pred ecccCCCceeecccccccccc--cCCcCcchHHHHHHHHHhhh---------ccceeeeeeeeeccchhhhhhcC-----
Confidence 999999999999875443322 27999999999999999875 36799999999999999988872
Q ss_pred ccccccCCCCCCCccccccchhhhhHhhhcchhhhHHHHHHHHHHHhhhhhccccccchhhHHHHHHHhhhchhhhhhHH
Q psy15014 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160 (286)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T Consensus 136 -------------------------------------------------------------------------------- 135 (913)
T KOG0244|consen 136 -------------------------------------------------------------------------------- 135 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCCCCCC
Q psy15014 161 LASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQ 240 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~~N~~ 240 (286)
+... ..++++++ +++++.+.||+++.|.+..+++..|..|...|++++|.||.+
T Consensus 136 -------------------~~~~------~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~q 189 (913)
T KOG0244|consen 136 -------------------PSRL------KANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQ 189 (913)
T ss_pred -------------------hhhh------hhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchh
Confidence 1111 44578888 889999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 241 SSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 241 SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
|||||+||||.+++... ........++|+||||||||..
T Consensus 190 ssRshAifti~lkq~kk----~~~~s~~~sKlhlVDLAGSER~ 228 (913)
T KOG0244|consen 190 SSRSHAIFTITLKQRKK----LSKRSSFCSKLHLVDLAGSERV 228 (913)
T ss_pred hhhhhHHHHHHHHHHHH----hhccchhhhhhheeeccccccc
Confidence 99999999999998553 2223355689999999999863
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.85 E-value=1.4e-21 Score=170.99 Aligned_cols=62 Identities=31% Similarity=0.395 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCcccCCCCCCCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcC
Q psy15014 219 AMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSAS 282 (286)
Q Consensus 219 a~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~ 282 (286)
++++|..|..+|+++.|.+|..|||||+||+|+|.+..... ...+....++|+||||||||.
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~--~~~~~~~~s~l~lVDLAGsE~ 119 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA--SATEQPKVGKINLVDLAGSER 119 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC--CCccceeeeeEEEEEcccccc
Confidence 34466677888999999999999999999999999977533 223456788999999999996
No 30
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.19 E-value=0.05 Score=55.26 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=37.3
Q ss_pred CCCccccccccccccCCCCCCCCcChH----HHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccc
Q psy15014 2 LQTGSGKTYTMGTGFETDVSEEMLGII----PRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEV 70 (286)
Q Consensus 2 GqTGSGKTyTm~G~~~~~~~~~~~GIi----PRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i 70 (286)
|.|||||||||.--.. ..+.+-|| --...+||....+.. |...+.-.+||+.-|+-..
T Consensus 39 GvTGSGKTfT~AnVI~---~~~rPtLV~AhNKTLAaQLy~Efk~fF--------P~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 39 GVTGSGKTFTMANVIA---KVQRPTLVLAHNKTLAAQLYSEFKEFF--------PENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred eeccCCchhHHHHHHH---HhCCCeEEEecchhHHHHHHHHHHHhC--------cCcceEEEeeeccccCccc
Confidence 8999999999953110 00111111 013568888887763 4667777889999997765
No 31
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.47 E-value=0.13 Score=45.62 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=11.7
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|.||||||||+.
T Consensus 29 ~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 29 FGTTGSGKSNTVK 41 (229)
T ss_pred ECCCCCCHHHHHH
Confidence 4999999999994
No 32
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=87.87 E-value=0.16 Score=39.39 Aligned_cols=14 Identities=43% Similarity=0.375 Sum_probs=12.3
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
+|.||+|||++|..
T Consensus 6 ~~~~G~GKT~~~~~ 19 (144)
T cd00046 6 AAPTGSGKTLAALL 19 (144)
T ss_pred ECCCCCchhHHHHH
Confidence 58999999999964
No 33
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=86.43 E-value=0.004 Score=63.76 Aligned_cols=51 Identities=31% Similarity=0.342 Sum_probs=39.3
Q ss_pred HHHhcCCcccCCCCCCCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCcCc
Q psy15014 225 QGALSRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASE 283 (286)
Q Consensus 225 ~G~~~R~~~sT~~N~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~~~ 283 (286)
.....+..+.+..|.+++|+|.+|.......... .... .+++|||||+|+.
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-----~~~~---~~n~~~~~~~e~~ 536 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS-----TKEL---SLNQVDLAGSERK 536 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhh-----hHHH---Hhhhhhccccccc
Confidence 5677788899999999999999998877653321 1111 2799999999986
No 34
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.68 E-value=0.21 Score=41.59 Aligned_cols=13 Identities=46% Similarity=0.422 Sum_probs=11.5
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
+.||||||++|..
T Consensus 32 ~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 32 APTGSGKTIIALA 44 (184)
T ss_dssp ESTTSSHHHHHHH
T ss_pred ECCCCCcChhhhh
Confidence 6899999999974
No 35
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.97 E-value=0.29 Score=49.46 Aligned_cols=13 Identities=54% Similarity=0.488 Sum_probs=11.8
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
|+||||||.||..
T Consensus 265 GPTGSGKTTTLY~ 277 (500)
T COG2804 265 GPTGSGKTTTLYA 277 (500)
T ss_pred CCCCCCHHHHHHH
Confidence 8999999999954
No 36
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=83.28 E-value=0.34 Score=37.36 Aligned_cols=13 Identities=38% Similarity=0.342 Sum_probs=11.7
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|.+|||||+++.
T Consensus 8 ~G~~G~GKTtl~~ 20 (148)
T smart00382 8 VGPPGSGKTTLAR 20 (148)
T ss_pred ECCCCCcHHHHHH
Confidence 6999999999994
No 37
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.81 E-value=0.54 Score=45.03 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||||||.||.
T Consensus 132 GpTGSGKSTTlA 143 (353)
T COG2805 132 GPTGSGKSTTLA 143 (353)
T ss_pred CCCCCcHHHHHH
Confidence 899999999993
No 38
>PRK06620 hypothetical protein; Validated
Probab=80.62 E-value=0.49 Score=42.37 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.5
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++||||||.+..
T Consensus 50 ~Gp~G~GKThLl~a 63 (214)
T PRK06620 50 KGPSSSGKTYLTKI 63 (214)
T ss_pred ECCCCCCHHHHHHH
Confidence 89999999999953
No 39
>PRK08727 hypothetical protein; Validated
Probab=79.12 E-value=0.62 Score=42.06 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=12.3
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||.+|+||||-+..
T Consensus 47 ~G~~G~GKThL~~a 60 (233)
T PRK08727 47 SGPAGTGKTHLALA 60 (233)
T ss_pred ECCCCCCHHHHHHH
Confidence 79999999999853
No 40
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=78.98 E-value=0.64 Score=40.84 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||||||.+|.
T Consensus 8 GptGSGKTTll~ 19 (198)
T cd01131 8 GPTGSGKSTTLA 19 (198)
T ss_pred CCCCCCHHHHHH
Confidence 899999999994
No 41
>PF12846 AAA_10: AAA-like domain
Probab=78.40 E-value=0.68 Score=41.74 Aligned_cols=12 Identities=50% Similarity=0.534 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||++|.
T Consensus 8 G~tGsGKT~~~~ 19 (304)
T PF12846_consen 8 GKTGSGKTTLLK 19 (304)
T ss_pred CCCCCcHHHHHH
Confidence 999999999994
No 42
>PF13245 AAA_19: Part of AAA domain
Probab=78.01 E-value=0.73 Score=34.64 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=10.9
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|..|||||+|+.
T Consensus 17 g~pGtGKT~~~~ 28 (76)
T PF13245_consen 17 GPPGTGKTTTLA 28 (76)
T ss_pred CCCCCCHHHHHH
Confidence 789999999996
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=77.87 E-value=0.72 Score=41.48 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=12.5
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||-+..
T Consensus 45 ~G~~G~GKThL~~a 58 (229)
T PRK06893 45 WGGKSSGKSHLLKA 58 (229)
T ss_pred ECCCCCCHHHHHHH
Confidence 79999999999854
No 44
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.32 E-value=0.72 Score=36.01 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=11.0
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|.+|+|||+.+.
T Consensus 25 ~G~~G~GKT~l~~ 37 (151)
T cd00009 25 YGPPGTGKTTLAR 37 (151)
T ss_pred ECCCCCCHHHHHH
Confidence 6999999998763
No 45
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=76.48 E-value=0.73 Score=40.77 Aligned_cols=12 Identities=50% Similarity=0.540 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||+|||.|+.
T Consensus 8 GptGvGKTTt~a 19 (196)
T PF00448_consen 8 GPTGVGKTTTIA 19 (196)
T ss_dssp ESTTSSHHHHHH
T ss_pred CCCCCchHhHHH
Confidence 899999999994
No 46
>PRK08084 DNA replication initiation factor; Provisional
Probab=75.52 E-value=0.86 Score=41.19 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=12.5
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||.+..
T Consensus 51 ~Gp~G~GKThLl~a 64 (235)
T PRK08084 51 WSREGAGRSHLLHA 64 (235)
T ss_pred ECCCCCCHHHHHHH
Confidence 79999999999953
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=74.83 E-value=0.96 Score=40.89 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.3
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||.+|+||||-+..
T Consensus 51 ~G~~G~GKTHLl~a 64 (234)
T PRK05642 51 WGKDGVGRSHLLQA 64 (234)
T ss_pred ECCCCCCHHHHHHH
Confidence 79999999999853
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.74 E-value=0.7 Score=36.67 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=10.5
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+|||.++.
T Consensus 10 ~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 10 SGPPGSGKTTLIK 22 (131)
T ss_dssp EE-TTSSHHHHHH
T ss_pred EcCCCCCHHHHHH
Confidence 6999999999884
No 49
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=74.72 E-value=0.99 Score=43.24 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.||.
T Consensus 129 G~tGSGKTT~l~ 140 (343)
T TIGR01420 129 GPTGSGKSTTLA 140 (343)
T ss_pred CCCCCCHHHHHH
Confidence 899999999994
No 50
>PRK09087 hypothetical protein; Validated
Probab=74.34 E-value=0.96 Score=40.84 Aligned_cols=13 Identities=38% Similarity=0.309 Sum_probs=12.0
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+||||||-+.
T Consensus 50 ~G~~GsGKThLl~ 62 (226)
T PRK09087 50 AGPVGSGKTHLAS 62 (226)
T ss_pred ECCCCCCHHHHHH
Confidence 7999999999995
No 51
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=74.32 E-value=0.79 Score=41.10 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||.+|+||||-|..
T Consensus 40 ~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 40 YGPSGLGKTHLLQA 53 (219)
T ss_dssp EESTTSSHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 89999999998754
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=73.91 E-value=1 Score=43.76 Aligned_cols=12 Identities=50% Similarity=0.556 Sum_probs=11.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.||+|||.|+
T Consensus 48 yG~~GTGKT~~~ 59 (366)
T COG1474 48 YGPTGTGKTATV 59 (366)
T ss_pred ECCCCCCHhHHH
Confidence 899999999998
No 53
>PRK10436 hypothetical protein; Provisional
Probab=73.88 E-value=1.1 Score=44.97 Aligned_cols=12 Identities=58% Similarity=0.534 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||||||.||.
T Consensus 225 GpTGSGKTTtL~ 236 (462)
T PRK10436 225 GPTGSGKTVTLY 236 (462)
T ss_pred CCCCCChHHHHH
Confidence 899999999994
No 54
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=73.56 E-value=1.1 Score=43.45 Aligned_cols=12 Identities=42% Similarity=0.504 Sum_probs=11.0
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||||||.||.
T Consensus 141 GpTGSGKTTtL~ 152 (358)
T TIGR02524 141 GATGSGKSTLLA 152 (358)
T ss_pred CCCCCCHHHHHH
Confidence 899999999993
No 55
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=73.11 E-value=1 Score=35.48 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=26.3
Q ss_pred CCCCccccccccc------cc----cC-CCCCCCCcChHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMG------TG----FE-TDVSEEMLGIIPRAITHLFEGIQNI 42 (286)
Q Consensus 1 YGqTGSGKTyTm~------G~----~~-~~~~~~~~GIiPRal~~LF~~~~~~ 42 (286)
||+.|+|||+..- |- .+ ........+-..+.+..+|..+...
T Consensus 4 ~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred ECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence 7999999999872 10 00 0011234566777888888886553
No 56
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=72.89 E-value=1.2 Score=43.54 Aligned_cols=12 Identities=42% Similarity=0.459 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||||||.||.
T Consensus 156 G~TGSGKTT~l~ 167 (372)
T TIGR02525 156 GETGSGKSTLAA 167 (372)
T ss_pred CCCCCCHHHHHH
Confidence 899999999993
No 57
>PF13479 AAA_24: AAA domain
Probab=72.70 E-value=1.2 Score=39.68 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=11.9
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||++|+|||++..
T Consensus 9 yG~~G~GKTt~a~ 21 (213)
T PF13479_consen 9 YGPPGSGKTTLAA 21 (213)
T ss_pred ECCCCCCHHHHHH
Confidence 8999999999884
No 58
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=72.31 E-value=1.1 Score=40.92 Aligned_cols=12 Identities=50% Similarity=0.529 Sum_probs=11.0
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.+|.
T Consensus 134 G~tGSGKTT~l~ 145 (270)
T PF00437_consen 134 GPTGSGKTTLLN 145 (270)
T ss_dssp ESTTSSHHHHHH
T ss_pred CCCccccchHHH
Confidence 899999999994
No 59
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=72.07 E-value=1.2 Score=38.34 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=10.0
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+.|||||+|+.
T Consensus 24 GpPGTGKT~~l~ 35 (236)
T PF13086_consen 24 GPPGTGKTTTLA 35 (236)
T ss_dssp -STTSSHHHHHH
T ss_pred CCCCCChHHHHH
Confidence 899999999884
No 60
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=71.41 E-value=1.4 Score=45.32 Aligned_cols=12 Identities=50% Similarity=0.506 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.||.
T Consensus 323 G~tGSGKTTtl~ 334 (564)
T TIGR02538 323 GPTGSGKTVSLY 334 (564)
T ss_pred CCCCCCHHHHHH
Confidence 899999999994
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=70.65 E-value=1.3 Score=38.74 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=11.9
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||++|+||||.+.
T Consensus 44 ~G~~G~GKT~la~ 56 (226)
T TIGR03420 44 WGESGSGKSHLLQ 56 (226)
T ss_pred ECCCCCCHHHHHH
Confidence 7999999999984
No 62
>PRK06526 transposase; Provisional
Probab=70.12 E-value=1.3 Score=40.76 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||.+.+
T Consensus 104 ~Gp~GtGKThLa~a 117 (254)
T PRK06526 104 LGPPGTGKTHLAIG 117 (254)
T ss_pred EeCCCCchHHHHHH
Confidence 69999999999953
No 63
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.83 E-value=1.2 Score=38.69 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||....
T Consensus 53 ~G~~G~GKThLa~a 66 (178)
T PF01695_consen 53 YGPPGTGKTHLAVA 66 (178)
T ss_dssp EESTTSSHHHHHHH
T ss_pred EhhHhHHHHHHHHH
Confidence 69999999999864
No 64
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=69.69 E-value=1.5 Score=44.18 Aligned_cols=12 Identities=58% Similarity=0.512 Sum_probs=11.2
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||||||.||.
T Consensus 249 GptGSGKTTtL~ 260 (486)
T TIGR02533 249 GPTGSGKTTTLY 260 (486)
T ss_pred cCCCCCHHHHHH
Confidence 899999999994
No 65
>PRK06835 DNA replication protein DnaC; Validated
Probab=69.44 E-value=1.4 Score=42.19 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||-+..
T Consensus 189 ~G~~GtGKThLa~a 202 (329)
T PRK06835 189 YGNTGTGKTFLSNC 202 (329)
T ss_pred ECCCCCcHHHHHHH
Confidence 79999999998853
No 66
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=69.25 E-value=1.6 Score=40.35 Aligned_cols=12 Identities=58% Similarity=0.512 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.||.
T Consensus 87 G~tGSGKTT~l~ 98 (264)
T cd01129 87 GPTGSGKTTTLY 98 (264)
T ss_pred CCCCCcHHHHHH
Confidence 899999999994
No 67
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=69.24 E-value=1.6 Score=37.80 Aligned_cols=11 Identities=55% Similarity=0.540 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||||||.+|
T Consensus 32 G~tGSGKTTll 42 (186)
T cd01130 32 GGTGSGKTTLL 42 (186)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=69.08 E-value=1.5 Score=42.71 Aligned_cols=13 Identities=31% Similarity=0.235 Sum_probs=12.1
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||.+.
T Consensus 142 ~G~~G~GKThL~~ 154 (405)
T TIGR00362 142 YGGVGLGKTHLLH 154 (405)
T ss_pred ECCCCCcHHHHHH
Confidence 8999999999984
No 69
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=68.83 E-value=1.7 Score=40.58 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=12.0
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
.|+||+|||+|+..
T Consensus 200 vGptGvGKTTt~~k 213 (282)
T TIGR03499 200 VGPTGVGKTTTLAK 213 (282)
T ss_pred ECCCCCCHHHHHHH
Confidence 38999999999963
No 70
>PRK06921 hypothetical protein; Provisional
Probab=68.05 E-value=1.5 Score=40.55 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||.+..
T Consensus 123 ~G~~G~GKThLa~a 136 (266)
T PRK06921 123 LGQPGSGKTHLLTA 136 (266)
T ss_pred ECCCCCcHHHHHHH
Confidence 79999999999953
No 71
>KOG2543|consensus
Probab=67.51 E-value=1.8 Score=42.78 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=12.1
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+||||||++.
T Consensus 36 yG~sgTGKT~~~r 48 (438)
T KOG2543|consen 36 YGHSGTGKTYLVR 48 (438)
T ss_pred eccCCCchhHHHH
Confidence 8999999999984
No 72
>PRK12377 putative replication protein; Provisional
Probab=67.14 E-value=1.7 Score=40.01 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||.+..
T Consensus 107 ~G~~GtGKThLa~A 120 (248)
T PRK12377 107 SGKPGTGKNHLAAA 120 (248)
T ss_pred ECCCCCCHHHHHHH
Confidence 69999999999953
No 73
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=67.08 E-value=1.7 Score=42.99 Aligned_cols=13 Identities=31% Similarity=0.235 Sum_probs=12.0
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||.+.
T Consensus 154 ~G~~G~GKThL~~ 166 (450)
T PRK00149 154 YGGVGLGKTHLLH 166 (450)
T ss_pred ECCCCCCHHHHHH
Confidence 8999999999984
No 74
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=67.03 E-value=1.5 Score=38.23 Aligned_cols=14 Identities=43% Similarity=0.439 Sum_probs=10.3
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
+|.||||||.+|..
T Consensus 44 ~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 44 AGATGSGKSTLLRT 57 (205)
T ss_dssp E--TTSSHHHHHHH
T ss_pred EcCCCCCccHHHHH
Confidence 49999999999963
No 75
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=66.88 E-value=2 Score=35.27 Aligned_cols=13 Identities=46% Similarity=0.422 Sum_probs=11.2
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
|.||||||.++..
