Query psy15016
Match_columns 131
No_of_seqs 109 out of 119
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 18:16:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15016.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15016hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ydxa1 d.287.1.2 (A:1-193) Bi 64.2 10 0.00076 24.6 6.4 40 13-52 144-183 (193)
2 d1ydxa2 d.287.1.2 (A:194-374) 59.2 14 0.00099 23.9 6.2 38 13-50 139-176 (181)
3 d1yf2a2 d.287.1.2 (A:221-425) 53.7 19 0.0014 22.9 6.2 38 13-50 159-196 (205)
4 d1yf2a1 d.287.1.2 (A:1-220) Bi 27.1 77 0.0056 20.6 6.4 39 13-51 169-207 (220)
5 d1h7ca_ a.7.5.1 (A:) Tubulin c 9.5 2.2E+02 0.016 17.8 6.1 37 5-41 3-39 (103)
6 d1v4aa1 a.24.16.4 (A:287-437) 5.9 44 0.0032 21.5 -0.6 11 119-129 33-43 (151)
7 d1x4ta1 a.2.15.1 (A:7-86) Pre- 5.7 3.3E+02 0.024 16.6 4.6 20 25-44 44-63 (80)
8 d2f23a1 a.2.1.1 (A:3-77) GreA 5.3 3.2E+02 0.023 16.0 4.2 26 27-52 8-33 (75)
9 d1o3xa_ a.7.8.1 (A:) ADP-ribos 5.0 3.8E+02 0.028 16.5 5.2 36 18-54 9-44 (112)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 4.8 3E+02 0.022 15.1 3.1 19 15-33 6-24 (66)
No 1
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=64.24 E-value=10 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKE 52 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMke 52 (131)
.||.++...-..-+..|..++.+|..++..+-.|+.+|=.
T Consensus 144 ~eQ~~I~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 144 NEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888888889999999999999999999999999854
No 2
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=59.25 E-value=14 Score=23.87 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKM 50 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqM 50 (131)
.||.++...-...+..|..+...|..+...|--|+.+|
T Consensus 139 ~eQ~~I~~~l~~~d~~i~~~~~~i~~l~~lk~~Ll~~l 176 (181)
T d1ydxa2 139 QLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 176 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888899999999999999999999999886
No 3
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=53.71 E-value=19 Score=22.89 Aligned_cols=38 Identities=8% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKM 50 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqM 50 (131)
.||.++...-...+..+..++..|..++..|-.||.+|
T Consensus 159 ~eQ~~I~~~l~~id~~i~~~~~~~~~l~~~k~~Ll~~l 196 (205)
T d1yf2a2 159 EEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 196 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777888999999999999999998988875
No 4
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=27.11 E-value=77 Score=20.58 Aligned_cols=39 Identities=10% Similarity=0.351 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 13 KEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMK 51 (131)
Q Consensus 13 ~E~~rL~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMk 51 (131)
.||.++.+.-..-+..+..++..|..++..|--|+.+|=
T Consensus 169 ~eQ~~I~~~l~~i~~~i~~~~~~i~~L~~~r~~ll~~l~ 207 (220)
T d1yf2a1 169 EEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLL 207 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777778888999999999999999988888773
No 5
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.51 E-value=2.2e+02 Score=17.85 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy15016 5 MRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQ 41 (131)
Q Consensus 5 l~~Lq~~~~E~~rL~K~k~k~e~~ik~L~~EI~~mK~ 41 (131)
|+.|.-+-.=..||+|....|+..+.....-|..||.
T Consensus 3 lrqLkIktgvvkRL~KE~~~Y~kE~~~q~~k~ek~k~ 39 (103)
T d1h7ca_ 3 VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRA 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555667777777777777777666666653
No 6
>d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=44 Score=21.52 Aligned_cols=11 Identities=36% Similarity=0.761 Sum_probs=9.2
Q ss_pred CCCCCcccccc
Q psy15016 119 GSSPSQDIKFI 129 (131)
Q Consensus 119 ~~~~~~~~~~~ 129 (131)
+.|+..|||||
T Consensus 33 ~~GGL~DIEfi 43 (151)
T d1v4aa1 33 GAGGIREIEFI 43 (151)
T ss_dssp STTSHHHHHHH
T ss_pred CCCceehHHHH
Confidence 67888899986
No 7
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.73 E-value=3.3e+02 Score=16.57 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15016 25 YENQVKTLRSEVNEMRQTRV 44 (131)
Q Consensus 25 ~e~~ik~L~~EI~~mK~~KV 44 (131)
.|.+|..|+.||+.|=+-|-
T Consensus 44 ~e~~IRdLNDeINkL~reK~ 63 (80)
T d1x4ta1 44 GEFRIRDLNDEINKLLREKG 63 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 57888999999988755443
No 8
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.32 E-value=3.2e+02 Score=16.01 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15016 27 NQVKTLRSEVNEMRQTRVRLIRKMKE 52 (131)
Q Consensus 27 ~~ik~L~~EI~~mK~~KV~L~kqMke 52 (131)
.-...|..|+..++..+..+...|.+
T Consensus 8 eg~~kL~~EL~~l~~~r~ei~~~I~e 33 (75)
T d2f23a1 8 AGYERLMQQLERERERLQEATKILQE 33 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44678999999988888888888876
No 9
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.96 E-value=3.8e+02 Score=16.48 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=26.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15016 18 LLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEET 54 (131)
Q Consensus 18 L~K~k~k~e~~ik~L~~EI~~mK~~KV~L~kqMkeEs 54 (131)
|.+..+..-+++.++.+||...+ .+|.|+..|=...
T Consensus 9 m~~e~e~~~e~~~k~~~eLe~v~-~n~~lL~eML~~~ 44 (112)
T d1o3xa_ 9 MVQEDQKRMEKISKRVNAIEEVN-NNVKLLTEMVMSH 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 33444555667888888998885 6899999997553
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=4.81 E-value=3e+02 Score=15.11 Aligned_cols=19 Identities=0% Similarity=-0.085 Sum_probs=7.7
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q psy15016 15 YQKLLRSQSSYENQVKTLR 33 (131)
Q Consensus 15 ~~rL~K~k~k~e~~ik~L~ 33 (131)
..||.+.....+..+..+.
T Consensus 6 ~~RL~K~l~kl~~~i~~~~ 24 (66)
T d1ivsa1 6 RRRQEKRLKELLALAERSQ 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
Done!