Query psy15016
Match_columns 131
No_of_seqs 109 out of 119
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:16:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244|consensus 99.8 6.6E-18 1.4E-22 156.8 12.2 110 2-111 554-663 (913)
2 PRK11637 AmiB activator; Provi 84.5 26 0.00056 30.3 15.5 71 17-87 181-254 (428)
3 COG2841 Uncharacterized protei 83.8 4 8.7E-05 28.3 5.3 48 3-50 7-62 (72)
4 PF15619 Lebercilin: Ciliary p 76.2 38 0.00081 27.0 9.7 72 21-110 6-77 (194)
5 PF09726 Macoilin: Transmembra 75.5 75 0.0016 30.1 14.3 89 15-103 476-575 (697)
6 PRK11637 AmiB activator; Provi 73.2 61 0.0013 28.0 13.7 86 16-101 169-254 (428)
7 PF08317 Spc7: Spc7 kinetochor 70.1 61 0.0013 27.3 9.7 8 101-108 276-283 (325)
8 PF09755 DUF2046: Uncharacteri 70.0 73 0.0016 27.6 15.1 108 4-114 82-201 (310)
9 KOG4657|consensus 61.1 1E+02 0.0022 26.0 13.8 98 8-110 53-158 (246)
10 smart00787 Spc7 Spc7 kinetocho 59.0 93 0.002 26.5 8.9 62 12-73 217-278 (312)
11 KOG0993|consensus 53.9 1.8E+02 0.0039 26.8 11.4 40 47-86 143-182 (542)
12 PF12325 TMF_TATA_bd: TATA ele 47.8 93 0.002 23.1 6.3 36 3-41 75-110 (120)
13 PRK11415 hypothetical protein; 45.8 92 0.002 21.0 5.9 43 4-46 8-58 (74)
14 PF08614 ATG16: Autophagy prot 40.5 1.4E+02 0.003 23.2 6.6 14 94-107 180-193 (194)
15 PF11932 DUF3450: Protein of u 33.7 2.5E+02 0.0054 22.5 9.5 44 16-59 73-119 (251)
16 PF05010 TACC: Transforming ac 29.6 3.1E+02 0.0066 22.2 15.1 60 6-65 83-142 (207)
17 PRK11546 zraP zinc resistance 29.1 2.2E+02 0.0047 22.0 5.9 35 7-41 69-103 (143)
18 TIGR03185 DNA_S_dndD DNA sulfu 29.1 4.6E+02 0.0099 24.1 12.4 76 11-86 214-289 (650)
19 PF04325 DUF465: Protein of un 28.9 1.4E+02 0.0031 18.3 4.4 35 13-47 6-40 (49)
20 PF09325 Vps5: Vps5 C terminal 28.9 2.7E+02 0.0058 21.3 8.2 64 6-69 142-212 (236)
21 PF08172 CASP_C: CASP C termin 27.9 1.8E+02 0.0039 24.1 5.6 36 16-51 96-131 (248)
22 PF04111 APG6: Autophagy prote 26.8 3.9E+02 0.0085 22.6 11.9 104 3-110 16-122 (314)
23 KOG2129|consensus 26.6 5.2E+02 0.011 24.0 8.6 57 28-87 254-310 (552)
24 KOG1144|consensus 26.2 6.1E+02 0.013 25.5 9.4 23 4-26 222-244 (1064)
25 PRK13729 conjugal transfer pil 25.5 1.5E+02 0.0034 27.1 5.2 27 25-51 81-107 (475)
26 COG4942 Membrane-bound metallo 25.1 5.2E+02 0.011 23.4 11.9 32 8-39 40-71 (420)
27 KOG4403|consensus 24.8 5.5E+02 0.012 23.9 8.5 72 2-82 248-325 (575)
28 PF10481 CENP-F_N: Cenp-F N-te 24.3 2E+02 0.0043 25.0 5.3 43 66-108 25-67 (307)
29 PF10146 zf-C4H2: Zinc finger- 23.7 4.1E+02 0.0089 21.7 10.4 29 78-106 65-93 (230)
30 PF13863 DUF4200: Domain of un 22.8 2.8E+02 0.006 19.4 7.5 68 17-88 36-103 (126)
31 PF12808 Mto2_bdg: Micro-tubul 22.4 2.3E+02 0.005 18.3 4.4 42 45-86 8-49 (52)
32 PRK10884 SH3 domain-containing 22.2 4.2E+02 0.009 21.3 11.5 24 64-87 130-153 (206)
33 PF11559 ADIP: Afadin- and alp 21.7 3.3E+02 0.0072 19.9 15.2 17 94-110 133-149 (151)
