RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15014
(286 letters)
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 114 bits (288), Expect = 9e-30
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL + KS I+I EDS +I + G T ++ SAQE M+ L QG+LSRTT
Sbjct: 140 EVRDLLSPSTS-----EKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTT 194
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLF 273
AST MNSQSSRSHAIFT+ ++Q R P +
Sbjct: 195 ASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTL 235
Score = 86.6 bits (215), Expect = 1e-19
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTMGT F EE +GIIPRAI H+F+ I ++ P+ ++ F
Sbjct: 82 QTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDE--------PDFQLKVSF 133
Query: 63 LELYNEEV 70
LELYNEEV
Sbjct: 134 LELYNEEV 141
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 91.1 bits (227), Expect = 4e-21
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 186 LSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSH 245
L+ ++I ED +YV G T S+ S +E N L +G +RT A+T+MN +SSRSH
Sbjct: 145 LNPSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSH 204
Query: 246 AIFTLHIQQK 255
A+FT+ ++QK
Sbjct: 205 AVFTITVEQK 214
Score = 66.1 bits (162), Expect = 2e-12
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM + + GIIPRA+ LFE I E + V+ +
Sbjct: 88 QTGSGKTYTMIG------TPDSPGIIPRALKDLFEKIDKREEG--------WQFSVKVSY 133
Query: 63 LELYNEEV 70
LE+YNE++
Sbjct: 134 LEIYNEKI 141
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 88.4 bits (220), Expect = 2e-20
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+I DL + K ++I ED +YV G T + SA+E + L G +RT
Sbjct: 137 KIYDLLSPSSK------KKKLRIREDPKKGVYVKGLTEVEVTSAEEVLELLELGNKNRTV 190
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRL 257
AST MN +SSRSHAIFT+ ++Q+
Sbjct: 191 ASTNMNEESSRSHAIFTITVEQRNR 215
Score = 70.7 bits (174), Expect = 5e-14
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM E D EE GIIPRA+ LFE I+ + + V+ +
Sbjct: 82 QTGSGKTYTM----EGDPPEEEPGIIPRALEDLFERIE-------ERKERKWSFSVRVSY 130
Query: 63 LELYNEEV 70
LE+YNE++
Sbjct: 131 LEIYNEKI 138
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 86.9 bits (216), Expect = 1e-19
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL + + ED +YV G T + SA++A++ L++G +RTT
Sbjct: 140 KVYDLLSPEPP------SKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTT 193
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVK 259
AST MN +SSRSHAIFT+H++Q+
Sbjct: 194 ASTAMNERSSRSHAIFTIHVEQRNTTN 220
Score = 62.3 bits (152), Expect = 3e-11
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM S + GIIPRA+ LF I + V +
Sbjct: 87 QTGSGKTYTMFG------SPKDPGIIPRALEDLFNLIDE-------RKEKNKSFSVSVSY 133
Query: 63 LELYNEEV 70
LE+YNE+V
Sbjct: 134 LEIYNEKV 141
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 84.3 bits (209), Expect = 8e-19
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 186 LSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSH 245
L K N+++HED +YV G T + + S +E + + +G +R AST MN +SSRSH
Sbjct: 145 LDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSH 204
Query: 246 AIFTLHIQQK 255
+IF + ++Q+
Sbjct: 205 SIFLITLKQE 214
Score = 53.4 bits (129), Expect = 3e-08
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM E+ GIIPR + +FE I ++ E E V+ +
Sbjct: 85 QTGSGKTYTM---EGPPGDPELKGIIPRIVHDIFEHISSMDENL--------EFHVKVSY 133
Query: 63 LELYNEEVSGL 73
LE+Y E++ L
Sbjct: 134 LEIYMEKIRDL 144
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 77.9 bits (192), Expect = 2e-16
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 122 IEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNN---TFRFQIIDLF 178
++S +QG+ F+ L + I+ EE+R L L K + + QI DL
Sbjct: 96 SSSDDESPHGLQGVIPRI---FEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLL 152
Query: 179 DDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMN 238
D T N+KI ED +YV T + + S ++ L +G +R A+T MN
Sbjct: 153 DPT--------SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMN 204
Query: 239 SQSSRSHAIFTLHIQQK 255
S+SSRSHA+FT I+
Sbjct: 205 SESSRSHAVFTCTIESW 221
Score = 52.1 bits (125), Expect = 1e-07
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 3 QTGSGKTYTMGTGFETDVSE--EMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQA 60
QTGSGKTYTM +D + G+IPR +LF IQ E+ + + +
Sbjct: 83 QTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDG----LKFLCKC 138
Query: 61 QFLELYNEEVSGL 73
FLE+YNE+++ L
Sbjct: 139 SFLEIYNEQITDL 151
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 72.6 bits (179), Expect = 1e-14
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 169 TFRFQIIDLFDDT-RDYGLSKMKSNIK--IHEDSGHSIYVTGATSKSIRSAQEAMNALRQ 225
T +++++++T RD +K K I DS YVT T + S +E L
Sbjct: 127 TITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNL 186
Query: 226 GALSRTTASTQMNSQSSRSHAIFTLHIQ 253
G+ +R+ AST MN SSRSHA+F L I+
Sbjct: 187 GSKNRSVASTNMNEHSSRSHAVFQLKIR 214
Score = 62.2 bits (152), Expect = 4e-11
