BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15016
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 29/107 (27%)

Query: 6    RNLTDAKKEYQKLLRSQS----SYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQE 61
            R + +  KEY+ LL   +    +Y  + + LRS+V  +R         M EE  K+    
Sbjct: 935  RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR---------MSEEEAKNATNR 985

Query: 62   ILR-NREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEEWCSGY 107
            +L    EIAKL+KE  + Q       ++KKT         EEW   Y
Sbjct: 986  VLSLQEEIAKLRKELHQTQ-------TEKKTI--------EEWADKY 1017


>pdb|3ABO|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
 pdb|3ABO|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
 pdb|3ABQ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And
           2-Amino-1-Propanol
 pdb|3ABQ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And
           2-Amino-1-Propanol
 pdb|3ABR|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
           Form)
 pdb|3ABR|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
           Form)
 pdb|3ABS|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escheri Complexed With Adeninylpentylcobalamin And
           Ethanolamine
 pdb|3ABS|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escheri Complexed With Adeninylpentylcobalamin And
           Ethanolamine
          Length = 306

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 55  NKHKEQEI--LRNREIAKL----KKESRRAQNLIRNLESDKKTKEVILKRKQEEW 103
           N H+   +  LR   +A++         R Q L+R L    ++K+ +LK   EEW
Sbjct: 71  NPHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEEW 125


>pdb|3ANY|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And
           (R)-2-Amino-1-Propanol
 pdb|3ANY|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And
           (R)-2-Amino-1-Propanol
 pdb|3AO0|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And
           (S)-2-Amino-1-Propanol
 pdb|3AO0|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase From
           Escherichia Coli Complexed With Cn-Cbl And
           (S)-2-Amino-1-Propanol
          Length = 263

 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 55  NKHKEQEI--LRNREIAKL----KKESRRAQNLIRNLESDKKTKEVILKRKQEEW 103
           N H+   +  LR   +A++         R Q L+R L    ++K+ +LK   EEW
Sbjct: 28  NPHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEEW 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.126    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,167,629
Number of Sequences: 62578
Number of extensions: 100705
Number of successful extensions: 399
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 71
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)