34 PF10146 zf-C4H2: Zinc finger- 21.6 4.6E+02 0.0099 21.5 12.4 61 20-87 25-88 (230)
35 PF03962 Mnd1: Mnd1 family; I 21.1 4.1E+02 0.0089 20.8 11.3 70 10-91 66-135 (188)
36 KOG3990|consensus 20.4 5.5E+02 0.012 22.2 7.2 68 28-110 226-293 (305)
37 PF04977 DivIC: Septum formati 20.3 2.4E+02 0.0053 17.9 6.4 34 7-40 18-51 (80)
No 1
>KOG0244|consensus
Probab=99.75 E-value=6.6e-18 Score=156.75 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHH
Q psy15016 2 QKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNL 81 (131)
Q Consensus 2 ~~el~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~e 81 (131)
..++.+|...+.+|..|++...+++..+.+|..||..||.+||+|+++|++|+++|+.|++..+||+++|++++|+.+|+
T Consensus 554 e~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~ 633 (913)
T KOG0244|consen 554 ETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGE 633 (913)
T ss_pred HHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHhHHHHHHHHHHHHHHhhcccc
Q psy15016 82 IRNLESDKKTKEVILKRKQEEWCSGYCFVP 111 (131)
Q Consensus 82 i~kLe~~~~kQe~VLkRKtEEa~a~~krl~ 111 (131)
+..+++.+.+|..||+|+|+||+++++||.
T Consensus 634 ~~~~~~l~~~q~~vl~~kt~eas~~~krlk 663 (913)
T KOG0244|consen 634 HPKLEVLVKKQNYVLQRKTEEASAANKRLK 663 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999983
No 2
>PRK11637 AmiB activator; Provisional
Probab=84.50 E-value=26 Score=30.31 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHh
Q psy15016 17 KLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKE---ETNKHKEQEILRNREIAKLKKESRRAQNLIRNLES 87 (131)
Q Consensus 17 rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMke---Esekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~ 87 (131)
.|...+...+.....|...+.++...+..|.....+ ..............+|.+|..+..+-...|..+++
T Consensus 181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555444 44444444444455555555555555555554443
No 3
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.83 E-value=4 Score=28.34 Aligned_cols=48 Identities=13% Similarity=0.421 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy15016 3 KEMRNLTDAKKEYQKLLRSQSSYENQVKTLR--------SEVNEMRQTRVRLIRKM 50 (131)
Q Consensus 3 ~el~~Lq~~~~E~~rL~K~k~k~e~~ik~L~--------~EI~~mK~~KV~L~kqM 50 (131)
.+|..|+...--.++|--.-..-+..|.+.. .||..||++|++|=-.|
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi 62 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEI 62 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Confidence 4678888888888999999999999998876 49999999999875444
No 4
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.17 E-value=38 Score=26.99 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHhhhHhHHHHHHHHH
Q psy15016 21 SQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQ 100 (131)
Q Consensus 21 ~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~~~~kQe~VLkRKt 100 (131)
..+....+|+.|+++|.++... =..-..|.--|+.-..+.+..|.+.+.....=..+|.+-.
