RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15014
(286 letters)
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 109 bits (275), Expect = 5e-28
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 143 FQQLQAKIRSTEEERDKVLASLNKNNTFRF------QIIDLFDDTRDYGLSKMKSNIKIH 196
+ I + V S + + DL + +I++
Sbjct: 121 MAEAFKLIDENDLLDCLVHVS--------YLEVYKEEFRDLLEVGTA------SRDIQLR 166
Query: 197 EDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQKR 256
ED ++ + G + E ++ L G +R T +T +N SSRSH +FT+ ++Q+
Sbjct: 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRG 226
Query: 257 LVKVEDPEGEIGEFL 271
P G+ L
Sbjct: 227 RAPSRLPRPAPGQLL 241
Score = 84.9 bits (211), Expect = 4e-19
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTMG + E+ GI+PRA+ F+ I + +V +
Sbjct: 92 QTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLL---------DCLVHVSY 142
Query: 63 LELYNEEVSGL 73
LE+Y EE L
Sbjct: 143 LEVYKEEFRDL 153
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 102 bits (256), Expect = 2e-25
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHED--SGHSIYVTGATSKSIRSAQEAMNALRQGALSR 230
++ DL + + D + +++ +D + + + G ++ + E L +GA R
Sbjct: 158 ELFDLLNPSSD-----VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKR 212
Query: 231 TTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGE 266
TTA+T MN+ SSRSH++F++ I K +GE
Sbjct: 213 TTAATLMNAYSSRSHSVFSVTIHMKE----TTIDGE 244
Score = 75.3 bits (186), Expect = 1e-15
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 3 QTGSGKTYTMGTGFETD-----VSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVV 57
QTG+GKT+TM + + + GIIPR + +FE + D E
Sbjct: 97 QTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT----------DNGTEFS 146
Query: 58 VQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 147 VKVSLLEIYNEEL 159
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 101 bits (253), Expect = 4e-25
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+I DL L K+N+ +HED YV G T + + S E M+ + +G +R
Sbjct: 141 KIRDL--------LDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHV 192
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRL 257
A T MN SSRSH+IF ++++Q+
Sbjct: 193 AVTNMNEHSSRSHSIFLINVKQENT 217
Score = 74.5 bits (184), Expect = 1e-15
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKT+TM E +GIIPR + +F I ++ E E ++ +
Sbjct: 86 QTSSGKTHTMEGKLH---DPEGMGIIPRIVQDIFNYIYSMDENL--------EFHIKVSY 134
Query: 63 LELYNEEV 70
E+Y +++
Sbjct: 135 FEIYLDKI 142
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 101 bits (253), Expect = 6e-25
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+I DL L K N+ +HED YV GAT + + S ++ + +G +R
Sbjct: 148 KIRDL--------LDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHI 199
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRL 257
A T MN SSRSH++F ++++Q+ L
Sbjct: 200 AVTNMNEHSSRSHSVFLINVKQENL 224
Score = 74.2 bits (183), Expect = 2e-15
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKT+TM GIIPR + +F I + E ++ +
Sbjct: 93 QTSSGKTHTMEGVIG---DSVKQGIIPRIVNDIFNHIYAMEVNL--------EFHIKVSY 141
Query: 63 LELYNEEV 70
E+Y +++
Sbjct: 142 YEIYMDKI 149
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 100 bits (250), Expect = 2e-24
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL K I S+ + G + S + L +G R T
Sbjct: 170 ELCDLLSTD-----DTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKT 224
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGE 266
A+T MN+QSSRSH +F++ + + EGE
Sbjct: 225 ATTLMNAQSSRSHTVFSIVVHIRE----NGIEGE 254
Score = 75.0 bits (185), Expect = 1e-15
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 3 QTGSGKTYTMGTGFETDV-----SEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVV 57
QTG+GKT+TM ++ + +GIIPRA++HLF+ ++ E
Sbjct: 109 QTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM----------MEVEYT 158
Query: 58 VQAQFLELYNEEV 70
++ +LELYNEE+
Sbjct: 159 MRISYLELYNEEL 171
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 100 bits (251), Expect = 3e-24
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+ DL +K +K+ E YV T +R +E + +R G SRT
Sbjct: 200 HVRDLLAPVVP---NKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTV 256
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGE 266
AST+MN SSRSHA+FT+ ++Q D E
Sbjct: 257 ASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTE 290
Score = 73.2 bits (180), Expect = 8e-15
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTGSGK+YTM GT + G+IPR LF+ I + Q+ V+
Sbjct: 145 QTGSGKSYTMMGTP-------DQPGLIPRTCEDLFQRI-----ASAQDETPNISYNVKVS 192
Query: 62 FLELYNEEV 70
+ E+YNE V
Sbjct: 193 YFEVYNEHV 201
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 97.7 bits (244), Expect = 1e-23