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 15/69 (21%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTGSGKTYTM G E GIIPRA+ LF + + E+ + A
Sbjct: 86 QTGSGKTYTMEGP-------PENPGIIPRALEQLFNTAEELKEKGW-------SYTITAS 131
Query: 62 FLELYNEEV 70
LE+YNE +
Sbjct: 132 MLEIYNETI 140
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 70.4 bits (173), Expect = 7e-14
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDS--GHSIYVTGATSKSIRSAQEAMNALRQGALSR 230
++ DL S + ++I +D+ + + G ++ +A E + L +G+ R
Sbjct: 151 ELFDLLSSE-----SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKR 205
Query: 231 TTASTQMNSQSSRSHAIF--TLHIQQKRLVKVEDPEGE 266
TA+T MN QSSRSH+IF T+HI K GE
Sbjct: 206 KTAATLMNDQSSRSHSIFSITIHI------KETTISGE 237
Score = 56.1 bits (136), Expect = 5e-09
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 17/77 (22%)
Query: 3 QTGSGKTYTM------GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEV 56
QTG+GKTYTM G ++S GIIPRA+ LFE +++ E
Sbjct: 90 QTGTGKTYTMEGDRTDNKGSTWELSPHA-GIIPRALYQLFEKLESQNT----------EY 138
Query: 57 VVQAQFLELYNEEVSGL 73
V+ +LELYNEE+ L
Sbjct: 139 SVKVSYLELYNEELFDL 155
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 68.3 bits (167), Expect = 3e-13
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
Q+ DL DT + S + I EDS +I+V G + S + +EA+N L G +RT
Sbjct: 143 QLYDLLGDTPEALESLPA--VTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTI 200
Query: 233 ASTQMNSQSSRSHAIFTLHIQQK 255
A T MN SSRSH IFT+H++ +
Sbjct: 201 AETSMNQASSRSHCIFTIHLESR 223
Score = 45.9 bits (109), Expect = 9e-06
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKT+TM G E+ G+IPRA+ +F + V +
Sbjct: 89 QTGAGKTFTMTGGTESYKDR---GLIPRALEQVFREVAM---------RATKTYTVHVSY 136
Query: 63 LELYNE 68
LE+YNE
Sbjct: 137 LEIYNE 142
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 68.5 bits (168), Expect = 3e-13
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 190 KSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFT 249
K N+K+ E YV + ++ S ++ N L +G SRTTAST MN SSRSHA+FT
Sbjct: 162 KGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFT 221
Query: 250 LHIQQKRLVKVEDPEGEI 267
+ + QK+L K D E
Sbjct: 222 IVLTQKKLDKETDLTTEK 239
Score = 51.2 bits (123), Expect = 2e-07
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTGSGK+YTM G EE GIIPR LF+ I++ EQ V+
Sbjct: 97 QTGSGKSYTMMGYK------EEK-GIIPRLCEELFQRIESKKEQ-------NLSYEVEVS 142
Query: 62 FLELYNEEVSGL 73
++E+YNE+V L
Sbjct: 143 YMEIYNEKVRDL 154
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 68.2 bits (167), Expect = 6e-13
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 159 KVLASLNKNNTFRFQI--IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSA 216
L L+ F I ++++++ LS + ++ I EDS + V G T K + S
Sbjct: 126 SKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSK 185
Query: 217 QEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQK 255
+E ++ LR+G +RTTAST++N +SSRSH+IF + + K
Sbjct: 186 EEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASK 224
Score = 40.9 bits (96), Expect = 5e-04
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM +EE GIIP ++ LF +++ + V + +
Sbjct: 98 QTGSGKTYTMSG------TEEEPGIIPLSLKELFSKLED------LSMTKDFAVSI--SY 143
Query: 63 LELYNEEV 70
LE+YNE++
Sbjct: 144 LEIYNEKI 151
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 67.3 bits (165), Expect = 8e-13
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 143 FQQLQAKIRSTEEERDKVLASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHS 202
+ L KI +++++ + SL+ + I DL LS +++ ED
Sbjct: 119 MKDLFDKIEERKDDKEFEV-SLSYLEIYNETIRDL--------LSPSSGPLELREDPNQG 169
Query: 203 IYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQK 255
I V G T +SA+E + L +G +RT T+ N+ SSRSHA+ + ++QK
Sbjct: 170 IVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQK 222
Score = 40.7 bits (96), Expect = 5e-04
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 4 TGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFL 63
TG+GKT+TM G ++D G++ + LF+ I+ + + + E V +L
Sbjct: 97 TGAGKTHTM-LGTDSDP-----GLMVLTMKDLFDKIE----ERKDDK----EFEVSLSYL 142
Query: 64 ELYNEEVSGL 73
E+YNE + L
Sbjct: 143 EIYNETIRDL 152
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 64.2 bits (157), Expect = 8e-12
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 193 IKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHI 252
+ + ED ++ + G T K + S E + + G RTT ST N QSSRSHAI + +
Sbjct: 154 LSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIIL 213
Query: 253 QQKRLVK 259
+ K+L K
Sbjct: 214 KNKKLNK 220
Score = 41.9 bits (99), Expect = 2e-04
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM E G+ A +F R ++ V F
Sbjct: 93 QTGSGKTYTMLG------DENQEGLYALAARDIF----------RLLAQPNDDLGVTVSF 136
Query: 63 LELYNEEV 70
E+Y ++
Sbjct: 137 FEIYGGKL 144
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 63.5 bits (155), Expect = 1e-11
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
I DL +D+ +K + ++++ ED ++YV G T + S +EA ++G +R
