Query psy15016
Match_columns 131
No_of_seqs 109 out of 119
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:16:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 88.1 18 0.00061 34.2 15.4 90 3-92 960-1049(1080)
2 3oja_B Anopheles plasmodium-re 79.9 26 0.00088 29.4 14.7 109 13-121 463-585 (597)
3 2dfs_A Myosin-5A; myosin-V, in 56.2 1.4E+02 0.0046 28.3 12.6 15 26-40 959-973 (1080)
4 3hnw_A Uncharacterized protein 45.3 83 0.0029 22.7 9.9 63 15-88 70-132 (138)
5 1yf2_A Type I restriction-modi 38.7 82 0.0028 24.2 6.4 38 13-50 379-416 (425)
6 2v71_A Nuclear distribution pr 37.6 1.4E+02 0.0047 22.9 13.3 88 3-90 31-119 (189)
7 3oja_A Leucine-rich immune mol 33.6 1.9E+02 0.0066 23.5 12.6 80 17-96 364-458 (487)
8 3nmd_A CGMP dependent protein 31.4 89 0.003 20.6 4.7 19 18-36 45-63 (72)
9 2no2_A HIP-I, huntingtin-inter 29.4 1.4E+02 0.0048 20.6 11.7 41 14-54 2-42 (107)
10 2jee_A YIIU; FTSZ, septum, coi 28.1 1.4E+02 0.0047 20.1 10.4 60 22-85 15-74 (81)
11 1ydx_A Type I restriction enzy 27.6 1.6E+02 0.0053 23.0 6.4 38 13-50 355-392 (406)
12 3tnu_A Keratin, type I cytoske 25.9 1.7E+02 0.0058 20.4 12.2 62 23-84 41-102 (131)
13 1yf2_A Type I restriction-modi 25.9 1.8E+02 0.0062 22.2 6.4 40 13-52 169-208 (425)
14 2v66_B Nuclear distribution pr 24.9 1.8E+02 0.0063 20.4 9.7 57 27-90 10-66 (111)
15 1i84_S Smooth muscle myosin he 23.5 91 0.0031 29.3 4.9 110 1-110 901-1013(1184)
16 1uix_A RHO-associated kinase; 22.4 1.7E+02 0.0059 19.2 7.9 37 18-54 16-52 (71)
17 2v71_A Nuclear distribution pr 22.1 2.1E+02 0.0073 21.8 6.0 27 26-52 87-113 (189)
18 3tnu_B Keratin, type II cytosk 21.4 2.1E+02 0.0072 19.8 13.3 61 24-84 40-100 (129)
19 1oxz_A ADP-ribosylation factor 21.0 2.7E+02 0.0093 21.0 7.3 47 7-54 49-95 (186)
20 1naf_A ADP-ribosylation factor 20.8 2.6E+02 0.0088 20.6 7.1 49 7-56 33-81 (158)
21 1ci6_A Transcription factor AT 20.5 1.6E+02 0.0056 18.2 6.5 27 14-40 31-57 (63)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.05 E-value=18 Score=34.16 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHH
Q psy15016 3 KEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLI 82 (131)
Q Consensus 3 ~el~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei 82 (131)
.|+.+|+....+...+.......+..+..|..||..+...=-++.+..+.=-+.+......-+..|..|.++..+-+.++
T Consensus 960 ~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566666667777777777777776665555555544444444444555577778888888888888
Q ss_pred HHHHhhhHhH
Q psy15016 83 RNLESDKKTK 92 (131)
Q Consensus 83 ~kLe~~~~kQ 92 (131)
..|+..-..+
T Consensus 1040 ~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1040 EELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777544444
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.90 E-value=26 Score=29.37 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHh
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQT--------------RVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRA 78 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~--------------KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~ 78 (131)
.+...+.......+..+..+..+|.+.... =-+.+.++++........-.....++..+.++-..-
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDL 542 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhH
Confidence 344555555555666666666666554322 112333344333333333344444454555555555
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHhhcccchhhhhhcCCC
Q psy15016 79 QNLIRNLESDKKTKEVILKRKQEEWCSGYCFVPTSVLEVGGSS 121 (131)
Q Consensus 79 ~~ei~kLe~~~~kQe~VLkRKtEEa~a~~krl~~s~~~~~~~~ 121 (131)
+.++..|+..-..+...+.+-.+|++.++.-+..-...+.++.