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+++DL L ++ I ED +I + G + K I S + + +RT
Sbjct: 162 KVLDL--------LDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTV 213
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKR 256
+T++N +SSRSHA+ + + Q+
Sbjct: 214 GATRLNQRSSRSHAVLLVKVDQRE 237
Score = 71.1 bits (175), Expect = 3e-14
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
TG+GKT+TM S E G+IPRA+ L + + P + V +
Sbjct: 107 PTGAGKTHTMLG------SPEQPGVIPRALMDLLQLT-----REEGAEGRPWALSVTMSY 155
Query: 63 LELYNEEV 70
LE+Y E+V
Sbjct: 156 LEIYQEKV 163
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 97.6 bits (244), Expect = 1e-23
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 32/152 (21%)
Query: 127 KSHRRMQGIKQHYEDK------FQQLQAKIRSTEEERDKVLASLNKNNTFRF------QI 174
K++ M+GI+ E + F + I ++ ++ V AS + +I
Sbjct: 115 KTYT-MEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRAS--------YLEIYQEEI 165
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
DL +++ E +YV +S +S +E + + G +R+ +
Sbjct: 166 RDLLS-------KDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGA 218
Query: 235 TQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGE 266
T MN SSRSHAIF + I+ +GE
Sbjct: 219 TNMNEHSSRSHAIFVITIECSE----VGLDGE 246
Score = 71.1 bits (175), Expect = 3e-14
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKTYTM G D E G+IP + H+F I Q + +V+A +
Sbjct: 110 QTGTGKTYTME-GIRGD--PEKRGVIPNSFDHIFTHISRSQNQ---------QYLVRASY 157
Query: 63 LELYNEEV 70
LE+Y EE+
Sbjct: 158 LEIYQEEI 165
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 97.3 bits (243), Expect = 2e-23
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL + K K N+++ E YV + ++ S + + + G RT
Sbjct: 153 RVRDLLN-------PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTV 205
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGE 266
A+T MN SSRSHA+F + QKR + E
Sbjct: 206 AATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Score = 69.9 bits (172), Expect = 7e-14
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTG+GK+YTM G ++ GIIP+ LF I + V+
Sbjct: 98 QTGAGKSYTMMGKQ-----EKDQQGIIPQLCEDLFSRINDTTNDNM-------SYSVEVS 145
Query: 62 FLELYNEEV 70
++E+Y E V
Sbjct: 146 YMEIYCERV 154
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 96.9 bits (242), Expect = 2e-23
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+I DL L+ N+ +HE+ +YV G + S QE +R+G +R
Sbjct: 145 RIRDL--------LAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAV 196
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRL 257
A+T MN +SSRSH+IF + I QK +
Sbjct: 197 AATNMNQESSRSHSIFVITITQKNV 221
Score = 71.5 bits (176), Expect = 2e-14
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GK+YTM G D + G+IPR + +F I + A E V+ +
Sbjct: 89 QTGAGKSYTMM-GTSID-DPDGRGVIPRIVEQIFTSILSSAANI--------EYTVRVSY 138
Query: 63 LELYNEEV 70
+E+Y E +
Sbjct: 139 MEIYMERI 146
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 95.3 bits (238), Expect = 6e-23
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+ DL + K I++ D +YV G T ++S + G +RTT
Sbjct: 141 VLRDLLGKE-----PQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTT 195
Query: 233 ASTQMNSQSSRSHAIFTLHIQQK 255
T +N SSRSHA+ + ++
Sbjct: 196 EFTNLNEHSSRSHALLIVTVRGV 218
Score = 72.6 bits (179), Expect = 8e-15
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKTYTM G + E GI RA+ LF +Q A E +
Sbjct: 89 QTGAGKTYTM-EG-----TAENPGINQRALQLLFSEVQEKASDW--------EYTITVSA 134
Query: 63 LELYNEEV 70
E+YNE +
Sbjct: 135 AEIYNEVL 142
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 95.4 bits (238), Expect = 6e-23
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
QI DL + + + ED+ + V G T +S++E ++ L G +RT
Sbjct: 166 QIRDLLVN---------SGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQ 216
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKR 256
T MN+ SSRSHA+F ++++Q+
Sbjct: 217 HPTDMNATSSRSHAVFQIYLRQQD 240
Score = 69.6 bits (171), Expect = 8e-14
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
TG+GKT+TM G + G++ + HL++ + I E+ +
Sbjct: 114 ATGAGKTHTM-LGSADEP-----GVMYLTMLHLYKCMDEIKEEK--------ICSTAVSY 159
Query: 63 LELYNEEV 70
LE+YNE++
Sbjct: 160 LEVYNEQI 167
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 93.8 bits (234), Expect = 3e-22
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
I DL T+ + I ED ++YV T + + +++ A+ + +G SR
Sbjct: 137 TITDLLCGTQK------MKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHY 190
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEI 267
T+MN +SSRSH IF + ++ + + + EG +
Sbjct: 191 GETKMNQRSSRSHTIFRMILESREKGEPSNCEGSV 225
Score = 68.4 bits (168), Expect = 2e-13