Sbjct: 143 YIYDLLEDSP--SSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRV 200
Query: 233 ASTQMNSQSSRSHAIFTLHIQQ 254
A T++N +SSRSH++FT+ + Q
Sbjct: 201 AGTKLNRESSRSHSVFTIKLVQ 222
Score = 38.5 bits (90), Expect = 0.003
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 20/67 (29%)
Query: 4 TGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFL 63
T SGKTYTM G D GI+PR++ +F I + V ++
Sbjct: 98 TNSGKTYTM-QGSPGDG-----GILPRSLDVIFNSIGGYS--------------VFVSYV 137
Query: 64 ELYNEEV 70
E+YN +
Sbjct: 138 EIYNNYI 144
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 58.9 bits (143), Expect = 5e-10
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 186 LSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSH 245
LS ++I ED + V G T + + S + + + +G +R T N +SSRSH
Sbjct: 138 LSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSH 197
Query: 246 AIFTLHIQ 253
IF L I+
Sbjct: 198 TIFQLTIE 205
Score = 56.5 bits (137), Expect = 3e-09
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 15/71 (21%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKT+TM +G E+ GIIP A+ +F+ IQ+ ++ E +++ +
Sbjct: 82 QTSSGKTFTM-SG-----DEQEPGIIPLAVRDIFQRIQDTPDR---------EFLLRVSY 126
Query: 63 LELYNEEVSGL 73
LE+YNE++ L
Sbjct: 127 LEIYNEKIKDL 137
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 56.2 bits (136), Expect = 3e-09
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKT+TM G E+ GIIP + H+F I A+ + +V+ +
Sbjct: 90 QTGTGKTFTME-GVREP--PELRGIIPNSFAHIFGHI------AKAENV---QFLVRVSY 137
Query: 63 LELYNEEVSGL 73
LE+YNEEV L
Sbjct: 138 LEIYNEEVRDL 148
Score = 53.5 bits (129), Expect = 3e-08
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 127 KSHRRMQGIKQHYEDK------FQQLQAKIRSTEEERDKVLASLNKNNTFRFQIIDLF-D 179
K+ M+G+++ E + F + I E + V S ++++ +
Sbjct: 95 KTFT-MEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSY----------LEIYNE 143
Query: 180 DTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNS 239
+ RD K +++ E +YV + +++A+E + G +R+ +T MN
Sbjct: 144 EVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNE 203
Query: 240 QSSRSHAIFTLHIQQKRLVKVEDPEGEI 267
SSRSH+IFT+ I+ K ED E I
Sbjct: 204 DSSRSHSIFTITIE--CSEKGEDGENHI 229
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 52.9 bits (127), Expect = 5e-08
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 186 LSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSH 245
L K + I ED +I + G TSK I+S E A + +RT A+T++N SSRSH
Sbjct: 144 LEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSH 203
Query: 246 AIFTLHIQQKRLVKVEDPEGEI 267
A+ + + Q EG++
Sbjct: 204 AVLRIKVTQPASNIQ--LEGKL 223
Score = 36.7 bits (85), Expect = 0.008
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 4 TGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFL 63
TG+GKT+TM G+IPR ++ L + A +
Sbjct: 90 TGAGKTHTMLGDPNE------PGLIPRTLSDLLRMGRKQAWTGA----------FSMSYY 133
Query: 64 ELYNEEVSGL 73
E+YNE+V L
Sbjct: 134 EIYNEKVYDL 143
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 47.1 bits (112), Expect = 2e-06
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 214 RSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQKR 256
R+ + ++ + +G +RTTA+T MN SSRSH++F +H K
Sbjct: 53 RTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKN 95
Score = 36.0 bits (83), Expect = 0.011
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDT 52
QTGSGKTYTM + E GIIPR +T + + + R T
Sbjct: 32 QTGSGKTYTM------EGKREGAGIIPRTVTDV-IDLMDKGNANRTTAAT 74
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 46.1 bits (109), Expect = 1e-05
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
QI DL D + + N++I ED +YV T + +++ ++ L +G +R T
Sbjct: 241 QITDLLDPS--------QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRT 292
Query: 233 ASTQMNSQSSRSHAIFT 249
+T +N++SSRSH++FT
Sbjct: 293 GATSINAESSRSHSVFT 309
Score = 42.2 bits (99), Expect = 3e-04
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 3 QTGSGKTYTM----GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVV 58
QTGSGKTYTM E +S + G+ PR LF I E+ ++ D +
Sbjct: 174 QTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFA---RINEEQIKHADRQLKYQC 230
Query: 59 QAQFLELYNEEVSGLEHITCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEI--- 115
+ FLE+YNE+++ L S N + R+ V S E NLT E
Sbjct: 231 RCSFLEIYNEQITDL-------------LDPSQKNLQIREDVKSGVYVE--NLTEEYVKT 275
Query: 116 --DIKQKLIEELEKSHRR 131
D+ Q LI+ L S+RR
Sbjct: 276 MKDVTQLLIKGL--SNRR 291
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 31.5 bits (72), Expect = 0.48
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 105 SAELANLTTEIDIKQKLIEELEKSHRRMQGIKQH-YEDKFQ----------QLQAKIRST 153
++ ++ +I K IEE K + KQ+ Y++ + +L ++ +
Sbjct: 187 DMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
Query: 154 EEERDKVLASLNKNNTFRFQI 174
+ + A+LNK NT +I
Sbjct: 247 VMDIEDPSAALNKLNTAAAKI 267
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 31.2 bits (71), Expect = 0.79