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5777788887778888888888888888776644444444433
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=56.22 E-value=1.4e+02 Score=28.26 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy15016 26 ENQVKTLRSEVNEMR 40 (131)
Q Consensus 26 e~~ik~L~~EI~~mK 40 (131)
+..+..|+.++.+|+
T Consensus 959 ~~e~~~L~~~l~~le 973 (1080)
T 2dfs_A 959 STETEKLRSDVERLR 973 (1080)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.30 E-value=83 Score=22.65 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=35.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHhh
Q psy15016 15 YQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESD 88 (131)
Q Consensus 15 ~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~~ 88 (131)
+-.+.......+..+..+..||.++|..=+.+. ..-..-.+++..|+++-..-+.++.+|++.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~-----------~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQ-----------IKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666777777765433332 222334456666666666666666666643
No 5
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=38.72 E-value=82 Score=24.24 Aligned_cols=38 Identities=8% Similarity=0.306 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKM 50 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqM 50 (131)
.||.++...-..-+..+..++.+|..++..|-.||.+|
T Consensus 379 ~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 379 EEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777888999999999999999999999886
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=37.63 E-value=1.4e+02 Score=22.93 Aligned_cols=88 Identities=13% Similarity=0.251 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHH
Q psy15016 3 KEMRNLTDAKKEYQ-KLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNL 81 (131)
Q Consensus 3 ~el~~Lq~~~~E~~-rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~e 81 (131)
.||.+.+.--++.. -|.+.....+.+++.|...+..++.---.+=-+...-..-+-..-..-.+||..|+...+.-...
T Consensus 31 ~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 31 DELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433332 23444444555555555544444433333323444444444445566677888888888888888
Q ss_pred HHHHHhhhH
Q psy15016 82 IRNLESDKK 90 (131)
Q Consensus 82 i~kLe~~~~ 90 (131)
|+.|+-.+-
T Consensus 111 ireLEq~ND 119 (189)
T 2v71_A 111 VRELEQAND 119 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888876654
No 7
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.62 E-value=1.9e+02 Score=23.50 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=39.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHH
Q psy15016 17 KLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRK---------------MKEETNKHKEQEILRNREIAKLKKESRRAQNL 81 (131)
Q Consensus 17 rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kq---------------MkeEsekfr~~k~~r~KEi~qLKke~RK~~~e 81 (131)
.+...+...++.+...+.+..++.........+ |..-..++.......+.|....+..--.-..+
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhH
Confidence 444445555666666665555555444333222 22333444444444555555555555555555
Q ss_pred HHHHHhhhHhHHHHH
Q psy15016 82 IRNLESDKKTKEVIL 96 (131)
Q Consensus 82 i~kLe~~~~kQe~VL 96 (131)
+.+|...+.+.+-++
T Consensus 444 ~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 444 ETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh
Confidence 555555555544444
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.36 E-value=89 Score=20.64 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=7.2
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q psy15016 18 LLRSQSSYENQVKTLRSEV 36 (131)
Q Consensus 18 L~K~k~k~e~~ik~L~~EI 36 (131)
+.+.....+..|..|++++
T Consensus 45 LEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 9
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.36 E-value=1.4e+02 Score=20.59 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15016 14 EYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEET 54 (131)
Q Consensus 14 E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEs 54 (131)
+|+.|++.......++...+..-.+.-..|..|-.+|-+=.
T Consensus 2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999988888888888777777777777877776633
No 10
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.06 E-value=1.4e+02 Score=20.07 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHH
Q psy15016 22 QSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNL 85 (131)
Q Consensus 22 k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kL 85 (131)
.+.--..|.-|+.||.++|...+.|-... +-.+........|+.+|+.+.---+..|..|
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~----~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEV----QNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678899999999999888776543 3344445556677777777765555555444
No 11
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=27.59 E-value=1.6e+02 Score=23.04 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKM 50 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqM 50 (131)
.||.++...-...+..+..++.+|..++..|--||.+|
T Consensus 355 ~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 355 QLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666677888899999999999999999998876
No 12
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.91 E-value=1.7e+02 Score=20.37 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHH
Q psy15016 23 SSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRN 84 (131)
Q Consensus 23 ~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~k 84 (131)
......|..|..||..++.++..|-..+.+--.+|...-..-.--|..|..+=..-..+|..
