Query psy15017
Match_columns 97
No_of_seqs 103 out of 1053
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 18:18:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a14_A Kinesin, kinesin-like p 100.0 5.7E-32 2E-36 192.8 8.9 90 1-90 16-105 (344)
2 2vvg_A Kinesin-2; motor protei 100.0 6.7E-32 2.3E-36 192.8 8.4 94 1-94 9-115 (350)
3 3b6u_A Kinesin-like protein KI 100.0 4.2E-31 1.4E-35 189.8 9.5 93 1-93 26-126 (372)
4 1x88_A Kinesin-like protein KI 100.0 3.7E-31 1.3E-35 189.4 8.3 91 1-91 13-111 (359)
5 1bg2_A Kinesin; motor protein, 100.0 5.3E-31 1.8E-35 186.6 8.8 91 1-93 12-102 (325)
6 3lre_A Kinesin-like protein KI 100.0 5.6E-31 1.9E-35 188.3 8.6 94 1-94 15-131 (355)
7 2y65_A Kinesin, kinesin heavy 100.0 1.3E-30 4.5E-35 186.9 9.6 92 1-93 16-109 (365)
8 2owm_A Nckin3-434, related to 100.0 1E-30 3.5E-35 191.2 8.9 94 1-94 43-162 (443)
9 2zfi_A Kinesin-like protein KI 100.0 8.7E-31 3E-35 187.9 6.9 91 1-92 9-113 (366)
10 1t5c_A CENP-E protein, centrom 100.0 4.9E-31 1.7E-35 188.3 5.5 94 1-94 9-103 (349)
11 2wbe_C Bipolar kinesin KRP-130 100.0 3.7E-30 1.3E-34 185.0 8.9 91 1-91 28-123 (373)
12 1goj_A Kinesin, kinesin heavy 100.0 5E-30 1.7E-34 183.4 9.3 89 1-90 11-102 (355)
13 3bfn_A Kinesin-like protein KI 100.0 1.7E-30 5.8E-35 187.4 5.4 93 1-94 26-124 (388)
14 2heh_A KIF2C protein; kinesin, 100.0 3E-30 1E-34 186.1 6.4 89 1-90 56-156 (387)
15 1v8k_A Kinesin-like protein KI 100.0 4.6E-30 1.6E-34 186.2 6.5 89 1-90 76-176 (410)
16 3gbj_A KIF13B protein; kinesin 100.0 1.2E-29 4.1E-34 181.4 8.3 92 1-94 6-118 (354)
17 3dc4_A Kinesin-like protein NO 100.0 1.2E-29 4.1E-34 180.8 7.4 89 1-90 27-116 (344)
18 2h58_A Kinesin-like protein KI 100.0 1.2E-29 4.3E-34 179.9 6.9 93 1-94 9-106 (330)
19 1ry6_A Internal kinesin; kines 100.0 1.8E-29 6E-34 180.8 6.5 89 1-90 5-106 (360)
20 3cob_A Kinesin heavy chain-lik 100.0 3.8E-29 1.3E-33 179.5 7.9 92 1-94 10-105 (369)
21 3nwn_A Kinesin-like protein KI 100.0 5E-29 1.7E-33 178.4 7.3 86 1-92 29-128 (359)
22 2rep_A Kinesin-like protein KI 100.0 8.2E-29 2.8E-33 178.2 6.8 90 1-91 27-138 (376)
23 3u06_A Protein claret segregat 99.9 9.5E-29 3.2E-33 179.5 6.2 91 1-94 64-164 (412)
24 3t0q_A AGR253WP; kinesin, alph 99.9 2.9E-28 9.9E-33 174.0 6.2 89 1-90 10-107 (349)
25 1f9v_A Kinesin-like protein KA 99.9 8.2E-28 2.8E-32 171.5 5.2 87 1-90 8-106 (347)
26 2nr8_A Kinesin-like protein KI 99.9 4.8E-27 1.6E-31 168.1 7.5 86 1-92 28-127 (358)
27 4etp_A Kinesin-like protein KA 99.9 5.7E-27 1.9E-31 169.9 6.6 89 1-90 64-162 (403)
28 4h1g_A Maltose binding protein 99.9 6.2E-24 2.1E-28 162.4 5.6 88 1-89 379-483 (715)
29 2o0a_A S.cerevisiae chromosome 99.6 2.6E-16 8.9E-21 109.1 5.9 50 34-84 56-108 (298)
30 3ec2_A DNA replication protein 96.1 0.001 3.5E-08 42.0 0.3 51 35-86 5-55 (180)
31 2w58_A DNAI, primosome compone 95.0 0.0084 2.9E-07 38.2 1.4 50 36-86 21-71 (202)
32 2qgz_A Helicase loader, putati 94.8 0.0095 3.3E-07 41.2 1.4 49 37-86 121-169 (308)
33 1jbk_A CLPB protein; beta barr 94.0 0.037 1.3E-06 34.0 2.7 27 60-86 34-60 (195)
34 2p65_A Hypothetical protein PF 93.6 0.038 1.3E-06 34.0 2.3 27 60-86 34-60 (187)
35 3te6_A Regulatory protein SIR3 93.2 0.039 1.3E-06 38.7 2.0 24 63-86 39-62 (318)
36 2bjv_A PSP operon transcriptio 92.6 0.056 1.9E-06 35.9 2.1 45 36-86 2-46 (265)
37 3t15_A Ribulose bisphosphate c 92.1 0.086 2.9E-06 35.9 2.5 48 39-86 2-53 (293)
38 1p9r_A General secretion pathw 90.9 0.13 4.3E-06 37.3 2.4 27 60-86 158-184 (418)
39 3bos_A Putative DNA replicatio 90.3 0.18 6.2E-06 32.2 2.6 19 68-86 51-69 (242)
40 2chg_A Replication factor C sm 90.0 0.16 5.4E-06 31.8 2.1 21 66-86 35-55 (226)
41 2kjq_A DNAA-related protein; s 89.5 0.11 3.8E-06 32.0 1.0 16 71-86 38-53 (149)
42 1fnn_A CDC6P, cell division co 89.4 0.24 8.2E-06 34.1 2.8 39 47-86 20-61 (389)
43 1vec_A ATP-dependent RNA helic 89.2 0.32 1.1E-05 30.6 3.1 24 60-85 33-56 (206)
44 1qde_A EIF4A, translation init 89.2 0.26 9E-06 31.5 2.7 24 60-85 44-67 (224)
45 3jvv_A Twitching mobility prot 89.0 0.16 5.4E-06 36.0 1.7 27 60-86 114-140 (356)
46 3dkp_A Probable ATP-dependent 88.8 0.28 9.7E-06 31.9 2.7 24 60-85 59-82 (245)
47 2v1u_A Cell division control p 88.6 0.062 2.1E-06 37.0 -0.7 46 40-86 15-61 (387)
48 1ixz_A ATP-dependent metallopr 88.6 0.19 6.4E-06 33.1 1.7 15 72-86 52-66 (254)
49 2gxq_A Heat resistant RNA depe 88.6 0.31 1.1E-05 30.6 2.7 24 60-85 31-54 (207)
50 1d2n_A N-ethylmaleimide-sensit 88.5 0.41 1.4E-05 31.7 3.4 21 66-86 61-81 (272)
51 3h4m_A Proteasome-activating n 88.3 0.19 6.3E-06 33.5 1.6 53 34-86 11-68 (285)
52 3bor_A Human initiation factor 88.3 0.2 6.9E-06 32.6 1.7 24 60-85 60-83 (237)
53 3fmo_B ATP-dependent RNA helic 87.8 0.28 9.7E-06 33.4 2.3 26 60-85 122-147 (300)
54 3fmp_B ATP-dependent RNA helic 87.5 0.37 1.3E-05 34.5 2.8 26 60-85 122-147 (479)
55 3cf0_A Transitional endoplasmi 87.2 0.21 7.1E-06 34.0 1.3 18 69-86 49-66 (301)
56 2r62_A Cell division protease 87.0 0.2 6.9E-06 33.1 1.1 50 36-86 7-61 (268)
57 2pl3_A Probable ATP-dependent 86.9 0.44 1.5E-05 30.8 2.7 24 60-85 55-78 (236)
58 3ly5_A ATP-dependent RNA helic 86.9 0.23 7.8E-06 33.1 1.3 24 60-85 84-107 (262)
59 1wrb_A DJVLGB; RNA helicase, D 86.9 0.44 1.5E-05 31.2 2.7 24 60-85 53-76 (253)
60 1lkx_A Myosin IE heavy chain; 86.9 0.44 1.5E-05 36.8 3.0 34 51-85 76-110 (697)
61 2qby_B CDC6 homolog 3, cell di 86.9 0.26 9E-06 34.0 1.7 39 47-86 23-62 (384)
62 3llm_A ATP-dependent RNA helic 86.8 0.31 1.1E-05 31.8 1.9 24 60-85 69-92 (235)
63 3co5_A Putative two-component 86.5 0.54 1.8E-05 28.3 2.8 16 71-86 29-44 (143)
64 3eiq_A Eukaryotic initiation f 86.5 0.48 1.6E-05 32.8 2.9 25 59-85 69-93 (414)
65 3iuy_A Probable ATP-dependent 86.4 0.49 1.7E-05 30.4 2.7 24 60-85 50-73 (228)
66 1t6n_A Probable ATP-dependent 86.2 0.52 1.8E-05 30.0 2.7 24 60-85 44-67 (220)
67 2v26_A Myosin VI; calmodulin-b 86.2 0.5 1.7E-05 36.9 3.0 26 60-85 130-156 (784)
68 1sxj_C Activator 1 40 kDa subu 86.0 0.38 1.3E-05 33.0 2.1 24 63-86 40-63 (340)
69 1w9i_A Myosin II heavy chain; 85.9 0.52 1.8E-05 36.8 3.0 26 60-85 162-188 (770)
70 3n70_A Transport activator; si 85.5 0.71 2.4E-05 27.8 3.0 18 69-86 24-41 (145)
71 3ber_A Probable ATP-dependent 85.4 0.58 2E-05 30.8 2.7 24 60-85 73-96 (249)
72 3uk6_A RUVB-like 2; hexameric 85.4 0.71 2.4E-05 31.7 3.3 38 48-86 48-87 (368)
73 1w7j_A Myosin VA; motor protei 85.2 0.59 2E-05 36.6 3.0 25 61-85 147-172 (795)
74 4db1_A Myosin-7; S1DC, cardiac 85.1 0.61 2.1E-05 36.5 3.0 27 59-85 160-187 (783)
75 2oxc_A Probable ATP-dependent 85.0 0.63 2.2E-05 30.0 2.7 24 60-85 54-77 (230)
76 2eyu_A Twitching motility prot 84.9 0.36 1.2E-05 32.5 1.5 19 68-86 24-42 (261)
77 1kk8_A Myosin heavy chain, str 84.8 0.56 1.9E-05 36.9 2.8 26 60-85 159-185 (837)
78 1i84_S Smooth muscle myosin he 84.7 0.67 2.3E-05 37.6 3.2 26 60-85 159-185 (1184)
79 1g8x_A Myosin II heavy chain f 84.7 0.62 2.1E-05 37.4 3.0 26 60-85 162-188 (1010)
80 4anj_A Unconventional myosin-V 84.5 0.65 2.2E-05 37.5 3.0 26 60-85 134-160 (1052)
81 3syl_A Protein CBBX; photosynt 84.5 1.1 3.8E-05 29.9 3.9 19 68-86 66-84 (309)
82 3fht_A ATP-dependent RNA helic 84.4 0.54 1.9E-05 32.4 2.3 26 60-85 55-80 (412)
83 3i5x_A ATP-dependent RNA helic 84.4 0.78 2.7E-05 33.5 3.3 26 60-85 102-127 (563)
84 2ycu_A Non muscle myosin 2C, a 84.3 0.66 2.3E-05 37.1 3.0 26 60-85 136-162 (995)
85 3d8b_A Fidgetin-like protein 1 84.1 0.16 5.5E-06 35.5 -0.5 19 68-86 116-134 (357)
86 2j0s_A ATP-dependent RNA helic 84.1 0.68 2.3E-05 32.1 2.7 24 60-85 67-90 (410)
87 2qby_A CDC6 homolog 1, cell di 84.1 0.14 4.9E-06 35.0 -0.8 20 67-86 43-62 (386)
88 3b9p_A CG5977-PA, isoform A; A 84.0 0.22 7.4E-06 33.4 0.1 51 36-86 17-71 (297)