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 95 EDRQSVDSAYSAELANLT-----TEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAK 149
E+ + L +L + I Q + +LE+ R++ + E K +L +
Sbjct: 768 EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827
Query: 150 IRSTEEER 157
E+E
Sbjct: 828 KEYLEKEI 835
Score = 30.8 bits (70), Expect = 0.88
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 119 QKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLA 162
++ I ELE ++ E + + + ++ E E DK+LA
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
Score = 29.7 bits (67), Expect = 2.5
Identities = 14/63 (22%), Positives = 33/63 (52%)
Query: 102 SAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVL 161
S EL++ + +I +K IE+LE+ +++ + E+ L+ +I + + E ++
Sbjct: 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
Query: 162 ASL 164
A +
Sbjct: 765 ARI 767
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 106 AELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160
A++ L E + K I++ E ++ YE + L+ + E+E K+
Sbjct: 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 31.2 bits (71), Expect = 0.80
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 103 AYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156
EL LT E+ ++ +EEL ++ + + + L +I E++
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
Score = 30.8 bits (70), Expect = 0.91
Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Query: 59 QAQFLELYNEEVSGLEH-ITCVQAHSIYSSSDSDSNSEDRQSVDSA---YSAELANLTTE 114
Q + L NE +S LE ++ + + ++S + ELA L +
Sbjct: 287 QKELYALANE-ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
Query: 115 IDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNN 168
++ ++ +E LE ++ + E + ++L+ ++ + + ++ + N
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
Score = 29.6 bits (67), Expect = 2.0
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 103 AYSAELANLTTEIDIKQKLIEELEKSHRRMQGI--------------KQHYEDKFQQLQA 148
+AEL L +++ + + ELE+ +Q KQ ++ L+
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
Query: 149 KIRSTEEERDKVLASLNK 166
++ E + +++ + L++
Sbjct: 317 QLEELEAQLEELESKLDE 334
Score = 29.6 bits (67), Expect = 2.2
Identities = 13/81 (16%), Positives = 32/81 (39%)
Query: 89 DSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQA 148
D + E+ + +AE+ L I+ + +E L ++ + ++L
Sbjct: 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
Query: 149 KIRSTEEERDKVLASLNKNNT 169
++R E +R ++ L +
Sbjct: 902 ELRELESKRSELRRELEELRE 922
Score = 28.9 bits (65), Expect = 3.9
Identities = 11/76 (14%), Positives = 29/76 (38%)
Query: 108 LANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKN 167
L +L I ++ +E+LE+ + + + ++L+ I E E + +L
Sbjct: 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
Query: 168 NTFRFQIIDLFDDTRD 183
+ ++ +
Sbjct: 886 EEALALLRSELEELSE 901
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 30.8 bits (70), Expect = 0.83
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 95 EDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTE 154
+ + E + L E++ ++ IE+LE ++ ++ DK +
Sbjct: 425 KKLEETVERLEEENSELKRELEELKREIEKLE---SELERFRREVRDK-----VRKDREI 476
Query: 155 EERDKVLASLNKN 167
RD+ + L K
Sbjct: 477 RARDRRIERLEKE 489
>gnl|CDD|234068 TIGR02946, acyl_WS_DGAT, acyltransferase, WS/DGAT/MGAT. This
bacteria-specific protein family includes a
characterized, homodimeric, broad specificity
acyltransferase from Acinetobacter sp. strain ADP1,
active as wax ester synthase, as acyl coenzyme
A:diacylglycerol acyltransferase, and as
acyl-CoA:monoacylglycerol acyltransferase [Unknown
function, Enzymes of unknown specificity].
Length = 446
Score = 30.3 bits (69), Expect = 1.0
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 94 SEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYE 140
ED + SA L L T I +E L H M K+ +
Sbjct: 290 MEDDSEGGNQVSAVLVPLPTGIA---DPVERLSAIHASMTRAKESGQ 333
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 106 AELANLTTEIDIK-QKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASL 164
L +L+ + K ++ +LE+ +R + +Y+ K ++ +E R K LA L
Sbjct: 135 TVLGDLSAHVGWKYADVVAKLEE--KRKERAAAYYKKK----VKLRKAWKEARKKALAKL 188
Query: 165 NKNNT 169
K
Sbjct: 189 PKAIV 193
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 30.0 bits (68), Expect = 1.2
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156
EL L EI I ++ I LE + + E + + L+ ++ E+
Sbjct: 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139
Score = 28.9 bits (65), Expect = 2.9
Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQ----GIKQHYEDKFQQLQAKIRSTEEERDKVLA 162
ELA L EI+ +K IE+L++ R++ + E++ +++ + + +R+++
Sbjct: 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170
Query: 163 SLNKNNTFRFQII 175
L+ ++ I
Sbjct: 171 KLDPELLSEYERI 183
>gnl|CDD|219385 pfam07352, Phage_Mu_Gam, Bacteriophage Mu Gam like protein. This
family consists of bacterial and phage Gam proteins. The
gam gene of bacteriophage Mu encodes a protein which
protects linear double stranded DNA from exonuclease
degradation in vitro and in vivo.