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999998876666655444444444444444333333333
No 13
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=25.86 E-value=1.8e+02 Score=22.24 Aligned_cols=40 Identities=10% Similarity=0.341 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKE 52 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMke 52 (131)
.||.++......-+..|..++..|..++..|-.||..|=.
T Consensus 169 ~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 169 EEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777889999999999999999999999987754
No 14
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.91 E-value=1.8e+02 Score=20.43 Aligned_cols=57 Identities=14% Similarity=0.311 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHHHHhhhH
Q psy15016 27 NQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESDKK 90 (131)
Q Consensus 27 ~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~kLe~~~~ 90 (131)
..+..|..|+...|. +...-..-+-..-..=.+||.+|+...+.-..-|+.||..|.
T Consensus 10 ~~~~~L~~E~e~~k~-------K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 10 ADNQRLKYEVEALKE-------KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 345566666666663 222222222233344566777777777777777777776553
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.51 E-value=91 Score=29.29 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHhHHHHHHHHHHhHH
Q psy15016 1 MQKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMK---EETNKHKEQEILRNREIAKLKKESRR 77 (131)
Q Consensus 1 m~~el~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMk---eEsekfr~~k~~r~KEi~qLKke~RK 77 (131)
++.+...+.....+...+.......+..+..|..++.++......|...+. .+.......-..-+.++..|..+-..
T Consensus 901 L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~ 980 (1184)
T 1i84_S 901 LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980 (1184)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhhHhHHHHHHHHHHHHHHhhccc
Q psy15016 78 AQNLIRNLESDKKTKEVILKRKQEEWCSGYCFV 110 (131)
Q Consensus 78 ~~~ei~kLe~~~~kQe~VLkRKtEEa~a~~krl 110 (131)
.+.++..++..-...+.-+..-.++...+..++
T Consensus 981 le~~l~~l~~el~~lee~l~~l~~e~~~le~~i 1013 (1184)
T 1i84_S 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013 (1184)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 16
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.39 E-value=1.7e+02 Score=19.18 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=20.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15016 18 LLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEET 54 (131)
Q Consensus 18 L~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEs 54 (131)
|.......++.+..++.|-.+|...|+.|=+++..|.
T Consensus 16 l~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~ 52 (71)
T 1uix_A 16 LNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555666666666666666666553
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.15 E-value=2.1e+02 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 26 ENQVKTLRSEVNEMRQTRVRLIRKMKE 52 (131)
Q Consensus 26 e~~ik~L~~EI~~mK~~KV~L~kqMke 52 (131)
...+..|+.||..+...+..|..++++
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888887777764
No 18
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.35 E-value=2.1e+02 Score=19.78 Aligned_cols=61 Identities=11% Similarity=0.248 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHhHHhHHHHHH
Q psy15016 24 SYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRN 84 (131)
Q Consensus 24 k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsekfr~~k~~r~KEi~qLKke~RK~~~ei~k 84 (131)
.....|..|..||..++.++..|-..+.+--.+|...-..-.--|..|..+=..-..+|..
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456788999999999999999999998877777655444444455554444443334433
No 19
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.02 E-value=2.7e+02 Score=20.99 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15016 7 NLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEET 54 (131)
Q Consensus 7 ~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEs 54 (131)
+|+.+.+=..-|...-+..-+++.++.+||..++. +|.|+..|=...
T Consensus 49 DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~-nv~LL~EML~~~ 95 (186)
T 1oxz_A 49 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNN-NVKLLTEMVMSH 95 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 45555444444555555556778899999999885 899999997754
No 20
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.81 E-value=2.6e+02 Score=20.61 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15016 7 NLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNK 56 (131)
Q Consensus 7 ~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEsek 56 (131)
+|+.+.+=..-|...-+..-+++.++.+||..++. +|.|+..|=.....
T Consensus 33 DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~-nv~LL~EML~~~~p 81 (158)
T 1naf_A 33 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNN-NVKLLTEMVMSHSQ 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Confidence 45555544445555555556778899999999975 89999999776543
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.53 E-value=1.6e+02 Score=18.19 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy15016 14 EYQKLLRSQSSYENQVKTLRSEVNEMR 40 (131)
Q Consensus 14 E~~rL~K~k~k~e~~ik~L~~EI~~mK 40 (131)
+...|......-..+|..|..||..||
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666666666666666665
Done!