89 3fe2_A Probable ATP-dependent 84.0 0.62 2.1E-05 30.3 2.4 24 60-85 59-82 (242)
90 3h1t_A Type I site-specific re 84.0 0.62 2.1E-05 34.4 2.6 25 61-86 191-215 (590)
91 2dfs_A Myosin-5A; myosin-V, in 83.8 0.72 2.5E-05 37.2 3.0 25 61-85 147-172 (1080)
92 4etp_B Spindle POLE BODY-assoc 83.7 5.4 0.00018 28.1 7.0 47 31-78 88-137 (333)
93 2c9o_A RUVB-like 1; hexameric 83.5 0.83 2.8E-05 32.9 3.0 39 47-86 40-80 (456)
94 3pey_A ATP-dependent RNA helic 83.0 0.67 2.3E-05 31.7 2.3 26 60-85 35-60 (395)
95 1gvn_B Zeta; postsegregational 83.0 1.7 5.9E-05 29.4 4.3 29 57-85 16-49 (287)
96 1l8q_A Chromosomal replication 82.9 0.27 9.2E-06 33.5 0.3 48 36-86 7-54 (324)
97 1njg_A DNA polymerase III subu 82.9 0.61 2.1E-05 29.3 2.0 17 70-86 46-62 (250)
98 2oap_1 GSPE-2, type II secreti 82.7 0.73 2.5E-05 34.1 2.5 20 65-86 258-277 (511)
99 1q0u_A Bstdead; DEAD protein, 82.7 0.47 1.6E-05 30.3 1.3 23 61-85 35-57 (219)
100 3b6e_A Interferon-induced heli 82.6 0.47 1.6E-05 29.8 1.3 23 62-86 43-65 (216)
101 3oiy_A Reverse gyrase helicase 82.5 0.72 2.5E-05 32.2 2.4 23 60-84 29-51 (414)
102 1iqp_A RFCS; clamp loader, ext 82.0 0.7 2.4E-05 30.9 2.1 36 47-86 28-63 (327)
103 1u0j_A DNA replication protein 81.8 1.1 3.7E-05 30.7 2.9 27 60-86 92-121 (267)
104 1sxj_D Activator 1 41 kDa subu 81.6 0.46 1.6E-05 32.3 1.0 25 62-86 51-75 (353)
105 2db3_A ATP-dependent RNA helic 81.5 0.96 3.3E-05 32.2 2.7 24 60-85 86-109 (434)
106 1xwi_A SKD1 protein; VPS4B, AA 81.4 0.44 1.5E-05 32.8 0.9 49 38-86 10-62 (322)
107 4b3f_X DNA-binding protein smu 81.1 0.61 2.1E-05 35.1 1.6 25 61-86 198-222 (646)
108 2ewv_A Twitching motility prot 81.0 0.75 2.5E-05 32.5 2.0 26 61-86 128-153 (372)
109 1n0w_A DNA repair protein RAD5 80.9 0.7 2.4E-05 29.7 1.7 28 59-86 11-41 (243)
110 1iy2_A ATP-dependent metallopr 80.8 0.35 1.2E-05 32.3 0.2 15 72-86 76-90 (278)
111 2qz4_A Paraplegin; AAA+, SPG7, 80.8 0.51 1.7E-05 30.7 1.0 18 69-86 39-56 (262)
112 1s2m_A Putative ATP-dependent 80.8 0.83 2.8E-05 31.5 2.1 24 60-85 51-74 (400)
113 1c4o_A DNA nucleotide excision 80.8 1.1 3.6E-05 34.2 2.8 40 43-87 7-46 (664)
114 3upu_A ATP-dependent DNA helic 80.5 1.1 3.9E-05 32.2 2.9 36 46-86 27-62 (459)
115 2p5t_B PEZT; postsegregational 80.2 1.1 3.7E-05 29.6 2.5 36 50-85 12-48 (253)
116 2fz4_A DNA repair protein RAD2 80.1 0.95 3.2E-05 29.7 2.1 23 62-86 103-125 (237)
117 1g8p_A Magnesium-chelatase 38 80.1 1 3.4E-05 30.6 2.3 45 34-86 18-62 (350)
118 3sqw_A ATP-dependent RNA helic 79.9 1.4 4.8E-05 32.5 3.2 26 60-85 51-76 (579)
119 2z4s_A Chromosomal replication 79.9 0.4 1.4E-05 34.6 0.3 18 69-86 130-147 (440)
120 2i4i_A ATP-dependent RNA helic 79.9 1.2 4.1E-05 30.8 2.7 24 60-85 45-68 (417)
121 2z0m_A 337AA long hypothetical 79.8 1.3 4.3E-05 29.6 2.7 24 61-86 25-48 (337)
122 2v1x_A ATP-dependent DNA helic 79.8 1.5 5E-05 32.9 3.3 24 60-85 52-75 (591)
123 2jlq_A Serine protease subunit 79.5 0.67 2.3E-05 33.3 1.3 24 61-85 12-35 (451)
124 2chq_A Replication factor C sm 79.2 0.57 2E-05 31.3 0.9 21 66-86 35-55 (319)
125 2x8a_A Nuclear valosin-contain 79.2 0.17 5.9E-06 34.2 -1.8 15 72-86 47-61 (274)
126 1ofh_A ATP-dependent HSL prote 78.8 0.45 1.5E-05 31.7 0.2 17 70-86 51-67 (310)
127 1w5s_A Origin recognition comp 78.3 1.3 4.4E-05 30.7 2.5 25 62-86 40-69 (412)
128 3pxg_A Negative regulator of g 78.2 2 7E-05 31.1 3.6 27 60-86 192-218 (468)
129 2r44_A Uncharacterized protein 78.1 0.95 3.3E-05 30.8 1.7 16 71-86 48-63 (331)
130 2d7d_A Uvrabc system protein B 78.0 1.4 4.7E-05 33.5 2.7 47 36-87 4-50 (661)
131 1lv7_A FTSH; alpha/beta domain 77.8 0.72 2.5E-05 30.2 1.0 18 69-86 45-62 (257)
132 3c8u_A Fructokinase; YP_612366 77.7 1.7 5.9E-05 27.6 2.8 28 59-86 10-39 (208)
133 1hv8_A Putative ATP-dependent 77.3 1.5 5E-05 29.6 2.5 24 61-85 37-60 (367)
134 1xti_A Probable ATP-dependent 77.3 1.6 5.6E-05 29.8 2.7 24 60-85 38-61 (391)
135 4fcw_A Chaperone protein CLPB; 77.2 0.89 3E-05 30.4 1.3 17 70-86 48-64 (311)
136 1tue_A Replication protein E1; 77.1 0.75 2.6E-05 30.5 0.9 16 70-85 59-74 (212)
137 4gp7_A Metallophosphoesterase; 76.9 0.73 2.5E-05 28.6 0.8 16 71-86 11-26 (171)
138 3pfi_A Holliday junction ATP-d 76.8 1.9 6.3E-05 29.3 2.9 38 48-86 33-72 (338)
139 4a2p_A RIG-I, retinoic acid in 76.7 1.7 5.6E-05 31.3 2.7 24 60-85 15-38 (556)
140 2w0m_A SSO2452; RECA, SSPF, un 76.3 1 3.6E-05 28.4 1.4 28 59-86 10-40 (235)
141 4a74_A DNA repair and recombin 76.1 1.5 5.2E-05 27.7 2.2 28 59-86 12-42 (231)
142 3fho_A ATP-dependent RNA helic 75.8 1.4 4.7E-05 32.1 2.1 25 61-85 150-174 (508)
143 1sxj_B Activator 1 37 kDa subu 75.6 1.2 4E-05 29.8 1.6 23 64-86 37-59 (323)
144 3b85_A Phosphate starvation-in 75.4 1.3 4.4E-05 28.7 1.7 25 60-86 15-39 (208)
145 1in4_A RUVB, holliday junction 75.0 0.65 2.2E-05 32.0 0.2 16 71-86 53-68 (334)
146 3lfu_A DNA helicase II; SF1 he 74.7 0.79 2.7E-05 34.0 0.6 19 69-87 22-40 (647)
147 2ykg_A Probable ATP-dependent 74.7 1.9 6.6E-05 32.2 2.7 23 61-85 22-44 (696)
148 1rz3_A Hypothetical protein rb 74.4 4 0.00014 25.7 3.8 28 59-86 9-39 (201)
149 4ag6_A VIRB4 ATPase, type IV s 74.3 0.59 2E-05 32.8 -0.2 16 71-86 37-52 (392)
150 1sxj_E Activator 1 40 kDa subu 74.1 0.88 3E-05 31.1 0.7 15 72-86 39-53 (354)
151 3tbk_A RIG-I helicase domain; 73.8 2.2 7.4E-05 30.5 2.7 24 60-85 12-35 (555)
152 3pvs_A Replication-associated 73.8 1.6 5.3E-05 31.7 2.0 42 44-86 26-67 (447)
153 3hu3_A Transitional endoplasmi 73.7 1.6 5.5E-05 32.0 2.0 20 67-86 236-255 (489)
154 4gl2_A Interferon-induced heli 73.3 2 7E-05 32.1 2.5 25 60-86 15-39 (699)
155 1r6b_X CLPA protein; AAA+, N-t 73.2 2.8 9.6E-05 32.0 3.3 27 60-86 198-224 (758)
156 3eie_A Vacuolar protein sortin 73.1 1.1 3.9E-05 30.5 1.1 17 70-86 52-68 (322)
157 2cvh_A DNA repair and recombin 72.8 2.4 8.3E-05 26.6 2.5 28 59-86 7-37 (220)
158 3u61_B DNA polymerase accessor 72.6 2.1 7.3E-05 28.9 2.3 21 66-86 44-65 (324)
159 1fuu_A Yeast initiation factor 72.4 1.2 4.2E-05 30.4 1.1 24 60-85 51-74 (394)
160 1ojl_A Transcriptional regulat 72.2 1.7 5.9E-05 29.6 1.8 19 68-86 24-42 (304)
161 1w36_D RECD, exodeoxyribonucle 71.8 0.88 3E-05 34.2 0.2 17 70-86 165-181 (608)
162 3pxi_A Negative regulator of g 71.4 4 0.00014 31.2 3.8 27 60-86 192-218 (758)
163 3vfd_A Spastin; ATPase, microt 71.2 3 0.0001 29.2 2.9 17 70-86 149-165 (389)
164 1uaa_A REP helicase, protein ( 71.1 1 3.4E-05 34.0 0.4 19 69-87 15-33 (673)
165 1rif_A DAR protein, DNA helica 71.0 1.4 4.9E-05 29.3 1.1 21 64-86 125-145 (282)
166 1e9r_A Conjugal transfer prote 70.9 0.91 3.1E-05 32.2 0.2 18 69-86 53-70 (437)
167 1jr3_A DNA polymerase III subu 70.5 2.1 7.3E-05 29.2 1.9 17 70-86 39-55 (373)
168 2qag_C Septin-7; cell cycle, c 70.5 1.2 4E-05 32.2 0.7 23 64-86 26-48 (418)
169 2qnr_A Septin-2, protein NEDD5 70.4 1.1 3.8E-05 30.6 0.5 24 63-86 12-35 (301)
170 1rj9_A FTSY, signal recognitio 70.3 1.2 4.2E-05 30.6 0.7 17 70-86 103-119 (304)
171 3uie_A Adenylyl-sulfate kinase 70.0 2.8 9.7E-05 26.3 2.3 19 67-85 23-41 (200)
172 2pt7_A CAG-ALFA; ATPase, prote 70.0 2.4 8.2E-05 29.4 2.1 19 66-86 170-188 (330)
173 3e70_C DPA, signal recognition 69.9 4.3 0.00015 28.2 3.4 18 69-86 129-146 (328)
174 3tau_A Guanylate kinase, GMP k 69.7 1.4 4.7E-05 28.2 0.8 16 71-86 10-25 (208)
175 1moz_A ARL1, ADP-ribosylation 69.4 3.3 0.00011 25.0 2.5 27 60-86 8-35 (183)
176 2gk6_A Regulator of nonsense t 68.8 2 7E-05 32.2 1.7 16 71-86 197-212 (624)
177 1oyw_A RECQ helicase, ATP-depe 68.5 1.8 6.3E-05 31.7 1.3 24 60-85 33-56 (523)
178 1gm5_A RECG; helicase, replica 68.4 2.9 9.8E-05 32.6 2.4 37 45-85 369-405 (780)
179 2r8r_A Sensor protein; KDPD, P 68.4 1.2 3.9E-05 29.9 0.2 18 70-87 7-24 (228)
180 2dr3_A UPF0273 protein PH0284; 68.3 3 0.0001 26.6 2.2 26 61-86 12-40 (247)
