BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15017
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
++RP +E++ + C V PG +VTLG D+ F F V Q +Y+ C L+
Sbjct: 18 RVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLE 77
Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94
EG+NAT+ AYGQTGSGKTYTMG + + +
Sbjct: 78 AFFEGFNATVFAYGQTGSGKTYTMGEASVASL 109
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
++RP +E++ + C V PG +VTLG D+ F F V Q +Y+ C L+
Sbjct: 18 RVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLE 77
Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94
EG+NAT+ AYGQTGSGKTYTMG + + +
Sbjct: 78 AFFEGFNATVFAYGQTGSGKTYTMGEASVASL 109
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
MC+ RP + E++ R F+ GE V +G K + FD V Q +Y CA
Sbjct: 11 MCRFRPLNEAEIL---RGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACAK 67
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
+V LEGYN TI AYGQT SGKT+TM P
Sbjct: 68 QIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDP 102
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
MC+ RP + EV R ++ GE V + A K + FD VF + Q +Y CA
Sbjct: 12 MCRFRPLNESEV---NRGDKYIAKFQGEDTVVI-ASKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
+V LEGYN TI AYGQT SGKT+TM
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
MC+ RP + EV R ++ GE V + A K + FD VF + Q +Y CA
Sbjct: 12 MCRFRPLNESEV---NRGDKYIAKFQGEDTVVI-ASKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
+V LEGYN TI AYGQT SGKT+TM
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
C+IRP E MC CT+ E V L + + F+FD VF Q+
Sbjct: 62 CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 119
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+E+ + L+ +L+GYN I AYGQTGSGKTYTM
Sbjct: 120 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 153
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
C+IRP E MC CT+ E V L + + F+FD VF Q+
Sbjct: 59 CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 116
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+E+ + L+ +L+GYN I AYGQTGSGKTYTM
Sbjct: 117 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 150
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
C+IRP E MC CT+ E V L + + F+FD VF Q+
Sbjct: 73 CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 130
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+E+ + L+ +L+GYN I AYGQTGSGKTYTM
Sbjct: 131 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 164
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
C+IRP E MC CT+ E V L + + F+FD VF Q+
Sbjct: 65 CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 122
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+E+ + L+ +L+GYN I AYGQTGSGKTYTM
Sbjct: 123 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 156
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
MC+ RP + EV R +V GE V + A K + FD VF + Q +Y CA
Sbjct: 12 MCRFRPLNESEV---NRGDKYVAKFQGEDTVMI-ASKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
+V LEGYN TI AYGQT SGK +TM
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKNHTM 95
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 65.1 bits (157), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
C+IRP E MC CT+ E V L + + F+FD VF Q+
Sbjct: 62 CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 119
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+E+ + L+ +L+GYN I AYGQ+GSGKTYTM
Sbjct: 120 IFEM-VSPLIQSALDGYNICIFAYGQSGSGKTYTM 153
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 1 MCKIRPQSAREVIDMCR-VCTFVTPGEPQV-TLGADKSFTFDYVFDMADVQTTIYELCAA 58
+ + RPQ+ E+ + + TF P V + A SFTFD VFDM+ Q+ I++
Sbjct: 11 VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIK 70
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYT-MGTGTFSPISR 96
V L GYN T+ AYGQTG+GK+YT MGT P R
Sbjct: 71 PTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGR 109
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 1 MCKIRPQSAREV---------IDMCRVCTFVTPGEPQVTLGADK----SFTFDYVFDMAD 47
+ + RP +ARE +D V P E + + K +FTFD V+D
Sbjct: 9 IVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS 68
Query: 48 VQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
I++ L+ LEG+N+TI AYGQTG+GKT+TMG P
Sbjct: 69 CNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP 114
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 62.8 bits (151), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22 VTPGEPQVTLGA-DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS 80
VT P+ G K+FTFD V+D + Q +Y+ L+ L+G+N T+ AYGQTG+
Sbjct: 54 VTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGT 113
Query: 81 GKTYTM 86
GKTYTM
Sbjct: 114 GKTYTM 119
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
Length = 349
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
KSF FD VF + +YE AA ++ +++GYN TI AYGQT SGKTYTM
Sbjct: 44 KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 3 KIRPQSARE-VIDMCRVCTFVTPGEPQVTLGAD----KSFTFDYVFDMADVQTTIYELCA 57
++RP ++RE I V V P E D K FTFD F Q +Y +
Sbjct: 30 RVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVV 89
Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+ L+ L GYN T+ AYGQTG+GKT+TM
Sbjct: 90 SPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
K+FTFD V+D Q +Y+ LV L+G+N TI AYGQTG+GKTYTM
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 59.3 bits (142), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y A ++ + GYNATI AYGQTG+GKT+TM G SP
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTM-EGERSP 121
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 2 CKIRPQSARE--VIDMCRVCTFVTP-GEPQVTLGADKS----FTFDYVFDMADVQTTIYE 54
C+IRP E I+ +V F G+ +T+ S F FD +FD + I++
Sbjct: 34 CRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQETNDEIFK 93
Query: 55 LCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
L+ SL+GYN I AYGQTGSGKTYTM
Sbjct: 94 E-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTM 124
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 2 CKIRPQSAREVIDMCRVCTFV---TPGEPQVTLGADK------SFTFDYVFDMADVQTTI 52
C++RP E DM + G +T+ ++ +F FD +F+ + I
Sbjct: 11 CRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEI 70
Query: 53 YELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+E LV SL+GYN I AYGQTGSGKTYTM
Sbjct: 71 FEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MCKIRP-QSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAAS 59
+C+ RP + E V F E A K + FD VF Q +Y A S
Sbjct: 16 VCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKS 75
Query: 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86
+V L GYN TI AYGQT SGKT+TM
Sbjct: 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
