RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15016
(131 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 42.4 bits (100), Expect = 1e-05
Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 2 QKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKE-ETNKHKEQ 60
++E++ L + ++ + EN++ L+ +++E + L+ KM E E
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962
Query: 61 EILRNRE--IAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
E LR+ + ++E++ A N + +L+ + L + Q E
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Score = 30.1 bits (68), Expect = 0.21
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 1 MQKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQ 60
E L + + + N+V +L+ E+ ++R+ + + + K
Sbjct: 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE-------LHQTQTEKKTI 1010
Query: 61 EILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
E K K E+ + + ++ + KT++ L R+ +
Sbjct: 1011 E----EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Score = 30.1 bits (68), Expect = 0.22
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 3 KEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEI 62
K + + DA Q LLR LR + + Q VR K
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 63 LRN--------REIAKLKKESRRAQNLIRN---LESDKKTKEVILKRKQEEW 103
L+ RE+ KLK E+R + + LE+ + + + +E+
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 40.6 bits (95), Expect = 5e-05
Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 1 MQKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQ 60
+ + + + ++ Q+L + + Q+ L ++ E R +L + K K+
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
Query: 61 E---ILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
E ++ + KL KE + + + +L ++ +E K +
Sbjct: 989 EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Score = 38.3 bits (89), Expect = 3e-04
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 1 MQKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQ 60
+ KE + L ++ L + + E + K L N+ L ++K+E +E
Sbjct: 1002 LTKERKLL---EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 61 EILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
E + KL+ ES I L++ + L +K+EE
Sbjct: 1059 E----KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Score = 36.7 bits (85), Expect = 0.001
Identities = 21/112 (18%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 1 MQKEMRNLT----DAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKE---- 52
MQ++M +L + + QKL + + + ++K + ++ M +L ++ K
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 53 --ETNKHKEQEILRNREIAKLK-KESRRAQNLIRNLESDKKTKEVILKRKQE 101
+ + +E + + + KLK K L L+ ++K+++ + K K++
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/109 (12%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 1 MQKEMRNLTDAKKEYQKLLRSQSSY----ENQVKTLRSEVNEMRQTRVRLIRKMKEETNK 56
++++ L + K Q+ L++++ E L ++ E+ + + +++EE +
Sbjct: 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942
Query: 57 HKEQEILRNR---EIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
++ + + + ++ L+++ + + L+ +K T + +K+ +++
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Score = 30.6 bits (69), Expect = 0.14
Identities = 18/103 (17%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 1 MQKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQ 60
+Q+ A+ E ++L + + + L+ ++ + K +E
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 61 EILRNREIAKLKKESRRAQNLIRNLESDKKTKEVI-LKRKQEE 102
E + + A++++E R+Q L E K ++++ L+ + EE
Sbjct: 926 EEILHEMEARIEEEEERSQQLQA--EKKKMQQQMLDLEEQLEE 966
Score = 28.3 bits (63), Expect = 0.92
Identities = 12/103 (11%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Query: 3 KEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRL---IRKMKEETNKHKE 59
+ + ++ Q +RS + + R ++ EE + KE
Sbjct: 812 AKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKE 871
Query: 60 QEILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
++ E+ +L+++ + L+ + + + +E
Sbjct: 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 32.3 bits (74), Expect = 0.030
Identities = 5/109 (4%), Positives = 27/109 (24%), Gaps = 8/109 (7%)
Query: 2 QKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQE 61
+++ E + + + ++ E + + + + +
Sbjct: 901 WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG 960
Query: 62 I--LRNREIAKLKKESRRAQNLIRNLESDKKTKEVI------LKRKQEE 102
+ L R+ ++ ++ ++ + L
Sbjct: 961 VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.035
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 37/122 (30%)
Query: 12 KKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKL 71
K E ++ Y Q L ++ K + R + KL
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRL--------YNDNQVFAKY----------NVSRLQPYLKL 140
Query: 72 KK---ESRRAQNLIRNLESDK---KT---KEVILKRKQEE-------WCS-GYCFVPTSV 114
++ E R A+N++ ++ KT +V L K + W + C P +V
Sbjct: 141 RQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 115 LE 116
LE
Sbjct: 199 LE 200
Score = 29.8 bits (66), Expect = 0.29
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 26/105 (24%)
Query: 35 EVNEMRQTRVRLI----RKMKEETN-KHKE---QEILRNREIAKLKKESRRAQNLIRNLE 86
E E + ++ + + K + + IL EI + +R
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 87 SDKKTKEVILKRKQEEWCSGYCFVPTSVLEVGGSSPSQDIKFIWA 131
L KQEE FV + KF+ +
Sbjct: 70 --------TLLSKQEE--MVQKFV--------EEVLRINYKFLMS 96
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.15
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 27 NQVKTLRSEVNEMRQTR----VRL------IRKMKEETNKHKEQEI-----LRNREIAKL 71
Q L E +R+ R RL + M++E + ++++ ++ ++ K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 72 KKESRRAQN-LIRNLESD 88
K +R A + ++D
Sbjct: 135 KINNRIADKAFYQQPDAD 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.21
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 59 EQEILRNREI----AKLKKESR----RAQNLIRN 84
E L +I AKL +E+ + + LI+N
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich
repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens}
PDB: 1xwd_B* 1fl7_B*
Length = 111
Score = 28.3 bits (63), Expect = 0.43
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 103 WCSGYCFVPTSVLEVGGSSPSQDI 126
WC+GYC+ V + Q