181 4a4z_A Antiviral helicase SKI2 68.3 3.2 0.00011 33.1 2.8 22 61-84 48-69 (997)
182 2fwr_A DNA repair protein RAD2 68.0 3.1 0.0001 29.6 2.4 23 62-86 103-125 (472)
183 3iij_A Coilin-interacting nucl 68.0 1.6 5.4E-05 26.9 0.8 15 71-85 13-27 (180)
184 4b4t_M 26S protease regulatory 68.0 2.4 8.4E-05 30.8 1.9 47 39-85 180-231 (434)
185 3nbx_X ATPase RAVA; AAA+ ATPas 67.9 3 0.0001 30.8 2.4 22 63-86 37-58 (500)
186 1gku_B Reverse gyrase, TOP-RG; 67.6 3.2 0.00011 33.3 2.6 23 60-84 64-86 (1054)
187 3b9q_A Chloroplast SRP recepto 67.6 1.8 6.1E-05 29.7 1.1 17 70-86 101-117 (302)
188 2ehv_A Hypothetical protein PH 67.4 1.4 4.7E-05 28.3 0.4 16 71-86 32-47 (251)
189 3tr0_A Guanylate kinase, GMP k 67.3 1.4 4.8E-05 27.5 0.4 15 72-86 10-24 (205)
190 2zan_A Vacuolar protein sortin 66.7 1.2 4E-05 32.1 -0.0 17 70-86 168-184 (444)
191 1hqc_A RUVB; extended AAA-ATPa 66.5 3.6 0.00012 27.5 2.4 19 68-86 37-55 (324)
192 1zp6_A Hypothetical protein AT 66.4 2.5 8.6E-05 26.0 1.5 17 70-86 10-26 (191)
193 2gza_A Type IV secretion syste 66.0 3.4 0.00012 28.9 2.3 21 64-86 172-192 (361)
194 1um8_A ATP-dependent CLP prote 65.9 1.8 6E-05 30.1 0.8 18 69-86 72-89 (376)
195 1znw_A Guanylate kinase, GMP k 65.4 1.6 5.5E-05 27.7 0.5 15 72-86 23-37 (207)
196 1qvr_A CLPB protein; coiled co 65.2 2.4 8.3E-05 33.0 1.5 27 60-86 182-208 (854)
197 2px0_A Flagellar biosynthesis 64.7 1.6 5.6E-05 29.8 0.4 16 71-86 107-122 (296)
198 3t5d_A Septin-7; GTP-binding p 64.7 2.6 8.7E-05 28.1 1.4 23 64-86 3-25 (274)
199 1zj6_A ADP-ribosylation factor 64.0 7.7 0.00026 23.5 3.5 23 64-86 11-33 (187)
200 4a2q_A RIG-I, retinoic acid in 63.7 4.5 0.00015 31.1 2.7 24 60-85 256-279 (797)
201 2qp9_X Vacuolar protein sortin 63.6 2.1 7.1E-05 29.8 0.8 51 36-86 47-101 (355)
202 3trf_A Shikimate kinase, SK; a 63.5 2.7 9.3E-05 25.8 1.3 14 71-84 7-20 (185)
203 3kta_A Chromosome segregation 63.5 2.7 9.1E-05 25.8 1.2 15 71-85 28-42 (182)
204 1kgd_A CASK, peripheral plasma 63.4 1.8 6.3E-05 26.8 0.4 15 72-86 8-22 (180)
205 1f2t_A RAD50 ABC-ATPase; DNA d 63.2 3.3 0.00011 25.1 1.6 14 72-85 26-39 (149)
206 2eyq_A TRCF, transcription-rep 62.8 7.2 0.00025 31.6 3.8 25 61-85 616-640 (1151)
207 2oca_A DAR protein, ATP-depend 62.8 2.8 9.4E-05 30.1 1.3 15 72-86 131-145 (510)
208 2yvu_A Probable adenylyl-sulfa 62.8 3.4 0.00012 25.5 1.6 17 69-85 13-29 (186)
209 3e1s_A Exodeoxyribonuclease V, 62.4 3.2 0.00011 31.1 1.6 17 70-86 205-221 (574)
210 2og2_A Putative signal recogni 62.2 2.6 8.9E-05 29.8 1.1 17 70-86 158-174 (359)
211 3hws_A ATP-dependent CLP prote 62.0 2.3 7.9E-05 29.4 0.8 17 70-86 52-68 (363)
212 2xzl_A ATP-dependent helicase 61.9 3.2 0.00011 32.3 1.6 16 71-86 377-392 (802)
213 3vaa_A Shikimate kinase, SK; s 61.9 3 0.0001 26.2 1.2 15 71-85 27-41 (199)
214 2p6r_A Afuhel308 helicase; pro 61.8 2.9 0.0001 31.6 1.4 20 64-85 37-56 (702)
215 3u4q_A ATP-dependent helicase/ 61.8 1.6 5.6E-05 35.4 -0.0 19 69-87 23-41 (1232)
216 1v5w_A DMC1, meiotic recombina 61.4 6.5 0.00022 27.2 3.0 28 59-86 109-139 (343)
217 1sxj_A Activator 1 95 kDa subu 61.3 5.2 0.00018 29.2 2.6 17 70-86 78-94 (516)
218 1pjr_A PCRA; DNA repair, DNA r 61.1 1.7 5.9E-05 33.2 0.0 19 69-87 24-42 (724)
219 2rhm_A Putative kinase; P-loop 61.1 3.7 0.00013 25.2 1.6 16 70-85 6-21 (193)
220 1pzn_A RAD51, DNA repair and r 61.0 6.7 0.00023 27.3 3.0 28 59-86 118-148 (349)
221 2iut_A DNA translocase FTSK; n 60.6 2 6.7E-05 32.5 0.2 16 71-86 216-231 (574)
222 3l9o_A ATP-dependent RNA helic 60.5 4.8 0.00016 32.6 2.4 24 60-85 192-215 (1108)
223 1wp9_A ATP-dependent RNA helic 60.3 4.4 0.00015 28.0 2.0 24 60-86 17-40 (494)
224 4ddu_A Reverse gyrase; topoiso 60.2 5 0.00017 32.4 2.5 23 60-84 86-108 (1104)
225 3kl4_A SRP54, signal recogniti 60.2 9.5 0.00032 27.7 3.8 17 70-86 98-114 (433)
226 2yhs_A FTSY, cell division pro 60.1 5.4 0.00018 29.7 2.5 17 70-86 294-310 (503)
227 3lnc_A Guanylate kinase, GMP k 60.0 2.8 9.7E-05 26.9 0.9 15 72-86 30-44 (231)
228 1uf9_A TT1252 protein; P-loop, 59.9 4.4 0.00015 25.1 1.8 19 67-85 6-24 (203)
229 2qor_A Guanylate kinase; phosp 59.8 3.1 0.0001 26.3 1.0 14 72-85 15-28 (204)
230 2ga8_A Hypothetical 39.9 kDa p 59.4 11 0.00039 26.7 4.0 21 66-86 21-41 (359)
231 2j41_A Guanylate kinase; GMP, 59.4 3.5 0.00012 25.6 1.3 16 71-86 8-23 (207)
232 2wjy_A Regulator of nonsense t 59.1 3.9 0.00013 31.9 1.7 16 71-86 373-388 (800)
233 3dm5_A SRP54, signal recogniti 59.1 11 0.00038 27.5 3.9 18 69-86 100-117 (443)
234 2i1q_A DNA repair and recombin 59.1 7.5 0.00026 26.3 2.9 29 58-86 84-115 (322)
235 4a2w_A RIG-I, retinoic acid in 59.0 6 0.00021 31.2 2.7 25 60-86 256-280 (936)
236 3pxi_A Negative regulator of g 59.0 7.1 0.00024 29.8 3.1 16 71-86 523-538 (758)
237 1knq_A Gluconate kinase; ALFA/ 58.6 3.8 0.00013 24.9 1.3 16 70-85 9-24 (175)
238 1odf_A YGR205W, hypothetical 3 58.1 10 0.00034 25.8 3.4 20 67-86 29-48 (290)
239 2va8_A SSO2462, SKI2-type heli 57.9 4.9 0.00017 30.3 2.0 21 64-86 43-63 (715)
240 1z6g_A Guanylate kinase; struc 57.9 2.3 8E-05 27.4 0.2 13 74-86 28-40 (218)
241 2z83_A Helicase/nucleoside tri 57.9 4.3 0.00015 29.2 1.6 22 63-85 16-37 (459)
242 2xau_A PRE-mRNA-splicing facto 57.4 4.7 0.00016 31.2 1.8 23 61-84 102-124 (773)
243 1vma_A Cell division protein F 57.3 3.8 0.00013 28.2 1.2 17 70-86 105-121 (306)
244 2dhr_A FTSH; AAA+ protein, hex 57.3 2.5 8.5E-05 31.2 0.3 16 71-86 66-81 (499)
245 2fna_A Conserved hypothetical 57.0 2.7 9.2E-05 28.2 0.4 17 70-86 31-47 (357)
246 2b8t_A Thymidine kinase; deoxy 56.9 2.6 9.1E-05 27.7 0.3 20 69-88 12-31 (223)
247 2xgj_A ATP-dependent RNA helic 56.6 4.9 0.00017 32.2 1.8 21 63-85 97-117 (1010)
248 1htw_A HI0065; nucleotide-bind 56.3 3.4 0.00012 25.5 0.8 16 71-86 35-50 (158)
249 2qen_A Walker-type ATPase; unk 56.0 7.6 0.00026 25.9 2.5 17 70-86 32-48 (350)
250 1qvr_A CLPB protein; coiled co 55.7 12 0.00041 29.1 3.9 17 70-86 589-605 (854)
251 2vli_A Antibiotic resistance p 55.5 4.9 0.00017 24.4 1.4 15 71-85 7-21 (183)
252 1ksh_A ARF-like protein 2; sma 55.5 5.7 0.00019 24.0 1.7 25 62-86 10-35 (186)
253 3rc3_A ATP-dependent RNA helic 55.4 3.8 0.00013 31.4 1.0 19 64-84 152-170 (677)
254 2z43_A DNA repair and recombin 55.1 7.6 0.00026 26.5 2.5 28 59-86 94-124 (324)
255 2zj8_A DNA helicase, putative 54.9 3.5 0.00012 31.2 0.8 20 64-85 36-55 (720)
256 2ius_A DNA translocase FTSK; n 54.9 2.8 9.6E-05 31.2 0.2 15 72-86 170-184 (512)
257 2bbw_A Adenylate kinase 4, AK4 54.9 4.6 0.00016 26.2 1.3 17 70-86 28-44 (246)
258 1yks_A Genome polyprotein [con 54.6 4.8 0.00016 28.8 1.4 20 64-85 5-24 (440)
259 1f6b_A SAR1; gtpases, N-termin 54.4 9 0.00031 23.7 2.6 27 60-86 15-42 (198)
260 3tif_A Uncharacterized ABC tra 53.8 3.4 0.00011 27.1 0.5 14 73-86 35-48 (235)
261 3t61_A Gluconokinase; PSI-biol 53.7 4.4 0.00015 25.3 1.0 15 71-85 20-34 (202)
262 3crm_A TRNA delta(2)-isopenten 53.7 6.2 0.00021 27.5 1.8 15 70-84 6-20 (323)
263 1r6b_X CLPA protein; AAA+, N-t 53.6 12 0.0004 28.6 3.4 17 70-86 489-505 (758)
264 3aez_A Pantothenate kinase; tr 53.4 5.9 0.0002 27.2 1.7 18 69-86 90-107 (312)
265 4eun_A Thermoresistant glucoki 53.4 5.1 0.00017 25.1 1.2 15 71-85 31-45 (200)
266 1y63_A LMAJ004144AAA protein; 53.1 4.7 0.00016 25.0 1.0 15 71-85 12-26 (184)
267 2qag_A Septin-2, protein NEDD5 52.9 4.1 0.00014 28.5 0.8 24 63-86 31-54 (361)
268 3k1j_A LON protease, ATP-depen 52.5 8.9 0.0003 28.6 2.6 24 61-86 54-77 (604)
269 2ged_A SR-beta, signal recogni 52.2 4.9 0.00017 24.5 1.0 19 68-86 47-65 (193)
270 2bwj_A Adenylate kinase 5; pho 52.2 4.8 0.00016 24.8 1.0 15 71-85 14-28 (199)
271 3cf2_A TER ATPase, transitiona 52.1 9.1 0.00031 30.1 2.7 49 37-85 201-254 (806)
272 1w4r_A Thymidine kinase; type 52.0 6.6 0.00023 25.5 1.6 23 61-83 12-34 (195)