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 15/68 (22%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QT SGKTYTM SE+ LG+IPRAI +F+ I+ ++ E +++ +
Sbjct: 86 QTASGKTYTMMG------SEDHLGVIPRAIHDIFQKIKKFPDR---------EFLLRVSY 130
Query: 63 LELYNEEV 70
+E+YNE +
Sbjct: 131 MEIYNETI 138
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 93.5 bits (233), Expect = 3e-22
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 132 MQGIKQHYEDK------FQQLQAKIRSTEEERDKVLASL----NKNNTFRFQIIDLFDDT 181
M G ++Y+ + QQ+ I V S N+ + DL
Sbjct: 121 MMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNE------SLFDLLSTL 174
Query: 182 RDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQS 241
G S + + I E+ +++ G + ++A + L +G +R AS MN S
Sbjct: 175 PYVGPSV--TPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNS 231
Query: 242 SRSHAIFTLHIQQKR 256
SRSH IFT++++
Sbjct: 232 SRSHCIFTIYLEAHS 246
Score = 69.6 bits (171), Expect = 8e-14
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKTYTM G + + GI+PRA+ +F I+ + V+ +
Sbjct: 112 QTGAGKTYTM-MGATEN--YKHRGILPRALQQVFRMIEERPTH---------AITVRVSY 159
Query: 63 LELYNEEV 70
LE+YNE +
Sbjct: 160 LEIYNESL 167
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 92.7 bits (231), Expect = 7e-22
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+I DL + + + + ED IYV G + + +A E + +G +R
Sbjct: 150 EIRDLIKN---------NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHV 200
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRL 257
A+TQMN SSRSH+IF + I+ +
Sbjct: 201 AATQMNDTSSRSHSIFMVRIECSEV 225
Score = 68.4 bits (168), Expect = 2e-13
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GKT+TMG ++E G IP + HLF+ I + + +V +
Sbjct: 98 QTGAGKTWTMGG------NKEEPGAIPNSFKHLFDAINSSSSNQ--------NFLVIGSY 143
Query: 63 LELYNEEV 70
LELYNEE+
Sbjct: 144 LELYNEEI 151
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 92.6 bits (231), Expect = 8e-22
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL D + +K+ E S YV G + ++ S ++ + + +G SRT
Sbjct: 154 KVRDLLDPKGS------RQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTV 207
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGE 266
A+T MN +SSRSHA+F + + GE
Sbjct: 208 AATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241
Score = 66.8 bits (164), Expect = 7e-13
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTGSGK+YTM GT + G+IPR + LFE Q + + V+
Sbjct: 101 QTGSGKSYTMMGTA-------DQPGLIPRLCSGLFERTQ-------KEENEEQSFKVEVS 146
Query: 62 FLELYNEEV 70
++E+YNE+V
Sbjct: 147 YMEIYNEKV 155
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 92.4 bits (230), Expect = 1e-21
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+ DL G + I+ + VT A + +E L +R
Sbjct: 181 TVRDLLATGTRKGQGG-ECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAV 239
Query: 233 ASTQMNSQSSRSHAIFTLHIQQK 255
A T N +SSRSH++F L I +
Sbjct: 240 ARTAQNERSSRSHSVFQLQISGE 262
Score = 75.8 bits (187), Expect = 8e-16
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM G ++ G+IPRA+ HLF Q ++ Q A +
Sbjct: 124 QTGSGKTFTM-EGGPGG-DPQLEGLIPRALRHLFSVAQELSGQGW-------TYSFVASY 174
Query: 63 LELYNEEV 70
+E+YNE V
Sbjct: 175 VEIYNETV 182
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 91.1 bits (227), Expect = 3e-21
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 173 QIIDLFD---DTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALS 229
I+DL + ++ +K I+ H+ + +T TS + S + L++
Sbjct: 144 NIVDLLRSDNNNKEDTSIGLKHEIR-HDQETKTTTITNVTSCKLESEEMVEIILKKANKL 202
Query: 230 RTTASTQMNSQSSRSHAIFTLHIQQK 255
R+TAST N SS SH+IF +H+
Sbjct: 203 RSTASTASNEHSSASHSIFIIHLSGS 228
Score = 68.4 bits (168), Expect = 2e-13
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 17/69 (24%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTGSGKT+TM G GIIP I+H+F I + + + V +
Sbjct: 93 QTGSGKTFTMLNPG---------DGIIPSTISHIFNWINKLKTKGW-------DYKVNCE 136
Query: 62 FLELYNEEV 70
F+E+YNE +
Sbjct: 137 FIEIYNENI 145
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 91.1 bits (227), Expect = 3e-21
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++DL + + + I +DS + V T SI + +E +++G+ R T
Sbjct: 140 TLVDLLLPKQA-----KRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHT 194
Query: 233 ASTQMNSQSSRSHAIFTLHIQQK 255
T MN QSSRSH I ++ I+
Sbjct: 195 TGTLMNEQSSRSHLIVSVIIEST 217
Score = 70.7 bits (174), Expect = 3e-14
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+T+ G ++ G+ PRA++ LF ++ + + ++A
Sbjct: 88 QTGSGKTFTI-YG-----ADSNPGLTPRAMSELFRIMKKDSNKF--------SFSLKAYM 133
Query: 63 LELYNEEV 70
+ELY + +
Sbjct: 134 VELYQDTL 141
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 90.4 bits (225), Expect = 8e-21
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL + K+ +++ EDS + V G + A + + + G+ RT+