Length = 147
Score = 29.2 bits (66), Expect = 1.3
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 95 EDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIR--- 151
++ + Y+ EL L EI+ + L++E +++R K+ + + + + R
Sbjct: 28 DEIARIKEWYAPELEPLKDEIEYLESLVQEYCEANRDELPKKKTLKLPYGTVGWRTRPPV 87
Query: 152 STEEERDKVLASLNKNNTFRF 172
+ VL +L N RF
Sbjct: 88 VKVRGVESVLEALKSNGLTRF 108
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.5 bits (69), Expect = 1.4
Identities = 12/64 (18%), Positives = 28/64 (43%)
Query: 103 AYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLA 162
EL EI+ + +EEL + +Q +++ ++L+ +I E +++
Sbjct: 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316
Query: 163 SLNK 166
L +
Sbjct: 317 ELEE 320
Score = 29.7 bits (67), Expect = 1.9
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
E+ L ++D ++ +EELEK ++ + E + ++L+ +++ EEE++++ L +
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895
Score = 29.7 bits (67), Expect = 2.2
Identities = 15/62 (24%), Positives = 34/62 (54%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
EL +L ++ ++ +EELE+ ++ E++ +QLQ+++ EEE +++ L +
Sbjct: 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755
Query: 167 NN 168
Sbjct: 756 LQ 757
Score = 28.9 bits (65), Expect = 3.4
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 91 DSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKI 150
ED + AEL L TE++ + +EELE+ ++ + E + +LQ ++
Sbjct: 417 SERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476
Query: 151 RSTEEERDKVLASLNK 166
+ E+E + A L++
Sbjct: 477 QRLEKELSSLEARLDR 492
Score = 28.9 bits (65), Expect = 3.6
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 104 YSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDK 159
EL L E+ ++ IEELE ++ + E++ ++L+ ++ +E+ +
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEA 334
Score = 28.5 bits (64), Expect = 4.5
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 91 DSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKI 150
+ E QS EL L E++ Q+ +EELE+ ++ +++ ++L+ K
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788
Query: 151 RSTEEERDKVLASLNKNN 168
++ +EE +++ L +
Sbjct: 789 QALQEELEELEEELEEAE 806
Score = 28.5 bits (64), Expect = 4.8
Identities = 12/71 (16%), Positives = 32/71 (45%)
Query: 95 EDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTE 154
+ + L E++ ++ +EE E+ ++ + E + ++L+ +I E
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
Query: 155 EERDKVLASLN 165
EE +++ L+
Sbjct: 835 EEIEELEEKLD 845
>gnl|CDD|185717 cd09232, Snurportin-1_C, C-terminal m3G cap-binding domain of
nuclear import adaptor snurportin-1. Snurportin-1 (SPN1
or SNUPN) is a nuclear import adaptor for m3G-capped
spliceosomal U small nucleoproteins (snRNPs), which are
assembled in the cytoplasm. After capping and assembly,
the U snRNPs are transported into the nucleus by SPN1
and importin beta; SPN1 is then returned to the
cytoplasm by exportin 1 (CRM1), which also transports
the non-capped U snRNPs. The U snRNPs are essential
elements of the spliceosome, which catalyzes the
excision of introns and the ligation of exons to form a
mature mRNA. SPN1 contains two domains, an N-terminal
importin beta-binding (IBB) domain and a C-terminal m3G
cap-binding domain.
Length = 186
Score = 29.1 bits (66), Expect = 1.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 140 EDKFQQLQAKIRSTEEERDKVLASLNKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDS 199
E +F L++K+ E L ++ N FRF + F T++ L S +++D
Sbjct: 105 EFRFFWLRSKLEELPE-----LDEPSEKNPFRFVPLPYFPCTKE-SLQSAYSGP-LNDDP 157
Query: 200 ----G------HSIYVTGAT 209
G S Y G+T
Sbjct: 158 YELDGLLFYHKESHYTPGST 177
>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed.
Length = 140
Score = 28.7 bits (65), Expect = 1.7
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 99 SVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156
S+ + YSAE +L I+I K EELEK+ +++ Q + QL +++ ++E
Sbjct: 81 SLGAGYSAEK-DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 29.8 bits (68), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHR----RMQ--------GIKQHYEDKFQQLQAKIRST- 153
E+ L E I++K+ E++EKS R R Q G +D+ ++L+ KI
Sbjct: 204 EIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLK 263
Query: 154 --EEERDKVLASLNK 166
+E ++K L K
Sbjct: 264 LPKEAKEKAEKELKK 278
>gnl|CDD|214826 smart00806, AIP3, Actin interacting protein 3. Aip3p/Bud6p is a
regulator of cell and cytoskeletal polarity in
Saccharomyces cerevisiae that was previously identified
as an actin-interacting protein. Actin-interacting
protein 3 (Aip3p) localizes at the cell cortex where
cytoskeleton assembly must be achieved to execute
polarized cell growth, and deletion of AIP3 causes gross
defects in cell and cytoskeletal polarity. Aip3p
localization is mediated by the secretory pathway,
mutations in early- or late-acting components of the
secretory apparatus lead to Aip3p mislocalization.