Sbjct: 27 WCAGYCYTRDLVYKDPARPKIQKT 50
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.71
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 30/56 (53%)
Query: 72 KKESRRAQNLIRNLESDKKTKEVILKRKQEEWCSGYCFVPTSVLEVGGSSPSQDIK 127
+K++ ++ L++ LK + S+P+ IK
Sbjct: 18 EKQA------LKKLQAS-------LKL----------YAD-------DSAPALAIK 43
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 0.76
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 48 RKMKEETNKHKEQEILRNREIAKLKKESRRAQNLI---RNLESDKKTKEVILKRKQEE 102
K++ + ++H ++ +EI K K A++LI L ++KK +
Sbjct: 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 28.4 bits (64), Expect = 0.77
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 58 KEQEI-------LRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
KEQ+I L EI K+ +++ N E+D+K E++ R Q +
Sbjct: 495 KEQKITIKASSGLNEDEIQKMVRDAEA------NAEADRKFDELVQTRNQGD 540
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 27.6 bits (62), Expect = 0.98
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 58 KEQEI-------LRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEE 102
+EQ+I L +I + K + + E D++ KE + E
Sbjct: 126 REQQIVIQSSGGLSKDDIENMVKNAEK------YAEEDRRKKERVEAVNMAE 171
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo
sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Length = 145
Score = 26.9 bits (59), Expect = 1.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 103 WCSGYCFVPTSVLEVGGSSPSQDI 126
C+GYC T VL+ + Q +
Sbjct: 33 ICAGYCPTMTRVLQGVLPALPQVV 56
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 27.4 bits (60), Expect = 1.8
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 4/106 (3%)
Query: 8 LTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRNRE 67
EY L R +Y + + + +R L+ +K +
Sbjct: 121 FQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVY----SDDKLERNCYFTLEG 176
Query: 68 IAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEEWCSGYCFVPTS 113
+ ++ +E ++ E+ E I++ Q +
Sbjct: 177 VHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSD 222
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 26.9 bits (60), Expect = 1.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 17 KLLRSQSSYENQVKTLRSEVNEMRQTR 43
K+L+ Q + R+EV +R+TR
Sbjct: 64 KILKVVDPTPEQFQAFRNEVAVLRKTR 90
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 26.7 bits (58), Expect = 2.2
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 1 MQKEMRNLTDAKKEYQKLLR-SQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKE 59
+ L D+ YQK + S + +N V+ +R + + + ++
Sbjct: 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINED------- 117
Query: 60 QEILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKR 98
LR+R I L+++ I L+ + + + V +KR
Sbjct: 118 ---LRSR-IEILRRKVIEQVQRINLLQKNVRDQLVDMKR 152
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 26.2 bits (57), Expect = 3.3
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 6 RNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRL--IRKMKEETNKHKEQEIL 63
L ++YQ R + E+ R K+ EE + +E+
Sbjct: 18 AQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSK 77
Query: 64 RNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQE 101
E + + + Q ++ N E K I + + +
Sbjct: 78 EYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTK 115
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 26.2 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 17 KLLRSQSSYENQVKTLRSEVNEMRQTR 43
+L+ + E+Q+K + EV RQTR
Sbjct: 61 RLIDIERDNEDQLKAFKREVMAYRQTR 87
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB:
3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A*
3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A*
3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 25.7 bits (57), Expect = 4.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 17 KLLRSQSSYENQVKTLRSEVNEMRQTR 43
K+L + Q++ ++EV +R+TR
Sbjct: 52 KMLNVTAPTPQQLQAFKNEVGVLRKTR 78
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.0 bits (57), Expect = 5.3
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 22 QSSYENQV--KTLRSEVNEMRQTRVRLIRKMKEETNKHKEQE--ILRNREIAK---LKKE 74
+ S E ++ TL E EM++ R LI+ E K K E +L ++ L+ +
Sbjct: 2125 KESIETRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLEND 2184
Query: 75 SRRAQNLIRNLESDKKTKEVILKRKQEE 102
L+ L + KK I ++K E
Sbjct: 2185 E-----LMVTLNNLKKEAMNI-EKKLSE 2206
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 26.0 bits (57), Expect = 5.3
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 22 QSSYENQV--KTLRSEVNEMRQTRVRLIRKMKEETN--KHKEQEILRNREIAK---LKKE 74
SS ++Q + L++E + + R L++ E + E+ +L A L +
Sbjct: 2305 PSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDD 2364
Query: 75 SRRAQNLIRNLESDKKTKEVILKRKQEE 102
++I LE+ KK I K EE
Sbjct: 2365 -----SVISTLETLKKETTEI-ALKVEE 2386
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 25.6 bits (56), Expect = 5.3
Identities = 7/53 (13%), Positives = 20/53 (37%)
Query: 56 KHKEQEILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILKRKQEEWCSGYC 108
K + E L + + +++ + ++ N D + L+ + E +
Sbjct: 12 KQETNETLNHHNCSNMQRAFNLKEEMLTNKSIDCRPSNETLEYIKGEQHDRWD 64
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 25.0 bits (54), Expect = 8.4
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 1 MQKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEE 53
M MR+L +Y + R ++ + + ++ +++ + I K E
Sbjct: 1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSE 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 25.2 bits (54), Expect = 9.8
Identities = 8/90 (8%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 1 MQKEMRNLTDAKKEYQKLLRSQSSYENQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQ 60
+ + + + + + +K + ++ + +++E K+ +
Sbjct: 832 VNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRK 891
Query: 61 EILRNREIAKLKKESRRAQNLIRNLESDKK 90
L ++ +LK++ +Q +I+ + ++
Sbjct: 892 HDLH-EDMKQLKRKISESQAVIQLDDLRRR 920
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.126 0.340
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,760,005
Number of extensions: 88504
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 128
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)