Sbjct: 222 KVFDLLNK---------KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTS 272
Query: 233 ASTQMNSQSSRSHAIFTLHIQQK 255
T NS SSRSHA F + ++ K
Sbjct: 273 GQTFANSNSSRSHACFQILLRTK 295
Score = 76.9 bits (190), Expect = 4e-16
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TMG GI A +F Q + V F
Sbjct: 163 QTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKN-------QPRYRNLNLEVYVTF 215
Query: 63 LELYNEEV 70
E+YN +V
Sbjct: 216 FEIYNGKV 223
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 90.0 bits (224), Expect = 9e-21
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 173 QIIDLFD---DTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALS 229
I+DL + ++ +K I+ H+ + +T TS + S + L++
Sbjct: 200 NIVDLLRSDNNNKEDTSIGLKHEIR-HDQETKTTTITNVTSVKLESEEMVEIILKKANKL 258
Query: 230 RTTASTQMNSQSSRSHAIFTLHIQQK 255
R+TAST N SSRSH+IF +H+
Sbjct: 259 RSTASTASNEHSSRSHSIFIIHLSGS 284
Score = 67.7 bits (166), Expect = 5e-13
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TM GIIP I+H+F I + + + V A+F
Sbjct: 149 QTGSGKTFTM-LN-------PGDGIIPSTISHIFNWINKLKTKGW-------DYKVNAEF 193
Query: 63 LELYNEEV 70
+E+YNE +
Sbjct: 194 IEIYNENI 201
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 89.2 bits (222), Expect = 1e-20
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+ DL T + T + S + + L G +R
Sbjct: 163 KPFDLLGSTP--------------HMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRV 208
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKRLV 258
T MNS SSRSHAI T+H++ K
Sbjct: 209 RPTNMNSNSSRSHAIVTIHVKSKTHH 234
Score = 85.7 bits (213), Expect = 2e-19
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTG+GK+Y+MG ++ E LGI+PRA+ +FE + E + + V A F
Sbjct: 103 QTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE------NNKDAIQVYASF 156
Query: 63 LELYNEEV 70
+E+YNE+
Sbjct: 157 IEIYNEKP 164
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 89.2 bits (222), Expect = 1e-20
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 173 QIIDLFDDTRD-----YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGA 227
I+DL D + L K +I+ H+ Y+T T + S + L++ +
Sbjct: 145 TILDLLRDFKSHDNIDEILDSQKHDIR-HDHEKQGTYITNVTRMKMTSTSQVDTILKKAS 203
Query: 228 LSRTTASTQMNSQSSRSHAIFTLHIQQK 255
R+TA+T+ N +SSRSH++F +HI +
Sbjct: 204 KMRSTAATRSNERSSRSHSVFMVHINGR 231
Score = 67.6 bits (166), Expect = 4e-13
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 17/69 (24%)
Query: 3 QTGSGKTYTM-GTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQ 61
QTGSGKTYTM G G+IP ++H+F+ N+ E+ ++ +
Sbjct: 94 QTGSGKTYTMLNAG---------DGMIPMTLSHIFKWTANLKERGW-------NYEMECE 137
Query: 62 FLELYNEEV 70
++E+YNE +
Sbjct: 138 YIEIYNETI 146
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 88.8 bits (221), Expect = 2e-20
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL + K+ +++ ED + V G + SA + + + G+ RT+
Sbjct: 202 KLFDLLNK---------KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTS 252
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKR 256
T NS SSRSHA F + ++ K
Sbjct: 253 GQTFANSNSSRSHACFQIILRAKG 276
Score = 77.3 bits (191), Expect = 2e-16
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKT+TMG GI A +F Q + V F
Sbjct: 143 QTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLK-------NQPCYRKLGLEVYVTF 195
Query: 63 LELYNEEV 70
E+YN ++
Sbjct: 196 FEIYNGKL 203
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 88.5 bits (220), Expect = 2e-20
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
++ DL + + E+ + V + + +E + + G L R
Sbjct: 150 KLYDLLQK---------RKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKI 200
Query: 233 ASTQMNSQSSRSHAIFTLHIQQKR 256
N +SSRSHAI + ++
Sbjct: 201 GVNSQNDESSRSHAILNIDLKDIN 224
Score = 70.0 bits (172), Expect = 6e-14
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM G + + GI A +F + + + F
Sbjct: 93 QTGSGKTYTML-GSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDN--------TKGIFISF 143
Query: 63 LELYNEEV 70
E+Y ++
Sbjct: 144 YEIYCGKL 151
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 88.5 bits (220), Expect = 4e-20
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 173 QIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTT 232
+ DL + + I++ +++ + IYV+ T +++ + + ++R T
Sbjct: 200 VLYDLLSN------EQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRAT 253
Query: 233 ASTQMNSQSSRSHAIFTLHIQQK 255
AST N +SSRSHA+ L + +
Sbjct: 254 ASTAGNERSSRSHAVTKLELIGR 276
Score = 71.1 bits (175), Expect = 3e-14
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 3 QTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQAQF 62
QTGSGKTYTM G E +G+IPR + LF+ I+ E ++A F