273 2r2a_A Uncharacterized protein 52.0 4.4 0.00015 26.1 0.8 15 72-86 8-22 (199)
274 2zr9_A Protein RECA, recombina 51.9 9.3 0.00032 26.6 2.5 28 59-86 47-78 (349)
275 1z2a_A RAS-related protein RAB 51.5 5.2 0.00018 23.5 1.0 17 70-86 6-22 (168)
276 1s96_A Guanylate kinase, GMP k 51.5 3.8 0.00013 26.6 0.4 16 71-86 18-33 (219)
277 1e69_A Chromosome segregation 51.3 4.8 0.00016 27.5 0.9 14 73-86 28-41 (322)
278 2b6h_A ADP-ribosylation factor 51.0 5 0.00017 24.8 0.9 26 61-86 21-46 (192)
279 1xx6_A Thymidine kinase; NESG, 50.6 2.8 9.6E-05 26.9 -0.3 17 71-87 10-26 (191)
280 3qks_A DNA double-strand break 50.5 7.1 0.00024 24.8 1.6 15 71-85 25-39 (203)
281 3a8t_A Adenylate isopentenyltr 50.5 5.8 0.0002 27.9 1.3 14 71-84 42-55 (339)
282 1sq5_A Pantothenate kinase; P- 50.4 13 0.00045 25.1 3.0 18 69-86 80-97 (308)
283 3auy_A DNA double-strand break 50.0 6.8 0.00023 27.3 1.6 13 72-84 28-40 (371)
284 4b4t_L 26S protease subunit RP 49.6 5.4 0.00018 29.0 1.0 37 49-85 190-231 (437)
285 3o8b_A HCV NS3 protease/helica 49.5 8.3 0.00028 29.6 2.0 16 71-86 234-249 (666)
286 4b4t_K 26S protease regulatory 49.5 5.3 0.00018 28.9 1.0 15 71-85 208-222 (428)
287 1ak2_A Adenylate kinase isoenz 49.2 5.1 0.00018 25.8 0.8 17 69-85 16-32 (233)
288 1ky3_A GTP-binding protein YPT 49.1 5.9 0.0002 23.6 1.0 18 69-86 8-25 (182)
289 1zu4_A FTSY; GTPase, signal re 48.9 5.8 0.0002 27.4 1.0 16 71-86 107-122 (320)
290 1zd8_A GTP:AMP phosphotransfer 48.9 5.7 0.0002 25.4 1.0 15 71-85 9-23 (227)
291 1j8m_F SRP54, signal recogniti 48.8 19 0.00064 24.5 3.6 16 71-86 100-115 (297)
292 1ukz_A Uridylate kinase; trans 48.8 6.7 0.00023 24.4 1.3 17 69-85 15-31 (203)
293 2v3c_C SRP54, signal recogniti 48.7 5.3 0.00018 28.8 0.8 16 71-86 101-116 (432)
294 3crv_A XPD/RAD3 related DNA he 48.5 14 0.00048 27.1 3.1 23 61-85 16-38 (551)
295 2zts_A Putative uncharacterize 48.4 6.7 0.00023 24.9 1.2 26 60-85 18-46 (251)
296 1fzq_A ADP-ribosylation factor 48.3 12 0.0004 22.7 2.3 26 61-86 6-33 (181)
297 3m6a_A ATP-dependent protease 48.2 4.7 0.00016 29.8 0.5 18 69-86 108-125 (543)
298 2pcj_A ABC transporter, lipopr 48.0 4.6 0.00016 26.3 0.4 13 74-86 35-47 (224)
299 3foz_A TRNA delta(2)-isopenten 47.9 6.7 0.00023 27.4 1.2 15 70-84 11-25 (316)
300 4g1u_C Hemin import ATP-bindin 47.7 7.6 0.00026 26.0 1.5 13 74-86 42-54 (266)
301 2c95_A Adenylate kinase 1; tra 47.6 7 0.00024 23.9 1.2 14 71-84 11-24 (196)
302 2obl_A ESCN; ATPase, hydrolase 47.5 7 0.00024 27.3 1.3 25 60-86 61-88 (347)
303 1z0j_A RAB-22, RAS-related pro 47.5 6.5 0.00022 23.1 1.0 16 71-86 8-23 (170)
304 4b4t_J 26S protease regulatory 47.4 6.3 0.00022 28.4 1.1 37 49-85 157-198 (405)
305 1qf9_A UMP/CMP kinase, protein 47.3 7.1 0.00024 23.7 1.2 15 71-85 8-22 (194)
306 2qmh_A HPR kinase/phosphorylas 47.3 10 0.00035 24.9 2.0 16 70-85 35-50 (205)
307 2yz2_A Putative ABC transporte 47.2 4.9 0.00017 26.8 0.5 14 73-86 37-50 (266)
308 1zak_A Adenylate kinase; ATP:A 47.1 6.3 0.00022 25.0 1.0 14 71-84 7-20 (222)
309 2ce7_A Cell division protein F 47.1 5.6 0.00019 29.2 0.8 16 71-86 51-66 (476)
310 3asz_A Uridine kinase; cytidin 47.1 7.2 0.00025 24.4 1.2 15 72-86 9-23 (211)
311 1nlf_A Regulatory protein REPA 47.0 7 0.00024 25.8 1.2 16 71-86 32-47 (279)
312 1ji0_A ABC transporter; ATP bi 46.7 5.1 0.00017 26.3 0.5 14 73-86 36-49 (240)
313 1z08_A RAS-related protein RAB 46.7 6.8 0.00023 23.1 1.0 17 70-86 7-23 (170)
314 2pez_A Bifunctional 3'-phospho 46.7 8.9 0.0003 23.3 1.6 15 71-85 7-21 (179)
315 2cdn_A Adenylate kinase; phosp 46.6 9 0.00031 23.8 1.6 19 66-84 17-35 (201)
316 2gno_A DNA polymerase III, gam 46.6 15 0.00051 25.0 2.8 28 59-86 8-35 (305)
317 1mv5_A LMRA, multidrug resista 46.4 6 0.0002 26.0 0.8 15 72-86 31-45 (243)
318 2onk_A Molybdate/tungstate ABC 46.4 5.1 0.00018 26.4 0.4 15 72-86 27-41 (240)
319 1a5t_A Delta prime, HOLB; zinc 46.4 11 0.00037 25.8 2.1 26 60-85 14-40 (334)
320 1g6h_A High-affinity branched- 46.1 5.3 0.00018 26.5 0.5 14 73-86 37-50 (257)
321 2yyz_A Sugar ABC transporter, 46.1 5.2 0.00018 28.2 0.5 13 74-86 34-46 (359)
322 1ypw_A Transitional endoplasmi 46.0 10 0.00034 29.5 2.1 51 36-86 200-255 (806)
323 2vhj_A Ntpase P4, P4; non- hyd 45.8 8.2 0.00028 27.2 1.4 17 70-86 124-140 (331)
324 1wms_A RAB-9, RAB9, RAS-relate 45.7 7.2 0.00025 23.2 1.0 17 70-86 8-24 (177)
325 1r2q_A RAS-related protein RAB 45.7 7.2 0.00025 22.8 1.0 16 71-86 8-23 (170)
326 3fvq_A Fe(3+) IONS import ATP- 45.6 5.2 0.00018 28.3 0.4 13 74-86 35-47 (359)
327 1np6_A Molybdopterin-guanine d 45.5 5.4 0.00019 25.0 0.4 15 72-86 9-23 (174)
328 1g29_1 MALK, maltose transport 45.5 5.4 0.00018 28.3 0.5 14 73-86 33-46 (372)
329 3gfo_A Cobalt import ATP-bindi 45.4 5.4 0.00019 26.9 0.4 13 74-86 39-51 (275)
330 2y8e_A RAB-protein 6, GH09086P 45.4 7.2 0.00024 23.1 1.0 16 71-86 16-31 (179)
331 1svi_A GTP-binding protein YSX 45.3 7 0.00024 23.8 0.9 17 70-86 24-40 (195)
332 1z47_A CYSA, putative ABC-tran 45.3 5.4 0.00019 28.1 0.5 13 74-86 46-58 (355)
333 3qf7_A RAD50; ABC-ATPase, ATPa 45.2 9.1 0.00031 26.7 1.6 13 73-85 27-39 (365)
334 1b0u_A Histidine permease; ABC 45.2 5.5 0.00019 26.6 0.4 13 74-86 37-49 (262)
335 1nrj_B SR-beta, signal recogni 45.2 7.3 0.00025 24.3 1.0 20 67-86 10-29 (218)
336 1m7g_A Adenylylsulfate kinase; 45.1 9.6 0.00033 24.0 1.6 17 69-85 25-41 (211)
337 1w36_B RECB, exodeoxyribonucle 45.1 4.1 0.00014 33.0 -0.3 15 73-87 20-34 (1180)
338 1sgw_A Putative ABC transporte 45.1 5 0.00017 26.1 0.2 13 74-86 40-52 (214)
339 2jeo_A Uridine-cytidine kinase 45.1 3.4 0.00012 26.9 -0.6 15 72-86 28-42 (245)
340 3pqc_A Probable GTP-binding pr 45.0 7.2 0.00025 23.6 0.9 16 71-86 25-40 (195)
341 1u0l_A Probable GTPase ENGC; p 45.0 7.8 0.00027 26.2 1.2 15 72-86 172-186 (301)
342 3rlf_A Maltose/maltodextrin im 45.0 5.5 0.00019 28.4 0.4 13 74-86 34-46 (381)
343 3tw8_B RAS-related protein RAB 44.8 7.5 0.00026 23.1 1.0 16 71-86 11-26 (181)
344 1pfs_A PF3 SSDBP, PF3 single-s 44.8 7.2 0.00025 21.5 0.8 15 73-87 11-25 (78)
345 3con_A GTPase NRAS; structural 44.6 7.6 0.00026 23.5 1.0 16 71-86 23-38 (190)
346 1upt_A ARL1, ADP-ribosylation 44.4 7.8 0.00027 22.8 1.0 17 70-86 8-24 (171)
347 1z0f_A RAB14, member RAS oncog 44.4 7.8 0.00027 23.0 1.0 17 70-86 16-32 (179)
348 2it1_A 362AA long hypothetical 44.3 5.8 0.0002 28.0 0.4 14 73-86 33-46 (362)
349 2pjz_A Hypothetical protein ST 44.3 5.8 0.0002 26.6 0.4 15 72-86 33-47 (263)
350 2fn4_A P23, RAS-related protei 44.3 7.6 0.00026 23.1 1.0 17 70-86 10-26 (181)
351 2ff7_A Alpha-hemolysin translo 44.2 5.9 0.0002 26.2 0.5 14 73-86 39-52 (247)
352 2atv_A RERG, RAS-like estrogen 44.2 11 0.00037 23.1 1.7 20 67-86 26-45 (196)
353 2ghi_A Transport protein; mult 44.1 5.9 0.0002 26.4 0.5 15 72-86 49-63 (260)
354 1vpl_A ABC transporter, ATP-bi 44.0 5.9 0.0002 26.4 0.4 14 73-86 45-58 (256)
355 2olj_A Amino acid ABC transpor 43.9 5.9 0.0002 26.5 0.4 14 73-86 54-67 (263)
356 2cbz_A Multidrug resistance-as 43.8 8.7 0.0003 25.1 1.3 14 73-86 35-48 (237)
357 2wsm_A Hydrogenase expression/ 43.7 11 0.00039 23.5 1.8 17 70-86 31-47 (221)
358 1zuh_A Shikimate kinase; alpha 43.6 9 0.00031 23.0 1.2 14 71-84 9-22 (168)
359 1svm_A Large T antigen; AAA+ f 43.6 18 0.00062 25.6 3.0 17 70-86 170-186 (377)
360 3d3q_A TRNA delta(2)-isopenten 43.4 8.7 0.0003 27.0 1.3 14 71-84 9-22 (340)
361 2bme_A RAB4A, RAS-related prot 43.4 8 0.00027 23.3 1.0 17 70-86 11-27 (186)
362 3p32_A Probable GTPase RV1496/ 43.4 21 0.00073 24.6 3.3 30 57-86 65-96 (355)
363 1v43_A Sugar-binding transport 43.3 6.1 0.00021 28.0 0.4 13 74-86 42-54 (372)
364 4f92_B U5 small nuclear ribonu 43.3 16 0.00056 31.0 3.0 25 59-84 933-957 (1724)