D F FD VFD Q+ ++E ++ L GYN T+LAYG TG+GKT+TM
Sbjct: 71 DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
F FD +FD D +++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 110 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTM 158
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3 KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
++RP ++RE +I M T V P +P+ T KSF+FDY + D+
Sbjct: 11 RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 67
Query: 49 --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Q +Y ++ + EGYN I AYGQTG+GK+YTM
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3 KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
++RP ++RE +I M T V P +P+ T KSF+FDY + D+
Sbjct: 11 RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 67
Query: 49 --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Q +Y ++ + EGYN I AYGQTG+GK+YTM
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
F FD +FD D +++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
F FD +FD D +++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
F FD +FD D +++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 65 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 113
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
F FD +FD D +++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
F FD +FD D +++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 53 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 101
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3 KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
++RP ++RE +I M T V P +P+ T KSF+FDY + D+
Sbjct: 27 RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 83
Query: 49 --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Q +Y ++ + EGYN I AYGQTG+GK+YTM
Sbjct: 84 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 123
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGT 90
D SF D V A Q +YE A +V+ +L+GYN TI+ YGQTG+GKTYTM T
Sbjct: 71 DWSFKLDGVLHDAS-QDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGAT 126
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3 KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
++RP ++RE +I M T V P +P+ T KSF+FDY + D+
Sbjct: 11 RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 67
Query: 49 --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Q +Y ++ + EGYN I AYGQTG+GK+YTM
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
+++F FD+ FD +Y A LV EG AT AYGQTGSGKT+TMG
Sbjct: 120 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 55.8 bits (133), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
+++F FD+ FD +Y A LV EG AT AYGQTGSGKT+TMG
Sbjct: 100 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
+++F FD+ FD +Y A LV EG AT AYGQTGSGKT+TMG
Sbjct: 48 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 101
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 55 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 112
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 55.5 bits (132), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 55.5 bits (132), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 55.5 bits (132), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 63 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 120
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 55.5 bits (132), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 66 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 123
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFS 92
+++F FDY FD + +Y A LV E AT AYGQTGSGKT+TMG G FS
Sbjct: 138 NQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMG-GDFS 195
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
K++TFD VF + Q +Y ++ + GYN TI AYGQTG+GKT+TM G SP
Sbjct: 49 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 106
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 2 CKIRP-----QSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELC 56
C+IRP S RE + V F E K +D VFDM Q I+E
Sbjct: 19 CRIRPLNEKESSEREKQMLTTVDEFTV--EHPWKDDKRKQHIYDRVFDMRASQDDIFE-D 75
Query: 57 AASLVAGSLEGYNATILAYGQTGSGKTYTM 86
LV +++GYN I AYGQTGSGKT+T+
Sbjct: 76 TKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 105
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
F FD+ F Q +Y+ LV LEG+ T LAYGQTG+GK+Y+MG
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
F FD+ F Q +Y+ LV LEG+ T LAYGQTG+GK+Y+MG
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGAD---KSFTFDYVFDMADVQTTIYELCAA 58
C++RP +E+I R L D K +D VFD Q ++E
Sbjct: 11 CRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DTK 69
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
LV +++GYN I AYGQTGSGKT+T+ +P
Sbjct: 70 YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP 104
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTG 89
F+FD VF Q ++E A LV +L+GY I AYGQTGSGKT+TM G
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGG 136
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 3 KIRPQSARE-------VIDMCRVCTFVTPGEPQVT----LGADKSFTFDYVFDMADV--- 48
+IRP + RE V+D+ + P ++ G K F +D+ F D
Sbjct: 8 RIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVK 67
Query: 49 -----QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Q +++ +++ + +GYNA I AYGQTGSGK+YTM
Sbjct: 68 EKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 32 GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
G SF D VF Q +++ A LV ++G+N I AYGQTG+GKTYTM
Sbjct: 45 GKPVSFELDKVFSPQASQQDVFQEVQA-LVTSCIDGFNVCIFAYGQTGAGKTYTM 98
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 34 DKSFTFDYVF-------DMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+KSFTFD F + Q +Y+ + + EGY+ I AYGQTGSGK+YTM
Sbjct: 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG--TGTFSPI 94
F FD +F+ ++E + L+ SL+G N + AYGQTGSGKT+TM T P+
Sbjct: 432 FLFDKIFEREQSNDLVFEELS-QLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 95 S 95
S
Sbjct: 491 S 491
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+ FD + Q IY ++ LEG NA++LAYG TG+GKT+TM
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 37 FTFDYVFDMADVQTTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM 86
F D VFD T+YE L+ E G + AYGQTGSGKTYTM
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 16 CRVCTFVTPGEPQVTLGADKSFTFDYV 42
C VC VTP ++ L ++SF F YV
Sbjct: 34 CHVCQKVTPVLEELRLNYEESFGFYYV 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,988,908
Number of Sequences: 62578
Number of extensions: 104205
Number of successful extensions: 370
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 61
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)