T Consensus 31 ~~~GsGKT~~~~~ 43 (201)
T smart00487 31 APTGSGKTLAALL 43 (201)
T ss_pred CCCCCchhHHHHH
Confidence 7899999998854
No 76
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=66.02 E-value=2 Score=41.18 Aligned_cols=12 Identities=50% Similarity=0.410 Sum_probs=10.9
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.+|-
T Consensus 151 G~tGSGKTTll~ 162 (323)
T PRK13833 151 GGTGSGKTTLAN 162 (323)
T ss_pred CCCCCCHHHHHH
Confidence 899999999993
No 77
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=65.87 E-value=1.8 Score=34.08 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=11.9
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|.|||+.+.
T Consensus 4 ~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 4 YGPPGIGKSTLAK 16 (107)
T ss_pred ECCCCCCHHHHHH
Confidence 8999999999984
No 78
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=65.86 E-value=1.9 Score=42.93 Aligned_cols=13 Identities=31% Similarity=0.245 Sum_probs=12.2
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||-|.
T Consensus 136 yG~~G~GKTHLl~ 148 (440)
T PRK14088 136 YGGVGLGKTHLLQ 148 (440)
T ss_pred EcCCCCcHHHHHH
Confidence 8999999999995
No 79
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=65.79 E-value=1.9 Score=42.68 Aligned_cols=13 Identities=31% Similarity=0.245 Sum_probs=12.1
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||-|.
T Consensus 119 ~G~~GlGKTHLl~ 131 (408)
T COG0593 119 YGGVGLGKTHLLQ 131 (408)
T ss_pred ECCCCCCHHHHHH
Confidence 8999999999994
No 80
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=65.71 E-value=2 Score=37.99 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=11.7
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||-+.
T Consensus 48 ~G~~G~GKT~La~ 60 (227)
T PRK08903 48 WGEAGSGRSHLLQ 60 (227)
T ss_pred ECCCCCCHHHHHH
Confidence 7999999999884
No 81
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=64.90 E-value=2.1 Score=41.32 Aligned_cols=11 Identities=55% Similarity=0.459 Sum_probs=10.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||||||.+|
T Consensus 169 G~tGSGKTTll 179 (344)
T PRK13851 169 GPTGSGKTTMS 179 (344)
T ss_pred CCCCccHHHHH
Confidence 89999999998
No 82
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=64.86 E-value=2.3 Score=40.11 Aligned_cols=11 Identities=55% Similarity=0.649 Sum_probs=10.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.||
T Consensus 34 GpSGsGKTTtL 44 (309)
T COG1125 34 GPSGSGKTTTL 44 (309)
T ss_pred CCCCCcHHHHH
Confidence 89999999998
No 83
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=64.61 E-value=3.4 Score=38.35 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=27.4
Q ss_pred EEEeccEEEEcC-CHHHHHHHHHHHHhcCCcccCCCCCCCCCCceeEEEEE
Q psy15014 203 IYVTGATSKSIR-SAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252 (286)
Q Consensus 203 v~v~gl~~~~V~-S~eea~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~v 252 (286)
+++..|..-.-. +...+..+|.-|...| ..-..+.+.|.|-|.|=.-.-
T Consensus 110 lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 110 LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhccchhhh
Confidence 344455433322 2445555555555444 566777888888888754333
No 84
>PRK08116 hypothetical protein; Validated
Probab=64.55 E-value=2.1 Score=39.72 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=12.0
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||.+.
T Consensus 120 ~G~~GtGKThLa~ 132 (268)
T PRK08116 120 WGSVGTGKTYLAA 132 (268)
T ss_pred ECCCCCCHHHHHH
Confidence 7999999999985
No 85
>KOG0953|consensus
Probab=64.45 E-value=7.7 Score=40.13 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCccccccccccccCCCCCCCCcChHHHHHHHHHHHHHHHH
Q psy15014 2 LQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIA 43 (286)
Q Consensus 2 GqTGSGKTyTm~G~~~~~~~~~~~GIiPRal~~LF~~~~~~~ 43 (286)
|+|+|||||--+--...-.+.--.|=+--...++|++++...
T Consensus 198 GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~g 239 (700)
T KOG0953|consen 198 GPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALG 239 (700)
T ss_pred CCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcC
Confidence 999999999885432222233445656666778898887653
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=63.13 E-value=2.3 Score=40.17 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||+++
T Consensus 46 ~G~~GtGKT~l~ 57 (365)
T TIGR02928 46 YGKTGTGKTAVT 57 (365)
T ss_pred ECCCCCCHHHHH
Confidence 799999999988
No 87
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=62.97 E-value=2.5 Score=39.86 Aligned_cols=12 Identities=50% Similarity=0.410 Sum_probs=10.9
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.+|-
T Consensus 139 G~tGSGKTTll~ 150 (299)
T TIGR02782 139 GGTGSGKTTLAN 150 (299)
T ss_pred CCCCCCHHHHHH
Confidence 899999999984
No 88
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=62.25 E-value=3.5 Score=45.06 Aligned_cols=12 Identities=50% Similarity=0.858 Sum_probs=10.4
Q ss_pred CCcccccccccc
Q psy15014 3 QTGSGKTYTMGT 14 (286)
Q Consensus 3 qTGSGKTyTm~G 14 (286)
.|||||||||.+
T Consensus 67 ~TGtGKT~~~~~ 78 (986)
T PRK15483 67 ETGTGKTYVYTR 78 (986)
T ss_pred CCCCCHHHHHHH
Confidence 599999998865
No 89
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.16 E-value=2.4 Score=41.62 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=11.7
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|+||+|||.|+.
T Consensus 180 vGptGvGKTTT~a 192 (388)
T PRK12723 180 VGPTGVGKTTTIA 192 (388)
T ss_pred ECCCCCCHHHHHH
Confidence 5999999999994
No 90
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=62.13 E-value=2.4 Score=38.13 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=11.5
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|+.|+|||+.+.
T Consensus 49 ~G~~G~GKTtl~~ 61 (269)
T TIGR03015 49 TGEVGAGKTTLIR 61 (269)
T ss_pred EcCCCCCHHHHHH
Confidence 6999999998883
No 91
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=61.91 E-value=2.6 Score=33.91 Aligned_cols=13 Identities=46% Similarity=0.317 Sum_probs=11.5
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+|||+.+.
T Consensus 5 ~G~~G~GKT~l~~ 17 (165)
T cd01120 5 FGPTGSGKTTLAL 17 (165)
T ss_pred eCCCCCCHHHHHH
Confidence 6999999999874
No 92
>PRK08181 transposase; Validated
Probab=61.72 E-value=2.5 Score=39.47 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||++|+||||-+.+
T Consensus 112 ~Gp~GtGKTHLa~A 125 (269)
T PRK08181 112 FGPPGGGKSHLAAA 125 (269)
T ss_pred EecCCCcHHHHHHH
Confidence 69999999999854
No 93
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=61.67 E-value=2.5 Score=40.42 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=11.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||+++
T Consensus 61 ~G~~GtGKT~l~ 72 (394)
T PRK00411 61 YGPPGTGKTTTV 72 (394)
T ss_pred ECCCCCCHHHHH
Confidence 799999999998
No 94
>PRK08939 primosomal protein DnaI; Reviewed
Probab=61.58 E-value=2.5 Score=40.03 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=12.5
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||.+|+||||-+..
T Consensus 162 ~G~~G~GKThLa~A 175 (306)
T PRK08939 162 YGDFGVGKSYLLAA 175 (306)
T ss_pred ECCCCCCHHHHHHH
Confidence 79999999999954
No 95
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=61.27 E-value=2.4 Score=36.61 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||++.
T Consensus 9 ~GpsGvGKT~la 20 (171)
T PF07724_consen 9 AGPSGVGKTELA 20 (171)
T ss_dssp ESSTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 499999999976
No 96
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=61.25 E-value=2.9 Score=34.91 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||+||||+-
T Consensus 60 G~tGtGKn~v~ 70 (127)
T PF06309_consen 60 GWTGTGKNFVS 70 (127)
T ss_pred cCCCCcHHHHH
Confidence 89999999976
No 97
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=61.07 E-value=2.8 Score=34.47 Aligned_cols=13 Identities=46% Similarity=0.432 Sum_probs=11.4
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
|+||+|||..+..
T Consensus 21 aptGsGKT~~~~~ 33 (169)
T PF00270_consen 21 APTGSGKTLAYIL 33 (169)
T ss_dssp CSTTSSHHHHHHH
T ss_pred CCCCCccHHHHHH
Confidence 7899999999864
No 98
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.04 E-value=2.7 Score=39.12 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||+++
T Consensus 42 ~Gp~GtGKT~la 53 (337)
T PRK12402 42 QGPPGSGKTAAV 53 (337)
T ss_pred ECCCCCCHHHHH
Confidence 799999999988
No 99
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=60.90 E-value=2.6 Score=30.78 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=10.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||.-|
T Consensus 29 ~G~nGsGKSTll 40 (62)
T PF13555_consen 29 TGPNGSGKSTLL 40 (62)
T ss_pred ECCCCCCHHHHH
Confidence 489999999766
No 100
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=60.71 E-value=2.7 Score=41.99 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=12.5
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||.+|+||||.|..
T Consensus 147 ~G~~G~GKTHLl~A 160 (450)
T PRK14087 147 YGESGMGKTHLLKA 160 (450)
T ss_pred ECCCCCcHHHHHHH
Confidence 89999999999943
No 101
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=60.70 E-value=2.7 Score=38.35 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=11.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||++.
T Consensus 48 ~GppGtGKTtlA 59 (261)
T TIGR02881 48 KGNPGTGKTTVA 59 (261)
T ss_pred EcCCCCCHHHHH
Confidence 799999999987
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=60.55 E-value=8.4 Score=40.43 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=36.7
Q ss_pred CCCCccccccccccccCCCCCCCCcChH----HHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEEEEEEEEcccc
Q psy15014 1 MLQTGSGKTYTMGTGFETDVSEEMLGII----PRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEV 70 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~~~~~~~~GIi----PRal~~LF~~~~~~~~~~~~~~~~~~~~~v~~S~~EIYnE~i 70 (286)
+|.||||||+||..-... ...+-|| -....+|+..+...- +...+...+||+.-|.-..
T Consensus 35 ~Gvtgs~kt~~~a~~~~~---~~~p~Lvi~~n~~~A~ql~~el~~f~--------p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 35 LGVTGSGKTFTMANVIAQ---VNRPTLVIAHNKTLAAQLYNEFKEFF--------PENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred ECCCCcHHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHHhC--------CCCeEEEEeeecccCCccc
Confidence 489999999999542110 0111111 124567777776652 2445778899999887765
No 103
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.40 E-value=2.8 Score=41.05 Aligned_cols=13 Identities=54% Similarity=0.529 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|+||+|||+|+.
T Consensus 143 vGptGvGKTTtia 155 (374)
T PRK14722 143 MGPTGVGKTTTTA 155 (374)
T ss_pred ECCCCCCHHHHHH
Confidence 4999999999994
No 104
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=60.26 E-value=3 Score=40.01 Aligned_cols=12 Identities=33% Similarity=0.196 Sum_probs=10.9
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.+|-
T Consensus 167 G~tgSGKTTll~ 178 (332)
T PRK13900 167 GGTSTGKTTFTN 178 (332)
T ss_pred CCCCCCHHHHHH
Confidence 899999999983
No 105
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=59.70 E-value=3.2 Score=41.12 Aligned_cols=11 Identities=55% Similarity=0.582 Sum_probs=10.8
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||-|||.|+
T Consensus 210 GPTGVGKTTTl 220 (407)
T COG1419 210 GPTGVGKTTTL 220 (407)
T ss_pred CCCCCcHHHHH
Confidence 99999999999
No 106
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=59.54 E-value=2.8 Score=32.91 Aligned_cols=12 Identities=33% Similarity=0.288 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||+..
T Consensus 5 ~G~~gsGKST~a 16 (121)
T PF13207_consen 5 SGPPGSGKSTLA 16 (121)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 389999999876
No 107
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=59.44 E-value=3.1 Score=39.71 Aligned_cols=12 Identities=50% Similarity=0.473 Sum_probs=10.5
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||++|.
T Consensus 155 G~tGSGKTTll~ 166 (319)
T PRK13894 155 GGTGSGKTTLVN 166 (319)
T ss_pred CCCCCCHHHHHH
Confidence 899999997773
No 108
>PRK09183 transposase/IS protein; Provisional
Probab=59.33 E-value=3 Score=38.43 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=11.8
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||++|+||||-+.
T Consensus 108 ~Gp~GtGKThLa~ 120 (259)
T PRK09183 108 LGPSGVGKTHLAI 120 (259)
T ss_pred EeCCCCCHHHHHH
Confidence 6999999999985
No 109
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=59.30 E-value=3 Score=38.37 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||+.|+||||-...
T Consensus 111 ~G~~G~GKThLa~A 124 (254)
T COG1484 111 LGPPGVGKTHLAIA 124 (254)
T ss_pred ECCCCCcHHHHHHH
Confidence 79999999999853
No 110
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=59.12 E-value=3 Score=40.21 Aligned_cols=12 Identities=42% Similarity=0.490 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+|||||++-+
T Consensus 93 YGPTG~GKSqLl 104 (369)
T PF02456_consen 93 YGPTGSGKSQLL 104 (369)
T ss_pred ECCCCCCHHHHH
Confidence 999999999987
No 111
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.02 E-value=3.8 Score=38.97 Aligned_cols=11 Identities=64% Similarity=0.694 Sum_probs=10.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.|||||+.||
T Consensus 134 GaTGSGKSTtm 144 (375)
T COG5008 134 GATGSGKSTTM 144 (375)
T ss_pred CCCCCCchhhH
Confidence 89999999999
No 112
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.32 E-value=2.6 Score=34.14 Aligned_cols=13 Identities=31% Similarity=0.325 Sum_probs=11.4
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|++|+|||+.+.
T Consensus 5 ~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 5 VGPPGTGKTTLAR 17 (139)
T ss_dssp EESSSSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 5999999998874
No 113
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=57.45 E-value=3.3 Score=34.62 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=9.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|..|+|||+.+
T Consensus 30 ~G~~G~GKT~ll 41 (185)
T PF13191_consen 30 TGESGSGKTSLL 41 (185)
T ss_dssp -B-TTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 114
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=57.28 E-value=3.1 Score=36.52 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=10.7
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|..||||||+|.
T Consensus 25 G~aGtGKT~~l~ 36 (196)
T PF13604_consen 25 GPAGTGKTTLLK 36 (196)
T ss_dssp ESTTSTHHHHHH
T ss_pred ECCCCCHHHHHH
Confidence 788999999984
No 115
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=56.87 E-value=3.7 Score=36.87 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=10.8
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||+++-
T Consensus 6 G~sGSGKTTla~ 17 (220)
T cd02025 6 GSVAVGKSTTAR 17 (220)
T ss_pred CCCCCCHHHHHH
Confidence 899999999983
No 116
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=56.27 E-value=3.8 Score=35.42 Aligned_cols=12 Identities=42% Similarity=0.385 Sum_probs=10.7
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||+.+-
T Consensus 6 G~~GsGKSTl~~ 17 (198)
T cd02023 6 GGSGSGKTTVAE 17 (198)
T ss_pred CCCCCCHHHHHH
Confidence 899999999883
No 117
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=55.76 E-value=3.6 Score=32.11 Aligned_cols=12 Identities=42% Similarity=0.288 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||+..
T Consensus 4 ~G~~GsGKtTia 15 (129)
T PF13238_consen 4 SGIPGSGKTTIA 15 (129)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 389999999876
No 118
>KOG0989|consensus
Probab=55.45 E-value=4.1 Score=39.21 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=11.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||.|.
T Consensus 63 yGPpGTGKTSta 74 (346)
T KOG0989|consen 63 YGPPGTGKTSTA 74 (346)
T ss_pred eCCCCCcHhHHH
Confidence 899999999998
No 119
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=55.17 E-value=3.4 Score=37.44 Aligned_cols=13 Identities=46% Similarity=0.473 Sum_probs=10.1
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
|..|||||+||..
T Consensus 20 a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 20 AGAGSGKTTTLLE 32 (315)
T ss_dssp E-TTSSHHHHHHH
T ss_pred eCCCCCchHHHHH
Confidence 5579999999953
No 120
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=54.89 E-value=3.1 Score=35.01 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=11.1
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|+|||..|
T Consensus 25 ~G~Ng~GKStil 36 (202)
T PF13476_consen 25 YGPNGSGKSTIL 36 (202)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 799999999888
No 121
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.83 E-value=4.2 Score=41.20 Aligned_cols=12 Identities=50% Similarity=0.454 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||+|||.|+.
T Consensus 263 GpnGvGKTTTia 274 (484)
T PRK06995 263 GPTGVGKTTTTA 274 (484)
T ss_pred CCCCccHHHHHH
Confidence 999999999993
No 122
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=54.50 E-value=3.9 Score=40.79 Aligned_cols=13 Identities=46% Similarity=0.457 Sum_probs=12.0
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||-+.
T Consensus 147 ~G~~G~GKTHLl~ 159 (445)
T PRK12422 147 FGPEGSGKTHLMQ 159 (445)
T ss_pred EcCCCCCHHHHHH
Confidence 8999999999984
No 123
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=54.32 E-value=4.4 Score=36.02 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||.+|
T Consensus 31 vGpNGaGKSTll 42 (212)
T cd03274 31 VGPNGSGKSNVI 42 (212)
T ss_pred ECCCCCCHHHHH
Confidence 399999999998
No 124
>PRK07952 DNA replication protein DnaC; Validated
Probab=54.09 E-value=4 Score=37.49 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=12.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||.+|+||||.+..
T Consensus 105 ~G~~GtGKThLa~a 118 (244)
T PRK07952 105 SGKPGTGKNHLAAA 118 (244)
T ss_pred ECCCCCCHHHHHHH
Confidence 69999999999964
No 125
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.33 E-value=4.9 Score=39.05 Aligned_cols=11 Identities=55% Similarity=0.516 Sum_probs=9.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||||||+--
T Consensus 104 GPTGsGKTlLA 114 (408)
T COG1219 104 GPTGSGKTLLA 114 (408)
T ss_pred CCCCCcHHHHH
Confidence 89999999743
No 126
>PRK13764 ATPase; Provisional
Probab=53.14 E-value=4.6 Score=42.01 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||+++.
T Consensus 264 G~TGSGKTTll~ 275 (602)
T PRK13764 264 GAPGAGKSTFAQ 275 (602)
T ss_pred CCCCCCHHHHHH
Confidence 899999999994
No 127
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=52.99 E-value=4.6 Score=42.31 Aligned_cols=11 Identities=64% Similarity=0.712 Sum_probs=10.1
Q ss_pred CCccccccccc
Q psy15014 3 QTGSGKTYTMG 13 (286)
Q Consensus 3 qTGSGKTyTm~ 13 (286)
.||||||+||.
T Consensus 271 ~TGsGKT~t~~ 281 (667)
T TIGR00348 271 TQGSGKTLTML 281 (667)
T ss_pred ecCCCccHHHH
Confidence 69999999995
No 128
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=52.67 E-value=4.5 Score=38.83 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||+.+
T Consensus 162 ~GppGtGKT~la 173 (364)
T TIGR01242 162 YGPPGTGKTLLA 173 (364)
T ss_pred ECCCCCCHHHHH
Confidence 799999999888
No 129
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=52.59 E-value=4.7 Score=38.28 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=27.9
Q ss_pred CCCCcccccccc---ccccCC--------CCCCCCcChHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTM---GTGFET--------DVSEEMLGIIPRAITHLFEGIQNI 42 (286)
Q Consensus 1 YGqTGSGKTyTm---~G~~~~--------~~~~~~~GIiPRal~~LF~~~~~~ 42 (286)
||++|+|||.+- .+.... ..-.+..|=--|-+++||++..+.