T Consensus 6 vlSar~~ki~~L~n~l~elq~~------------------l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAELQRK------------------LQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4455566777777777776521 1112334555555666666666666666666666666666
Q ss_pred HHHHHhhccc
Q psy15016 101 EEWCSGYCFV 110 (131)
Q Consensus 101 EEa~a~~krl 110 (131)
+|+-.++-+|
T Consensus 68 eEvr~Lr~~L 77 (194)
T PF15619_consen 68 EEVRVLRERL 77 (194)
T ss_pred HHHHHHHHHH
Confidence 6666666555
No 5
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.53 E-value=75 Score=30.12 Aligned_cols=89 Identities=24% Similarity=0.386 Sum_probs=58.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHH----------HHH-HHHHHhHHhHHHHH
Q psy15016 15 YQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNR----------EIA-KLKKESRRAQNLIR 83 (131)
Q Consensus 15 ~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~K----------Ei~-qLKke~RK~~~ei~ 83 (131)
...|...++..-..+..|.--|.+-..+|+.|=+++.+|-..-+..+....+ |-+ .+|..-+.-+.|+.
T Consensus 476 l~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~ 555 (697)
T PF09726_consen 476 LQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELK 555 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHH
Confidence 5567777788888888899999999999999999999988776655443333 222 24555555566666
Q ss_pred HHHhhhHhHHHHHHHHHHHH
Q psy15016 84 NLESDKKTKEVILKRKQEEW 103 (131)
Q Consensus 84 kLe~~~~kQe~VLkRKtEEa 103 (131)
+|..+-...+-.+..=-.|+
T Consensus 556 ~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 556 KLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66665555544444333333
No 6
>PRK11637 AmiB activator; Provisional
Probab=73.19 E-value=61 Score=28.03 Aligned_cols=86 Identities=12% Similarity=0.238 Sum_probs=66.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHhhhHhHHHH
Q psy15016 16 QKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESDKKTKEVI 95 (131)
Q Consensus 16 ~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~~~~kQe~V 95 (131)
..++........++.....++..-......+...+..+.......+..+...+..|..+-...+.++..|++....-...
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666667777888888888888888888999999999999999999999988888777
Q ss_pred HHHHHH
Q psy15016 96 LKRKQE 101 (131)
Q Consensus 96 LkRKtE 101 (131)
|.+-..
T Consensus 249 I~~l~~ 254 (428)
T PRK11637 249 IARAER 254 (428)
T ss_pred HHHHHH
Confidence 775443
No 7
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.05 E-value=61 Score=27.25 Aligned_cols=8 Identities=13% Similarity=-0.321 Sum_probs=3.2
Q ss_pred HHHHHhhc
Q psy15016 101 EEWCSGYC 108 (131)
Q Consensus 101 EEa~a~~k 108 (131)
.|+..+..
T Consensus 276 ~Ev~~Lk~ 283 (325)
T PF08317_consen 276 SEVKRLKA 283 (325)
T ss_pred HHHHHHHH
Confidence 34444433
No 8
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.96 E-value=73 Score=27.59 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhH--HH---------HHHhHHHHHHH
Q psy15016 4 EMRNLTDAKKEYQKLLRSQSSYENQVK-TLRSEVNEMRQTRVRLIRKMKEETNKHK--EQ---------EILRNREIAKL 71 (131)
Q Consensus 4 el~~Lq~~~~E~~rL~K~k~k~e~~ik-~L~~EI~~mK~~KV~L~kqMkeEsekfr--~~---------k~~r~KEi~qL 71 (131)
=|++|+...+|-..|...-++.++-+. .|..-|..|-.-||.|=..|-.|.+-+- -. ......++.+|
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~L 161 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 367888888888888766666666665 8999999999999999999988776541 11 11223344455
Q ss_pred HHHhHHhHHHHHHHHhhhHhHHHHHHHHHHHHHHhhcccchhh
Q psy15016 72 KKESRRAQNLIRNLESDKKTKEVILKRKQEEWCSGYCFVPTSV 114 (131)
Q Consensus 72 Kke~RK~~~ei~kLe~~~~kQe~VLkRKtEEa~a~~krl~~s~ 114 (131)
+++.---+|.+ +....-==+-|...++.+.+-++.|+...