365 3bh0_A DNAB-like replicative h 43.1 16 0.00056 24.8 2.6 27 59-85 56-84 (315)
366 2d2e_A SUFC protein; ABC-ATPas 42.9 6.3 0.00021 26.0 0.5 14 73-86 33-46 (250)
367 2nq2_C Hypothetical ABC transp 42.9 6.4 0.00022 26.1 0.5 14 73-86 35-48 (253)
368 2xtp_A GTPase IMAP family memb 42.9 5.5 0.00019 25.9 0.1 18 69-86 22-39 (260)
369 2bov_A RAla, RAS-related prote 42.8 8.4 0.00029 23.6 1.0 17 70-86 15-31 (206)
370 2a9k_A RAS-related protein RAL 42.7 8.5 0.00029 23.0 1.0 17 70-86 19-35 (187)
371 2lkc_A Translation initiation 42.6 11 0.00039 22.3 1.6 18 69-86 8-25 (178)
372 3tqc_A Pantothenate kinase; bi 42.6 8.7 0.0003 26.7 1.1 16 71-86 94-109 (321)
373 2whx_A Serine protease/ntpase/ 42.5 9.4 0.00032 28.8 1.4 23 61-85 180-202 (618)
374 2efe_B Small GTP-binding prote 42.4 8.6 0.00029 22.9 1.0 18 69-86 12-29 (181)
375 2pze_A Cystic fibrosis transme 42.4 6.5 0.00022 25.6 0.4 14 73-86 38-51 (229)
376 3hr8_A Protein RECA; alpha and 42.3 17 0.00057 25.6 2.6 28 59-86 47-78 (356)
377 2x77_A ADP-ribosylation factor 42.2 16 0.00054 22.1 2.2 20 67-86 20-39 (189)
378 2qt1_A Nicotinamide riboside k 42.0 9.6 0.00033 23.8 1.2 15 71-85 23-37 (207)
379 4b4t_H 26S protease regulatory 41.9 7.6 0.00026 28.6 0.8 17 69-85 243-259 (467)
380 2v9p_A Replication protein E1; 41.9 9.8 0.00033 26.2 1.3 16 71-86 128-143 (305)
381 2zu0_C Probable ATP-dependent 41.9 6.6 0.00023 26.2 0.4 14 73-86 50-63 (267)
382 3kkq_A RAS-related protein M-R 41.8 9 0.00031 23.0 1.0 18 69-86 18-35 (183)
383 3clv_A RAB5 protein, putative; 41.7 9 0.00031 23.1 1.0 18 69-86 7-24 (208)
384 2qi9_C Vitamin B12 import ATP- 41.5 6.8 0.00023 26.0 0.4 14 73-86 30-43 (249)
385 2f9l_A RAB11B, member RAS onco 41.5 9.9 0.00034 23.4 1.2 16 71-86 7-22 (199)
386 1eaq_A RUNT-related transcript 41.4 10 0.00035 23.2 1.2 12 75-86 92-103 (140)
387 2dpy_A FLII, flagellum-specifi 41.4 11 0.00038 27.2 1.6 27 60-86 147-174 (438)
388 2wwf_A Thymidilate kinase, put 41.2 10 0.00034 23.6 1.2 14 71-84 12-25 (212)
389 2ihy_A ABC transporter, ATP-bi 41.2 6.9 0.00024 26.4 0.4 14 73-86 51-64 (279)
390 2ixe_A Antigen peptide transpo 41.2 6.9 0.00024 26.2 0.5 14 73-86 49-62 (271)
391 1pui_A ENGB, probable GTP-bind 41.2 10 0.00034 23.4 1.2 16 71-86 28-43 (210)
392 1mh1_A RAC1; GTP-binding, GTPa 41.1 9.3 0.00032 22.8 1.0 16 71-86 7-22 (186)
393 3be4_A Adenylate kinase; malar 40.8 9.1 0.00031 24.3 1.0 14 71-84 7-20 (217)
394 3zvl_A Bifunctional polynucleo 40.8 9 0.00031 27.2 1.0 19 67-85 256-274 (416)
395 3bc1_A RAS-related protein RAB 40.7 9.5 0.00033 22.9 1.0 17 70-86 12-28 (195)
396 2o5v_A DNA replication and rep 40.6 8.3 0.00028 27.1 0.8 16 71-86 28-43 (359)
397 1cke_A CK, MSSA, protein (cyti 40.6 11 0.00036 23.8 1.3 15 71-85 7-21 (227)
398 3qkt_A DNA double-strand break 40.5 11 0.00038 25.8 1.4 14 73-86 27-40 (339)
399 2r6a_A DNAB helicase, replicat 40.3 18 0.00063 25.8 2.6 28 59-86 191-220 (454)
400 3d31_A Sulfate/molybdate ABC t 40.0 5 0.00017 28.2 -0.4 14 73-86 30-43 (348)
401 2hxs_A RAB-26, RAS-related pro 39.9 10 0.00034 22.6 1.0 17 70-86 7-23 (178)
402 3umf_A Adenylate kinase; rossm 39.8 9.7 0.00033 24.8 1.0 14 71-84 31-44 (217)
403 2oil_A CATX-8, RAS-related pro 39.7 10 0.00034 23.1 1.0 17 70-86 26-42 (193)
404 3lxx_A GTPase IMAP family memb 39.6 6.8 0.00023 25.2 0.2 18 69-86 29-46 (239)
405 1oix_A RAS-related protein RAB 39.5 9.9 0.00034 23.4 1.0 17 70-86 30-46 (191)
406 2wjg_A FEOB, ferrous iron tran 39.4 10 0.00035 22.8 1.0 16 71-86 9-24 (188)
407 2h57_A ADP-ribosylation factor 39.2 10 0.00034 23.1 1.0 19 68-86 20-38 (190)
408 3bwd_D RAC-like GTP-binding pr 39.2 10 0.00036 22.6 1.0 18 69-86 8-25 (182)
409 3l0i_B RAS-related protein RAB 39.0 14 0.00047 22.7 1.6 17 70-86 34-50 (199)
410 2g6b_A RAS-related protein RAB 39.0 11 0.00036 22.5 1.0 17 70-86 11-27 (180)
411 2fu5_C RAS-related protein RAB 38.8 12 0.00042 22.3 1.3 17 70-86 9-25 (183)
412 1cr0_A DNA primase/helicase; R 38.8 11 0.00038 25.0 1.2 16 71-86 37-52 (296)
413 1u94_A RECA protein, recombina 38.8 20 0.00069 25.1 2.6 28 59-86 49-80 (356)
414 4b4t_I 26S protease regulatory 38.8 9.9 0.00034 27.8 1.0 16 70-85 217-232 (437)
415 2q6t_A DNAB replication FORK h 38.8 20 0.00069 25.6 2.6 27 59-85 188-216 (444)
416 2rcn_A Probable GTPase ENGC; Y 38.6 11 0.00038 26.6 1.2 21 64-86 212-232 (358)
417 1h65_A Chloroplast outer envel 38.6 23 0.00077 23.2 2.7 18 69-86 39-56 (270)
418 3ney_A 55 kDa erythrocyte memb 38.5 12 0.00041 24.1 1.3 15 72-86 22-36 (197)
419 1z06_A RAS-related protein RAB 38.4 11 0.00037 22.9 1.0 19 68-86 19-37 (189)
420 4a15_A XPD helicase, ATP-depen 38.4 23 0.00078 26.7 2.9 33 47-85 6-38 (620)
421 1z63_A Helicase of the SNF2/RA 38.4 15 0.00052 26.2 1.9 34 51-86 39-73 (500)
422 2il1_A RAB12; G-protein, GDP, 38.3 11 0.00037 23.1 1.0 18 69-86 26-43 (192)
423 3gd7_A Fusion complex of cysti 37.9 8.1 0.00028 27.6 0.4 13 74-86 52-64 (390)
424 1vg8_A RAS-related protein RAB 37.8 11 0.00038 23.0 1.0 17 70-86 9-25 (207)
425 2hf9_A Probable hydrogenase ni 37.8 31 0.0011 21.4 3.2 18 69-86 38-55 (226)
426 3t5g_A GTP-binding protein RHE 37.8 11 0.00038 22.5 1.0 16 71-86 8-23 (181)
427 2j37_W Signal recognition part 37.6 33 0.0011 25.3 3.6 16 71-86 103-118 (504)
428 3vkw_A Replicase large subunit 37.6 7.4 0.00025 28.5 0.1 18 70-87 162-179 (446)
429 1m7b_A RND3/RHOE small GTP-bin 37.5 11 0.00038 22.8 1.0 17 70-86 8-24 (184)
430 2h17_A ADP-ribosylation factor 37.4 10 0.00034 22.9 0.7 18 69-86 21-38 (181)
431 3lda_A DNA repair protein RAD5 37.4 21 0.00071 25.5 2.5 29 59-87 165-196 (400)
432 3tkl_A RAS-related protein RAB 37.3 12 0.0004 22.7 1.0 17 70-86 17-33 (196)
433 3tlx_A Adenylate kinase 2; str 37.3 13 0.00043 24.2 1.3 17 68-84 28-44 (243)
434 1bif_A 6-phosphofructo-2-kinas 37.1 13 0.00046 26.7 1.5 21 65-85 35-55 (469)
435 1nn5_A Similar to deoxythymidy 37.1 13 0.00044 23.1 1.2 15 71-85 11-25 (215)
436 2axn_A 6-phosphofructo-2-kinas 37.0 14 0.00048 27.2 1.6 18 68-85 34-51 (520)
437 2wv9_A Flavivirin protease NS2 36.9 13 0.00043 28.4 1.3 18 66-85 240-257 (673)
438 2fh5_B SR-beta, signal recogni 36.9 12 0.0004 23.2 1.0 16 71-86 9-24 (214)
439 2bbs_A Cystic fibrosis transme 36.7 8.7 0.0003 26.1 0.4 14 73-86 68-81 (290)
440 1x3s_A RAS-related protein RAB 36.7 12 0.00041 22.6 1.0 16 71-86 17-32 (195)
441 2bcg_Y Protein YP2, GTP-bindin 36.7 12 0.0004 23.1 1.0 17 70-86 9-25 (206)
442 1zbd_A Rabphilin-3A; G protein 36.5 12 0.00041 22.9 1.0 17 70-86 9-25 (203)
443 2a5j_A RAS-related protein RAB 36.3 12 0.00042 22.7 1.0 16 71-86 23-38 (191)
444 2o52_A RAS-related protein RAB 36.3 12 0.00041 23.1 1.0 17 70-86 26-42 (200)
445 2yc2_C IFT27, small RAB-relate 36.1 10 0.00035 23.2 0.6 18 69-86 20-37 (208)
446 2vp4_A Deoxynucleoside kinase; 36.0 16 0.00055 23.4 1.6 16 71-86 22-37 (230)
447 2gf9_A RAS-related protein RAB 36.0 13 0.00043 22.6 1.0 17 70-86 23-39 (189)
448 3t1o_A Gliding protein MGLA; G 36.0 13 0.00043 22.4 1.0 17 70-86 15-31 (198)
449 2gf0_A GTP-binding protein DI- 35.9 12 0.00042 22.6 1.0 18 69-86 8-25 (199)
450 4bas_A ADP-ribosylation factor 35.9 13 0.00043 22.6 1.0 17 70-86 18-34 (199)
451 2p5s_A RAS and EF-hand domain 35.8 13 0.00043 22.9 1.0 18 69-86 28-45 (199)
452 2vl7_A XPD; helicase, unknown 35.8 34 0.0012 25.0 3.5 33 47-85 10-42 (540)
453 3c5c_A RAS-like protein 12; GD 35.8 13 0.00043 22.7 1.0 18 69-86 21-38 (187)
454 3def_A T7I23.11 protein; chlor 35.7 30 0.001 22.6 2.9 19 68-86 35-53 (262)
455 1g41_A Heat shock protein HSLU 35.7 11 0.00037 27.5 0.8 15 71-85 52-66 (444)
456 2fg5_A RAB-22B, RAS-related pr 35.6 12 0.00042 22.8 1.0 18 69-86 23-40 (192)
457 1zd9_A ADP-ribosylation factor 35.5 13 0.00044 22.6 1.0 18 69-86 22-39 (188)