T Consensus 157 yGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~ 209 (368)
T COG1223 157 YGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKA 209 (368)
T ss_pred ECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 899999999875 111110 011245566678999999998775
No 130
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=52.53 E-value=4.8 Score=39.15 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=10.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.++
T Consensus 38 GPSGcGKTTlL 48 (352)
T COG3842 38 GPSGCGKTTLL 48 (352)
T ss_pred CCCCCCHHHHH
Confidence 89999999998
No 131
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=51.87 E-value=5.1 Score=34.94 Aligned_cols=12 Identities=42% Similarity=0.379 Sum_probs=9.6
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
||.|||||+.+-
T Consensus 22 G~~GsGKSt~~~ 33 (199)
T PF06414_consen 22 GQPGSGKSTLAR 33 (199)
T ss_dssp S-TTSTTHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 999999998873
No 132
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=51.58 E-value=4.6 Score=36.61 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=11.9
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||..|+|||+..-
T Consensus 18 yG~~G~GKtt~a~ 30 (220)
T TIGR01618 18 YGKPGTGKTSTIK 30 (220)
T ss_pred ECCCCCCHHHHHH
Confidence 8999999999883
No 133
>KOG1803|consensus
Probab=51.18 E-value=6.1 Score=40.99 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+.|+|||||+.
T Consensus 208 GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 208 GPPGTGKTRTLV 219 (649)
T ss_pred CCCCCCceeeHH
Confidence 899999999993
No 134
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.07 E-value=5.3 Score=39.64 Aligned_cols=13 Identities=46% Similarity=0.547 Sum_probs=11.5
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|+||+|||+|+.
T Consensus 227 vGptGvGKTTt~~ 239 (424)
T PRK05703 227 VGPTGVGKTTTLA 239 (424)
T ss_pred ECCCCCCHHHHHH
Confidence 3899999999984
No 135
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=50.75 E-value=5 Score=41.81 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=12.1
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|+||||-+.
T Consensus 320 yG~sGsGKTHLL~ 332 (617)
T PRK14086 320 YGESGLGKTHLLH 332 (617)
T ss_pred ECCCCCCHHHHHH
Confidence 8999999999984
No 136
>PRK08233 hypothetical protein; Provisional
Probab=49.24 E-value=6 Score=33.16 Aligned_cols=11 Identities=36% Similarity=0.435 Sum_probs=9.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+..
T Consensus 10 G~~GsGKtTla 20 (182)
T PRK08233 10 AVSGGGKTTLT 20 (182)
T ss_pred CCCCCCHHHHH
Confidence 89999999865
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=49.20 E-value=5.6 Score=36.88 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=11.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||+.+
T Consensus 49 ~G~~G~GKT~la 60 (316)
T PHA02544 49 SPSPGTGKTTVA 60 (316)
T ss_pred eCcCCCCHHHHH
Confidence 799999999988
No 138
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=48.87 E-value=6 Score=31.94 Aligned_cols=13 Identities=31% Similarity=0.141 Sum_probs=10.9
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|++|||||.++.
T Consensus 21 ~GpSGsGKSTLl~ 33 (107)
T cd00820 21 TGDSGIGKTELAL 33 (107)
T ss_pred EcCCCCCHHHHHH
Confidence 3899999998873
No 139
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=48.64 E-value=5.5 Score=32.02 Aligned_cols=12 Identities=33% Similarity=0.301 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|..|||||+..
T Consensus 5 ~G~pgsGKSt~a 16 (143)
T PF13671_consen 5 CGPPGSGKSTLA 16 (143)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 389999999876
No 140
>PF13173 AAA_14: AAA domain
Probab=48.46 E-value=5.7 Score=32.04 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|+.|+|||+.|.
T Consensus 8 ~G~R~vGKTtll~ 20 (128)
T PF13173_consen 8 TGPRGVGKTTLLK 20 (128)
T ss_pred ECCCCCCHHHHHH
Confidence 6999999999984
No 141
>PLN03025 replication factor C subunit; Provisional
Probab=48.16 E-value=5.8 Score=37.33 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||+.|+|||++..
T Consensus 40 ~Gp~G~GKTtla~ 52 (319)
T PLN03025 40 SGPPGTGKTTSIL 52 (319)
T ss_pred ECCCCCCHHHHHH
Confidence 7999999998873
No 142
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.80 E-value=6.3 Score=39.19 Aligned_cols=11 Identities=55% Similarity=0.480 Sum_probs=10.7
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||+|||.||
T Consensus 198 GpnG~GKTTtl 208 (420)
T PRK14721 198 GPTGVGKTTTT 208 (420)
T ss_pred CCCCCCHHHHH
Confidence 89999999999
No 143
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=47.53 E-value=6.6 Score=33.33 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 499999999988
No 144
>KOG0926|consensus
Probab=47.35 E-value=9.6 Score=41.13 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=22.4
Q ss_pred CCCccccccccc-----cccCCCCCCCCcChH----HHHHHHHHHHH
Q psy15014 2 LQTGSGKTYTMG-----TGFETDVSEEMLGII----PRAITHLFEGI 39 (286)
Q Consensus 2 GqTGSGKTyTm~-----G~~~~~~~~~~~GIi----PRal~~LF~~~ 39 (286)
|+||||||.-+- -|+..... ++.||| ||-+..|-...
T Consensus 278 GeTGsGKTTQvPQFLYEAGf~s~~~-~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 278 GETGSGKTTQVPQFLYEAGFASEQS-SSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred cCCCCCccccchHHHHHcccCCccC-CCCCeeeecCchHHHHHHHHH
Confidence 999999999881 12322222 235665 78777665443
No 145
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=47.24 E-value=6 Score=37.33 Aligned_cols=12 Identities=33% Similarity=0.230 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||+..
T Consensus 57 ~GppG~GKT~la 68 (328)
T PRK00080 57 YGPPGLGKTTLA 68 (328)
T ss_pred ECCCCccHHHHH
Confidence 899999999987
No 146
>PF05729 NACHT: NACHT domain
Probab=47.03 E-value=6.4 Score=31.95 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.3
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|..|+|||..|.
T Consensus 6 ~G~~G~GKStll~ 18 (166)
T PF05729_consen 6 SGEPGSGKSTLLR 18 (166)
T ss_pred ECCCCCChHHHHH
Confidence 5999999999884
No 147
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=46.95 E-value=5.9 Score=34.34 Aligned_cols=11 Identities=45% Similarity=0.428 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+.-
T Consensus 6 G~sgSGKTTla 16 (194)
T PF00485_consen 6 GPSGSGKTTLA 16 (194)
T ss_dssp ESTTSSHHHHH
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 148
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=46.35 E-value=6.3 Score=36.35 Aligned_cols=12 Identities=33% Similarity=0.230 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||+..
T Consensus 36 ~Gp~G~GKT~la 47 (305)
T TIGR00635 36 YGPPGLGKTTLA 47 (305)
T ss_pred ECCCCCCHHHHH
Confidence 799999999987
No 149
>CHL00181 cbbX CbbX; Provisional
Probab=46.02 E-value=6.7 Score=36.71 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|+|||+..
T Consensus 65 ~G~pGtGKT~lA 76 (287)
T CHL00181 65 TGSPGTGKTTVA 76 (287)
T ss_pred ECCCCCCHHHHH
Confidence 699999999876
No 150
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=45.86 E-value=7.1 Score=37.79 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.++
T Consensus 36 GPSGcGKSTlL 46 (338)
T COG3839 36 GPSGCGKSTLL 46 (338)
T ss_pred CCCCCCHHHHH
Confidence 89999999998
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=45.33 E-value=6.7 Score=36.56 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|+|||+.-
T Consensus 64 ~G~pGTGKT~lA 75 (284)
T TIGR02880 64 TGNPGTGKTTVA 75 (284)
T ss_pred EcCCCCCHHHHH
Confidence 699999999865
No 152
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=45.09 E-value=6.5 Score=35.81 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCCCcccccccc------ccccCCCCCCCCcChHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTM------GTGFETDVSEEMLGIIPRAITHLFEGIQNI 42 (286)
Q Consensus 1 YGqTGSGKTyTm------~G~~~~~~~~~~~GIiPRal~~LF~~~~~~ 42 (286)
+|++|+|||.|+ +|-.- -.-.-..++=.-.+..||..+...
T Consensus 38 ~GpagtGKtetik~La~~lG~~~-~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 38 SGPAGTGKTETIKDLARALGRFV-VVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp ESSTTSSHHHHHHHHHHCTT--E-EEEETTSSS-HHHHHHHHHHHHHH
T ss_pred cCCCCCCchhHHHHHHHHhCCeE-EEecccccccHHHHHHHHHHHhhc
Confidence 699999999999 33100 001133455566777777776553
No 153
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=45.05 E-value=6.6 Score=41.03 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|+.|+|||||+.
T Consensus 179 ~GpPGTGKT~t~~ 191 (637)
T TIGR00376 179 HGPPGTGKTRTLV 191 (637)
T ss_pred EcCCCCCHHHHHH
Confidence 4899999999995
No 154
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.46 E-value=7.5 Score=38.81 Aligned_cols=12 Identities=50% Similarity=0.548 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||+|||.|+.
T Consensus 248 GptGvGKTTTia 259 (436)
T PRK11889 248 GPTGVGKTTTLA 259 (436)
T ss_pred CCCCCcHHHHHH
Confidence 899999999994
No 155
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=44.23 E-value=7.7 Score=36.53 Aligned_cols=11 Identities=55% Similarity=0.513 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||||||..|
T Consensus 151 G~tGsGKTTll 161 (308)
T TIGR02788 151 GGTGSGKTTFL 161 (308)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 156
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=44.17 E-value=7.4 Score=38.15 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.||||||..|
T Consensus 48 ~g~tGsGKt~~i 59 (410)
T cd01127 48 IGTTGTGKTTQI 59 (410)
T ss_pred EcCCCCCHHHHH
Confidence 599999999887
No 157
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=43.88 E-value=6 Score=33.97 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||..|
T Consensus 26 ~G~rg~GKTsLl 37 (234)
T PF01637_consen 26 YGPRGSGKTSLL 37 (234)
T ss_dssp EESTTSSHHHHH
T ss_pred EcCCcCCHHHHH
Confidence 799999999988
No 158
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=43.80 E-value=7.9 Score=32.73 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 8 G~sGsGKttl~ 18 (179)
T TIGR02322 8 GPSGAGKDTLL 18 (179)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 159
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=43.59 E-value=7.8 Score=37.78 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=23.7
Q ss_pred CCCCcccccccccc---ccCC--------CCCCCCcChHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGT---GFET--------DVSEEMLGIIPRAITHLFEGIQN 41 (286)
Q Consensus 1 YGqTGSGKTyTm~G---~~~~--------~~~~~~~GIiPRal~~LF~~~~~ 41 (286)
||++|+|||+..-- .... .......|-.++.+..+|.....
T Consensus 171 ~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 222 (389)
T PRK03992 171 YGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELARE 222 (389)
T ss_pred ECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHh
Confidence 89999999987611 0000 00111234456778888887654
No 160
>PRK05480 uridine/cytidine kinase; Provisional
Probab=43.52 E-value=8 Score=33.74 Aligned_cols=11 Identities=45% Similarity=0.444 Sum_probs=9.8
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+..
T Consensus 13 G~sGsGKTTl~ 23 (209)
T PRK05480 13 GGSGSGKTTVA 23 (209)
T ss_pred CCCCCCHHHHH
Confidence 89999999766
No 161
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=43.44 E-value=7.6 Score=39.65 Aligned_cols=12 Identities=42% Similarity=0.487 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|+|||.|+
T Consensus 51 tGP~G~GKtttv 62 (519)
T PF03215_consen 51 TGPSGCGKTTTV 62 (519)
T ss_pred ECCCCCCHHHHH
Confidence 699999999998
No 162
>PTZ00301 uridine kinase; Provisional
Probab=43.27 E-value=8.4 Score=34.48 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=9.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+.-
T Consensus 10 G~SgSGKTTla 20 (210)
T PTZ00301 10 GASGSGKSSLS 20 (210)
T ss_pred CCCcCCHHHHH
Confidence 89999999864
No 163
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=42.97 E-value=7.7 Score=35.65 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=11.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||+++
T Consensus 44 ~G~~G~GKt~~~ 55 (319)
T PRK00440 44 AGPPGTGKTTAA 55 (319)
T ss_pred ECCCCCCHHHHH
Confidence 799999999887
No 164
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=42.85 E-value=7.5 Score=43.34 Aligned_cols=13 Identities=46% Similarity=0.555 Sum_probs=10.9
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
-.||||||+||..
T Consensus 440 maTGSGKT~tai~ 452 (1123)
T PRK11448 440 MATGTGKTRTAIA 452 (1123)
T ss_pred eCCCCCHHHHHHH
Confidence 3799999999864
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=42.72 E-value=7.9 Score=38.86 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||+.+
T Consensus 94 ~GppGtGKT~la 105 (495)
T TIGR01241 94 VGPPGTGKTLLA 105 (495)
T ss_pred ECCCCCCHHHHH
Confidence 799999999987
No 166
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.72 E-value=8.5 Score=38.14 Aligned_cols=13 Identities=54% Similarity=0.547 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|++|+|||+|+.
T Consensus 212 vGptGvGKTTt~a 224 (407)
T PRK12726 212 IGQTGVGKTTTLV 224 (407)
T ss_pred ECCCCCCHHHHHH
Confidence 3899999999995
No 167
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=42.57 E-value=8.1 Score=36.58 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=11.9
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||+.|||||.+|.
T Consensus 29 ~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 29 TGERGSGKSVLLA 41 (309)
T ss_pred ECCCCCCHHHHHH
Confidence 7999999999994
No 168
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.55 E-value=8.2 Score=39.13 Aligned_cols=13 Identities=46% Similarity=0.309 Sum_probs=11.2
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.||||||-.++
T Consensus 3 ~g~TGsGKT~v~l 15 (505)
T TIGR00595 3 FGVTGSGKTEVYL 15 (505)
T ss_pred cCCCCCCHHHHHH
Confidence 6999999998764
No 169
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=42.38 E-value=8.5 Score=36.07 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=10.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+.|+|||.+|
T Consensus 38 G~NGAGKTTll 48 (293)
T COG1131 38 GPNGAGKTTLL 48 (293)
T ss_pred CCCCCCHHHHH
Confidence 89999999998
No 170
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=41.75 E-value=9.1 Score=33.71 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 34 ~G~NGsGKSTll 45 (213)
T cd03279 34 CGPTGAGKSTIL 45 (213)
T ss_pred ECCCCCCHHHHH
Confidence 399999999988
No 171
>PRK06547 hypothetical protein; Provisional
Probab=41.61 E-value=8.7 Score=33.19 Aligned_cols=12 Identities=42% Similarity=0.357 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.+|||||+.-
T Consensus 21 ~G~~GsGKTt~a 32 (172)
T PRK06547 21 DGRSGSGKTTLA 32 (172)
T ss_pred ECCCCCCHHHHH
Confidence 499999999876
No 172
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=41.54 E-value=8.9 Score=36.57 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=11.0
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|++|+|||.|+.
T Consensus 121 GpnGsGKTTt~~ 132 (318)
T PRK10416 121 GVNGVGKTTTIG 132 (318)
T ss_pred CCCCCcHHHHHH
Confidence 899999999984
No 173
>KOG0335|consensus
Probab=41.52 E-value=11 Score=38.10 Aligned_cols=13 Identities=54% Similarity=0.516 Sum_probs=11.4
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
+|||||||+--+.
T Consensus 118 AqTGsGKT~aFLi 130 (482)
T KOG0335|consen 118 AQTGSGKTAAFLI 130 (482)
T ss_pred ccCCCcchHHHHH
Confidence 6999999998865
No 174
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.38 E-value=9.2 Score=40.91 Aligned_cols=12 Identities=50% Similarity=0.484 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|+||+|||.|+
T Consensus 191 VGpnGvGKTTTi 202 (767)
T PRK14723 191 VGPTGVGKTTTT 202 (767)
T ss_pred ECCCCCcHHHHH
Confidence 399999999999
No 175
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=41.36 E-value=8.4 Score=42.23 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=11.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||.|+
T Consensus 787 yG~PGTGKTATV 798 (1164)
T PTZ00112 787 SGMPGTGKTATV 798 (1164)
T ss_pred ECCCCCCHHHHH
Confidence 799999999998
No 176
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=41.26 E-value=9.6 Score=31.69 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=8.8
Q ss_pred CCCccccccc
Q psy15014 2 LQTGSGKTYT 11 (286)
Q Consensus 2 GqTGSGKTyT 11 (286)
|.+|||||+.
T Consensus 5 G~~GsGKSTl 14 (163)
T TIGR01313 5 GVAGSGKSTI 14 (163)
T ss_pred CCCCCCHHHH
Confidence 8999999865
No 177
>PRK07261 topology modulation protein; Provisional
Probab=41.18 E-value=9.6 Score=32.59 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+-.
T Consensus 7 G~~GsGKSTla 17 (171)
T PRK07261 7 GYSGSGKSTLA 17 (171)
T ss_pred cCCCCCHHHHH
Confidence 99999999876
No 178
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=40.94 E-value=8 Score=35.46 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=9.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||..-
T Consensus 7 ~GpT~tGKt~~a 18 (233)
T PF01745_consen 7 VGPTGTGKTALA 18 (233)
T ss_dssp E-STTSSHHHHH
T ss_pred ECCCCCChhHHH
Confidence 599999999865
No 179
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=40.64 E-value=11 Score=38.14 Aligned_cols=11 Identities=55% Similarity=0.682 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||+|||-|+
T Consensus 26 GATGTGKTvTL 36 (502)
T PF05872_consen 26 GATGTGKTVTL 36 (502)
T ss_pred ccCCCCceehH
Confidence 88999999998
No 180
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=40.62 E-value=9.3 Score=35.52 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=11.0
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|++|+|||.|..
T Consensus 79 G~~G~GKTTt~a 90 (272)
T TIGR00064 79 GVNGVGKTTTIA 90 (272)
T ss_pred CCCCCcHHHHHH
Confidence 899999999984
No 181
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=40.09 E-value=9.8 Score=29.66 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=10.6
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||..+-
T Consensus 3 G~~gsGKstl~~ 14 (163)
T cd00880 3 GRTNAGKSSLLN 14 (163)
T ss_pred CCCCCCHHHHHH
Confidence 899999998883
No 182
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=39.77 E-value=9.9 Score=35.91 Aligned_cols=11 Identities=27% Similarity=0.199 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+++
T Consensus 69 G~~GSGKSTla 79 (290)
T TIGR00554 69 GSVAVGKSTTA 79 (290)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 183
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=39.73 E-value=9.9 Score=34.73 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=13.8
Q ss_pred EcCCHHHHHHHHHHHHhcC
Q psy15014 212 SIRSAQEAMNALRQGALSR 230 (286)
Q Consensus 212 ~V~S~eea~~lL~~G~~~R 230 (286)
...+.++++.+|..-.+.+
T Consensus 174 D~~t~~~V~~ll~~~~~~~ 192 (226)
T COG1136 174 DSKTAKEVLELLRELNKER 192 (226)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 4567889999998766543
No 184
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=39.65 E-value=9.3 Score=38.19 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCCcccccccccc---ccC--------CCCCCCCcChHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGT---GFE--------TDVSEEMLGIIPRAITHLFEGIQN 41 (286)
Q Consensus 1 YGqTGSGKTyTm~G---~~~--------~~~~~~~~GIiPRal~~LF~~~~~ 41 (286)
||++|+|||.+.-- ... ......-.|--++.+..+|.....