T Consensus 162 r~EKVdlEn~L---E~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 162 RREKVDLENTL---EQEQEALVNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433332 11111112336667788887777775543
No 9
>KOG4657|consensus
Probab=61.14 E-value=1e+02 Score=26.00 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHH--hHHhHHHHHHH
Q psy15016 8 LTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKE--SRRAQNLIRNL 85 (131)
Q Consensus 8 Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke--~RK~~~ei~kL 85 (131)
|-..+.|..+|.+.-..++.++.+-+ +++.-|-.+.=.+.+|..-++. +...-.-..|+.++ ++..+.-=.+.
T Consensus 53 lS~~~~e~e~l~~~l~etene~~~~n----eL~~ek~~~q~~ieqeik~~q~-elEvl~~n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 53 LSQSQVELENLKADLRETENELVKVN----ELKTEKEARQMGIEQEIKATQS-ELEVLRRNLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444455555555555555444332 2444555555555555555555 33333333444433 24444444566
Q ss_pred HhhhHhHHHHHHHHHHH------HHHhhccc
Q psy15016 86 ESDKKTKEVILKRKQEE------WCSGYCFV 110 (131)
Q Consensus 86 e~~~~kQe~VLkRKtEE------a~a~~krl 110 (131)
++...+++++++||+.+ |.-.+.+|
T Consensus 128 ~~~~Ka~e~~~kRkQdsa~~~e~a~wy~dyL 158 (246)
T KOG4657|consen 128 QALSKAKENAGKRKQDSADIHEAASWYNDYL 158 (246)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHhc
Confidence 66789999999999998 44556676
No 10
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.04 E-value=93 Score=26.52 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHH
Q psy15016 12 KKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKK 73 (131)
Q Consensus 12 ~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKk 73 (131)
..++....+.....+.++..|...|.+....|..+.-.|.+-.......+.--..||..|+.
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~ 278 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKE 278 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34444555555555556666666666666666666666655555444444444555555544
No 11
>KOG0993|consensus
Probab=53.89 E-value=1.8e+02 Score=26.76 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy15016 47 IRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLE 86 (131)
Q Consensus 47 ~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe 86 (131)
|.+-++++++.|.--..=++||..|++.--+.+.-|.-|+
T Consensus 143 m~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 143 MDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5677899999999999999999999999999999999998
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.75 E-value=93 Score=23.10 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy15016 3 KEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQ 41 (131)
Q Consensus 3 ~el~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~ 41 (131)
.++.+|+.. |.-++-+--...+.+..|+.+|.+||.
T Consensus 75 ~el~~l~~r---y~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 75 QELEELQQR---YQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344444443 777777777778888888888888885
No 13
>PRK11415 hypothetical protein; Provisional
Probab=45.82 E-value=92 Score=21.02 Aligned_cols=43 Identities=14% Similarity=0.390 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--------HHHHHHHHHHHHH
Q psy15016 4 EMRNLTDAKKEYQKLLRSQSSYENQVKTLR--------SEVNEMRQTRVRL 46 (131)
Q Consensus 4 el~~Lq~~~~E~~rL~K~k~k~e~~ik~L~--------~EI~~mK~~KV~L 46 (131)
-|..|.......++|...-...+.+|..+. .+|..||+.|+.|
T Consensus 8 ~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~L 58 (74)
T PRK11415 8 LISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQL 58 (74)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 355666666666666666666666665544 6799999999876
No 14
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.49 E-value=1.4e+02 Score=23.16 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhh
Q psy15016 94 VILKRKQEEWCSGY 107 (131)
Q Consensus 94 ~VLkRKtEEa~a~~ 107 (131)
..+.+|..||.++|
T Consensus 180 Rwm~~k~~eAe~mN 193 (194)
T PF08614_consen 180 RWMQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhc
Confidence 34444444444443
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.68 E-value=2.5e+02 Score=22.49 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=23.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHH
Q psy15016 16 QKLLRSQSSYENQVKTLRSEVNEMRQTRVR---LIRKMKEETNKHKE 59 (131)
Q Consensus 16 ~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~---L~kqMkeEsekfr~ 59 (131)
.++.+.-...+..+..|+.+|.++..++-. +|.+|-...+.|-.