Sbjct: 147 QTGSGKTYTM-DG-----VPESVGVIPRTVDLLFDSIRGYRNLGW-------EYEIKATF 193
Query: 63 LELYNEEV 70
LE+YNE +
Sbjct: 194 LEIYNEVL 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 1e-05
Identities = 45/291 (15%), Positives = 79/291 (27%), Gaps = 105/291 (36%)
Query: 19 DVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDT-------------------------- 52
D+ E+L PR + I IAE R T
Sbjct: 317 DLPREVLTTNPRRL-----SI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 53 ------------PPEVVVQAQFLELY--NEEVSGLEHITCVQAHSIYSSSDSDSNSEDRQ 98
PP + L L + S + + + H YS + E
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHK-YSLVEKQPK-ESTI 426
Query: 99 SVDSAYSAELANLTTEIDIKQKLIEELEKS-----------------------HRRMQGI 135
S+ S Y L E + + +++ H ++ I
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNI 484
Query: 136 KQH---------YEDKFQQLQAKIRSTEEERDKVLASLNKNNTFRF---QIIDLFDDTRD 183
+ + D F+ L+ KIR + + LN +F I D D +
Sbjct: 485 EHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYE 542
Query: 184 YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMN---------ALRQ 225
++ + + E ++ SK + A+ A +Q
Sbjct: 543 RLVNAILDFLPKIE---ENLIC----SKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 35.2 bits (80), Expect = 0.024
Identities = 40/284 (14%), Positives = 88/284 (30%), Gaps = 41/284 (14%)
Query: 29 PRAITHLFEGIQNIAEQARQNGDTPP----EVVVQAQFLELYNEEVSGLEHITCVQAH-- 82
P +T ++ I ++ R D V +L+L + + L V
Sbjct: 105 PSMMTRMY-----IEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGV 158
Query: 83 -----SIYSSSDSDSNSEDRQSVDSAYSAELANLTTE---IDIKQKLIEELEKSHRRMQG 134
+ + S + + L N + +++ QKL+ +++ +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 135 IKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNTFRFQIIDLFD-------DTRDYGLS 187
+ + + +QA++R + + L N + + F+ TR ++
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 188 -KMKSNIKIHEDSGHSIYV-TGATSKSI--RSAQEAMNALRQGALSRTTASTQMNSQSSR 243
+ + H H T KS+ + L + L+ + ++S R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 244 SHAI---FTLHIQQKRL-------VKVEDPEGEIGEFLLFLTFP 277
H+ +L + V +P F FP
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Score = 35.2 bits (80), Expect = 0.027
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 43/159 (27%)
Query: 124 ELEKSHRRMQGIKQHYEDKF------QQLQAKIRS--TEEERDKVLASLNKNNTFRF--- 172
E + + + I +ED F + +Q +S ++EE D ++ S + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 173 -------QIIDLFDDT---RDYG--LSKMKS-------NIKIHEDSGHSIYVTGAT-SKS 212
+++ F + +Y +S +K+ +++ + +Y +K
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 213 IRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLH 251
S + LRQ AL R +
Sbjct: 130 NVSRLQPYLKLRQ-AL-----------LELRPAKNVLID 156
Score = 31.0 bits (69), Expect = 0.49
Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 47/223 (21%)
Query: 1 MLQTGSGKTY-TMGTGFETDVSEEMLGII----------PRAITHLFEGIQNIAEQARQN 49
+L GSGKT+ + V +M I P + E +Q + Q N
Sbjct: 158 VL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---LEMLQKLLYQIDPN 212
Query: 50 GDTPPEVVVQAQFLELYNEEVSGLEHITCVQAHSIYSSS----DSDSNSEDRQSVDSAYS 105
+ + + ++L + + + Y + N ++ ++ + A++
Sbjct: 213 WTSRSD---HSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLL---NVQNAKAWN-AFN 263
Query: 106 AE---LANLTT-EIDIKQKLIEELEKSHRRMQGIKQHY-EDKFQQLQAKIRSTEEERDKV 160
L LTT + L H + D+ + L K +
Sbjct: 264 LSCKIL--LTTRFKQVTDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 161 LASLNKNNTFRFQII--------DLFDDTRDYGLSKMKSNIKI 195
N R II +D+ + K+ + I+
Sbjct: 321 EVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 34.4 bits (79), Expect = 0.042
Identities = 12/68 (17%), Positives = 33/68 (48%)
Query: 95 EDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTE 154
E+ + AE + ++ ++ +EE E + +++Q K + K ++++ I E
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 155 EERDKVLA 162
++ +K+
Sbjct: 997 DQNNKLTK 1004
Score = 31.7 bits (72), Expect = 0.35
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 102 SAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHY-------EDKFQQLQAKIRSTE 154
+ + + ++ L + ++K +ELEK R+++G + + +L+A++ E
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094
Query: 155 EERDKVLASLNKNNT 169
EE LA L +
Sbjct: 1095 EELQAALARLEDETS 1109
Score = 31.0 bits (70), Expect = 0.56
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 88 SDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQ 147
SD + Q+ + A+LA E+ +E+ + E LQ
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 148 AKIRSTEEERDKV 160
+ S + R+K
Sbjct: 1130 EDLESEKAARNKA 1142
Score = 29.8 bits (67), Expect = 1.1
Identities = 10/65 (15%), Positives = 22/65 (33%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