T Consensus 223 ~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 223 YGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 274 (438)
T ss_pred ECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHh
Confidence 89999999998721 000 000112235557778888876543
No 185
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=39.47 E-value=9.9 Score=37.00 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=12.2
Q ss_pred EEEEEcccccccch
Q psy15014 62 FLELYNEEVSGLEH 75 (286)
Q Consensus 62 ~~EIYnE~i~DLL~ 75 (286)
+=||+..+.+|||.
T Consensus 254 VGEVRG~Ea~dLL~ 267 (355)
T COG4962 254 VGEVRGVEALDLLQ 267 (355)
T ss_pred EEEecCccHHHHHH
Confidence 46999999999996
No 186
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=39.08 E-value=10 Score=40.10 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=11.1
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||++|.
T Consensus 437 G~tGsGKS~~~~ 448 (797)
T TIGR02746 437 GGSGAGKSFFMQ 448 (797)
T ss_pred cCCCCCHHHHHH
Confidence 899999999993
No 187
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=38.77 E-value=11 Score=30.17 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=10.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..-
T Consensus 5 ~G~~GsGKst~a 16 (147)
T cd02020 5 DGPAGSGKSTVA 16 (147)
T ss_pred ECCCCCCHHHHH
Confidence 389999999854
No 188
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=38.39 E-value=11 Score=32.00 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=10.4
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||..+.
T Consensus 6 G~~gsGKTtl~~ 17 (155)
T TIGR00176 6 GPKNSGKTTLIE 17 (155)
T ss_pred CCCCCCHHHHHH
Confidence 889999998773
No 189
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=38.38 E-value=11 Score=33.05 Aligned_cols=11 Identities=45% Similarity=0.444 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+.+
T Consensus 13 G~sGsGKSTl~ 23 (207)
T TIGR00235 13 GGSGSGKTTVA 23 (207)
T ss_pred CCCCCCHHHHH
Confidence 89999999655
No 190
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=38.34 E-value=11 Score=30.83 Aligned_cols=12 Identities=42% Similarity=0.407 Sum_probs=10.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|..|||||+.-
T Consensus 5 ~G~~GsGKST~a 16 (150)
T cd02021 5 MGVSGSGKSTVG 16 (150)
T ss_pred EcCCCCCHHHHH
Confidence 489999999875
No 191
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=38.23 E-value=10 Score=41.61 Aligned_cols=10 Identities=70% Similarity=0.757 Sum_probs=9.3
Q ss_pred Cccccccccc
Q psy15014 4 TGSGKTYTMG 13 (286)
Q Consensus 4 TGSGKTyTm~ 13 (286)
+|||||.||+
T Consensus 282 qGSGKTlTm~ 291 (962)
T COG0610 282 QGSGKTLTMF 291 (962)
T ss_pred cCCchHHHHH
Confidence 7999999996
No 192
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=38.11 E-value=10 Score=37.30 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCCcccccccccc---ccCCC--------CCCCCcChHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGT---GFETD--------VSEEMLGIIPRAITHLFEGIQN 41 (286)
Q Consensus 1 YGqTGSGKTyTm~G---~~~~~--------~~~~~~GIiPRal~~LF~~~~~ 41 (286)
||+.|+|||+..-. ..... ......|--++.+.++|.....
T Consensus 185 ~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 185 YGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE 236 (398)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHh
Confidence 89999999998721 00000 0011234456778888877654
No 193
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=37.99 E-value=10 Score=37.83 Aligned_cols=13 Identities=46% Similarity=0.440 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|.+|+|||.|..
T Consensus 101 vG~~GsGKTTtaa 113 (437)
T PRK00771 101 VGLQGSGKTTTAA 113 (437)
T ss_pred ECCCCCcHHHHHH
Confidence 5999999999984
No 194
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=37.89 E-value=10 Score=33.39 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|+|||..+
T Consensus 28 ~G~NGsGKTTLl 39 (204)
T cd03240 28 VGQNGAGKTTII 39 (204)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 195
>PRK14974 cell division protein FtsY; Provisional
Probab=37.73 E-value=11 Score=36.26 Aligned_cols=12 Identities=42% Similarity=0.518 Sum_probs=11.0
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|+|||.|+.
T Consensus 147 G~~GvGKTTtia 158 (336)
T PRK14974 147 GVNGTGKTTTIA 158 (336)
T ss_pred cCCCCCHHHHHH
Confidence 899999999984
No 196
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=37.10 E-value=11 Score=31.62 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.+|+|||...
T Consensus 5 ~G~~G~GKT~l~ 16 (187)
T cd01124 5 SGGPGTGKTTFA 16 (187)
T ss_pred EcCCCCCHHHHH
Confidence 699999999865
No 197
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=37.06 E-value=11 Score=34.22 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=9.9
Q ss_pred CCcccccccccc
Q psy15014 3 QTGSGKTYTMGT 14 (286)
Q Consensus 3 qTGSGKTyTm~G 14 (286)
..|.||||.|+-
T Consensus 13 apGVGKTy~ML~ 24 (211)
T PF02702_consen 13 APGVGKTYAMLQ 24 (211)
T ss_dssp STTSSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 369999999963
No 198
>PRK00300 gmk guanylate kinase; Provisional
Probab=37.01 E-value=12 Score=32.33 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=9.7
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 12 G~sGsGKstl~ 22 (205)
T PRK00300 12 GPSGAGKSTLV 22 (205)
T ss_pred CCCCCCHHHHH
Confidence 89999999765
No 199
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=36.85 E-value=11 Score=31.57 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=0.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|..|||||.-+
T Consensus 5 iG~N~sGKS~il 16 (303)
T PF13304_consen 5 IGPNGSGKSNIL 16 (303)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 699999999887
No 200
>PRK06217 hypothetical protein; Validated
Probab=36.71 E-value=12 Score=31.97 Aligned_cols=11 Identities=36% Similarity=0.250 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+--
T Consensus 8 G~~GsGKSTla 18 (183)
T PRK06217 8 GASGSGTTTLG 18 (183)
T ss_pred CCCCCCHHHHH
Confidence 89999999754
No 201
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=36.67 E-value=12 Score=32.48 Aligned_cols=12 Identities=42% Similarity=0.376 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|||||--.
T Consensus 18 ~G~~GsGKT~l~ 29 (209)
T TIGR02237 18 YGPPGSGKTNIC 29 (209)
T ss_pred ECCCCCCHHHHH
Confidence 699999999765
No 202
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=36.41 E-value=15 Score=35.46 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=11.2
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|.||||||+++.
T Consensus 5 ~g~tGsGKt~~~v 17 (384)
T cd01126 5 FAPTRSGKGVGFV 17 (384)
T ss_pred ecCCCCCCccEEE
Confidence 4899999999874
No 203
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=36.28 E-value=12 Score=34.68 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=27.4
Q ss_pred CCCCcccccccccc------c----------cCCCCCCCCcChHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGT------G----------FETDVSEEMLGIIPRAITHLFEGIQNI 42 (286)
Q Consensus 1 YGqTGSGKTyTm~G------~----------~~~~~~~~~~GIiPRal~~LF~~~~~~ 42 (286)
||.-|||||+-|-- . ++.+......-++...+..|+..+...
T Consensus 26 ~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~ 83 (325)
T PF07693_consen 26 YGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKH 83 (325)
T ss_pred ECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHHh
Confidence 69999999999821 0 111122333567777788888887765
No 204
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=36.23 E-value=12 Score=39.36 Aligned_cols=11 Identities=55% Similarity=0.564 Sum_probs=10.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||||||++|
T Consensus 441 G~tGsGKS~~~ 451 (785)
T TIGR00929 441 GPTGSGKTTLL 451 (785)
T ss_pred CCCCCCHHHHH
Confidence 89999999999
No 205
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.02 E-value=12 Score=35.49 Aligned_cols=12 Identities=42% Similarity=0.338 Sum_probs=10.9
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||+.|.
T Consensus 150 G~t~sGKTt~ln 161 (312)
T COG0630 150 GGTASGKTTLLN 161 (312)
T ss_pred CCCCCCHHHHHH
Confidence 899999999994
No 206
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=35.97 E-value=12 Score=30.96 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+.|||||+..
T Consensus 6 ~G~~GSGKstia 17 (171)
T TIGR02173 6 SGPPGSGKTTVA 17 (171)
T ss_pred ECCCCCCHHHHH
Confidence 599999999776
No 207
>PTZ00424 helicase 45; Provisional
Probab=35.96 E-value=12 Score=35.82 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
++||||||.+.
T Consensus 72 apTGsGKT~~~ 82 (401)
T PTZ00424 72 AQSGTGKTATF 82 (401)
T ss_pred CCCCChHHHHH
Confidence 68999999865
No 208
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=35.96 E-value=14 Score=33.20 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=9.3
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|+.||||||.-.
T Consensus 25 ~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 25 NGPAGTGKTFLAL 37 (205)
T ss_dssp E--TTSSTTHHHH
T ss_pred ECCCCCcHHHHHH
Confidence 3899999998875
No 209
>PRK10536 hypothetical protein; Provisional
Probab=35.94 E-value=13 Score=34.75 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.1
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|..||||||...
T Consensus 80 ~G~aGTGKT~La~ 92 (262)
T PRK10536 80 TGEAGCGKTWISA 92 (262)
T ss_pred ECCCCCCHHHHHH
Confidence 3899999999874
No 210
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=35.76 E-value=13 Score=33.05 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 30 GpNGsGKStll 40 (243)
T cd03272 30 GRNGSGKSNFF 40 (243)
T ss_pred CCCCCCHHHHH
Confidence 89999999998
No 211
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=35.27 E-value=13 Score=31.95 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 9 G~sGsGKsTl~ 19 (186)
T PRK10078 9 GPSGSGKDSLL 19 (186)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 212
>PRK13909 putative recombination protein RecB; Provisional
Probab=35.17 E-value=12 Score=40.57 Aligned_cols=10 Identities=50% Similarity=1.019 Sum_probs=8.2
Q ss_pred Cccccccccc
Q psy15014 4 TGSGKTYTMG 13 (286)
Q Consensus 4 TGSGKTyTm~ 13 (286)
-||||||||.
T Consensus 7 AGsGKT~~L~ 16 (910)
T PRK13909 7 AGSGKTFALS 16 (910)
T ss_pred CCCchhHHHH
Confidence 4899999983
No 213
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=35.16 E-value=12 Score=29.17 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||..|
T Consensus 7 ~G~~~~GKstl~ 18 (161)
T TIGR00231 7 VGDPNVGKSTLL 18 (161)
T ss_pred ECCCCCCHHHHH
Confidence 489999999887
No 214
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=35.09 E-value=11 Score=32.98 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|||||--+
T Consensus 30 ~G~NGsGKS~il 41 (220)
T PF02463_consen 30 VGPNGSGKSNIL 41 (220)
T ss_dssp EESTTSSHHHHH
T ss_pred EcCCCCCHHHHH
Confidence 599999999766
No 215
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.08 E-value=12 Score=27.08 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=11.0
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
+|..|+|||.+...
T Consensus 5 ~g~~G~Gktt~~~~ 18 (99)
T cd01983 5 TGKGGVGKTTLAAN 18 (99)
T ss_pred ECCCCCCHHHHHHH
Confidence 47779999988853
No 216
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.02 E-value=12 Score=34.28 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|||||--|
T Consensus 27 ~G~NGsGKS~ll 38 (270)
T cd03242 27 VGENAQGKTNLL 38 (270)
T ss_pred ECCCCCCHHHHH
Confidence 699999999877
No 217
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=34.99 E-value=13 Score=32.23 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 28 G~nG~GKSTLl 38 (176)
T cd03238 28 GVSGSGKSTLV 38 (176)
T ss_pred CCCCCCHHHHH
Confidence 89999999888
No 218
>PHA00729 NTP-binding motif containing protein
Probab=34.92 E-value=13 Score=34.00 Aligned_cols=13 Identities=38% Similarity=0.281 Sum_probs=11.1
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|.+|+||||-..
T Consensus 23 tG~pGvGKT~LA~ 35 (226)
T PHA00729 23 FGKQGSGKTTYAL 35 (226)
T ss_pred ECCCCCCHHHHHH
Confidence 5999999998763
No 219
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=34.57 E-value=13 Score=37.95 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||...
T Consensus 222 yGPPGTGKT~LA 233 (512)
T TIGR03689 222 YGPPGCGKTLIA 233 (512)
T ss_pred ECCCCCcHHHHH
Confidence 899999999765
No 220
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=34.21 E-value=13 Score=34.65 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=10.7
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
.+||+|||.+.+-
T Consensus 34 apTGtGKTl~~L~ 46 (289)
T smart00488 34 SPTGTGKTLSLLC 46 (289)
T ss_pred CCCCcchhHHHHH
Confidence 3799999998853
No 221
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=34.21 E-value=13 Score=34.65 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=10.7
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
.+||+|||.+.+-
T Consensus 34 apTGtGKTl~~L~ 46 (289)
T smart00489 34 SPTGTGKTLSLLC 46 (289)
T ss_pred CCCCcchhHHHHH
Confidence 3799999998853
No 222
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=34.16 E-value=15 Score=34.91 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||||||---
T Consensus 11 GpTasGKS~LA 21 (300)
T PRK14729 11 GPTAVGKSNIL 21 (300)
T ss_pred CCCccCHHHHH
Confidence 99999999754
No 223
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=34.14 E-value=13 Score=32.44 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=9.2
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|..||||||.+.
T Consensus 6 ~G~pGsGKS~~av 18 (193)
T PF05707_consen 6 TGKPGSGKSYYAV 18 (193)
T ss_dssp E--TTSSHHHHHH
T ss_pred EcCCCCcHhHHHH
Confidence 3899999999774
No 224
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=34.13 E-value=14 Score=34.37 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=11.3
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|++|+|||-+|.
T Consensus 39 ~G~~GtGKT~li~ 51 (272)
T PF12775_consen 39 VGPSGTGKTSLIQ 51 (272)
T ss_dssp ESSTTSSHHHHHH
T ss_pred ECCCCCchhHHHH
Confidence 3999999999884
No 225
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=33.97 E-value=14 Score=35.75 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|||||.++
T Consensus 34 lGpSGaGKsTlL 45 (345)
T COG1118 34 LGPSGAGKSTLL 45 (345)
T ss_pred ECCCCCcHHHHH
Confidence 699999999987
No 226
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=33.92 E-value=14 Score=40.16 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=11.1
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.||||||++|
T Consensus 481 ~G~TGSGKS~l~ 492 (893)
T TIGR03744 481 LGPTGAGKSATL 492 (893)
T ss_pred ECCCCCCHHHHH
Confidence 399999999999
No 227
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=33.88 E-value=14 Score=35.81 Aligned_cols=12 Identities=50% Similarity=0.423 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.||||||++|
T Consensus 147 ~G~TGsGKT~iL 158 (345)
T PRK11784 147 GGNTGSGKTELL 158 (345)
T ss_pred CCCCcccHHHHH
Confidence 389999999888
No 228
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=33.76 E-value=13 Score=32.60 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 28 ~G~nGsGKStll 39 (197)
T cd03278 28 VGPNGSGKSNII 39 (197)
T ss_pred ECCCCCCHHHHH
Confidence 499999999888
No 229
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.74 E-value=13 Score=41.31 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=22.7
Q ss_pred hhh-cccCCCccccccccCCCCCccccccCCCCceEEEcCCCcEE
Q psy15014 161 LAS-LNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIY 204 (286)
Q Consensus 161 ~~~-~~~~~~~~~~~~dLl~~~~~~~~~~~~~~l~i~e~~~~~v~ 204 (286)
+|+ .|.-+..+..+...|..... ...+-+.-|++..||
T Consensus 301 LVDEFQDTd~~Q~~il~~L~~~~~------~~~L~~VGDpKQSIY 339 (1087)
T TIGR00609 301 LIDEFQDTDPQQYRIFSKLFIAQK------TTSLFLIGDPKQAIY 339 (1087)
T ss_pred EEECCcCCCHHHHHHHHHHHhCCC------CCeEEEEECCccccc
Confidence 355 56556656555555542210 136888888888887
No 230
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.73 E-value=14 Score=36.91 Aligned_cols=12 Identities=50% Similarity=0.601 Sum_probs=11.0
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|+|||.|+.
T Consensus 230 GptGvGKTTtaa 241 (432)
T PRK12724 230 GPTGSGKTTSIA 241 (432)
T ss_pred CCCCCCHHHHHH
Confidence 899999999984
No 231
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.64 E-value=14 Score=38.04 Aligned_cols=12 Identities=50% Similarity=0.598 Sum_probs=10.9
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||+|||+|+.
T Consensus 357 GPtGvGKTTtaa 368 (559)
T PRK12727 357 GPTGAGKTTTIA 368 (559)
T ss_pred CCCCCCHHHHHH
Confidence 899999999983
No 232
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=33.45 E-value=15 Score=33.93 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=10.3
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||..+.
T Consensus 20 G~sGSGKT~li~ 31 (241)
T PF04665_consen 20 GKSGSGKTTLIK 31 (241)
T ss_pred CCCCCCHHHHHH
Confidence 899999998763
No 233
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=33.41 E-value=14 Score=31.46 Aligned_cols=11 Identities=64% Similarity=0.761 Sum_probs=9.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
++||+|||.+.
T Consensus 43 ~~TG~GKT~~~ 53 (203)
T cd00268 43 AQTGSGKTAAF 53 (203)
T ss_pred CCCCCcHHHHH
Confidence 68999999874
No 234
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=33.25 E-value=15 Score=34.33 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.+|
T Consensus 26 G~NGaGKSTLl 36 (302)
T TIGR01188 26 GPNGAGKTTTI 36 (302)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 235
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=33.16 E-value=15 Score=26.56 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=9.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|||||..+
T Consensus 6 G~~gsGKst~~ 16 (69)
T cd02019 6 GGSGSGKSTVA 16 (69)
T ss_pred CCCCCCHHHHH
Confidence 88999997665
No 236
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=33.07 E-value=15 Score=32.80 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+.+
T Consensus 40 G~~GsGKTTl~ 50 (229)
T PRK09270 40 GPPGAGKSTLA 50 (229)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 237
>PRK00131 aroK shikimate kinase; Reviewed
Probab=33.05 E-value=14 Score=30.41 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|..|||||+.-
T Consensus 10 ~G~~GsGKstla 21 (175)
T PRK00131 10 IGFMGAGKSTIG 21 (175)
T ss_pred EcCCCCCHHHHH
Confidence 499999999874
No 238
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=32.95 E-value=15 Score=31.91 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 34 G~nGsGKSTLl 44 (211)
T cd03225 34 GPNGSGKSTLL 44 (211)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 239
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.88 E-value=15 Score=32.24 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 37 G~nGsGKSTLl 47 (220)
T cd03293 37 GPSGCGKSTLL 47 (220)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 240
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=32.79 E-value=13 Score=36.31 Aligned_cols=12 Identities=50% Similarity=0.540 Sum_probs=9.4
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.+|.
T Consensus 22 G~~GsGKT~~i~ 33 (386)
T PF10412_consen 22 GATGSGKTQAIR 33 (386)
T ss_dssp E-TTSSHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 899999998764
No 241
>KOG2373|consensus
Probab=32.74 E-value=18 Score=35.66 Aligned_cols=12 Identities=50% Similarity=0.504 Sum_probs=10.5
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+||||||.-|.
