RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15016
         (131 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 29.7 bits (66), Expect = 0.096
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 46 LIRKMKEETNKHKEQEILRNREIAKLKKESRRAQNLIRNLESDKKTKEVILK 97
           I  ++   +K  E + + N+E+A ++ + +  + L          K+ + K
Sbjct: 8  FISDIRNCKSKEAEIKRI-NKELANIRSKFKGDKAL-----DGYSKKKYVCK 53


>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 27.7 bits (60), Expect = 0.48
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 41  QTRVRLIRKMKEETNKHKEQEILR--NREIAKLKKESRRAQNLIRNLESDKKTKEVILKR 98
           + + + I+K+ E+ ++ ++ EIL     ++ K ++   +   + R   +DK+  E+I   
Sbjct: 23  REKNKAIKKIAEKLDERRK-EILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKAC 81

Query: 99  KQEEWCSGYCF 109
           +          
Sbjct: 82  ETVIGLKDPVG 92


>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
           tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 184

 Score = 27.1 bits (60), Expect = 0.51
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 37  NEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKL 71
            +    RV  IR+  E ++   ++E L+ R +AKL
Sbjct: 148 TDAIAGRVAQIRQEIENSDSDYDREKLQER-LAKL 181


>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId:
           562]}
          Length = 193

 Score = 26.3 bits (58), Expect = 1.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 37  NEMRQTRVRLIRKMKEETNKHKEQEILRNREIAKL 71
               Q RV  IR+  EE     ++E L+ R +AKL
Sbjct: 156 EAAIQGRVAQIRQQIEEATSDYDREKLQER-VAKL 189


>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 25.6 bits (56), Expect = 1.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 103 WCSGYCFVPTSVLEVGGSSPSQDI 126
            C+GYC   T VL+    +  Q +
Sbjct: 32  ICAGYCPTMTRVLQGVLPALPQVV 55


>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
           [TaxId: 1423]}
          Length = 229

 Score = 26.2 bits (57), Expect = 1.3
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 8/42 (19%)

Query: 88  DKKTKEVILKRKQEEWCSGYCFVPTSVLEVGGSSPSQDIKFI 129
           +K   +  L+   E   SG     T  + +GGS    +   +
Sbjct: 17  NKDLPDEQLEILCE---SG-----TDAVIIGGSDGVTEDNVL 50


>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase,
           C-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 270

 Score = 25.3 bits (55), Expect = 2.3
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 27  NQVKTLRSEVNEMRQTRVRLIRKMKEETNKHKEQEILRN--REIAKLKK 73
             V   R EV         LI +   ET      EIL +  RE+ K  +
Sbjct: 206 ESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWAREVTKFWQ 254


>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone,
           follitropin, beta chain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 105

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 103 WCSGYCFVPTSVLEVGGSSPSQDI 126
           WC+GYC+    V +       Q  
Sbjct: 25  WCAGYCYTRDLVYKDPARPKIQKT 48


>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
           5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
          Length = 458

 Score = 24.8 bits (54), Expect = 3.6
 Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 1   MQKEMRNLTDAKKEYQKLLRSQSSYENQ-----VKTLRSEVNEMRQTRVRLIRKMKEETN 55
           + + M    + +++Y  L        +Q     +  L+ +++ +     RL+++     N
Sbjct: 343 IGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYN 402

Query: 56  KH 57
             
Sbjct: 403 PK 404


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.340 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,392
Number of extensions: 18031
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 41
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.8 bits)