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555555533 55566666655544
No 16
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=29.57 E-value=3.1e+02 Score=22.23 Aligned_cols=60 Identities=8% Similarity=0.209 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhH
Q psy15016 6 RNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRN 65 (131)
Q Consensus 6 ~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~ 65 (131)
.+|.+.....+-|.+.-++...-|..+...-..+|..-...+..+..+..+|..++..-+
T Consensus 83 ~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 83 ADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777788888888888888888888888899999999999998887544
No 17
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.11 E-value=2.2e+02 Score=21.97 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy15016 7 NLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQ 41 (131)
Q Consensus 7 ~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~ 41 (131)
+|..+.-|.+-|+....-.+.+|..|..||.+|..
T Consensus 69 qL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 69 QLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45566677777777777777889999999988764
No 18
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.07 E-value=4.6e+02 Score=24.08 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy15016 11 AKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLE 86 (131)
Q Consensus 11 ~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe 86 (131)
...+...+....+.....+..+..++.......-.|-..+..+.-.+-.....-+.++..++.+-......+..+-
T Consensus 214 le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 214 LEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444555555556666666666665555566666666666666566667777777776666666655444
No 19
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=28.93 E-value=1.4e+02 Score=18.26 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLI 47 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~ 47 (131)
.+|..|-......+.....=..+|..||+.|+.|=
T Consensus 6 ~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LK 40 (49)
T PF04325_consen 6 EEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLK 40 (49)
T ss_dssp HHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 44666666555555554444568888898888763
No 20
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=28.88 E-value=2.7e+02 Score=21.35 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHhHHHHH
Q psy15016 6 RNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTR-------VRLIRKMKEETNKHKEQEILRNREIA 69 (131)
Q Consensus 6 ~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~K-------V~L~kqMkeEsekfr~~k~~r~KEi~ 69 (131)
..|.++.....++...-.....++..+..||..+...= -.+-..|+.|.++|...+..--+.+.
T Consensus 142 ~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l 212 (236)
T PF09325_consen 142 KELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSML 212 (236)
T ss_pred HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665554445677888888888877422 14667788999999888877666654
No 21
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.88 E-value=1.8e+02 Score=24.07 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=28.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 16 QKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMK 51 (131)
Q Consensus 16 ~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMk 51 (131)
..|..+..+...++..|+.||..++.-=|+|--++|
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888889999998888888887775
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.79 E-value=3.9e+02 Score=22.58 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhH
Q psy15016 3 KEMRNLTDAKKEYQKLLRSQS---SYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQ 79 (131)
Q Consensus 3 ~el~~Lq~~~~E~~rL~K~k~---k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~ 79 (131)
.++..+......+...++... .....+..+..|+..++.....|...+.+ .......-++|+..|..+...-.