T Consensus 280 GpTGsGKTTFls 291 (514)
T KOG2373|consen 280 GPTGSGKTTFLS 291 (514)
T ss_pred cCCCCCceeEeh
Confidence 899999998773
No 242
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=32.72 E-value=16 Score=31.56 Aligned_cols=12 Identities=42% Similarity=0.338 Sum_probs=10.3
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||+...
T Consensus 6 G~sgsGKttla~ 17 (179)
T cd02028 6 GPSGSGKTTFAK 17 (179)
T ss_pred CCCCCCHHHHHH
Confidence 889999998773
No 243
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=32.71 E-value=14 Score=32.39 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|+|||..|
T Consensus 27 ~G~NGsGKStll 38 (198)
T cd03276 27 VGNNGSGKSAIL 38 (198)
T ss_pred ECCCCCcHHHHH
Confidence 599999999777
No 244
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=32.53 E-value=14 Score=41.50 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=9.3
Q ss_pred CCceEEEcCCCcEE
Q psy15014 191 SNIKIHEDSGHSIY 204 (286)
Q Consensus 191 ~~l~i~e~~~~~v~ 204 (286)
..+-+.-|++..||
T Consensus 407 ~~l~~VGDpkQsIY 420 (1181)
T PRK10876 407 TALLLIGDPKQAIY 420 (1181)
T ss_pred CeEEEEeCCccccc
Confidence 35667777776666
No 245
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.52 E-value=15 Score=32.44 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 38 G~nGsGKSTLl 48 (233)
T cd03258 38 GRSGAGKSTLI 48 (233)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 246
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=32.42 E-value=16 Score=34.42 Aligned_cols=11 Identities=45% Similarity=0.465 Sum_probs=9.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
++||||||...
T Consensus 6 apTGsGKT~~~ 16 (358)
T TIGR01587 6 APTGYGKTEAA 16 (358)
T ss_pred eCCCCCHHHHH
Confidence 68999999764
No 247
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.39 E-value=14 Score=34.42 Aligned_cols=12 Identities=42% Similarity=0.445 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+|++|||.+|
T Consensus 199 ~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 199 YGQSSSGKTTAL 210 (286)
T ss_pred EeCCCCCHHHHH
Confidence 799999999988
No 248
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=32.17 E-value=16 Score=31.59 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 31 G~nGsGKSTLl 41 (206)
T TIGR03608 31 GESGSGKSTLL 41 (206)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 249
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=32.17 E-value=12 Score=31.80 Aligned_cols=13 Identities=38% Similarity=0.197 Sum_probs=11.4
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|++|+|||+.+.
T Consensus 38 ~g~~g~GKT~~~~ 50 (193)
T PF13481_consen 38 AGPPGSGKTTLAL 50 (193)
T ss_dssp EECSTSSHHHHHH
T ss_pred EeCCCCCHHHHHH
Confidence 5899999999884
No 250
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=31.96 E-value=16 Score=31.30 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 25 G~nGsGKSTLl 35 (190)
T TIGR01166 25 GANGAGKSTLL 35 (190)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 251
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=31.94 E-value=16 Score=29.00 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|+|||..+
T Consensus 10 G~~g~GKttl~ 20 (168)
T cd04163 10 GRPNVGKSTLL 20 (168)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 252
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=31.87 E-value=16 Score=39.14 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=11.1
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|+||||||+.|
T Consensus 447 ~G~tGsGKS~l~ 458 (811)
T PRK13873 447 VGPTGAGKSVLL 458 (811)
T ss_pred ECCCCCCHHHHH
Confidence 499999999999
No 253
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=31.45 E-value=16 Score=31.86 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 37 G~nGsGKSTLl 47 (218)
T cd03255 37 GPSGSGKSTLL 47 (218)
T ss_pred cCCCCCHHHHH
Confidence 89999999876
No 254
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=31.43 E-value=16 Score=30.68 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=10.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..+
T Consensus 7 ~G~~GsGKsTl~ 18 (180)
T TIGR03263 7 SGPSGVGKSTLV 18 (180)
T ss_pred ECCCCCCHHHHH
Confidence 399999999865
No 255
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.40 E-value=16 Score=35.63 Aligned_cols=11 Identities=55% Similarity=0.800 Sum_probs=9.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
++||||||.+.
T Consensus 52 ApTGsGKTla~ 62 (423)
T PRK04837 52 AQTGTGKTMAF 62 (423)
T ss_pred CCCCchHHHHH
Confidence 58999999864
No 256
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.37 E-value=16 Score=30.62 Aligned_cols=13 Identities=38% Similarity=0.358 Sum_probs=11.1
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|.+|+|||.++.
T Consensus 6 ~G~~G~GKTt~~~ 18 (173)
T cd03115 6 VGLQGVGKTTTAA 18 (173)
T ss_pred ECCCCCCHHHHHH
Confidence 3899999999874
No 257
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=31.33 E-value=16 Score=30.01 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||||||.-+
T Consensus 6 GpsGsGKstl~ 16 (137)
T cd00071 6 GPSGVGKSTLL 16 (137)
T ss_pred CCCCCCHHHHH
Confidence 89999999755
No 258
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=31.31 E-value=16 Score=31.71 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 35 G~nGsGKSTLl 45 (214)
T TIGR02673 35 GPSGAGKTTLL 45 (214)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 259
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=31.09 E-value=18 Score=39.14 Aligned_cols=10 Identities=70% Similarity=1.155 Sum_probs=8.7
Q ss_pred CCcccccccc
Q psy15014 3 QTGSGKTYTM 12 (286)
Q Consensus 3 qTGSGKTyTm 12 (286)
.||+|||||-
T Consensus 82 ETGTGKTy~Y 91 (985)
T COG3587 82 ETGTGKTYTY 91 (985)
T ss_pred ecCCCceeeH
Confidence 4999999986
No 260
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.08 E-value=17 Score=31.56 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 33 G~nGsGKSTLl 43 (205)
T cd03226 33 GKNGAGKTTLA 43 (205)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 261
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=31.04 E-value=14 Score=29.40 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 18 G~nGsGKStLl 28 (137)
T PF00005_consen 18 GPNGSGKSTLL 28 (137)
T ss_dssp ESTTSSHHHHH
T ss_pred ccCCCccccce
Confidence 89999999877
No 262
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=30.85 E-value=17 Score=31.74 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 36 G~nGsGKSTLl 46 (216)
T TIGR00960 36 GHSGAGKSTFL 46 (216)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 263
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.72 E-value=17 Score=32.18 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 34 G~nGsGKSTLl 44 (241)
T cd03256 34 GPSGAGKSTLL 44 (241)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 264
>PRK04195 replication factor C large subunit; Provisional
Probab=30.66 E-value=16 Score=36.60 Aligned_cols=12 Identities=33% Similarity=0.260 Sum_probs=11.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||+..
T Consensus 45 ~GppG~GKTtla 56 (482)
T PRK04195 45 YGPPGVGKTSLA 56 (482)
T ss_pred ECCCCCCHHHHH
Confidence 799999999887
No 265
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=30.59 E-value=17 Score=36.08 Aligned_cols=12 Identities=50% Similarity=0.542 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||+..
T Consensus 114 ~Gp~GtGKT~lA 125 (412)
T PRK05342 114 IGPTGSGKTLLA 125 (412)
T ss_pred EcCCCCCHHHHH
Confidence 599999999866
No 266
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.51 E-value=16 Score=35.75 Aligned_cols=12 Identities=33% Similarity=0.307 Sum_probs=11.1
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||+..
T Consensus 42 ~GppGtGKTtLA 53 (413)
T PRK13342 42 WGPPGTGKTTLA 53 (413)
T ss_pred ECCCCCCHHHHH
Confidence 799999999887
No 267
>PRK08118 topology modulation protein; Reviewed
Probab=30.49 E-value=18 Score=30.81 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=9.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|||||+-.
T Consensus 8 G~~GsGKSTla 18 (167)
T PRK08118 8 GSGGSGKSTLA 18 (167)
T ss_pred CCCCCCHHHHH
Confidence 89999999543
No 268
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=30.35 E-value=16 Score=38.80 Aligned_cols=13 Identities=31% Similarity=0.215 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||++|+|||++..
T Consensus 58 ~GPpGtGKTTLA~ 70 (725)
T PRK13341 58 YGPPGVGKTTLAR 70 (725)
T ss_pred ECCCCCCHHHHHH
Confidence 7999999998873
No 269
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=30.29 E-value=17 Score=39.21 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|+||||||+.|
T Consensus 494 ~G~tGsGKS~l~ 505 (852)
T PRK13891 494 FGPTGAGKSTHL 505 (852)
T ss_pred ECCCCCCHHHHH
Confidence 399999999999
No 270
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.27 E-value=17 Score=31.52 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 32 G~nGsGKSTLl 42 (211)
T cd03264 32 GPNGAGKTTLM 42 (211)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 271
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=30.19 E-value=17 Score=36.65 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|+||||..
T Consensus 200 ~GppGtGKT~lA 211 (459)
T PRK11331 200 QGPPGVGKTFVA 211 (459)
T ss_pred ECCCCCCHHHHH
Confidence 799999999877
No 272
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.94 E-value=18 Score=31.73 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 33 G~nGsGKSTLl 43 (220)
T cd03265 33 GPNGAGKTTTI 43 (220)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 273
>CHL00195 ycf46 Ycf46; Provisional
Probab=29.87 E-value=17 Score=36.86 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCCCcccccccccc---ccC--------CCCCCCCcChHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGT---GFE--------TDVSEEMLGIIPRAITHLFEGIQN 41 (286)
Q Consensus 1 YGqTGSGKTyTm~G---~~~--------~~~~~~~~GIiPRal~~LF~~~~~ 41 (286)
||+.|+|||.+.-- ... ...-..-.|--.+.+..+|+..+.
T Consensus 265 ~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 265 VGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEA 316 (489)
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHh
Confidence 89999999987611 000 000112345556778888877654
No 274
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.81 E-value=18 Score=30.75 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-|
T Consensus 33 G~nGsGKSTLl 43 (178)
T cd03229 33 GPSGSGKSTLL 43 (178)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 275
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=29.76 E-value=18 Score=35.63 Aligned_cols=11 Identities=55% Similarity=0.724 Sum_probs=9.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
++||||||.+.
T Consensus 48 a~TGsGKT~a~ 58 (460)
T PRK11776 48 AKTGSGKTAAF 58 (460)
T ss_pred CCCCCcHHHHH
Confidence 68999999763
No 276
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=29.76 E-value=18 Score=33.94 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|+.|+|||.+|
T Consensus 39 lGpNGaGKSTLl 50 (306)
T PRK13537 39 LGPNGAGKTTTL 50 (306)
T ss_pred ECCCCCCHHHHH
Confidence 389999999988
No 277
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=29.67 E-value=20 Score=38.58 Aligned_cols=11 Identities=55% Similarity=0.552 Sum_probs=9.8
Q ss_pred CCccccccccc
Q psy15014 3 QTGSGKTYTMG 13 (286)
Q Consensus 3 qTGSGKTyTm~ 13 (286)
.||+|||||-+
T Consensus 193 ATGTGKTrTAi 203 (875)
T COG4096 193 ATGTGKTRTAI 203 (875)
T ss_pred ecCCCcceeHH
Confidence 59999999986
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=29.56 E-value=18 Score=31.89 Aligned_cols=11 Identities=45% Similarity=0.395 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||||||.+.
T Consensus 7 G~tGsGKSs~~ 17 (212)
T PF04548_consen 7 GKTGSGKSSLG 17 (212)
T ss_dssp CSTTSSHHHHH
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 279
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=29.48 E-value=17 Score=32.78 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|||||..|
T Consensus 28 ~G~NGsGKStll 39 (247)
T cd03275 28 IGPNGSGKSNLM 39 (247)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 280
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=29.48 E-value=19 Score=32.51 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..+
T Consensus 31 vG~NGsGKStll 42 (251)
T cd03273 31 TGLNGSGKSNIL 42 (251)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 281
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=29.39 E-value=20 Score=30.13 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|||||+..
T Consensus 10 G~~GsGKsTl~ 20 (188)
T TIGR01360 10 GGPGSGKGTQC 20 (188)
T ss_pred CCCCCCHHHHH
Confidence 89999999976
No 282
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=29.28 E-value=17 Score=33.24 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|||||.-+
T Consensus 36 ~G~nGsGKSTL~ 47 (235)
T COG1122 36 IGPNGSGKSTLL 47 (235)
T ss_pred ECCCCCCHHHHH
Confidence 599999999877
No 283
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=29.25 E-value=18 Score=38.15 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||+.+
T Consensus 218 ~GppGtGKT~la 229 (733)
T TIGR01243 218 YGPPGTGKTLLA 229 (733)
T ss_pred ECCCCCChHHHH
Confidence 799999999876
No 284
>PRK04040 adenylate kinase; Provisional
Probab=29.16 E-value=17 Score=31.76 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|..|||||+..
T Consensus 8 ~G~pG~GKtt~~ 19 (188)
T PRK04040 8 TGVPGVGKTTVL 19 (188)
T ss_pred EeCCCCCHHHHH
Confidence 599999999876
No 285
>PRK04296 thymidine kinase; Provisional
Probab=29.14 E-value=15 Score=32.01 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=11.4
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
||..|+|||..+.+
T Consensus 8 tG~~GsGKTT~~l~ 21 (190)
T PRK04296 8 YGAMNSGKSTELLQ 21 (190)
T ss_pred ECCCCCHHHHHHHH
Confidence 69999999977653
No 286
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=29.11 E-value=19 Score=34.64 Aligned_cols=12 Identities=50% Similarity=0.506 Sum_probs=10.5
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.||||||.+|.
T Consensus 185 G~tGsGKTTll~ 196 (340)
T TIGR03819 185 GGTGSGKTTLLS 196 (340)
T ss_pred CCCCCCHHHHHH
Confidence 899999998773
No 287
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=29.08 E-value=19 Score=33.61 Aligned_cols=11 Identities=45% Similarity=0.601 Sum_probs=10.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+.|+|||.+|
T Consensus 35 G~NGaGKTTLl 45 (301)
T TIGR03522 35 GPNGAGKSTTM 45 (301)
T ss_pred CCCCCCHHHHH
Confidence 89999999998
No 288
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=29.05 E-value=19 Score=38.80 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=10.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||||||++|
T Consensus 456 G~sGsGKS~l~ 466 (844)
T PRK13721 456 GTSGAGKTGLI 466 (844)
T ss_pred cCCCCCHHHHH
Confidence 89999999999
No 289
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=29.05 E-value=19 Score=31.75 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=21.2
Q ss_pred EEEeccEEEEcCCHHHHHHHHHHHHhcCCcccCC
Q psy15014 203 IYVTGATSKSIRSAQEAMNALRQGALSRTTASTQ 236 (286)
Q Consensus 203 v~v~gl~~~~V~S~eea~~lL~~G~~~R~~~sT~ 236 (286)
+.+.+-..+...+.+++.+++..-..+|.+-.|.
T Consensus 174 ~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (213)
T PRK15177 174 GVLLHGKITMCEDLAQATALFEQYQSNQATIQTE 207 (213)
T ss_pred EEEECCeEEEeCCHHHHHHHHHHHHHhhhhhccc
Confidence 4444445556677777777777777777655543
No 290
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=29.04 E-value=19 Score=31.23 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 33 G~nGsGKSTLl 43 (213)
T cd03262 33 GPSGSGKSTLL 43 (213)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 291
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=29.03 E-value=33 Score=37.99 Aligned_cols=12 Identities=42% Similarity=0.470 Sum_probs=10.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.||||||..+
T Consensus 36 ~G~tGaGKStil 47 (1047)
T PRK10246 36 TGPTGAGKTTLL 47 (1047)
T ss_pred ECCCCCCHHHHH
Confidence 499999999865
No 292
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.99 E-value=18 Score=31.46 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 32 G~nGsGKSTLl 42 (177)
T cd03222 32 GPNGTGKTTAV 42 (177)
T ss_pred CCCCChHHHHH
Confidence 89999999877
No 293
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=28.97 E-value=19 Score=31.92 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 42 G~nGsGKSTLl 52 (233)
T PRK11629 42 GSSGSGKSTLL 52 (233)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 294
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=28.90 E-value=19 Score=33.56 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 37 G~NGaGKSTLl 47 (303)
T TIGR01288 37 GPNGAGKSTIA 47 (303)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 295
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=28.86 E-value=18 Score=35.92 Aligned_cols=12 Identities=50% Similarity=0.542 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||+..
T Consensus 122 ~GP~GsGKT~lA 133 (413)
T TIGR00382 122 IGPTGSGKTLLA 133 (413)
T ss_pred ECCCCcCHHHHH
Confidence 599999999877
No 296
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.80 E-value=19 Score=31.87 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 33 G~nGsGKSTLl 43 (235)
T cd03261 33 GPSGSGKSTLL 43 (235)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 297
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.76 E-value=19 Score=31.25 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 34 G~nGsGKSTLl 44 (204)
T PRK13538 34 GPNGAGKTSLL 44 (204)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 298
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.71 E-value=19 Score=31.29 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=9.8
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 33 G~nGsGKSTLl 43 (213)
T cd03259 33 GPSGCGKTTLL 43 (213)
T ss_pred CCCCCCHHHHH
Confidence 89999999766
No 299
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.61 E-value=20 Score=34.73 Aligned_cols=11 Identities=45% Similarity=0.474 Sum_probs=10.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|+|||.|+
T Consensus 146 GVNG~GKTTTI 156 (340)
T COG0552 146 GVNGVGKTTTI 156 (340)
T ss_pred ecCCCchHhHH
Confidence 78999999999
No 300
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=21 Score=35.21 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCCCcccccccc--------------ccccCCCCCCCCcChHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTM--------------GTGFETDVSEEMLGIIPRAITHLFEGIQNI 42 (286)
Q Consensus 1 YGqTGSGKTyTm--------------~G~~~~~~~~~~~GIiPRal~~LF~~~~~~ 42 (286)
||+.|+|||--- .|. +.-.---|==+|.+++||....+.
T Consensus 191 YGPPGTGKTLLAkAVA~~T~AtFIrvvgS---ElVqKYiGEGaRlVRelF~lArek 243 (406)
T COG1222 191 YGPPGTGKTLLAKAVANQTDATFIRVVGS---ELVQKYIGEGARLVRELFELAREK 243 (406)
T ss_pred eCCCCCcHHHHHHHHHhccCceEEEeccH---HHHHHHhccchHHHHHHHHHHhhc
Confidence 999999998543 110 000011233389999999998876
No 301
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=28.49 E-value=20 Score=31.58 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 33 G~nGsGKSTLl 43 (227)
T cd03260 33 GPSGCGKSTLL 43 (227)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 302
>PRK06696 uridine kinase; Validated
Probab=28.40 E-value=21 Score=31.68 Aligned_cols=11 Identities=45% Similarity=0.196 Sum_probs=9.7
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+..
T Consensus 29 G~sgsGKSTlA 39 (223)
T PRK06696 29 GITASGKTTFA 39 (223)
T ss_pred CCCCCCHHHHH
Confidence 89999999865
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=28.35 E-value=20 Score=31.40 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|||||..+
T Consensus 29 G~~gsGKTTli 39 (207)
T TIGR00073 29 SSPGSGKTTLI 39 (207)
T ss_pred CCCCCCHHHHH
Confidence 88999999977
No 304
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=28.26 E-value=20 Score=31.34 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 37 G~nGsGKSTLl 47 (220)
T cd03245 37 GRVGSGKSTLL 47 (220)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 305
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=28.22 E-value=20 Score=33.81 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.8
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||..+.