458 1xp8_A RECA protein, recombina 35.4 20 0.00069 25.2 2.1 29 58-86 59-91 (366)
459 3dz8_A RAS-related protein RAB 35.3 13 0.00043 22.7 1.0 15 71-85 25-39 (191)
460 1oxx_K GLCV, glucose, ABC tran 35.1 5.1 0.00018 28.1 -1.0 14 73-86 35-48 (353)
461 1m2o_B GTP-binding protein SAR 35.0 13 0.00044 22.8 1.0 17 70-86 24-40 (190)
462 1tf7_A KAIC; homohexamer, hexa 35.0 15 0.00051 26.8 1.4 18 69-86 39-56 (525)
463 2q3h_A RAS homolog gene family 35.0 13 0.00045 22.7 1.0 18 69-86 20-37 (201)
464 3cph_A RAS-related protein SEC 34.9 13 0.00045 22.8 1.0 17 70-86 21-37 (213)
465 2qu8_A Putative nucleolar GTP- 34.8 13 0.00045 23.5 1.0 19 68-86 28-46 (228)
466 2fv8_A H6, RHO-related GTP-bin 34.5 13 0.00045 23.0 1.0 19 68-86 24-42 (207)
467 3gj0_A GTP-binding nuclear pro 34.2 13 0.00046 23.2 1.0 17 70-86 16-32 (221)
468 2yv5_A YJEQ protein; hydrolase 34.1 10 0.00036 25.7 0.5 15 72-86 168-182 (302)
469 3ld9_A DTMP kinase, thymidylat 33.6 17 0.00057 23.8 1.4 17 69-85 21-37 (223)
470 3oes_A GTPase rhebl1; small GT 33.4 14 0.00049 22.7 1.0 17 70-86 25-41 (201)
471 2gco_A H9, RHO-related GTP-bin 33.2 16 0.00055 22.4 1.2 19 68-86 24-42 (201)
472 3reg_A RHO-like small GTPase; 33.0 15 0.00051 22.3 1.0 17 70-86 24-40 (194)
473 2atx_A Small GTP binding prote 33.0 15 0.0005 22.3 1.0 17 70-86 19-35 (194)
474 3ihw_A Centg3; RAS, centaurin, 32.9 15 0.00051 22.4 1.0 19 68-86 19-37 (184)
475 4djt_A GTP-binding nuclear pro 32.8 15 0.00051 22.8 1.0 18 69-86 11-28 (218)
476 3lxw_A GTPase IMAP family memb 32.8 10 0.00035 24.8 0.2 18 69-86 21-38 (247)
477 2j1l_A RHO-related GTP-binding 32.7 15 0.0005 23.0 1.0 18 69-86 34-51 (214)
478 4e22_A Cytidylate kinase; P-lo 32.6 17 0.00057 23.8 1.3 15 71-85 29-43 (252)
479 3llu_A RAS-related GTP-binding 32.6 15 0.00051 22.5 1.0 17 69-85 20-36 (196)
480 3bs4_A Uncharacterized protein 32.5 24 0.00081 23.7 2.0 27 59-86 8-37 (260)
481 3r20_A Cytidylate kinase; stru 32.5 17 0.00058 24.0 1.3 16 70-85 10-25 (233)
482 2ffh_A Protein (FFH); SRP54, s 32.4 53 0.0018 23.6 3.9 16 71-86 100-115 (425)
483 2iwr_A Centaurin gamma 1; ANK 32.3 13 0.00043 22.2 0.6 16 71-86 9-24 (178)
484 1qhl_A Protein (cell division 32.3 4.8 0.00016 26.5 -1.5 12 75-86 33-44 (227)
485 3tui_C Methionine import ATP-b 32.2 12 0.0004 26.6 0.4 13 74-86 59-71 (366)
486 3th5_A RAS-related C3 botulinu 38.2 9.7 0.00033 23.5 0.0 20 67-86 28-47 (204)
487 1ls1_A Signal recognition part 32.0 12 0.0004 25.4 0.4 16 71-86 100-115 (295)
488 2w00_A HSDR, R.ECOR124I; ATP-b 32.0 10 0.00035 30.5 0.2 14 74-87 305-318 (1038)
489 4gzl_A RAS-related C3 botulinu 31.9 15 0.00053 22.7 1.0 21 66-86 27-47 (204)
490 1gwn_A RHO-related GTP-binding 31.5 16 0.00054 22.8 1.0 18 69-86 28-45 (205)
491 1uj2_A Uridine-cytidine kinase 31.3 18 0.00062 23.4 1.3 16 70-85 23-38 (252)
492 2f7s_A C25KG, RAS-related prot 31.1 17 0.00057 22.6 1.0 17 70-86 26-42 (217)
493 2ew1_A RAS-related protein RAB 31.0 16 0.00056 22.7 1.0 17 70-86 27-43 (201)
494 3cbq_A GTP-binding protein REM 30.6 17 0.00059 22.4 1.0 17 70-86 24-40 (195)
495 1w1w_A Structural maintenance 30.5 19 0.00063 25.5 1.3 15 72-86 29-43 (430)
496 1g5t_A COB(I)alamin adenosyltr 30.3 9.1 0.00031 24.8 -0.3 21 68-88 27-47 (196)
497 1ii2_A Phosphoenolpyruvate car 30.1 19 0.00064 27.0 1.3 15 71-85 215-229 (524)
498 1zcb_A G alpha I/13; GTP-bindi 30.0 17 0.00059 25.5 1.0 17 69-85 33-49 (362)
499 1p5z_B DCK, deoxycytidine kina 29.8 25 0.00084 22.9 1.7 17 69-85 24-40 (263)
500 2j0v_A RAC-like GTP-binding pr 29.8 18 0.00061 22.3 1.0 17 70-86 10-26 (212)
No 1
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=99.97 E-value=5.7e-32 Score=192.76 Aligned_cols=90 Identities=42% Similarity=0.753 Sum_probs=84.1
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS 80 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~s 80 (97)
+|||||++.+|...+...|+.+.++...+.+..++.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||
T Consensus 16 ~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGS 95 (344)
T 4a14_A 16 ALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGS 95 (344)
T ss_dssp EEEECCCCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTS
T ss_pred EEEecccchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCC
Confidence 59999999999988888898888888888888999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCC
Q psy15017 81 GKTYTMGTGT 90 (97)
Q Consensus 81 GKt~T~~G~~ 90 (97)
||||||+|+.
T Consensus 96 GKTyTm~G~~ 105 (344)
T 4a14_A 96 GKTYTMGEAS 105 (344)
T ss_dssp SHHHHHCC--
T ss_pred CceEeecccc
Confidence 9999999874
No 2
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=99.97 E-value=6.7e-32 Score=192.75 Aligned_cols=94 Identities=36% Similarity=0.580 Sum_probs=82.0
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC-------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEG 67 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g 67 (97)
+||+||++.+|...+...++.+.+.+.++.+. ..+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 9 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 88 (350)
T 2vvg_A 9 IVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEG 88 (350)
T ss_dssp EEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTT
T ss_pred EEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCC
Confidence 59999999999887777777776655555442 25789999999999999999999999999999999
Q ss_pred CCEEEEeeccCCCccceeecCCCCCCC
Q psy15017 68 YNATILAYGQTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~~G~~~~~~ 94 (97)
+|+||||||||||||||||+|+.++++
T Consensus 89 ~n~tifAYGqTGSGKTyTm~G~~~~~G 115 (350)
T 2vvg_A 89 FNSTIFAYGQTGAGKTWTMGGNKEEPG 115 (350)
T ss_dssp CCEEEEEECSTTSSHHHHHTBCSSSBC
T ss_pred CceeEEeecCCCCCCCEEeecCCccCc
Confidence 999999999999999999999987765
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=99.97 E-value=4.2e-31 Score=189.82 Aligned_cols=93 Identities=38% Similarity=0.522 Sum_probs=83.0
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI 72 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v 72 (97)
+|||||++.+|...+...++.+.+.+..+.+. ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||
T Consensus 26 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti 105 (372)
T 3b6u_A 26 VVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTI 105 (372)
T ss_dssp EEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEE
T ss_pred EEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeE
Confidence 59999999999888877888877766666653 2578999999999999999999999999999999999999
Q ss_pred EeeccCCCccceeecCCCCCC
Q psy15017 73 LAYGQTGSGKTYTMGTGTFSP 93 (97)
Q Consensus 73 ~ayG~t~sGKt~T~~G~~~~~ 93 (97)
||||||||||||||+|...+|
T Consensus 106 fAYGqTGSGKTyTM~G~~~~~ 126 (372)
T 3b6u_A 106 FAYGQTGTGKTYTMEGIRGDP 126 (372)
T ss_dssp EEEESTTSSHHHHHTBCTTSG
T ss_pred EeecCCCCCCCEeEecCCCCc
Confidence 999999999999999976554
No 4
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=99.97 E-value=3.7e-31 Score=189.45 Aligned_cols=91 Identities=32% Similarity=0.519 Sum_probs=80.7
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI 72 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v 72 (97)
+|||||++.+|...+...++.+.+....+.+. ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||
T Consensus 13 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti 92 (359)
T 1x88_A 13 VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTI 92 (359)
T ss_dssp EEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEE
Confidence 59999999999887777777777666555442 2579999999999999999999999999999999999999
Q ss_pred EeeccCCCccceeecCCCC
Q psy15017 73 LAYGQTGSGKTYTMGTGTF 91 (97)
Q Consensus 73 ~ayG~t~sGKt~T~~G~~~ 91 (97)
||||||||||||||+|+..