++ + + + K + LE+ + E+K + L E ++ L K
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 167 NNTFR 171
R
Sbjct: 1051 EEKSR 1055
Score = 29.8 bits (67), Expect = 1.2
Identities = 9/61 (14%), Positives = 28/61 (45%)
Query: 106 AELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLN 165
L + I+ +++ ++L+ ++MQ E++ ++ +A + + E+ +
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 166 K 166
K
Sbjct: 987 K 987
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
L E Q+ + +LE+ + +Q + + KI+ E++ + NK
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 28.6 bits (64), Expect = 2.9
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 106 AELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKF-------QQLQAKIRSTEEERD 158
E ++L +I Q I EL+ + + Q + KIR E
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 159 KVLASLNK 166
+ L
Sbjct: 1127 DLQEDLES 1134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.080
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 9/34 (26%)
Query: 186 LSKMKSNIKIHE-DSGHSIYVTGATSKSIRSAQE 218
L K+++++K++ DS A + +I++ E
Sbjct: 22 LKKLQASLKLYADDS--------APALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.10
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 55/137 (40%)
Query: 176 DLFDD-----TRDYGLSKMKSNIKIHEDSGHSIYV--TGATSKSIRSAQEAM-------- 220
D+++ YG S + I ++ ++ + G K IR AM
Sbjct: 1644 DVWNRADNHFKDTYGFSI----LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 221 ------------NALR-------QGALSRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVE 261
+G LS T TQ A+ + +K +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSA-TQFTQP--------ALTLMEKAAFEDLKSK 1750
Query: 262 --DPEGE------IGEF 270
P +GE+
Sbjct: 1751 GLIPADATFAGHSLGEY 1767
Score = 28.5 bits (63), Expect = 3.6
Identities = 41/251 (16%), Positives = 80/251 (31%), Gaps = 70/251 (27%)
Query: 16 FETDV-----SEEMLGIIPRAITHL-FEGIQNIAEQARQNGDTPPEVVV--QAQFLELYN 67
FET V +E++ I T F + + Q T P + + +A F +L +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QF--TQPALTLMEKAAFEDLKS 1749
Query: 68 EEVSGLEHITCVQA-HSI--YS--SSDSDSNS-ED-------RQSVDSAYSAELANLTTE 114
+ GL A HS+ Y+ +S +D S E R +
Sbjct: 1750 K---GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR--------GMTMQVAVP 1798
Query: 115 IDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNTFRFQI 174
D EL +S+ M I + ++E V+ + K + +I
Sbjct: 1799 RD-------ELGRSNYGMIAINPG--------RVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 175 IDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAS 234
++ Y N+ YV +++ + +N ++ +
Sbjct: 1844 VN-------Y-------NV-----EN-QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 235 TQMNSQSSRSH 245
++ + H
Sbjct: 1884 KSLSLEEVEGH 1894
Score = 28.1 bits (62), Expect = 4.4
Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 36/120 (30%)
Query: 29 PRAITHLFEGIQNIA-----EQARQNGDTPP----EVVVQAQFLELYNEEVSGLEHITCV 79
P+++ L ++ +Q+R P ++ +FL +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRI-----PFSERKLKFSNRFLP-----------VA-- 424
Query: 80 QA--HSIYSSSDSDSNSEDRQSVDSAYSA-ELA----NLTTEIDIKQKLIEELEKSHRRM 132
+ HS SD ++D + +++A ++ + D+ + L + +
Sbjct: 425 -SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIVDC 482
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 30.6 bits (69), Expect = 0.17
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 111 LTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNT 169
L + + E+ E ++ + + E++ Q LQ K++ TE+E +K S+ +
Sbjct: 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 30.2 bits (68), Expect = 0.19
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 122 IEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNT 169
E+ E + + + ED QL+ ++R TE+ RD+VL L+K+
Sbjct: 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family
member 1; tropomysoin, overlap complex, coiled-coils,
contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB:
3mud_C*
Length = 75
Score = 29.1 bits (65), Expect = 0.35
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 105 SAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASL 164
A + + ++ + + E + + K Y K + ++ + E E D VL +
Sbjct: 1 GASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRI 60
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.41
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 118 KQKLIEEL-EKSHRRMQGIKQ-----------HYEDKFQQLQAKIRSTEEE----RD 158
++K ++EL S Q ++ ++ ++ + R ++ D
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A
{Saccharomyces cerevisiae} PDB: 3vp8_A
Length = 92
Score = 29.1 bits (65), Expect = 0.42
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 85 YSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQ 144
