RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15014
(286 letters)
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 51.5 bits (122), Expect = 4e-08
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 176 DLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTAST 235
+LFD + + + + + G ++ + E L +GA RTTA+T
Sbjct: 150 ELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 209
Query: 236 QMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLF 273
MN+ SSRSH++F++ I K + +IG+ L
Sbjct: 210 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLV 247
Score = 32.3 bits (72), Expect = 0.053
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 1 MLQTGSGKTYTMGTGFETDVS-----EEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPE 55
QTG+GKT+TM + + + GIIPR + +FE + D E
Sbjct: 87 YGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE----------KLTDNGTE 136
Query: 56 VVVQAQFLELYNEEV 70
V+ LE+YNEE+
Sbjct: 137 FSVKVSLLEIYNEEL 151
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 50.8 bits (120), Expect = 7e-08
Identities = 27/95 (28%), Positives = 42/95 (44%)
Query: 179 DDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMN 238
+ RD K K N+++ E YV + ++ S + + + G RT A+T MN
Sbjct: 149 ERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMN 208
Query: 239 SQSSRSHAIFTLHIQQKRLVKVEDPEGEIGEFLLF 273
SSRSHA+F + QKR + E +
Sbjct: 209 ETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISL 243
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 47.6 bits (112), Expect = 6e-07
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 165 NKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALR 224
N T R ++++ + L+ N+ +HE+ +YV G + S QE +R
Sbjct: 128 NIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMR 187
Query: 225 QGALSRTTASTQMNSQSSRSHAIFTLHIQQKR 256
+G +R A+T MN +SSRSH+IF + I QK
Sbjct: 188 RGGNARAVAATNMNQESSRSHSIFVITITQKN 219
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 46.4 bits (109), Expect = 2e-06
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 165 NKNNTFRFQIIDLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALR 224
N + +++ D L K+N+ +HED YV G T + + S E M+ +
Sbjct: 123 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 182
Query: 225 QGALSRTTASTQMNSQSSRSHAIFTLHIQQKRLVKVEDPEGEI 267
+G +R A T MN SSRSH+IF ++++Q+ + G++
Sbjct: 183 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKL 225
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 44.2 bits (103), Expect = 7e-06
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 173 QIIDLF--DDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSR 230
I+DL D+ S + H+ + +T TS + S + L++ R
Sbjct: 142 NIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLR 201
Query: 231 TTASTQMNSQSSRSHAIFTLHIQQKR 256
+TAST N SS SH+IF +H+
Sbjct: 202 STASTASNEHSSASHSIFIIHLSGSN 227
Score = 26.5 bits (57), Expect = 3.9
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Query: 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQA 60
QTGSGKT+TM GIIP I+H+F I + + V
Sbjct: 89 YGQTGSGKTFTMLN--------PGDGIIPSTISHIFNWINKLKTKGWD-------YKVNC 133
Query: 61 QFLELYNEEVSGL 73
+F+E+YNE + L
Sbjct: 134 EFIEIYNENIVDL 146
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 39.2 bits (90), Expect = 4e-04
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 192 NIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLH 251
+ I +DS + V T SI + +E +++G+ R T T MN QSSRSH I ++
Sbjct: 149 KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVI 208
Query: 252 IQQKRL 257
I+ L
Sbjct: 209 IESTNL 214
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 34.6 bits (78), Expect = 0.010
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 184 YGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSR 243
Y L + + + E+ + V + + +E + + G L R N +SSR
Sbjct: 152 YDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSR 211
Query: 244 SHAIFTLHIQQKR 256
SHAI + ++
Sbjct: 212 SHAILNIDLKDIN 224
Score = 32.7 bits (73), Expect = 0.046
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 9/142 (6%)
Query: 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQA 60
QTGSGKTYTM + + GI A +F D +
Sbjct: 91 YGQTGSGKTYTMLG-SQPYGQSDTPGIFQYAAGDIF--------TFLNIYDKDNTKGIFI 141
Query: 61 QFLELYNEEVSGLEHITCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQK 120
F E+Y ++ L + A + V + L + + K
Sbjct: 142 SFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIG 201