T Consensus 13 G~~GsGKtt~~~ 24 (288)
T PRK05416 13 GLSGAGKSVALR 24 (288)
T ss_pred CCCCCcHHHHHH
Confidence 899999999983
No 306
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=28.06 E-value=21 Score=31.45 Aligned_cols=12 Identities=42% Similarity=0.387 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|||||.-+
T Consensus 25 ~G~~GsGKT~l~ 36 (235)
T cd01123 25 FGEFGSGKTQLC 36 (235)
T ss_pred ECCCCCCHHHHH
Confidence 699999999876
No 307
>PHA02653 RNA helicase NPH-II; Provisional
Probab=28.04 E-value=24 Score=37.32 Aligned_cols=11 Identities=45% Similarity=0.380 Sum_probs=9.4
Q ss_pred CCCCccccccc
Q psy15014 1 MLQTGSGKTYT 11 (286)
Q Consensus 1 YGqTGSGKTyT 11 (286)
.|+||||||.-
T Consensus 185 ~A~TGSGKTtq 195 (675)
T PHA02653 185 TGGTGVGKTSQ 195 (675)
T ss_pred ECCCCCCchhH
Confidence 38999999975
No 308
>PRK07667 uridine kinase; Provisional
Probab=27.94 E-value=21 Score=30.98 Aligned_cols=11 Identities=36% Similarity=0.199 Sum_probs=9.7
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+..
T Consensus 24 G~~gsGKStla 34 (193)
T PRK07667 24 GLSRSGKTTFV 34 (193)
T ss_pred CCCCCCHHHHH
Confidence 89999999865
No 309
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=27.88 E-value=20 Score=31.04 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-|
T Consensus 34 G~nGsGKSTLl 44 (214)
T cd03292 34 GPSGAGKSTLL 44 (214)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 310
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.87 E-value=20 Score=31.06 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-|
T Consensus 33 G~nGsGKSTLl 43 (210)
T cd03269 33 GPNGAGKTTTI 43 (210)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 311
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=27.83 E-value=20 Score=31.14 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 32 G~nGsGKSTLl 42 (213)
T cd03235 32 GPNGAGKSTLL 42 (213)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 312
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.75 E-value=21 Score=31.20 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-+
T Consensus 30 G~nGsGKSTLl 40 (214)
T cd03297 30 GASGAGKSTLL 40 (214)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 313
>PRK06762 hypothetical protein; Provisional
Probab=27.72 E-value=22 Score=29.61 Aligned_cols=11 Identities=45% Similarity=0.447 Sum_probs=9.1
Q ss_pred CCCCccccccc
Q psy15014 1 MLQTGSGKTYT 11 (286)
Q Consensus 1 YGqTGSGKTyT 11 (286)
.|..|||||+-
T Consensus 8 ~G~~GsGKST~ 18 (166)
T PRK06762 8 RGNSGSGKTTI 18 (166)
T ss_pred ECCCCCCHHHH
Confidence 38999999973
No 314
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=27.68 E-value=21 Score=31.22 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 35 G~nGsGKSTLl 45 (220)
T cd03263 35 GHNGAGKTTTL 45 (220)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 315
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=27.66 E-value=21 Score=34.45 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 36 ~GpsGsGKSTLL 47 (353)
T TIGR03265 36 LGPSGCGKTTLL 47 (353)
T ss_pred ECCCCCCHHHHH
Confidence 499999999988
No 316
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=27.64 E-value=18 Score=37.84 Aligned_cols=11 Identities=55% Similarity=0.555 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.|+
T Consensus 92 GeSGsGKTe~~ 102 (689)
T PF00063_consen 92 GESGSGKTETS 102 (689)
T ss_dssp ESTTSSHHHHH
T ss_pred cccccccccch
Confidence 89999999996
No 317
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=27.50 E-value=21 Score=34.22 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+.|+|||.+|
T Consensus 74 GpNGaGKSTLl 84 (340)
T PRK13536 74 GPNGAGKSTIA 84 (340)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 318
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=27.44 E-value=19 Score=38.47 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||||||..|
T Consensus 432 ~G~tGsGKS~l~ 443 (789)
T PRK13853 432 FGPIGRGKTTLM 443 (789)
T ss_pred ECCCCCCHHHHH
Confidence 499999999998
No 319
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.41 E-value=20 Score=37.64 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=11.3
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||.++
T Consensus 116 ~GP~GsGKTTl~ 127 (637)
T TIGR00602 116 TGPSGCGKSTTI 127 (637)
T ss_pred ECCCCCCHHHHH
Confidence 799999999988
No 320
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.40 E-value=22 Score=34.12 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|||||..+
T Consensus 30 FG~SGsGKTsli 41 (352)
T COG4148 30 FGPSGSGKTSLI 41 (352)
T ss_pred ecCCCCChhhHH
Confidence 699999999876
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=27.38 E-value=21 Score=30.38 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 32 G~nGsGKStLl 42 (180)
T cd03214 32 GPNGAGKSTLL 42 (180)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 322
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=27.36 E-value=22 Score=34.65 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=22.6
Q ss_pred CCCCccccccccccccCC-CCCCCCcChHHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGTGFET-DVSEEMLGIIPRAITHLFEGIQNIA 43 (286)
Q Consensus 1 YGqTGSGKTyTm~G~~~~-~~~~~~~GIiPRal~~LF~~~~~~~ 43 (286)
||.-|.|||+-|--=++. +.....+-=.-..+.++++.+....
T Consensus 68 ~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 68 WGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR 111 (362)
T ss_pred ECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh
Confidence 799999999999211100 0001111112345666776666644
No 323
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=27.33 E-value=21 Score=30.74 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+.+
T Consensus 10 G~sGsGKSTl~ 20 (176)
T PRK09825 10 GVSGSGKSLIG 20 (176)
T ss_pred CCCCCCHHHHH
Confidence 89999999976
No 324
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.29 E-value=21 Score=31.74 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 35 G~nGsGKSTLl 45 (239)
T cd03296 35 GPSGSGKTTLL 45 (239)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 325
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=27.27 E-value=21 Score=31.67 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-|
T Consensus 34 G~nGsGKSTLl 44 (236)
T TIGR03864 34 GPNGAGKSTLF 44 (236)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 326
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=27.20 E-value=21 Score=30.08 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=10.1
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|..|||||+.-
T Consensus 5 ~G~pGsGKst~a 16 (183)
T TIGR01359 5 LGGPGSGKGTQC 16 (183)
T ss_pred ECCCCCCHHHHH
Confidence 499999999864
No 327
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=27.19 E-value=21 Score=31.96 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 39 G~nGsGKSTLl 49 (253)
T PRK14242 39 GPSGCGKSTFL 49 (253)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 328
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=27.12 E-value=22 Score=31.25 Aligned_cols=11 Identities=45% Similarity=0.232 Sum_probs=9.7
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+..
T Consensus 6 G~sgsGKTtla 16 (187)
T cd02024 6 GVTNSGKTTLA 16 (187)
T ss_pred CCCCCCHHHHH
Confidence 88999999876
No 329
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=27.06 E-value=22 Score=31.34 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 43 G~nGsGKSTLl 53 (228)
T PRK10584 43 GESGSGKSTLL 53 (228)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 330
>PF13166 AAA_13: AAA domain
Probab=27.04 E-value=22 Score=36.97 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=9.2
Q ss_pred CCCCcccccc
Q psy15014 1 MLQTGSGKTY 10 (286)
Q Consensus 1 YGqTGSGKTy 10 (286)
||..|||||.
T Consensus 22 YG~NGsGKSt 31 (712)
T PF13166_consen 22 YGRNGSGKST 31 (712)
T ss_pred ECCCCCCHHH
Confidence 9999999994
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=27.04 E-value=22 Score=29.40 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|+|||..|
T Consensus 33 G~nGsGKStLl 43 (144)
T cd03221 33 GRNGAGKSTLL 43 (144)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 332
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=27.01 E-value=22 Score=30.93 Aligned_cols=11 Identities=45% Similarity=0.585 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-|
T Consensus 33 G~nGsGKSTLl 43 (213)
T cd03301 33 GPSGCGKTTTL 43 (213)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 333
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.90 E-value=22 Score=31.03 Aligned_cols=11 Identities=45% Similarity=0.504 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 35 G~nGsGKSTLl 45 (207)
T PRK13539 35 GPNGSGKTTLL 45 (207)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 334
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=26.87 E-value=22 Score=31.34 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||.-|
T Consensus 32 ~G~nGsGKSTLl 43 (232)
T cd03218 32 LGPNGAGKTTTF 43 (232)
T ss_pred ECCCCCCHHHHH
Confidence 389999999887
No 335
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=26.80 E-value=22 Score=27.11 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|..|+|||..+
T Consensus 2 iG~~~~GKStl~ 13 (157)
T cd00882 2 VGDSGVGKTSLL 13 (157)
T ss_pred CCcCCCcHHHHH
Confidence 389999999877
No 336
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.74 E-value=40 Score=31.21 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=8.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|+||+.-+
T Consensus 40 GPSGcGKST~L 50 (253)
T COG1117 40 GPSGCGKSTLL 50 (253)
T ss_pred CCCCcCHHHHH
Confidence 78888887544
No 337
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=26.65 E-value=23 Score=35.66 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.5
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
.|++|+||||.-.+
T Consensus 215 lGp~GTGKThla~~ 228 (449)
T TIGR02688 215 LGPKGTGKSYIYNN 228 (449)
T ss_pred ECCCCCCHHHHHHH
Confidence 49999999987743
No 338
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.55 E-value=22 Score=32.83 Aligned_cols=11 Identities=55% Similarity=0.613 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 40 G~nGsGKSTLl 50 (286)
T PRK13646 40 GQTGSGKSTLI 50 (286)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 339
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=26.52 E-value=22 Score=31.37 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||..|
T Consensus 32 ~G~nGsGKSTLl 43 (236)
T cd03219 32 IGPNGAGKTTLF 43 (236)
T ss_pred ECCCCCCHHHHH
Confidence 389999999877
No 340
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=26.51 E-value=21 Score=37.28 Aligned_cols=11 Identities=45% Similarity=0.525 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|+|||+|+
T Consensus 174 GgpGTGKTt~v 184 (615)
T PRK10875 174 GGPGTGKTTTV 184 (615)
T ss_pred eCCCCCHHHHH
Confidence 78999999997
No 341
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=26.47 E-value=20 Score=33.40 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.+|||||..|
T Consensus 117 ~g~~g~GKttl~ 128 (270)
T TIGR02858 117 ISPPQCGKTTLL 128 (270)
T ss_pred EcCCCCCHHHHH
Confidence 489999999988
No 342
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=26.35 E-value=22 Score=32.56 Aligned_cols=12 Identities=33% Similarity=0.302 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.+|+|||...
T Consensus 27 ~G~~GtGKT~lA 38 (262)
T TIGR02640 27 RGPAGTGKTTLA 38 (262)
T ss_pred EcCCCCCHHHHH
Confidence 599999999876
No 343
>PLN02165 adenylate isopentenyltransferase
Probab=26.34 E-value=24 Score=34.12 Aligned_cols=11 Identities=45% Similarity=0.410 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||||||...
T Consensus 50 GPTGSGKStLA 60 (334)
T PLN02165 50 GATGSGKSRLS 60 (334)
T ss_pred CCCCCcHHHHH
Confidence 99999999776
No 344
>PLN02796 D-glycerate 3-kinase
Probab=26.33 E-value=22 Score=34.54 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||+.+
T Consensus 107 G~sGSGKSTLa 117 (347)
T PLN02796 107 APQGCGKTTLV 117 (347)
T ss_pred CCCCCcHHHHH
Confidence 88999999986
No 345
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.21 E-value=22 Score=34.25 Aligned_cols=12 Identities=33% Similarity=0.244 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||.++
T Consensus 44 ~Gp~G~GKTtla 55 (363)
T PRK14961 44 SGTRGVGKTTIA 55 (363)
T ss_pred ecCCCCCHHHHH
Confidence 799999999876
No 346
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=26.20 E-value=23 Score=30.98 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-|
T Consensus 38 G~nGsGKSTLl 48 (221)
T TIGR02211 38 GSSGSGKSTLL 48 (221)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 347
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=26.20 E-value=23 Score=31.02 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-|
T Consensus 38 G~nGsGKSTLl 48 (228)
T cd03257 38 GESGSGKSTLA 48 (228)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 348
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=26.15 E-value=23 Score=31.21 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 32 ~G~nGsGKSTLl 43 (230)
T TIGR03410 32 LGRNGVGKTTLL 43 (230)
T ss_pred ECCCCCCHHHHH
Confidence 389999999877
No 349
>PHA02244 ATPase-like protein
Probab=26.14 E-value=22 Score=34.98 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||+-.
T Consensus 125 ~GppGtGKTtLA 136 (383)
T PHA02244 125 KGGAGSGKNHIA 136 (383)
T ss_pred ECCCCCCHHHHH
Confidence 599999999876
No 350
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=26.09 E-value=24 Score=32.55 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-+
T Consensus 35 GpSGSGKSTlL 45 (240)
T COG1126 35 GPSGSGKSTLL 45 (240)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 351
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=26.06 E-value=28 Score=32.86 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+.|.|||.|.
T Consensus 35 G~NGAGKTTtf 45 (300)
T COG4152 35 GPNGAGKTTTF 45 (300)
T ss_pred cCCCCCccchH
Confidence 89999999997
No 352
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.04 E-value=24 Score=38.27 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=10.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|+||||||.-|
T Consensus 31 ~G~nGsGKSSIl 42 (908)
T COG0419 31 VGPNGAGKSSIL 42 (908)
T ss_pred ECCCCCcHHHHH
Confidence 499999998655
No 353
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=26.04 E-value=20 Score=27.86 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|+|||.-+
T Consensus 5 iG~~~~GKSTli 16 (116)
T PF01926_consen 5 IGRPNVGKSTLI 16 (116)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 389999999877
No 354
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=25.95 E-value=23 Score=31.66 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 34 G~nGsGKSTLl 44 (247)
T TIGR00972 34 GPSGCGKSTLL 44 (247)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 355
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=25.91 E-value=23 Score=28.25 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|+|||..+
T Consensus 6 G~~g~GKTtL~ 16 (170)
T cd01876 6 GRSNVGKSSLI 16 (170)
T ss_pred cCCCCCHHHHH
Confidence 89999999877
No 356
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=25.90 E-value=25 Score=36.96 Aligned_cols=11 Identities=45% Similarity=0.546 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.|+
T Consensus 93 GESGsGKTet~ 103 (653)
T cd01379 93 GESGSGKTESA 103 (653)
T ss_pred cCCCCCchHHH
Confidence 89999999998
No 357
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=25.83 E-value=23 Score=34.11 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=10.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 39 GpsGsGKSTLL 49 (351)
T PRK11432 39 GPSGCGKTTVL 49 (351)
T ss_pred CCCCCcHHHHH
Confidence 89999999998
No 358
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=25.81 E-value=23 Score=36.77 Aligned_cols=11 Identities=45% Similarity=0.525 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|-.|||||||+
T Consensus 167 GgpGTGKTt~v 177 (586)
T TIGR01447 167 GGPGTGKTTTV 177 (586)
T ss_pred cCCCCCHHHHH
Confidence 78899999997
No 359
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.72 E-value=23 Score=35.34 Aligned_cols=11 Identities=55% Similarity=0.449 Sum_probs=10.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|+|||.|.
T Consensus 107 G~~GvGKTTta 117 (429)
T TIGR01425 107 GLQGSGKTTTC 117 (429)
T ss_pred CCCCCCHHHHH
Confidence 89999999998
No 360
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=25.72 E-value=23 Score=30.84 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-|
T Consensus 33 G~nGsGKSTLl 43 (222)
T cd03224 33 GRNGAGKTTLL 43 (222)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 361
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=25.58 E-value=26 Score=26.90 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|+|||.-+
T Consensus 6 G~~g~GKTsLi 16 (119)
T PF08477_consen 6 GDSGVGKTSLI 16 (119)
T ss_dssp CSTTSSHHHHH
T ss_pred CcCCCCHHHHH
Confidence 89999999877
No 362
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.47 E-value=24 Score=32.57 Aligned_cols=11 Identities=45% Similarity=0.552 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 44 G~nGsGKSTLl 54 (289)
T PRK13645 44 GTTGSGKSTMI 54 (289)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 363
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=25.46 E-value=24 Score=34.08 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..+
T Consensus 36 lG~sGsGKSTLL 47 (356)
T PRK11650 36 VGPSGCGKSTLL 47 (356)
T ss_pred ECCCCCcHHHHH
Confidence 389999999988
No 364
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=25.32 E-value=25 Score=31.19 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-|
T Consensus 33 G~nGsGKSTLl 43 (243)
T TIGR01978 33 GPNGSGKSTLS 43 (243)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 365
>PRK10867 signal recognition particle protein; Provisional
Probab=25.30 E-value=24 Score=35.22 Aligned_cols=12 Identities=50% Similarity=0.570 Sum_probs=10.8
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||.|..
T Consensus 107 G~~GsGKTTtaa 118 (433)
T PRK10867 107 GLQGAGKTTTAG 118 (433)
T ss_pred CCCCCcHHHHHH
Confidence 899999999883
No 366
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.29 E-value=25 Score=32.40 Aligned_cols=12 Identities=33% Similarity=0.529 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||-.|
T Consensus 27 ~G~nGsGKS~il 38 (276)
T cd03241 27 TGETGAGKSILL 38 (276)
T ss_pred EcCCCCCHHHHH
Confidence 499999999877
No 367
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=25.29 E-value=25 Score=30.68 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.+|||||...
T Consensus 25 ~G~~GsGKT~l~ 36 (218)
T cd01394 25 YGPPGTGKTNIA 36 (218)
T ss_pred ECCCCCCHHHHH
Confidence 699999999876
No 368
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=25.28 E-value=24 Score=34.37 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 51 lGpsGsGKSTLL 62 (377)
T PRK11607 51 LGASGCGKSTLL 62 (377)
T ss_pred ECCCCCcHHHHH
Confidence 389999999997
No 369
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=25.25 E-value=24 Score=31.27 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-|
T Consensus 35 G~nGsGKSTLl 45 (243)
T TIGR02315 35 GPSGAGKSTLL 45 (243)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 370
>KOG0745|consensus
Probab=25.25 E-value=27 Score=35.37 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=16.8
Q ss_pred EEcCCHHHHHHHHHHHHhcCCcccC
Q psy15014 211 KSIRSAQEAMNALRQGALSRTTAST 235 (286)
Q Consensus 211 ~~V~S~eea~~lL~~G~~~R~~~sT 235 (286)
|.+.=-++|++.+.+-.-.|.+++-
T Consensus 471 V~L~fTe~Al~~IAq~Al~r~TGAR 495 (564)
T KOG0745|consen 471 VELHFTEKALEAIAQLALKRKTGAR 495 (564)
T ss_pred eeEEecHHHHHHHHHHHHhhccchH
Confidence 4444457788888777777777654
No 371
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=25.16 E-value=24 Score=31.30 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 34 G~nGsGKSTLl 44 (240)
T PRK09493 34 GPSGSGKSTLL 44 (240)
T ss_pred CCCCCCHHHHH
Confidence 89999999875
No 372
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=25.13 E-value=25 Score=39.28 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=7.3
Q ss_pred Cccccccccc
Q psy15014 4 TGSGKTYTMG 13 (286)
Q Consensus 4 TGSGKTyTm~ 13 (286)
.||||||||.