T Consensus 93 fAYGqTGSGKTyTM~G~~~ 111 (359)
T 1x88_A 93 FAYGQTGTGKTFTMEGERS 111 (359)
T ss_dssp EEEECTTSSHHHHHTBCCC
T ss_pred EEeCCCCCCCceEEeccCC
Confidence 9999999999999999865
No 5
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=99.97 E-value=5.3e-31 Score=186.60 Aligned_cols=91 Identities=42% Similarity=0.640 Sum_probs=80.4
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS 80 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~s 80 (97)
+|||||++.+|...+...++.+.. +..+.+ ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||
T Consensus 12 ~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~-~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGS 89 (325)
T 1bg2_A 12 MCRFRPLNESEVNRGDKYIAKFQG-EDTVVI-ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS 89 (325)
T ss_dssp EEEECCCCHHHHHHTCCBCCEEET-TTEEEE-TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTS
T ss_pred EEEcCCCChhHhccCCeeEEEECC-CCeEEE-CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCC
Confidence 599999999998877766666544 444555 578999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCCC
Q psy15017 81 GKTYTMGTGTFSP 93 (97)
Q Consensus 81 GKt~T~~G~~~~~ 93 (97)
||||||+|+..+|
T Consensus 90 GKTyTm~G~~~~~ 102 (325)
T 1bg2_A 90 GKTHTMEGKLHDP 102 (325)
T ss_dssp SHHHHHTBSTTCT
T ss_pred CCceEecccCCCc
Confidence 9999999987665
No 6
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=5.6e-31 Score=188.29 Aligned_cols=94 Identities=33% Similarity=0.505 Sum_probs=78.6
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCe--------EE---------------eCCCeeeeccEEecCCCcHHHHHHHHH
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQ--------VT---------------LGADKSFTFDYVFDMADVQTTIYELCA 57 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~--------~~---------------~~~~~~F~fd~vf~~~~~q~~v~~~~~ 57 (97)
+|||||++.+|...+...++.+.++... +. ..+++.|.||+||+++++|++||+.++
T Consensus 15 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~ 94 (355)
T 3lre_A 15 VVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTT 94 (355)
T ss_dssp EEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHHHHHTTH
T ss_pred EEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHHHHHHHH
Confidence 5999999999998877776665432211 10 113468999999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEeeccCCCccceeecCCCCCCC
Q psy15017 58 ASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 58 ~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~ 94 (97)
.|+|+.+++|+|+||||||||||||||||+|+.++|+
T Consensus 95 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~G 131 (355)
T 3lre_A 95 KPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPG 131 (355)
T ss_dssp HHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBC
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCC
Confidence 9999999999999999999999999999999988775
No 7
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=99.97 E-value=1.3e-30 Score=186.94 Aligned_cols=92 Identities=36% Similarity=0.510 Sum_probs=80.2
Q ss_pred CEEecCCCchhhhcCCceEEEEcCC--CCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPG--EPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQT 78 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t 78 (97)
+|||||++.+|...+...++.+..+ +..+.+ ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||
T Consensus 16 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqT 94 (365)
T 2y65_A 16 VCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQT 94 (365)
T ss_dssp EEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE-TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECST
T ss_pred EEEcCcCChhHhccCCceEEEeCCCCCCcEEEE-CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCC
Confidence 5999999999987777767666543 344444 5789999999999999999999999999999999999999999999
Q ss_pred CCccceeecCCCCCC
Q psy15017 79 GSGKTYTMGTGTFSP 93 (97)
Q Consensus 79 ~sGKt~T~~G~~~~~ 93 (97)
||||||||+|...++
T Consensus 95 GSGKTyTm~G~~~~~ 109 (365)
T 2y65_A 95 SSGKTHTMEGVIGDS 109 (365)
T ss_dssp TSSHHHHHTBSTTCT
T ss_pred CCCCceEEecCCCCc
Confidence 999999999976554
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=99.97 E-value=1e-30 Score=191.23 Aligned_cols=94 Identities=33% Similarity=0.494 Sum_probs=79.6
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEe-------------------CCCeeeeccEEecCC-------CcHHHHHH
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-------------------GADKSFTFDYVFDMA-------DVQTTIYE 54 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-------------------~~~~~F~fd~vf~~~-------~~q~~v~~ 54 (97)
+|||||++.+|...+...++.+++....+.+ ...+.|+||+|||++ ++|++||+
T Consensus 43 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~ 122 (443)
T 2owm_A 43 VVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYD 122 (443)
T ss_dssp EEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCCCHHHHHH
T ss_pred EEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCCCHHHHHH
Confidence 5999999999987777666666554433222 136899999999874 79999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccceeecCCCCCCC
Q psy15017 55 LCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 55 ~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~ 94 (97)
.++.|+|+.+++|+|+||||||||||||||||+|+.++++
T Consensus 123 ~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~G 162 (443)
T 2owm_A 123 SLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPG 162 (443)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCC
T ss_pred hhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCc
Confidence 9999999999999999999999999999999999988765
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=99.96 E-value=8.7e-31 Score=187.94 Aligned_cols=91 Identities=31% Similarity=0.520 Sum_probs=76.6
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------CCeeeeccEEecCC--------CcHHHHHHHHHHHHHHHHhC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------ADKSFTFDYVFDMA--------DVQTTIYELCAASLVAGSLE 66 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~F~fd~vf~~~--------~~q~~v~~~~~~p~v~~~~~ 66 (97)
+|||||++.+|...+...++.+... ...... ..+.|.||+|||++ ++|++||+.++.|+|+.+++
T Consensus 9 ~vRvRP~~~~E~~~~~~~~v~~~~~-~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~ 87 (366)
T 2zfi_A 9 AVRVRPFNSREMSRDSKCIIQMSGS-TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFE 87 (366)
T ss_dssp EEEECCCCHHHHHTTCCBCEEEETT-EEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHT
T ss_pred EEECCCCChhhccCCCCeEEEECCC-cEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhc
Confidence 5999999999987776666665443 222221 35899999999997 79999999999999999999
Q ss_pred CCCEEEEeeccCCCccceeecCCCCC
Q psy15017 67 GYNATILAYGQTGSGKTYTMGTGTFS 92 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~~G~~~~ 92 (97)
|+|+||||||||||||||||+|+.+.
T Consensus 88 G~N~tifAYGqTGSGKTyTm~G~~~~ 113 (366)
T 2zfi_A 88 GYNVCIFAYGQTGAGKSYTMMGKQEK 113 (366)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBCSGG
T ss_pred CCeeEEEEeCCCCCCCceEeeCCCcc
Confidence 99999999999999999999998643
No 10
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=99.96 E-value=4.9e-31 Score=188.25 Aligned_cols=94 Identities=34% Similarity=0.491 Sum_probs=79.3
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEE-eCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVT-LGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTG 79 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~ 79 (97)
+|||||++.+|...+...++.+..++..+. ....+.|.||+|||++++|++||+.++.|+|+.+++|+|+|||||||||
T Consensus 9 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTG 88 (349)
T 1t5c_A 9 CVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTA 88 (349)
T ss_dssp EEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTT
T ss_pred EEECCCCChhhhccCCCcEEEEeCCCCeEEECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCC
Confidence 599999999997665554444433344333 3457899999999999999999999999999999999999999999999
Q ss_pred CccceeecCCCCCCC
Q psy15017 80 SGKTYTMGTGTFSPI 94 (97)
Q Consensus 80 sGKt~T~~G~~~~~~ 94 (97)
|||||||+|+.++++
T Consensus 89 SGKTyTM~G~~~~~G 103 (349)
T 1t5c_A 89 SGKTYTMMGSEDHLG 103 (349)
T ss_dssp SSHHHHHTBCSSSBC
T ss_pred CCCCeEEecCCCCCc
Confidence 999999999987765
No 11
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=99.96 E-value=3.7e-30 Score=185.02 Aligned_cols=91 Identities=35% Similarity=0.478 Sum_probs=78.1
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEe-----CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEee
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAY 75 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ay 75 (97)
+|||||++.+|.......++.+......+.. ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||||
T Consensus 28 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAY 107 (373)
T 2wbe_C 28 YVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAY 107 (373)
T ss_dssp EEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEee
Confidence 5999999999987766667666544332221 23689999999999999999999999999999999999999999
Q ss_pred ccCCCccceeecCCCC
Q psy15017 76 GQTGSGKTYTMGTGTF 91 (97)
Q Consensus 76 G~t~sGKt~T~~G~~~ 91 (97)
|||||||||||+|+..
T Consensus 108 GqTGSGKTyTm~G~~~ 123 (373)
T 2wbe_C 108 GQTGTGKTHTMVGNET 123 (373)
T ss_dssp CSTTSSHHHHHTBSCS
T ss_pred cCCCCCcceecccCcc
Confidence 9999999999999875
No 12
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=99.96 E-value=5e-30 Score=183.38 Aligned_cols=89 Identities=38% Similarity=0.589 Sum_probs=78.1
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEe---CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeecc
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL---GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQ 77 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~ 77 (97)
+|||||++.+|...+...++.+.+++. +.+ ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+
T Consensus 11 ~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGq 89 (355)
T 1goj_A 11 VARFRPQNRVEIESGGQPIVTFQGPDT-CTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQ 89 (355)
T ss_dssp EEEECCCCHHHHTTTCCBCEEECSTTE-EEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECS
T ss_pred EEECCCCChHHhhcCCceEEEEcCCCe-EEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECC
Confidence 599999999998877777777655443 333 2468999999999999999999999999999999999999999999
Q ss_pred CCCccceeecCCC
Q psy15017 78 TGSGKTYTMGTGT 90 (97)
Q Consensus 78 t~sGKt~T~~G~~ 90 (97)
|||||||||+|+.
T Consensus 90 TGSGKTyTm~G~~ 102 (355)
T 1goj_A 90 TGAGKSYTMMGTS 102 (355)
T ss_dssp TTSSHHHHHTBSC
T ss_pred CCCCcceEeecCC
Confidence 9999999999964
No 13
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=187.44 Aligned_cols=93 Identities=27% Similarity=0.349 Sum_probs=66.0
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEe------CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL------GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILA 74 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~------~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~a 74 (97)
+|||||++.+|.......|+...+.. .+.+ ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus 26 ~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifA 104 (388)
T 3bfn_A 26 AVRLRPFVDGTAGASDPPCVRGMDSC-SLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLA 104 (388)
T ss_dssp EEEECCCC------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEE
T ss_pred EEECCCCChhhhccCCCceEEecCCC-eEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEee
Confidence 59999999999766555665543322 2222 1347899999999999999999999999999999999999999
Q ss_pred eccCCCccceeecCCCCCCC
Q psy15017 75 YGQTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 75 yG~t~sGKt~T~~G~~~~~~ 94 (97)
||||||||||||+|+.++++
T Consensus 105 YGqTGSGKTyTM~G~~~~~G 124 (388)
T 3bfn_A 105 YGPTGAGKTHTMLGSPEQPG 124 (388)
T ss_dssp ESCTTSSHHHHHTBCSSSBC
T ss_pred ecCCCCCCCeEeecCccccc
Confidence 99999999999999987765
No 14
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=99.96 E-value=3e-30 Score=186.10 Aligned_cols=89 Identities=33% Similarity=0.485 Sum_probs=73.9
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY 68 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~ 68 (97)
+|||||++.+|...+...++.+.. +..+.+. ..+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 56 ~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~ 134 (387)
T 2heh_A 56 CVRKRPLNKQELAKKEIDVISIPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 134 (387)
T ss_dssp EEEECCCCHHHHHTTCCBCEECCB-SSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTC
T ss_pred EEECCCCChHHhccCCceEEEECC-CCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCC
Confidence 599999999998777666666543 3333321 246899999999999999999999999999999999
Q ss_pred CEEEEeeccCCCccceeecCCC
Q psy15017 69 NATILAYGQTGSGKTYTMGTGT 90 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~G~~ 90 (97)
|+||||||||||||||||+|+.