Length = 426
Score = 29.6 bits (67), Expect = 2.0
Identities = 25/151 (16%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Query: 21 SEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITCVQ 80
+ E L + + I + +QN ++ +Q ++ E + + E + +
Sbjct: 72 NVEELDEVKKHIDDEIDTLQNELDEVKQALESQREAI--QRLKERQQNSAANIARPAASP 129
Query: 81 AHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYE 140
+ + SSS + S + + ++ AEL +L E+ + ++Q +
Sbjct: 130 SPVLASSSSAISLANNPDKLNKEQRAELKSLQRELAV-----------------LRQTHN 172
Query: 141 DKFQQLQAKIRSTEEERDKV-LASLNKNNTF 170
F +++ I+ E+ DK +SL+ + +
Sbjct: 173 SFFTEIKESIKDILEKIDKFKSSSLSASGSS 203
>gnl|CDD|213350 cd12790, RasGAP_plexin_A, Ras-GTPase Activating Domain of type A
plexins. Plexins form a conserved family of
transmembrane receptors for semaphorins and may be the
ancestors of semaphorins. They are divided into four
types (A-D) according to sequence similarity. In
vertebrates, there are four type A plexins (A1-A4) that
serve as the co-receptors for neuropilins to mediate the
signaling of class 3 semaphorins except Sema3E, which
signals through Plexin-D1. Plexins serve as direct
receptors for several other members of the semaphorin
family: class 1 and class 6 semaphorins signal through
type A plexins, which mediate diverse biological
functions including axon guidance, cardiovascular
development, and immune function. Guanylyl cyclase
Gyc76C and Off-track kinase (OTK), a putative receptor
tyrosine kinase, modulate Sema1a and Plexin-A mediated
axon repulsion. In their complex with Sema6s, type A
plexins serve as signal-transducing subunits. An
increasing number of molecules that interact with the
intracellular region of Plexin-A have been identified;
among them are IgCAMs (in axon guidance events) and
Trem2-DAP12 (in immune responses). Plexins contain a
C-terminal RasGAP domain, which functions as an enhancer
of the hydrolysis of GTP that is bound to Ras-GTPases.
Plexins display GAP activity towards the Ras homolog
Rap. Although the Rho (Ras homolog) GTPases are most
closely related to members of the Ras family, RhoGAP and
RasGAP show no sequence homology at their amino acid
level. RasGTPases function as molecular switches in a
large number of of signaling pathways. When bound to GTP
they are in the on state and when bound to GDP they are
in the off state. The RasGAP domain speeds up the
hydrolysis of GTP in Ras-like proteins acting as a
negative regulator.
Length = 385
Score = 29.3 bits (66), Expect = 2.1
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 16 FETDVSEEMLG-IIPRAITHLFEGIQNIAEQARQNGDTPPEVV 57
FET S G +P AI ++F+ + EQA Q+G T PEVV
Sbjct: 193 FETIFSTAHRGSALPLAIKYMFDFLD---EQADQHGITDPEVV 232
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 29.2 bits (66), Expect = 2.6
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 77 TCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELE---KSHRRMQ 133
C Q + S ++ EDR+ V+ AEL +L E++ ++ +E E ++ R++
Sbjct: 456 ECGQ--PVEGSPHVETIEEDRERVEE-LEAELEDLEEEVEEVEERLERAEDLVEAEDRIE 512
Query: 134 GIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKN 167
+++ ED ++L A+ R T EE+ + L +
Sbjct: 513 RLEERRED-LEELIAERRETIEEKRERAEELRER 545
>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57. The
CLD or centrosome localisation domain of Cep57 is found
at the N-terminus, and lies approximately between
residues 58 and 239. This region lies within the first
alpha-helical coiled-coil segment of Cep57, and
localises to the centrosome internally to gamma-tubulin,
suggesting that it is either on both centrioles or on a
centromatrix component. This N-terminal region can also
multimerise with the N-terminus of other Cep57
molecules. The C-terminal part, Family Cep57_MT_bd,
pfam06657, is the microtubule-binding region of Cep57.
Length = 178
Score = 28.6 bits (64), Expect = 2.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160
E + ++ + + +E LEK + R+ + E K QQL+ K++ E +R V
Sbjct: 107 EKEHDQMDVQAQLEKLEVLEKEYLRLTRTQSLAETKIQQLEEKLQEEEHQRKLV 160
>gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein YhjU.
This protein was identified by the partial phylogenetic
profiling algorithm (PMID:16930487) as part of the
system for cellulose biosynthesis in bacteria, and in
fact is found in cellulose biosynthesis gene regions.