T Consensus 25 AGSGKT~vL~ 34 (1139)
T COG1074 25 AGTGKTFVLA 34 (1139)
T ss_pred CCCCchhHHH
Confidence 4788888873
No 373
>CHL00176 ftsH cell division protein; Validated
Probab=25.11 E-value=23 Score=37.11 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=11.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||+..
T Consensus 222 ~GPpGTGKT~LA 233 (638)
T CHL00176 222 VGPPGTGKTLLA 233 (638)
T ss_pred ECCCCCCHHHHH
Confidence 799999999987
No 374
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=25.09 E-value=25 Score=30.35 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 33 G~nGsGKSTLl 43 (198)
T TIGR01189 33 GPNGIGKTTLL 43 (198)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 375
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.07 E-value=25 Score=32.41 Aligned_cols=11 Identities=45% Similarity=0.594 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 40 G~nGsGKSTLl 50 (279)
T PRK13650 40 GHNGSGKSTTV 50 (279)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 376
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=25.05 E-value=25 Score=31.32 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-|
T Consensus 35 G~nGsGKSTLl 45 (242)
T PRK11124 35 GPSGAGKSSLL 45 (242)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 377
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=24.99 E-value=25 Score=30.78 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 34 G~nGsGKSTLl 44 (218)
T cd03290 34 GQVGCGKSSLL 44 (218)
T ss_pred CCCCCCHHHHH
Confidence 89999999888
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=24.98 E-value=24 Score=35.13 Aligned_cols=12 Identities=58% Similarity=0.595 Sum_probs=10.7
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||.|..
T Consensus 106 G~~GsGKTTtaa 117 (428)
T TIGR00959 106 GLQGSGKTTTCG 117 (428)
T ss_pred CCCCCcHHHHHH
Confidence 899999999973
No 379
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.95 E-value=25 Score=30.31 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 33 G~nGsGKSTLl 43 (195)
T PRK13541 33 GANGCGKSSLL 43 (195)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 380
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=24.94 E-value=24 Score=28.62 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=10.2
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|..|||||+--
T Consensus 5 ~G~~GsGKstla 16 (154)
T cd00464 5 IGMMGAGKTTVG 16 (154)
T ss_pred EcCCCCCHHHHH
Confidence 489999999765
No 381
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=24.77 E-value=2.1e+02 Score=26.24 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=34.0
Q ss_pred EEcCCHHHHHHHHHHHHhcCCcccCCCCCCCCCCceeEEEEEEEeeecccCCCCCceeEEEEEEEeCCCCc
Q psy15014 211 KSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSA 281 (286)
Q Consensus 211 ~~V~S~eea~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~v~~~~~~~~~~~~~~~~~s~L~lVDLAGS~ 281 (286)
..+.+++++.+.+...... ..++ + ..-|.-++.|+|..... -.|.||||.|=.
T Consensus 84 ~~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~~------------~~ltLIDlPGl~ 136 (240)
T smart00053 84 KKFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPHV------------LNLTLIDLPGIT 136 (240)
T ss_pred cccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCCC------------CceEEEeCCCcc
Confidence 4557899999998876543 1111 1 23456677777765332 258999999954
No 382
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=24.72 E-value=25 Score=31.88 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 34 G~nGsGKSTLl 44 (255)
T PRK11248 34 GPSGCGKTTLL 44 (255)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 383
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=24.67 E-value=25 Score=31.41 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 36 G~nGsGKSTLl 46 (250)
T PRK14240 36 GPSGCGKSTFL 46 (250)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 384
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.67 E-value=25 Score=30.49 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-+
T Consensus 31 G~nGsGKSTLl 41 (211)
T cd03298 31 GPSGSGKSTLL 41 (211)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 385
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=24.61 E-value=25 Score=29.72 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=9.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|..|||||+..
T Consensus 5 ~G~pGsGKst~a 16 (194)
T cd01428 5 LGPPGSGKGTQA 16 (194)
T ss_pred ECCCCCCHHHHH
Confidence 489999999655
No 386
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=24.57 E-value=58 Score=30.83 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=10.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 8 GlSGaGKs~Al 18 (284)
T PF03668_consen 8 GLSGAGKSTAL 18 (284)
T ss_pred CCCcCCHHHHH
Confidence 89999999999
No 387
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=24.55 E-value=27 Score=29.08 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=9.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||+..
T Consensus 5 ~G~~GsGKSTla 16 (149)
T cd02027 5 TGLSGSGKSTIA 16 (149)
T ss_pred EcCCCCCHHHHH
Confidence 389999998754
No 388
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=24.50 E-value=24 Score=32.50 Aligned_cols=12 Identities=33% Similarity=0.230 Sum_probs=10.1
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|.|||.--
T Consensus 56 ~GPPG~GKTTLA 67 (233)
T PF05496_consen 56 YGPPGLGKTTLA 67 (233)
T ss_dssp ESSTTSSHHHHH
T ss_pred ECCCccchhHHH
Confidence 899999998643
No 389
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=24.48 E-value=25 Score=31.07 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 35 G~nGsGKSTLl 45 (237)
T cd03252 35 GRSGSGKSTLT 45 (237)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 390
>KOG0726|consensus
Probab=24.46 E-value=22 Score=34.44 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCCCcccccccccc-----------ccCCCCCCCCcChHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGT-----------GFETDVSEEMLGIIPRAITHLFEGIQNI 42 (286)
Q Consensus 1 YGqTGSGKTyTm~G-----------~~~~~~~~~~~GIiPRal~~LF~~~~~~ 42 (286)
||..|+|||----- --..+.-....|==||.+++||+..++.
T Consensus 225 yG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 225 YGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred eCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc
Confidence 99999999853310 0000001123344599999999998775
No 391
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=24.35 E-value=26 Score=30.86 Aligned_cols=11 Identities=45% Similarity=0.471 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|||||..+
T Consensus 8 G~~GsGKTTll 18 (199)
T TIGR00101 8 GPVGSGKTALI 18 (199)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 392
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=24.35 E-value=26 Score=32.97 Aligned_cols=11 Identities=64% Similarity=0.616 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 40 G~nGsGKSTLl 50 (305)
T PRK13651 40 GQTGSGKTTFI 50 (305)
T ss_pred CCCCCcHHHHH
Confidence 89999999887
No 393
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=24.35 E-value=24 Score=28.75 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|..||||++..
T Consensus 27 ~GE~GtGK~~~A 38 (138)
T PF14532_consen 27 TGEPGTGKSLLA 38 (138)
T ss_dssp ECCTTSSHHHHH
T ss_pred EcCCCCCHHHHH
Confidence 599999999876
No 394
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=24.33 E-value=26 Score=34.19 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 46 lGpsGsGKSTLL 57 (375)
T PRK09452 46 LGPSGCGKTTVL 57 (375)
T ss_pred ECCCCCcHHHHH
Confidence 489999999888
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=24.29 E-value=24 Score=30.45 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|||||-.|
T Consensus 28 ~G~NGsGKSnil 39 (178)
T cd03239 28 VGPNGSGKSNIV 39 (178)
T ss_pred ECCCCCCHHHHH
Confidence 499999999877
No 396
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.27 E-value=26 Score=30.78 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 36 G~nGsGKSTLl 46 (229)
T cd03254 36 GPTGAGKTTLI 46 (229)
T ss_pred CCCCCCHHHHH
Confidence 89999999988
No 397
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=24.26 E-value=25 Score=32.11 Aligned_cols=12 Identities=33% Similarity=0.174 Sum_probs=10.6
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||+.+.
T Consensus 8 G~~gsGKTtl~~ 19 (229)
T PRK14494 8 GFKDSGKTTLIE 19 (229)
T ss_pred CCCCChHHHHHH
Confidence 789999999884
No 398
>PRK04182 cytidylate kinase; Provisional
Probab=24.25 E-value=27 Score=28.97 Aligned_cols=11 Identities=45% Similarity=0.425 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||...
T Consensus 7 G~~GsGKstia 17 (180)
T PRK04182 7 GPPGSGKTTVA 17 (180)
T ss_pred CCCCCCHHHHH
Confidence 89999999854
No 399
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=24.21 E-value=26 Score=31.10 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 18 G~nGsGKSTLl 28 (230)
T TIGR01184 18 GHSGCGKSTLL 28 (230)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 400
>PRK03839 putative kinase; Provisional
Probab=24.16 E-value=27 Score=29.52 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=9.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|..|||||+.-
T Consensus 6 ~G~pGsGKsT~~ 17 (180)
T PRK03839 6 TGTPGVGKTTVS 17 (180)
T ss_pred ECCCCCCHHHHH
Confidence 389999999653
No 401
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=24.12 E-value=26 Score=31.75 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 32 G~NGsGKSTLl 42 (246)
T cd03237 32 GPNGIGKTTFI 42 (246)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 402
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=23.96 E-value=25 Score=31.09 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 36 G~nGsGKSTLl 46 (238)
T cd03249 36 GSSGCGKSTVV 46 (238)
T ss_pred eCCCCCHHHHH
Confidence 89999999987
No 403
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=23.84 E-value=27 Score=33.09 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 2 ~G~nGsGKSTLl 13 (325)
T TIGR01187 2 LGPSGCGKTTLL 13 (325)
T ss_pred cCCCCCCHHHHH
Confidence 389999999877
No 404
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=23.84 E-value=27 Score=33.59 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=10.6
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|.+|||||.|..
T Consensus 38 GESGsGKS~~~~ 49 (316)
T COG0444 38 GESGSGKSVLAK 49 (316)
T ss_pred cCCCCCHHHHHH
Confidence 899999998873
No 405
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=23.83 E-value=28 Score=29.47 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=9.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||...
T Consensus 9 G~~gsGKst~a 19 (175)
T cd00227 9 GGSSAGKSSIA 19 (175)
T ss_pred CCCCCCHHHHH
Confidence 89999999765
No 406
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=23.83 E-value=26 Score=37.07 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=25.4
Q ss_pred CCCCcccccccccc---ccCC--------CCCCCCcChHHHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGT---GFET--------DVSEEMLGIIPRAITHLFEGIQNI 42 (286)
Q Consensus 1 YGqTGSGKTyTm~G---~~~~--------~~~~~~~GIiPRal~~LF~~~~~~ 42 (286)
||+.|+|||+..-- .... +.-....|=-.+.+..+|......
T Consensus 493 ~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~ 545 (733)
T TIGR01243 493 FGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQA 545 (733)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhc
Confidence 89999999987511 0000 001123455577888999887653
No 407
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=23.82 E-value=26 Score=33.27 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 40 G~sGsGKSTL~ 50 (326)
T PRK11022 40 GESGSGKSVSS 50 (326)
T ss_pred CCCCChHHHHH
Confidence 89999999886
No 408
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.76 E-value=27 Score=28.84 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=9.8
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|+|||..|
T Consensus 32 G~nGsGKStll 42 (157)
T cd00267 32 GPNGSGKSTLL 42 (157)
T ss_pred CCCCCCHHHHH
Confidence 89999999766
No 409
>KOG0922|consensus
Probab=23.75 E-value=33 Score=36.12 Aligned_cols=11 Identities=45% Similarity=0.622 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||||||.-+
T Consensus 73 GeTGsGKSTQi 83 (674)
T KOG0922|consen 73 GETGSGKSTQI 83 (674)
T ss_pred cCCCCCccccH
Confidence 89999999877
No 410
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=23.75 E-value=27 Score=31.43 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 35 G~nGsGKSTLl 45 (255)
T PRK11231 35 GPNGCGKSTLL 45 (255)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 411
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.70 E-value=26 Score=37.12 Aligned_cols=12 Identities=42% Similarity=0.293 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||++.
T Consensus 490 ~Gp~GvGKT~lA 501 (731)
T TIGR02639 490 TGPTGVGKTELA 501 (731)
T ss_pred ECCCCccHHHHH
Confidence 599999999876
No 412
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=23.70 E-value=27 Score=27.63 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|+|||..+
T Consensus 8 G~~~~GKstli 18 (157)
T cd04164 8 GKPNVGKSSLL 18 (157)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 413
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=23.66 E-value=27 Score=33.47 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 31 G~nGsGKSTLl 41 (352)
T PRK11144 31 GRSGAGKTSLI 41 (352)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 414
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=23.62 E-value=26 Score=36.21 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=9.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.||||||..|
T Consensus 182 ~G~tGsGKs~~i 193 (566)
T TIGR02759 182 HGTTGSGKSVAI 193 (566)
T ss_pred EcCCCCCHHHHH
Confidence 589999999655
No 415
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=23.59 E-value=27 Score=33.80 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..|
T Consensus 37 lGpsGsGKSTLL 48 (362)
T TIGR03258 37 IGKSGCGKTTLL 48 (362)
T ss_pred ECCCCCCHHHHH
Confidence 489999999888
No 416
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=23.58 E-value=27 Score=31.41 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 29 G~nGsGKSTLl 39 (248)
T PRK03695 29 GPNGAGKSTLL 39 (248)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 417
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.57 E-value=27 Score=31.08 Aligned_cols=11 Identities=64% Similarity=0.694 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-|
T Consensus 34 G~nGsGKSTLl 44 (242)
T cd03295 34 GPSGSGKTTTM 44 (242)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 418
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=23.56 E-value=28 Score=30.56 Aligned_cols=11 Identities=27% Similarity=0.153 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+.|+|||..|
T Consensus 32 GpNg~GKSTll 42 (199)
T cd03283 32 GSNMSGKSTFL 42 (199)
T ss_pred CCCCCChHHHH
Confidence 89999999988
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=23.56 E-value=29 Score=30.32 Aligned_cols=12 Identities=42% Similarity=0.387 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|+|||..+
T Consensus 25 ~G~~GsGKT~l~ 36 (226)
T cd01393 25 FGEFGSGKTQLC 36 (226)
T ss_pred eCCCCCChhHHH
Confidence 699999999876
No 420
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=23.54 E-value=30 Score=32.90 Aligned_cols=11 Identities=45% Similarity=0.265 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||||||.--
T Consensus 11 GptgsGKt~la 21 (307)
T PRK00091 11 GPTASGKTALA 21 (307)
T ss_pred CCCCcCHHHHH
Confidence 99999999754
No 421
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=23.51 E-value=27 Score=32.76 Aligned_cols=12 Identities=33% Similarity=0.307 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||.+.
T Consensus 42 ~G~~G~GKt~~a 53 (355)
T TIGR02397 42 SGPRGTGKTSIA 53 (355)
T ss_pred ECCCCCCHHHHH
Confidence 899999999876
No 422
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.51 E-value=27 Score=31.69 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 54 G~nGsGKSTLl 64 (268)
T PRK14248 54 GPSGCGKSTFL 64 (268)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 423
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.48 E-value=25 Score=34.05 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||..|
T Consensus 29 ~G~NGsGKT~lL 40 (365)
T TIGR00611 29 VGPNGQGKTNLL 40 (365)
T ss_pred ECCCCCCHHHHH
Confidence 699999999877
No 424
>PRK10865 protein disaggregation chaperone; Provisional
Probab=23.43 E-value=26 Score=37.94 Aligned_cols=12 Identities=42% Similarity=0.382 Sum_probs=11.0
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||++.
T Consensus 604 ~Gp~G~GKT~lA 615 (857)
T PRK10865 604 LGPTGVGKTELC 615 (857)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 425
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.43 E-value=28 Score=31.18 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 37 G~nGsGKSTLl 47 (251)
T PRK14251 37 GPSGCGKSTFL 47 (251)
T ss_pred CCCCCCHHHHH
Confidence 89999999766
No 426
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.42 E-value=28 Score=31.29 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 39 G~nGsGKSTLl 49 (253)
T PRK14261 39 GPSGCGKSTLL 49 (253)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 427
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=23.38 E-value=28 Score=30.16 Aligned_cols=11 Identities=55% Similarity=0.631 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 33 G~nGsGKSTLl 43 (208)
T cd03268 33 GPNGAGKTTTM 43 (208)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 428
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=23.25 E-value=27 Score=35.02 Aligned_cols=12 Identities=42% Similarity=0.399 Sum_probs=10.8
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|+|||+..
T Consensus 53 iGppG~GKT~lA 64 (441)
T TIGR00390 53 IGPTGVGKTEIA 64 (441)
T ss_pred ECCCCCCHHHHH
Confidence 699999999876
No 429
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=23.24 E-value=27 Score=36.26 Aligned_cols=11 Identities=45% Similarity=0.513 Sum_probs=9.7
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||||||...
T Consensus 263 g~TGSGKT~va 273 (630)
T TIGR00643 263 GDVGSGKTLVA 273 (630)
T ss_pred CCCCCcHHHHH
Confidence 79999999865
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=23.22 E-value=27 Score=31.44 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|++|+|||...
T Consensus 30 ~G~~G~GKTtl~ 41 (230)
T PRK08533 30 EGDESTGKSILS 41 (230)
T ss_pred ECCCCCCHHHHH
Confidence 599999999884
No 431
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=23.19 E-value=28 Score=29.33 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-+
T Consensus 34 G~nGsGKSTLl 44 (166)
T cd03223 34 GPSGTGKSSLF 44 (166)
T ss_pred CCCCCCHHHHH
Confidence 89999999886
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=23.18 E-value=31 Score=30.05 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=9.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||+--
T Consensus 7 G~pGaGK~T~A 17 (178)
T COG0563 7 GPPGAGKSTLA 17 (178)
T ss_pred CCCCCCHHHHH
Confidence 89999998643
No 433
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.18 E-value=28 Score=30.30 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 40 G~nGsGKSTLl 50 (202)
T cd03233 40 GRPGSGCSTLL 50 (202)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 434
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.14 E-value=28 Score=30.67 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+.|||||..|
T Consensus 35 G~nGsGKSTLl 45 (234)
T cd03251 35 GPSGSGKSTLV 45 (234)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 435
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=23.05 E-value=28 Score=31.50 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 35 G~nGsGKSTLl 45 (258)
T PRK13548 35 GPNGAGKSTLL 45 (258)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 436
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=23.00 E-value=29 Score=30.54 Aligned_cols=13 Identities=38% Similarity=0.235 Sum_probs=10.9
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
||.+|||||..+.
T Consensus 29 ~G~~GsGKT~l~~ 41 (225)
T PRK09361 29 YGPPGSGKTNICL 41 (225)
T ss_pred ECCCCCCHHHHHH
Confidence 6999999997763
No 437
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=22.99 E-value=27 Score=33.97 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.4
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
+|.+||||||.+-
T Consensus 44 ~G~~GtGKs~~ar 56 (350)
T CHL00081 44 MGDRGTGKSTTIR 56 (350)
T ss_pred EcCCCCCHHHHHH
Confidence 5899999999984
No 438
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.97 E-value=29 Score=31.68 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 34 G~nGsGKSTLl 44 (271)
T PRK13638 34 GANGCGKSTLF 44 (271)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 439
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=22.96 E-value=29 Score=31.01 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 36 G~nGsGKSTLl 46 (250)
T PRK11264 36 GPSGSGKTTLL 46 (250)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 440
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=22.94 E-value=28 Score=31.34 Aligned_cols=11 Identities=45% Similarity=0.591 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 39 G~nGsGKSTLl 49 (258)
T PRK11701 39 GESGSGKTTLL 49 (258)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 441
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=22.92 E-value=29 Score=31.52 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 37 G~NGsGKSTLl 47 (251)
T PRK09544 37 GPNGAGKSTLV 47 (251)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 442
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=22.92 E-value=29 Score=30.00 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|+|||..+
T Consensus 38 G~nG~GKSTLl 48 (204)
T cd03250 38 GPVGSGKSSLL 48 (204)
T ss_pred CCCCCCHHHHH
Confidence 89999999976
No 443
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.91 E-value=29 Score=29.28 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=9.8
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 35 G~nGsGKstLl 45 (171)
T cd03228 35 GPSGSGKSTLL 45 (171)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 444
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=22.89 E-value=29 Score=30.55 Aligned_cols=12 Identities=33% Similarity=0.373 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.+|+|||+..