T Consensus 16 ~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~----LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 16 KQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEE----LEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp --------------------------HH--HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555554443 23445566666666666666555544433 22233333444555555444444
Q ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHhhccc
Q psy15016 80 NLIRNLESDKKTKEVILKRKQEEWCSGYCFV 110 (131)
Q Consensus 80 ~ei~kLe~~~~kQe~VLkRKtEEa~a~~krl 110 (131)
.+....-.....-...+-.-.+|...+..++
T Consensus 92 ~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 92 EEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555555554443
No 23
>KOG2129|consensus
Probab=26.58 E-value=5.2e+02 Score=23.99 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHh
Q psy15016 28 QVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLES 87 (131)
Q Consensus 28 ~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~ 87 (131)
-|..|++||..++.+=..-.+.-.++.-+|+..+-.-.-|..+| +|+-.+++-+=++
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rl---QrkL~~e~erRea 310 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERL---QRKLINELERREA 310 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHH
Confidence 45677788888777766666666666667776666655555554 3444444444333
No 24
>KOG1144|consensus
Probab=26.22 E-value=6.1e+02 Score=25.46 Aligned_cols=23 Identities=4% Similarity=0.072 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Q psy15016 4 EMRNLTDAKKEYQKLLRSQSSYE 26 (131)
Q Consensus 4 el~~Lq~~~~E~~rL~K~k~k~e 26 (131)
-|.+.+....++.+......+-+
T Consensus 222 ~La~~qe~eE~qkreeEE~~r~e 244 (1064)
T KOG1144|consen 222 ALAKRQEEEERQKREEEERLRRE 244 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333433333333333
No 25
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.53 E-value=1.5e+02 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 25 YENQVKTLRSEVNEMRQTRVRLIRKMK 51 (131)
Q Consensus 25 ~e~~ik~L~~EI~~mK~~KV~L~kqMk 51 (131)
.+.++..|+.|++.|.+..-.+..+++
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIk 107 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIE 107 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 356666667777666666655555554
No 26
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.07 E-value=5.2e+02 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy15016 8 LTDAKKEYQKLLRSQSSYENQVKTLRSEVNEM 39 (131)
Q Consensus 8 Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~m 39 (131)
|..-+.+.+.+.+.......+..+|..+|.++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~ 71 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 27
>KOG4403|consensus
Probab=24.76 E-value=5.5e+02 Score=23.91 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHhHHHHHHHHHHh
Q psy15016 2 QKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKH------KEQEILRNREIAKLKKES 75 (131)
Q Consensus 2 ~~el~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekf------r~~k~~r~KEi~qLKke~ 75 (131)
-+.|..|+.+..+..-|++..++....- ...-.-|+.|=++|+| +-+. -.....+ +||.+|+-+=
T Consensus 248 ~kdle~Lq~aEqsl~dlQk~Lekar~e~-------rnvavek~~lerkl~e-a~rl~elreg~e~e~~r-kelE~lR~~L 318 (575)
T KOG4403|consen 248 MKDLEGLQRAEQSLEDLQKRLEKAREEQ-------RNVAVEKLDLERKLDE-APRLSELREGVENETSR-KELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hchhhhhhhHHHHHhh-hhhhhhhhcchhHHHHH-HHHHHHHHHH
Confidence 3456667777666666666555444332 2233345666666661 1111 1122233 5888888777
Q ss_pred HHhHHHH
Q psy15016 76 RRAQNLI 82 (131)
Q Consensus 76 RK~~~ei 82 (131)
++.+.++
T Consensus 319 ~kAEkel 325 (575)
T KOG4403|consen 319 EKAEKEL 325 (575)
T ss_pred HHHHHHH
Confidence 7776554
No 28
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.30 E-value=2e+02 Score=24.97 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhHhHHHHHHHHHHHHHHhhc
Q psy15016 66 REIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEEWCSGYC 108 (131)
Q Consensus 66 KEi~qLKke~RK~~~ei~kLe~~~~kQe~VLkRKtEEa~a~~k 108 (131)
-.+-.|+|+...++++|..|++.-.+|..-.--..-|.+++.+
T Consensus 25 ~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkR 67 (307)
T PF10481_consen 25 QQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKR 67 (307)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3467788999999999999999888886544333344455544
No 29
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.66 E-value=4.1e+02 Score=21.74 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhhHhHHHHHHHHHHHHHHh
Q psy15016 78 AQNLIRNLESDKKTKEVILKRKQEEWCSG 106 (131)
Q Consensus 78 ~~~ei~kLe~~~~kQe~VLkRKtEEa~a~ 106 (131)
-++.|..++....+-.....|.++|...+
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 30
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.77 E-value=2.8e+02 Score=19.45 Aligned_cols=68 Identities=25% Similarity=0.320 Sum_probs=39.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHhh
Q psy15016 17 KLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESD 88 (131)
Q Consensus 17 rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~~ 88 (131)
.|......-...+..+..=|.+-..-++.-++.+.++.. .......||..|..+--.-...+.+++..