The protein was designated YhjU in Salmonella
enteritidis, where disruption of its gene disrupts
cellulose biosynthesis and biofilm formation
(PMID:11929533) [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 518
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 95 EDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRM 132
+ ++Y L ++D + +ELEKS R++
Sbjct: 362 NSGMTSLASYPLRAKKLLDDLD---RFFDELEKSGRKV 396
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 29.3 bits (66), Expect = 3.2
Identities = 42/232 (18%), Positives = 86/232 (37%), Gaps = 32/232 (13%)
Query: 71 SGLEHITCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSH- 129
S LE + + +D + D + S +EL + +D +++++ +
Sbjct: 327 SELELLE--DQKGAFEDADIEQLQADLDQLPS-IRSELEEVEARLDALTGKHQDVQRKYE 383
Query: 130 RRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK-----NNTFRFQIIDLFDDTRD- 183
R Q IK+ E ++ ++ + EE+D+ A++ + + R Q+ + +
Sbjct: 384 RLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEE 443
Query: 184 -YGLSKMKSNIKIHEDSGHSIYVTGATS----------KSIRSAQEAMNALRQGALSRTT 232
Y L +K DS AT +++ AQE +
Sbjct: 444 EYELELRLGRLKQRLDS------ATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQS 497
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLFLTFPTGSASEF 284
Q+ + R A+ L ++RL+++ + E L L+ GS F
Sbjct: 498 ELRQLRKR--RDEALEALQRAERRLLQLRQ---ALDELELQLSPQAGSLLHF 544
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 29.1 bits (66), Expect = 3.2
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 15 GFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVV 57
G T++S++ L AI+ I + + A P+V+
Sbjct: 364 GLATEISQQGLE---EAISQPLARILELVQLALDQAQVKPDVI 403
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 28.6 bits (65), Expect = 4.0
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 123 EELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNTFRFQIIDLFDDTR 182
EELE+ + E++ Q++ ++R E E + L L++ F + L D+ +
Sbjct: 178 EELEEKIDEL-------EEELQEILRQLRELEREAREKLRELDR-EVALFAVGPLLDELK 229
Query: 183 DYGLSKMKSNIKIHE 197
+ K K+
Sbjct: 230 E----KYADLPKVLA 240
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 27.7 bits (62), Expect = 4.2
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 94 SEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRST 153
ED D + L ++ + K +E LE+ RR + + + Q+L+ ++
Sbjct: 16 KEDSLDYDQLLRRK-RALERQLAAELKQLELLEEEIRREEAELEKDLEYLQELEKNAKAL 74
Query: 154 EEERDK 159
E ER++
Sbjct: 75 EREREE 80
>gnl|CDD|187870 cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Cas6f. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6f is an endoribonuclease that generates crRNA; This
family is specific for CRISPR/Cas system I-F subtype;
Possesses RRM fold; also known as Csy4 family.
Length = 185
Score = 28.0 bits (63), Expect = 4.2
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 236 QMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEF 270
Q+ S S+ F L I+Q L PE G F
Sbjct: 143 QLKSLSTGQR--FRLFIEQGPLQ----PEPVSGLF 171
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 28.4 bits (64), Expect = 4.5
Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 118 KQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
++ L E+ ++ + M+ ++ Y++ +QL K+ E ER+K+LA +
Sbjct: 220 QELLREKQKEEEQMMEAQERSYQEHVKQLIEKM---EAEREKLLAEQER 265
>gnl|CDD|149583 pfam08581, Tup_N, Tup N-terminal. The N-terminal domain of the Tup
protein has been shown to interact with the Ssn6
transcriptional co-repressor.
Length = 79
Score = 26.5 bits (59), Expect = 4.7
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 91 DSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKI 150
+++S Q D Y ++ E+ + ++ + ELE++HR+M KQ YE++ +L+ ++
Sbjct: 19 EASSYKAQQDD--YEHKIQQQIQEMQMIRQTVYELEQAHRKM---KQKYEEEIARLKREL 73
Query: 151 RSTEEERDK 159
E R
Sbjct: 74 ----EARGG 78
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 28.6 bits (65), Expect = 4.8
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 4/116 (3%)
Query: 20 VSEE-MLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQFLELYNEEVSGLEHITC 78
+SEE MLG I + I+ I E A + G E V EL +
Sbjct: 187 LSEEVMLGAIEFGHEEIQPVIEAIEELAEEAGKEKWEFVAPEVDEELKAKVKELAYEAGL 246
Query: 79 VQAHSIYSSSDSDSNSED-RQSVDSAYSAELANLTTEIDIKQ--KLIEELEKSHRR 131
+A+ I + + + ++ V A + E K+ + ++LEK R
Sbjct: 247 KEAYQITEKQERYAALDAIKEEVLEALAEEEEEEEEADREKEIKEAFKDLEKKIVR 302
>gnl|CDD|227900 COG5613, COG5613, Uncharacterized conserved protein [Function
unknown].
Length = 400
Score = 28.4 bits (63), Expect = 4.9
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 54 PEVVVQAQFLELYNEEVSGLEHITCVQAHSIYSSSDSDSNSEDRQS-----VDSAYSAEL 108
P V + +S L + S +++ +S S + EL
Sbjct: 59 PPAVHSLVTTSAAEDVLSKLFQSVSGEVTSATEVAEAQRSSYPYLSQVNLASPQQFEIEL 118
Query: 109 ANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKV 160
A L + ++ QK+ + L + M + E+ Q KI+ EEE K
Sbjct: 119 AKLLSLVESAQKVSKLLNSNEIYMDQNTKKMENN----QQKIKKQEEEAKKA 166
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 28.5 bits (65), Expect = 5.2
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 4 TGSGKTYTM 12
TGSGKT+TM
Sbjct: 41 TGSGKTFTM 49
>gnl|CDD|221160 pfam11658, DUF3260, Protein of unknown function (DUF3260). Some
members in this family of proteins are annotated as YhjU
however this cannot be confirmed. Currently this family
has no known function.
Length = 516
Score = 28.4 bits (64), Expect = 5.3
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 93 NSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRM 132
S S+ S Y L ++D + I+ELEKS R++
Sbjct: 362 GSNRLNSLAS-YKLRAQKLLDDLD---RFIDELEKSGRKV 397
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 28.1 bits (63), Expect = 5.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 119 QKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNN 168
QK I LEK R Q + E + + L+ +I S E + + L K
Sbjct: 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR 93
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 27.8 bits (62), Expect = 5.6
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 86 SSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQ 133
SSD DS+ +D + +A EL IK++ EE E+
Sbjct: 129 DSSDDDSDDDDSEDETAALLRELEK------IKKERAEEKEREEEEKA 170
>gnl|CDD|220837 pfam10652, DUF2480, Protein of unknown function (DUF2480). All the
members of this family are uncharacterized proteins, but
the environment in which they are found on the bacterial
genome suggests a function as a glucose-6-phosphate
isomerase (EC 5.3.1.9). This could not, however, be
confirmed.