+ ++N+ Q+ Y ++ E+ + + E E +HR+M K YE++ +
Sbjct: 23 FLQVSQEANTYRLQNQKD-YDFKMNQQLAEMQQIRNTVYERELTHRKM---KDAYEEEIK 78
Query: 145 QLQAKIRSTEEERDKVLA 162
L+ + E+RD +A
Sbjct: 79 HLKLGL----EQRDHQIA 92
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.46
Identities = 10/61 (16%), Positives = 24/61 (39%)
Query: 106 AELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLN 165
++ L +ID + K + L + ++ +K + ++R +EEE +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 166 K 166
Sbjct: 988 S 988
Score = 30.8 bits (70), Expect = 0.63
Identities = 9/61 (14%), Positives = 27/61 (44%)
Query: 106 AELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLN 165
E+A L E+ Q + +E+ + + + + ++ +++ +EE ++ +
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050
Query: 166 K 166
K
Sbjct: 1051 K 1051
Score = 28.2 bits (63), Expect = 3.8
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 118 KQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNTFRFQIIDL 177
+ K ++ +S R + + E+K QLQ KI +E +L +N
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI---TYSTE 961
Query: 178 FDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQ 225
+ L +++ E+ + + S QE + LR+
Sbjct: 962 TEK-----LRSDVERLRMSEEEAK------NATNRVLSLQEEIAKLRK 998
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 29.4 bits (67), Expect = 0.60
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 108 LANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156
+ NL E+ + + LE S ++ K Y + Q+Q I S EE+
Sbjct: 47 MQNLEIELQSQLSMKASLENS---LEETKGRYCMQLAQIQEMIGSVEEQ 92
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 28.6 bits (65), Expect = 1.0
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 108 LANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156
+ L EID +K L+ + + +Q E + + K+ EE
Sbjct: 45 IQRLRAEIDNVKKQCANLQNA---IADAEQRGELALKDARNKLAELEEA 90
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 29.9 bits (66), Expect = 1.0
Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 15/138 (10%)
Query: 61 QFLELYNEEVSGLEHITCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEID---- 116
QF N I S + ED+ + Y + N +ID
Sbjct: 610 QFGAQANVI---GPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEG 666
Query: 117 IKQKLIEELEKSHR----RMQGIKQHYEDKFQQLQAKIRSTEEE---RDKVLASLNKNNT 169
Q++ E L ++ M+ I+ +E + I E + RD S + N
Sbjct: 667 DHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNE 726
Query: 170 FRFQIIDLFDDTRDYGLS 187
FR + FD + +
Sbjct: 727 FR-ASFNHFDRKKTGMMD 743
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 29.5 bits (66), Expect = 1.1
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 118 KQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEE 155
K+K EL K + I ++ L+ KI+ +E
Sbjct: 188 KEKWQNELNKLTFALNSIPNSKMEERAILEDKIQDIKE 225
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 28.0 bits (63), Expect = 1.2
Identities = 4/45 (8%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 112 TTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156
+ ++ Q + E +++ ++ + + + E E
Sbjct: 2 SCQLSQLQCQLAAKE---AKLRDLEDSLARERDTSRRLLAEKERE 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 27.5 bits (61), Expect = 1.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 123 EELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNT 169
E+ E + + + ED+ LQ K++ TE+E DK SL
Sbjct: 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 28.8 bits (64), Expect = 2.1
Identities = 14/72 (19%), Positives = 29/72 (40%)
Query: 95 EDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTE 154
E + Y E+ L+ ++ + E E+S +++ ED+ + K ++
Sbjct: 212 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 271
Query: 155 EERDKVLASLNK 166
EE D L +
Sbjct: 272 EELDHALNDMTS 283
Score = 28.5 bits (63), Expect = 2.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
++ L + + +E E + + + ED+ LQ K+++TE+E DK +L
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.6 bits (63), Expect = 2.3
Identities = 9/42 (21%), Positives = 26/42 (61%)
Query: 118 KQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDK 159
+ +L E ++ H + +K+ ++D+ ++L+ K +S ++E +
Sbjct: 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNA 395
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 28.4 bits (63), Expect = 2.8
Identities = 8/93 (8%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
+ + + + + + + M ++K + Q + + + + +
Sbjct: 94 QEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMEL 153
Query: 167 NNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDS 199
+ I D D+ L +++ I
Sbjct: 154 HYN---YIKDNLDNNIPSSLRVLRAVIDSLHKK 183
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 27.8 bits (61), Expect = 3.5