T Consensus 36 ~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k----~~~~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 36 ELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKK----KKEEKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666666666666666654 34445566666666655555555555543
No 31
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=22.41 E-value=2.3e+02 Score=18.34 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy15016 45 RLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLE 86 (131)
Q Consensus 45 ~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe 86 (131)
.|..+|+.|-+........-..+|..|..+.+.-..++..++
T Consensus 8 ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 8 ELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888887777788888899999988888777776654
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.16 E-value=4.2e+02 Score=21.27 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHHh
Q psy15016 64 RNREIAKLKKESRRAQNLIRNLES 87 (131)
Q Consensus 64 r~KEi~qLKke~RK~~~ei~kLe~ 87 (131)
.+..+..|+.+...-..++..+++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555444444433
No 33
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.69 E-value=3.3e+02 Score=19.94 Aligned_cols=17 Identities=18% Similarity=-0.037 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhccc
Q psy15016 94 VILKRKQEEWCSGYCFV 110 (131)
Q Consensus 94 ~VLkRKtEEa~a~~krl 110 (131)
.=++||.=|+..+..||
T Consensus 133 ~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 133 HELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555666665554
No 34
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.55 E-value=4.6e+02 Score=21.48 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=31.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHh
Q psy15016 20 RSQSSYENQVKTLRSEVNEMRQTRVR---LIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLES 87 (131)
Q Consensus 20 K~k~k~e~~ik~L~~EI~~mK~~KV~---L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~ 87 (131)
..-+..+.-|..+..|+..|-.-|.. -+++|.++-.. =+..|.+++.+..+....|.++..
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~-------lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINT-------LENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666555433 33444444332 234455666666666666655544
No 35
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.07 E-value=4.1e+02 Score=20.80 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHhhh
Q psy15016 10 DAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESDK 89 (131)
Q Consensus 10 ~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~~~ 89 (131)
..+..+..|.+..+.....+..|..+|...+.. ++++ ......-.++..|+++-..-..++..+..-.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~--------r~~~----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG--------REES----EEREELLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344456666666666666666666666665432 2222 3333444556666666666666666554444
Q ss_pred Hh
Q psy15016 90 KT 91 (131)
Q Consensus 90 ~k 91 (131)
-.
T Consensus 134 p~ 135 (188)
T PF03962_consen 134 PE 135 (188)
T ss_pred HH
Confidence 33
No 36
>KOG3990|consensus
Probab=20.43 E-value=5.5e+02 Score=22.16 Aligned_cols=68 Identities=19% Similarity=0.421 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHhhhHhHHHHHHHHHHHHHHhh
Q psy15016 28 QVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEEWCSGY 107 (131)
Q Consensus 28 ~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~~~~kQe~VLkRKtEEa~a~~ 107 (131)
.|..|..||..||. |+ ....+.-..+++.|.-|+-. .+|. ..|+..|.-.-..|.+|.+|+...-
T Consensus 226 ~i~~lkeeia~Lkk----~L-------~qkdq~ileKdkqisnLKad---~e~~-~~~ek~Hke~v~qL~~k~~~~lk~~ 290 (305)
T KOG3990|consen 226 KIQKLKEEIARLKK----LL-------HQKDQLILEKDKQISNLKAD---KEYQ-KELEKKHKERVQQLQKKKEESLKAI 290 (305)
T ss_pred HHHHHHHHHHHHHH----HH-------hhhHHHHHhhhhhhhccCcc---hhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777763 11 11223334567778888765 3444 5677778887888999999887544
Q ss_pred ccc
Q psy15016 108 CFV 110 (131)
Q Consensus 108 krl 110 (131)
-.|
T Consensus 291 a~l 293 (305)
T KOG3990|consen 291 AQL 293 (305)
T ss_pred HHH
Confidence 444
No 37
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.32 E-value=2.4e+02 Score=17.85 Aligned_cols=34 Identities=12% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy15016 7 NLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMR 40 (131)
Q Consensus 7 ~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK 40 (131)
.+.....+.+.+.+...........|..+|..++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555666666666666666666666553
Done!