Length = 167
Score = 27.6 bits (62), Expect = 5.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 113 TEIDIKQKLIEEL---EKSHRRMQGIKQH----YEDKF 143
+IDI Q L E L EK R + +K H YEDK+
Sbjct: 29 VQIDISQWLFEGLILKEKDFR--EFLKAHDWSQYEDKY 64
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 27.9 bits (63), Expect = 6.1
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 122 IEEL-EKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
IEEL +K + YE + ++L+ ++ ER ++ ++
Sbjct: 34 IEELRQKKSAEPSRLYSLYEQEIRELRKQLDELTNERARLQLEIDN 79
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.9 bits (62), Expect = 7.0
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 106 AELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLN 165
+ L L++ D+K + E++ + + + + EE K++ +
Sbjct: 239 SALNELSSLEDMKNRYESEIKTAESDLSMELEK--------NNYYKELEERHMKIIN--D 288
Query: 166 KNNTFRFQIIDLFDDTRDYG-LSKMKSNIK 194
R I D F D ++ SNI
Sbjct: 289 PVYKNRNYINDYFKYKNDIENKKQILSNID 318
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 27.7 bits (62), Expect = 7.2
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 98 QSVDSAYS---AELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYED----------KFQ 144
Q + + AE+A+L + IE LE R + ++ ++
Sbjct: 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYE 372
Query: 145 QL-----QAKIRSTEEERDKVLASLNKNNTFRFQIID 176
QL A++ E +DK + +FR IID
Sbjct: 373 QLLTRRESAEVSKQMEVQDKAV-------SFR--IID 400
>gnl|CDD|184789 PRK14677, PRK14677, hypothetical protein; Provisional.
Length = 107
Score = 26.4 bits (58), Expect = 7.2
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 6 SGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQ 40
+ + Y + + + + + P I H FEGI
Sbjct: 72 TARFYMIQNKLKGPARVDFVRVTPEGIDH-FEGIW 105
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 27.7 bits (62), Expect = 7.7
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 101 DSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDK---FQQLQAKIRS 152
++ LA L E++ +++L E+L++ + ++Q E K L K++
Sbjct: 86 LDEHNLMLARLEWELEQRKELAEKLKELESEKEKLQQDIEKKKEFLSSLPPKLKD 140
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 26.9 bits (60), Expect = 8.2
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 91 DSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKI 150
D + E R+S L L EI+ Q IE L+ ++ + K +QL+ K+
Sbjct: 46 DRDLEFRES----LEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKL 101
Query: 151 RSTEE----ERDKVLASLNKNNTFRFQ 173
++ E+ E+++V N + Q
Sbjct: 102 KTLEQKLKNEKEEVQRLKNIIQQRKTQ 128
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 27.9 bits (63), Expect = 8.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 119 QKLIE---ELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
L E ELE+ + + + E ++L+ K +EE DK+L K
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 26.8 bits (60), Expect = 8.7
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 119 QKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKN 167
QK++ E + ++ E +F++LQA+++ E+E K L K
Sbjct: 24 QKVLSESPA----GKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQ 68
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 27.0 bits (60), Expect = 8.8
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 86 SSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQ 145
S E+ Q S +L+ L E++ ++ I ELE ++ Q + +
Sbjct: 66 VQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKS 125
Query: 146 LQAKIRSTEEERDK 159
L+ ++ S EE +
Sbjct: 126 LEERLESLEESIKE 139
>gnl|CDD|235877 PRK06850, PRK06850, hypothetical protein; Provisional.
Length = 507
Score = 27.6 bits (62), Expect = 9.3
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 96 DRQSVDSAYSAELANLTTEIDIKQKLIEEL---EKSHRRMQGIKQHYEDKFQQLQAKIRS 152
D+ S + L L E + +L+ +L E+ +R + Y+ + L+ RS
Sbjct: 407 DQSLFGSDEADLLEELCQEDGLHLELVRKLLDLERQYRGLSRRSGIYDKLEKILKQDWRS 466
Query: 153 TEEERDKVLASLNKNNTFRFQIID 176
EE + I+
Sbjct: 467 LEEIAQNAALLRKLKDAIHQGDIE 490
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 27.4 bits (61), Expect = 9.6
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 118 KQKLIEELEKSHRRMQGIKQHYEDKF----------QQLQAKIRSTEEERDKVLASLN 165
+Q+ I EL+++ + K E+K Q Q K+ ER K L L
Sbjct: 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE 225
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional.
Length = 681
Score = 27.5 bits (61), Expect = 9.7
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 83 SIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELE-------------KSH 129
S++ + + +++ Q +D +SAELA L +I + +L ++ +S
Sbjct: 74 SVFFAMTAAHTNDELQRLDEQFSAELAELANDIYLNGELFARVDAVWQQRESLGLDSESI 133
Query: 130 RRMQGIKQHY 139
R ++ I Q +
Sbjct: 134 RLVEVIHQRF 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.128 0.342
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,933,255
Number of extensions: 1280224
Number of successful extensions: 1936
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1843
Number of HSP's successfully gapped: 255
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)