Identities = 13/93 (13%), Positives = 35/93 (37%)
Query: 91 DSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKI 150
+ S +L+ + K + ELE+++ ++ K+ + + ++
Sbjct: 80 EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL 139
Query: 151 RSTEEERDKVLASLNKNNTFRFQIIDLFDDTRD 183
E + + L++ + + L D+ RD
Sbjct: 140 NQAIERNAFLESELDEKESLLVSVQRLKDEARD 172
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 27.2 bits (60), Expect = 3.8
Identities = 12/76 (15%), Positives = 33/76 (43%)
Query: 91 DSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKI 150
++ +E + Y E+ L+ ++ + E E+S +++ ED+ + K
Sbjct: 62 EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 121
Query: 151 RSTEEERDKVLASLNK 166
++ EE ++ + +
Sbjct: 122 KAISEEMKQLEDKVEE 137
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.2 bits (60), Expect = 3.9
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 105 SAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASL 164
E +L ++ +Q + + E+ ++ K E K +++ ++ EE ++ A
Sbjct: 47 LQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKK 106
Query: 165 NK 166
K
Sbjct: 107 RK 108
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 27.4 bits (60), Expect = 5.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDK 159
E+++L EID + LI E K + K+ L+ + + + + K
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK 64
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary
complex, hydrolase/DNA complex; HET: ADP; 2.10A
{Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B
1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.9 bits (63), Expect = 5.1
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 4 TGSGKTYTM 12
TG+GKT+T+
Sbjct: 41 TGTGKTFTV 49
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 25.9 bits (58), Expect = 5.2
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 114 EIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEE 156
E+D + E LE R+M+ +++++ + Q I ++E
Sbjct: 2 EVDALKGTNESLE---RQMREMEENFAVEAANYQDTIGRLQDE 41
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure,
structural genomics, P protein structure initiative;
HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Length = 247
Score = 27.5 bits (61), Expect = 5.2
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQH---YEDKFQQLQAKIR 151
++ + +I +K +L ++LEK + ++ L +I
Sbjct: 50 DMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSLLNEID 97
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 27.5 bits (62), Expect = 5.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 4 TGSGKTYTM 12
TG+GKT TM
Sbjct: 37 TGTGKTVTM 45
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 27.3 bits (61), Expect = 5.6
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 116 DIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASL----NKNNTFR 171
+I QK ++E + + + K ++ K + ++ +A KN R
Sbjct: 5 EILQKFLDEAQSKKITKEEFANEFL-KLKRQSTKYK-ADKTYPTTVAEKPKNIKKN---R 59
Query: 172 FQIIDLFDDTR 182
++ I +D +R
Sbjct: 60 YKDILPYDYSR 70
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 26.8 bits (59), Expect = 7.0
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 111 LTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDK 159
E + Q +I+ + + Q + + K ++L+ KI E+ +
Sbjct: 193 WRHEANTWQNIIQTISNN----QPVSTENQAKIRELEHKIALVEDVLKE 237
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme,
ATP-binding, DNA-binding, H nucleotide-binding, serine
protease, stress respo; 2.60A {Escherichia coli}
Length = 252
Score = 26.7 bits (60), Expect = 7.7
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 109 ANLTTEIDIKQKLIEE------LEKSHRRMQGIKQHYEDKFQQLQAKIRS 152
A++ ++ KQ ++E LE M+ E Q++ +IR+
Sbjct: 178 AHMPLKLADKQSVLEMSDVNERLEYLMAMMES-----EIDLLQVEKRIRN 222
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 27.1 bits (60), Expect = 8.1
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 107 ELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNK 166
E ++ +DI+ I+EL + QGI D L + + E ++ + N
Sbjct: 326 EFIDMPDNVDIESLNIKELLVDYANRQGIDG---DLVLSLYKALLNNENWKELLDEYYNT 382
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 26.5 bits (58), Expect = 9.1
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 119 QKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLNKNNTFRFQI 174
Q IE L ++++ + L+ K+ E + F ++I
Sbjct: 2 QDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEAS--------TYDGVFIWKI 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.342
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,050,760
Number of extensions: 227703
Number of successful extensions: 791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 162
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.8 bits)