Query: 121 LIEELEKSHRRMQGIKQHYEDK 142
+ + ++S R + +D
Sbjct: 202 VNSQNDESSRSHAILNIDLKDI 223
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 30.6 bits (68), Expect = 0.20
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 1 MLQTGSGKTYTMGTGFETDVSEEMLGIIPRAITHLFEGIQNIAEQARQNGDTPPEVVVQA 60
QTGSGKT+TMG GI A +F Q + V
Sbjct: 120 YGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKN-------QPRYRNLNLEVYV 172
Query: 61 QFLELYNEEVSGLEH 75
F E+YN +V L +
Sbjct: 173 TFFEIYNGKVFDLLN 187
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 245
Score = 29.8 bits (67), Expect = 0.30
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 92 SNSEDRQSVDSAYSA--ELANLTTEIDIKQKLIEELEK---SHRRMQGIKQHYEDKFQQL 146
S D + A ++ + +I +K +L ++LEK S+R ++ ++ L
Sbjct: 31 SGFADNHQYQLFFRALFDMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSL 90
Query: 147 QAKI 150
+I
Sbjct: 91 LNEI 94
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 27.5 bits (60), Expect = 1.9
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 113 TEIDIK--QKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASLN--KNN 168
T I+ + + EL K +KQ + ++F+ LQ + R + N KN
Sbjct: 1 TRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKN- 59
Query: 169 TFRFQIIDLFDDTR 182
R++ I FD TR
Sbjct: 60 --RYKNILPFDHTR 71
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 25.5 bits (56), Expect = 4.0
Identities = 15/86 (17%), Positives = 32/86 (37%)
Query: 77 TCVQAHSIYSSSDSDSNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIK 136
+ + S+ +S + L+T+I +K + I +L S +
Sbjct: 27 KNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSA 86
Query: 137 QHYEDKFQQLQAKIRSTEEERDKVLA 162
+ K LQ K+ E+E+ + +
Sbjct: 87 EEQLRKIDMLQKKLVEVEDEKIEAIK 112
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 26.6 bits (58), Expect = 4.8
Identities = 8/55 (14%), Positives = 15/55 (27%)
Query: 201 HSIYVTGATSKSIRSAQEAMNALRQGALSRTTASTQMNSQSSRSHAIFTLHIQQK 255
+V+ S + + + + A T N SSR +
Sbjct: 109 FLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAV 163
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 24.3 bits (53), Expect = 5.9
Identities = 5/62 (8%), Positives = 24/62 (38%)
Query: 105 SAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDKVLASL 164
+ L E ++ ++ ++ + +A+++ E+ +++ +L
Sbjct: 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 62
Query: 165 NK 166
++
Sbjct: 63 SQ 64
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 24.5 bits (53), Expect = 6.9
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 176 DLFDDTRDYGLSKMKSNIKIHEDSGHSIYVTGATSKSIRSAQEAMNALRQG 226
++ + +G K K +G + + A++A NAL
Sbjct: 24 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 74
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 165
Score = 24.9 bits (54), Expect = 8.4
Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 35/167 (20%)
Query: 34 HLFEGIQNIAEQARQNGDTPPEVVVQA--QFLELYNEEVSGLEHITCVQAHSIYSSSDSD 91
+FE IAE+A G E+ +A L S E + ++AH + +
Sbjct: 13 GVFEHSPFIAERAYDAGGAGLELTAKAVHGALCAQFRVASEAERLGVLRAHPDLAGKLAI 72
Query: 92 SNSEDRQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKF-------- 143
+ S + A L L+ + H R + Y +KF
Sbjct: 73 AGELTADSRNEQAGAGLDRLSPQE-------------HARFTQLNSAYTEKFGFPFIIAV 119
Query: 144 ---------QQLQAKI-RSTEEERDKVLASLNKNNTFRFQIIDLFDD 180
+I + +E + K R + +
Sbjct: 120 KGLNRHDILSAFDTRIDNNAAQEFATATGQVEKIAWLRLA--SMLPE 164
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
(Mamestra brassicae) [TaxId: 55057]}
Length = 101
Score = 24.2 bits (53), Expect = 9.0
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 118 KQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRSTEEERDK 159
Q+ + ++R ++ + ++ + +++L AK T R K
Sbjct: 59 NQE-----KGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKK 95
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 24.5 bits (53), Expect = 9.6
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 97 RQSVDSAYSAELANLTTEIDIKQKLIEELEKSHRRMQGIKQHYEDKFQQLQAKIRS---T 153
R + ++A +L+ D + S M E + ++L A+ R+ +
Sbjct: 62 RGTNNAATLEKLSMWDDIADK-NIAEQTFTDSLNHM--FDSLLELRQEELIARERTHGLS 118
Query: 154 EEERDKVLASLNK 166
EER L +LN+
Sbjct: 119 NEER-LELWTLNQ 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.342
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 952,818
Number of extensions: 41336
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 33
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)