T Consensus 26 ~G~~G~GKT~l~ 37 (229)
T TIGR03881 26 TGEPGTGKTIFC 37 (229)
T ss_pred ECCCCCChHHHH
Confidence 599999999865
No 445
>KOG1970|consensus
Probab=22.85 E-value=33 Score=35.65 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=10.7
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|+|||.|+
T Consensus 117 GPsGcGKSTtv 127 (634)
T KOG1970|consen 117 GPSGCGKSTTV 127 (634)
T ss_pred CCCCCCchhHH
Confidence 99999999998
No 446
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=22.83 E-value=29 Score=33.44 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|++|||||..+
T Consensus 34 lGpsGsGKSTLL 45 (353)
T PRK10851 34 LGPSGSGKTTLL 45 (353)
T ss_pred ECCCCCCHHHHH
Confidence 389999999887
No 447
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=22.79 E-value=30 Score=33.12 Aligned_cols=12 Identities=42% Similarity=0.224 Sum_probs=10.7
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|+|+||||...
T Consensus 9 ~GPTAsGKT~la 20 (308)
T COG0324 9 AGPTASGKTALA 20 (308)
T ss_pred ECCCCcCHHHHH
Confidence 499999999976
No 448
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.75 E-value=29 Score=31.69 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 57 G~nGsGKSTLl 67 (269)
T cd03294 57 GLSGSGKSTLL 67 (269)
T ss_pred CCCCCCHHHHH
Confidence 89999999886
No 449
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.67 E-value=29 Score=30.98 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 36 G~nGsGKSTLl 46 (241)
T PRK14250 36 GPSGAGKSTLI 46 (241)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 450
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=22.59 E-value=30 Score=39.28 Aligned_cols=11 Identities=55% Similarity=0.661 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+||||||.-+
T Consensus 96 GeTGSGKTTql 106 (1294)
T PRK11131 96 GETGSGKTTQL 106 (1294)
T ss_pred CCCCCCHHHHH
Confidence 89999999865
No 451
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=22.53 E-value=29 Score=33.56 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 36 G~nGsGKSTLL 46 (369)
T PRK11000 36 GPSGCGKSTLL 46 (369)
T ss_pred CCCCCcHHHHH
Confidence 89999999888
No 452
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=22.45 E-value=29 Score=29.05 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=10.6
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|..|+|||.++.
T Consensus 6 G~~GsGKTt~~~ 17 (148)
T cd03114 6 GVPGAGKSTLID 17 (148)
T ss_pred CCCCCcHHHHHH
Confidence 889999999884
No 453
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=22.40 E-value=30 Score=30.94 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 40 G~nGsGKSTLl 50 (252)
T CHL00131 40 GPNGSGKSTLS 50 (252)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 454
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=22.39 E-value=30 Score=29.24 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||.-+
T Consensus 34 ~G~nGsGKStLl 45 (173)
T cd03246 34 IGPSGSGKSTLA 45 (173)
T ss_pred ECCCCCCHHHHH
Confidence 389999999877
No 455
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=22.37 E-value=35 Score=31.37 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|..|+|||.++
T Consensus 34 LG~NGAGKTT~L 45 (245)
T COG4555 34 LGENGAGKTTLL 45 (245)
T ss_pred EcCCCCCchhHH
Confidence 489999999886
No 456
>PRK14530 adenylate kinase; Provisional
Probab=22.33 E-value=31 Score=30.27 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=9.6
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-.
T Consensus 10 G~pGsGKsT~~ 20 (215)
T PRK14530 10 GAPGAGKGTQS 20 (215)
T ss_pred CCCCCCHHHHH
Confidence 89999999765
No 457
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=22.30 E-value=30 Score=30.74 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||..+
T Consensus 35 ~G~nGsGKSTLl 46 (241)
T PRK10895 35 LGPNGAGKTTTF 46 (241)
T ss_pred ECCCCCCHHHHH
Confidence 389999999877
No 458
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=22.29 E-value=30 Score=37.25 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=11.4
Q ss_pred CCCCccccccccc
Q psy15014 1 MLQTGSGKTYTMG 13 (286)
Q Consensus 1 YGqTGSGKTyTm~ 13 (286)
.|+||||||..|-
T Consensus 462 ~G~tGsGKS~l~~ 474 (818)
T PRK13830 462 FGPTGSGKSTLLA 474 (818)
T ss_pred ECCCCCCHHHHHH
Confidence 3899999999993
No 459
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=22.23 E-value=30 Score=30.54 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-+
T Consensus 40 G~nGsGKSTLl 50 (225)
T PRK10247 40 GPSGCGKSTLL 50 (225)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 460
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=22.22 E-value=25 Score=32.23 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=9.6
Q ss_pred CCCCccccccc
Q psy15014 1 MLQTGSGKTYT 11 (286)
Q Consensus 1 YGqTGSGKTyT 11 (286)
||..|||||--
T Consensus 44 ~G~~gsGKTql 54 (256)
T PF08423_consen 44 VGESGSGKTQL 54 (256)
T ss_dssp EESTTSSHHHH
T ss_pred EEecccccchH
Confidence 79999999954
No 461
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=22.20 E-value=30 Score=29.04 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 33 G~nGsGKSTLl 43 (163)
T cd03216 33 GENGAGKSTLM 43 (163)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 462
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.17 E-value=30 Score=31.76 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 38 G~nGsGKSTLl 48 (274)
T PRK13647 38 GPNGAGKSTLL 48 (274)
T ss_pred CCCCCcHHHHH
Confidence 89999999988
No 463
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=22.17 E-value=31 Score=32.28 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=10.6
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|..|+|||.++.
T Consensus 41 G~~G~GKttl~~ 52 (300)
T TIGR00750 41 GTPGAGKSTLLE 52 (300)
T ss_pred CCCCCCHHHHHH
Confidence 889999999883
No 464
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.17 E-value=30 Score=30.93 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 35 G~nGsGKSTLl 45 (246)
T PRK14269 35 GASGCGKSTFL 45 (246)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 465
>PRK05541 adenylylsulfate kinase; Provisional
Probab=22.14 E-value=31 Score=29.02 Aligned_cols=11 Identities=45% Similarity=0.380 Sum_probs=9.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|..|||||...
T Consensus 14 G~~GsGKst~a 24 (176)
T PRK05541 14 GLAGSGKTTIA 24 (176)
T ss_pred cCCCCCHHHHH
Confidence 88999998765
No 466
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=22.12 E-value=28 Score=36.19 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||++|+|||+..
T Consensus 181 ~Gp~GtGKTTLA 192 (615)
T TIGR02903 181 YGPPGVGKTTAA 192 (615)
T ss_pred ECCCCCCHHHHH
Confidence 799999999876
No 467
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.09 E-value=30 Score=30.94 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 36 G~nGsGKSTLl 46 (250)
T PRK14245 36 GPSGCGKSTFL 46 (250)
T ss_pred CCCCCCHHHHH
Confidence 89999999886
No 468
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=22.06 E-value=32 Score=29.86 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=10.9
Q ss_pred CCCccccccccc
Q psy15014 2 LQTGSGKTYTMG 13 (286)
Q Consensus 2 GqTGSGKTyTm~ 13 (286)
|+.|+|||..|-
T Consensus 36 G~Ng~GKStll~ 47 (202)
T cd03243 36 GPNMGGKSTYLR 47 (202)
T ss_pred CCCCCccHHHHH
Confidence 899999999984
No 469
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.03 E-value=31 Score=31.69 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 37 G~NGsGKSTLl 47 (277)
T PRK13652 37 GPNGAGKSTLF 47 (277)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 470
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.03 E-value=30 Score=32.06 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..|
T Consensus 40 G~nGsGKSTLl 50 (290)
T PRK13634 40 GHTGSGKSTLL 50 (290)
T ss_pred CCCCCcHHHHH
Confidence 89999999887
No 471
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=22.02 E-value=31 Score=30.64 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=10.1
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|.+|||||+-.
T Consensus 31 ~G~~GsGKt~l~ 42 (234)
T PRK06067 31 EGDHGTGKSVLS 42 (234)
T ss_pred ECCCCCChHHHH
Confidence 599999998765
No 472
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=22.01 E-value=31 Score=30.31 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|+.|||||+.+
T Consensus 47 G~nGsGKSTLl 57 (226)
T cd03248 47 GPSGSGKSTVV 57 (226)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 473
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=22.01 E-value=31 Score=30.92 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 36 G~nGsGKSTLl 46 (253)
T TIGR02323 36 GESGSGKSTLL 46 (253)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 474
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.95 E-value=31 Score=30.64 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|+|||..|
T Consensus 35 G~nGsGKSTLl 45 (242)
T TIGR03411 35 GPNGAGKTTMM 45 (242)
T ss_pred CCCCCCHHHHH
Confidence 89999999886
No 475
>PRK10908 cell division protein FtsE; Provisional
Probab=21.94 E-value=31 Score=30.25 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-+
T Consensus 35 G~nGsGKSTLl 45 (222)
T PRK10908 35 GHSGAGKSTLL 45 (222)
T ss_pred CCCCCCHHHHH
Confidence 89999999776
No 476
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=21.91 E-value=31 Score=30.02 Aligned_cols=11 Identities=45% Similarity=0.585 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 38 G~nGsGKSTLl 48 (218)
T cd03266 38 GPNGAGKTTTL 48 (218)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 477
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.86 E-value=31 Score=30.83 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-|
T Consensus 36 G~nGsGKSTLl 46 (250)
T PRK14262 36 GPSGCGKTTLL 46 (250)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 478
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.80 E-value=29 Score=33.04 Aligned_cols=12 Identities=33% Similarity=0.254 Sum_probs=10.9
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||+.|+|||++.
T Consensus 45 ~G~~G~GKt~~a 56 (367)
T PRK14970 45 CGPRGVGKTTCA 56 (367)
T ss_pred ECCCCCCHHHHH
Confidence 899999999776
No 479
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.76 E-value=31 Score=30.95 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 40 G~nGsGKSTLl 50 (254)
T PRK14273 40 GPSGCGKSTFL 50 (254)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 480
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.75 E-value=31 Score=29.37 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
.|.+|||||.-+
T Consensus 32 ~G~nGsGKSTLl 43 (182)
T cd03215 32 AGLVGNGQTELA 43 (182)
T ss_pred ECCCCCCHHHHH
Confidence 389999999877
No 481
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=21.75 E-value=29 Score=29.82 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=20.0
Q ss_pred CCCcEEEeccEEEEcCCHHHHHHHHHHHHhcC
Q psy15014 199 SGHSIYVTGATSKSIRSAQEAMNALRQGALSR 230 (286)
Q Consensus 199 ~~~~v~v~gl~~~~V~S~eea~~lL~~G~~~R 230 (286)
.++..|+.++...+...-..++++|+.+.-.|
T Consensus 93 ~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 93 NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp TTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred cceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 34667777777777666666777776554433
No 482
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.72 E-value=31 Score=31.38 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 42 G~nGsGKSTLl 52 (269)
T PRK13648 42 GHNGSGKSTIA 52 (269)
T ss_pred CCCCCCHHHHH
Confidence 89999999887
No 483
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=21.72 E-value=31 Score=36.99 Aligned_cols=12 Identities=42% Similarity=0.329 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||+|||+..
T Consensus 494 ~GP~GvGKT~lA 505 (758)
T PRK11034 494 AGPTGVGKTEVT 505 (758)
T ss_pred ECCCCCCHHHHH
Confidence 599999999765
No 484
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.72 E-value=31 Score=31.52 Aligned_cols=11 Identities=55% Similarity=0.643 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||..+
T Consensus 40 G~nGsGKSTLl 50 (280)
T PRK13649 40 GHTGSGKSTIM 50 (280)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 485
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.67 E-value=31 Score=31.47 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 46 G~nGsGKSTLl 56 (269)
T PRK14259 46 GPSGCGKSTVL 56 (269)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 486
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=21.64 E-value=32 Score=32.04 Aligned_cols=12 Identities=42% Similarity=0.407 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
||.+|||||.-+
T Consensus 101 ~G~~g~GKT~l~ 112 (310)
T TIGR02236 101 FGEFGSGKTQIC 112 (310)
T ss_pred ECCCCCCHHHHH
Confidence 799999999765
No 487
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=21.47 E-value=35 Score=36.01 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=10.4
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.|.
T Consensus 99 GESGaGKTe~~ 109 (677)
T smart00242 99 GESGAGKTENT 109 (677)
T ss_pred cCCCCcchHHH
Confidence 89999999997
No 488
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=21.46 E-value=32 Score=31.11 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 46 G~nGsGKSTLl 56 (260)
T PRK10744 46 GPSGCGKSTLL 56 (260)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 489
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=21.46 E-value=32 Score=30.84 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=10.1
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..|
T Consensus 33 G~nGsGKSTLl 43 (252)
T TIGR03005 33 GPSGSGKSTIL 43 (252)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 490
>KOG0990|consensus
Probab=21.45 E-value=41 Score=32.72 Aligned_cols=41 Identities=32% Similarity=0.345 Sum_probs=27.7
Q ss_pred CCCCccccccccccc-------cCCC------CCCCCcCh-HHHHHHHHHHHHHH
Q psy15014 1 MLQTGSGKTYTMGTG-------FETD------VSEEMLGI-IPRAITHLFEGIQN 41 (286)
Q Consensus 1 YGqTGSGKTyTm~G~-------~~~~------~~~~~~GI-iPRal~~LF~~~~~ 41 (286)
||+.|+|||-||.-. +.-. ....++|| ++|-=..+|...+.
T Consensus 68 YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~ 122 (360)
T KOG0990|consen 68 YGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQ 122 (360)
T ss_pred cCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhcc
Confidence 999999999999421 1100 12356677 67888888888764
No 491
>PF02810 SEC-C: SEC-C motif; InterPro: IPR004027 The SEC-C motif found in the C terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.; PDB: 1OZB_J 1TM6_A 2I9W_A 2JQ5_A.
Probab=21.45 E-value=38 Score=19.48 Aligned_cols=8 Identities=63% Similarity=1.086 Sum_probs=6.3
Q ss_pred Cccccccc
Q psy15014 4 TGSGKTYT 11 (286)
Q Consensus 4 TGSGKTyT 11 (286)
-||||+|.
T Consensus 7 CgSg~~y~ 14 (21)
T PF02810_consen 7 CGSGKKYK 14 (21)
T ss_dssp TSCSSBHH
T ss_pred CCCCchHH
Confidence 48999884
No 492
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.41 E-value=30 Score=38.07 Aligned_cols=12 Identities=42% Similarity=0.509 Sum_probs=10.6
Q ss_pred CCCCcccccccc
Q psy15014 1 MLQTGSGKTYTM 12 (286)
Q Consensus 1 YGqTGSGKTyTm 12 (286)
+|+||||||..+
T Consensus 32 ~G~nGaGKSTil 43 (1042)
T TIGR00618 32 CGKTGAGKTTLL 43 (1042)
T ss_pred ECCCCCCHHHHH
Confidence 599999999776
No 493
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=21.39 E-value=31 Score=30.70 Aligned_cols=14 Identities=29% Similarity=0.145 Sum_probs=11.5
Q ss_pred CCCCcccccccccc
Q psy15014 1 MLQTGSGKTYTMGT 14 (286)
Q Consensus 1 YGqTGSGKTyTm~G 14 (286)
.|.+|||||..+.+
T Consensus 27 ~G~sGsGKSTL~~~ 40 (226)
T cd03270 27 TGVSGSGKSSLAFD 40 (226)
T ss_pred EcCCCCCHHHHHHH
Confidence 38999999999743
No 494
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=21.37 E-value=32 Score=29.12 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=9.9
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||.-+
T Consensus 35 G~nGsGKStLl 45 (178)
T cd03247 35 GRSGSGKSTLL 45 (178)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 495
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.36 E-value=32 Score=31.69 Aligned_cols=11 Identities=36% Similarity=0.410 Sum_probs=10.3
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|+|||..+
T Consensus 40 G~nGaGKSTLl 50 (279)
T PRK13635 40 GHNGSGKSTLA 50 (279)
T ss_pred CCCCCcHHHHH
Confidence 89999999987
No 496
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.30 E-value=32 Score=29.70 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.+|||||..+
T Consensus 34 G~nGsGKSTLl 44 (200)
T PRK13540 34 GSNGAGKTTLL 44 (200)
T ss_pred CCCCCCHHHHH
Confidence 89999999876
No 497
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=21.27 E-value=32 Score=30.39 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=10.0
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|++|||||.-|
T Consensus 32 G~nGsGKSTLl 42 (232)
T PRK10771 32 GPSGAGKSTLL 42 (232)
T ss_pred CCCCCCHHHHH
Confidence 89999999877
No 498
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=21.27 E-value=34 Score=29.41 Aligned_cols=11 Identities=45% Similarity=0.468 Sum_probs=10.2
Q ss_pred CCCcccccccc
Q psy15014 2 LQTGSGKTYTM 12 (286)
Q Consensus 2 GqTGSGKTyTm 12 (286)
|.||+|||.++
T Consensus 7 G~~g~GKSsl~ 17 (196)
T cd01852 7 GKTGAGKSATG 17 (196)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 499
>KOG1882|consensus
Probab=21.26 E-value=1.4e+02 Score=27.94 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCCCCCCceeEEEEEEEeeecccCCCCCce-eEEEEEEEeCCCCcCcc
Q psy15014 238 NSQSSRSHAIFTLHIQQKRLVKVEDPEGEI-GEFLLFLTFPTGSASEF 284 (286)
Q Consensus 238 N~~SSRSHaIftI~v~~~~~~~~~~~~~~~-~~s~L~lVDLAGS~~~~ 284 (286)
...+|.-||||+.++..... ++|.. ..-+.+++||-.+-..|
T Consensus 211 hpScSKQHaviQyR~v~~~r-----~dGt~grrvkpYiiDLgS~NgTf 253 (293)
T KOG1882|consen 211 HPSCSKQHAVIQYRLVEFTR-----ADGTVGRRVKPYIIDLGSGNGTF 253 (293)
T ss_pred Cccccccceeeeeeeccccc-----CCCccceeeeeEEEecCCCCcce
Confidence 44568889999999876442 33332 34489999998766555
No 500
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=21.24 E-value=30 Score=31.49 Aligned_cols=13 Identities=38% Similarity=0.255 Sum_probs=10.2
Q ss_pred CCCcccccccccc
Q psy15014 2 LQTGSGKTYTMGT 14 (286)
Q Consensus 2 GqTGSGKTyTm~G 14 (286)
|+-|||||+=..+
T Consensus 3 GpaGSGKTT~~~~ 15 (238)
T PF03029_consen 3 GPAGSGKTTFCKG 15 (238)
T ss_dssp ESTTSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8899999976543
Done!