T Consensus 135 N~tifAYGQTGSGKTyTM~G~~ 156 (387)
T 2heh_A 135 KATCFAYGQTGSGKTHTMGGDL 156 (387)
T ss_dssp EEEEEEESCTTSSHHHHHC---
T ss_pred ceEEEEecCCCCCCCeEeccCC
Confidence 9999999999999999999964
No 15
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=99.96 E-value=4.6e-30 Score=186.20 Aligned_cols=89 Identities=34% Similarity=0.478 Sum_probs=76.2
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY 68 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~ 68 (97)
+|||||++.+|...+...++.+.++ ..+.+. ..+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 76 ~vRvRPl~~~E~~~~~~~~v~~~~~-~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~ 154 (410)
T 1v8k_A 76 CVRKRPLNKQELAKKEIDVISVPSK-CLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 154 (410)
T ss_dssp EEEECCCCHHHHHTTCCBCEECCSS-SEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTC
T ss_pred EEEeCCCChhHhhcCCccEEEECCC-CEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCC
Confidence 5999999999988777766666433 333321 246899999999999999999999999999999999
Q ss_pred CEEEEeeccCCCccceeecCCC
Q psy15017 69 NATILAYGQTGSGKTYTMGTGT 90 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~G~~ 90 (97)
|+||||||||||||||||+|+.
T Consensus 155 N~tifAYGQTGSGKTyTM~G~~ 176 (410)
T 1v8k_A 155 KATCFAYGQTGSGKTHTMGGDL 176 (410)
T ss_dssp EEEEEEEESTTSSHHHHHHCBC
T ss_pred ceeEEeecCCCCCCCeEeecCC
Confidence 9999999999999999999964
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=99.96 E-value=1.2e-29 Score=181.36 Aligned_cols=92 Identities=35% Similarity=0.506 Sum_probs=76.5
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEe-------------CCCeeeeccEEecC--------CCcHHHHHHHHHHH
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-------------GADKSFTFDYVFDM--------ADVQTTIYELCAAS 59 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-------------~~~~~F~fd~vf~~--------~~~q~~v~~~~~~p 59 (97)
+|||||++.+|.......++.++.. . +.+ ...+.|.||+|||+ .++|++||+.++.|
T Consensus 6 ~vRvRPl~~~E~~~~~~~vv~~~~~-~-~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~ 83 (354)
T 3gbj_A 6 AVRIRPMNRRETDLHTKCVVDVDAN-K-VILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGEN 83 (354)
T ss_dssp EEEECCCCHHHHHHTCCBCEEEETT-E-EEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHH
T ss_pred EEECCCCChhhhccCCceEEEeCCC-e-EEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhhHH
Confidence 5999999999987766666555432 2 221 13688999999964 46899999999999
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceeecCCCCCCC
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~ 94 (97)
+|+.+++|+|+||||||+|||||||||+|+.++|+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~G 118 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPG 118 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBC
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCc
Confidence 99999999999999999999999999999988765
No 17
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=99.96 E-value=1.2e-29 Score=180.79 Aligned_cols=89 Identities=29% Similarity=0.417 Sum_probs=69.9
Q ss_pred CEEecCCCchhhhcCCceEEEEcC-CCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTP-GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTG 79 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~ 79 (97)
+|||||++..|.. ....++...+ .+........+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||||||||
T Consensus 27 ~vRvRP~~~~e~~-~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTG 105 (344)
T 3dc4_A 27 AVREAPYRQFLGR-REPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG 105 (344)
T ss_dssp EEEECCCC--------CCSEECCSSSCSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTT
T ss_pred EEECCCCCccccc-CCceEEEecCCCCCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCC
Confidence 5899999988743 3444555443 2333333468999999999999999999999999999999999999999999999
Q ss_pred CccceeecCCC
Q psy15017 80 SGKTYTMGTGT 90 (97)
Q Consensus 80 sGKt~T~~G~~ 90 (97)
|||||||+|+.
T Consensus 106 SGKTyTM~g~~ 116 (344)
T 3dc4_A 106 TGKSYSMGMTP 116 (344)
T ss_dssp SSHHHHHTCSC
T ss_pred CCCCeEEcCCC
Confidence 99999998875
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=179.88 Aligned_cols=93 Identities=30% Similarity=0.517 Sum_probs=75.4
Q ss_pred CEEecCCCchhhhcC-CceEEEEcCCCC-eEEe---CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEee
Q psy15017 1 MCKIRPQSAREVIDM-CRVCTFVTPGEP-QVTL---GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAY 75 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~-~~~~~~~~~~~~-~~~~---~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ay 75 (97)
+|||||++.+|.... ...++.+++.+. .+.+ ...+.|.||+||+++++|++||+. +.|+|+.+++|+|+|||||
T Consensus 9 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAY 87 (330)
T 2h58_A 9 IARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAY 87 (330)
T ss_dssp EEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEE
T ss_pred EEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEEEEEeE
Confidence 599999999986432 233445544333 3322 245789999999999999999998 5899999999999999999
Q ss_pred ccCCCccceeecCCCCCCC
Q psy15017 76 GQTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 76 G~t~sGKt~T~~G~~~~~~ 94 (97)
|||||||||||+|+.++|+
T Consensus 88 GqTGSGKTyTm~G~~~~~G 106 (330)
T 2h58_A 88 GQTGAGKTYTMEGTAENPG 106 (330)
T ss_dssp SSTTSSHHHHHTBCSSSBC
T ss_pred CCCCCCCcEEEecCCCCCc
Confidence 9999999999999988765
No 19
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=99.96 E-value=1.8e-29 Score=180.82 Aligned_cols=89 Identities=33% Similarity=0.373 Sum_probs=75.9
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC-C
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE-G 67 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~-g 67 (97)
+|||||++.+|...+...++.+.++ ..+.+. ..+.|.||+||+++++|++||+.++.|+|+++++ |
T Consensus 5 ~vRvRP~~~~E~~~~~~~~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G 83 (360)
T 1ry6_A 5 VVRKRPLSELEKKKKDSDIITVKNN-CTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENG 83 (360)
T ss_dssp EEEECCCCHHHHHTTCCBCEEEEET-TEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHC
T ss_pred EEECCCCChHHhccCCceEEEECCC-CEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCC
Confidence 5999999999988777777666443 333321 2468999999999999999999999999999996 9
Q ss_pred CCEEEEeeccCCCccceeecCCC
Q psy15017 68 YNATILAYGQTGSGKTYTMGTGT 90 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~~G~~ 90 (97)
+|+||||||||||||||||+|+.
T Consensus 84 ~n~tifAYGqTGSGKTyTM~G~~ 106 (360)
T 1ry6_A 84 CVCSCFAYGQTGSGKTYTMLGSQ 106 (360)
T ss_dssp CEEEEEEECCTTSSHHHHHHBSS
T ss_pred ceeEEEeeCCCCCCCCEEEecCC
Confidence 99999999999999999999975
No 20
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=99.96 E-value=3.8e-29 Score=179.55 Aligned_cols=92 Identities=36% Similarity=0.556 Sum_probs=76.1
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEe----CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeec
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYG 76 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG 76 (97)
+|||||++.+|.......++. ..++..+.. ...+.|.||+||+++++|++||+. +.|+|+.+++|+|+||||||
T Consensus 10 ~vRvRP~~~~E~~~~~~~~~~-~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYG 87 (369)
T 3cob_A 10 YCRLRPLCEKEIIAKERNAIR-SVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYG 87 (369)
T ss_dssp EEEECCCCHHHHHTTCCBCEE-ECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEE
T ss_pred EEECCCCChhhccCCCcEEEE-cCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEEC
Confidence 599999999997665543332 233333332 134899999999999999999999 69999999999999999999
Q ss_pred cCCCccceeecCCCCCCC
Q psy15017 77 QTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 77 ~t~sGKt~T~~G~~~~~~ 94 (97)
+|||||||||+|+.++|+
T Consensus 88 qTGSGKTyTM~G~~~~~G 105 (369)
T 3cob_A 88 QTGSGKTFTIYGADSNPG 105 (369)
T ss_dssp CTTSSHHHHHTBCSSSBC
T ss_pred CCCCCCeEeecCCCCCCc
Confidence 999999999999987765
No 21
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=5e-29 Score=178.41 Aligned_cols=86 Identities=34% Similarity=0.521 Sum_probs=67.8
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEe--------------CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------------GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE 66 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~ 66 (97)
||||||++..|.. ++...++...+.+ ...++|.||+||+ +++|++||+.++.|+|+.+++
T Consensus 29 ~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~ 102 (359)
T 3nwn_A 29 FVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALD 102 (359)
T ss_dssp EEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHT
T ss_pred EEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHhC
Confidence 6999999877642 1122222222221 1346899999998 578999999999999999999
Q ss_pred CCCEEEEeeccCCCccceeecCCCCC
Q psy15017 67 GYNATILAYGQTGSGKTYTMGTGTFS 92 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~~G~~~~ 92 (97)
|+|+||||||||||||||||+|...+
T Consensus 103 G~N~tifAYGQTGSGKTyTM~G~~~~ 128 (359)
T 3nwn_A 103 GYNGTIMCYGQTGAGKTYTMMGATEN 128 (359)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCSSC
T ss_pred CCCEEEEEeCCCCCCccEEeCCccCC
Confidence 99999999999999999999997655
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=99.95 E-value=8.2e-29 Score=178.16 Aligned_cols=90 Identities=37% Similarity=0.588 Sum_probs=68.6
Q ss_pred CEEecCCCchhhhcCCceEEEEc------CCCCeEEeC----------------CCeeeeccEEecCCCcHHHHHHHHHH
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVT------PGEPQVTLG----------------ADKSFTFDYVFDMADVQTTIYELCAA 58 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~------~~~~~~~~~----------------~~~~F~fd~vf~~~~~q~~v~~~~~~ 58 (97)
+|||||++.+|.......+.... .++..+.+. ..+.|.||+||+++++|++||+. +.
T Consensus 27 ~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~-v~ 105 (376)
T 2rep_A 27 FCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEE-IA 105 (376)
T ss_dssp EEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHHHHHH-HH
T ss_pred EEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchhhhhh-HH
Confidence 59999999999754322111100 122222221 24689999999999999999998 46
Q ss_pred HHHHHHhCCCCEEEEeeccCCCccceeecCCCC
Q psy15017 59 SLVAGSLEGYNATILAYGQTGSGKTYTMGTGTF 91 (97)
Q Consensus 59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~ 91 (97)
|+|+.+++|+|+||||||||||||||||+|+..
T Consensus 106 ~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~ 138 (376)
T 2rep_A 106 MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPG 138 (376)
T ss_dssp HHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSS
T ss_pred HHHHHhcCCCceEEEEeCCCCCCCceEeecCCC
Confidence 899999999999999999999999999999764
No 23
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=99.95 E-value=9.5e-29 Score=179.55 Aligned_cols=91 Identities=44% Similarity=0.733 Sum_probs=72.6
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC----------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCE
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG----------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNA 70 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~----------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~ 70 (97)
+|||||++..|..... +.....++..+.+. ..+.|.||+||+++++|++||+. +.|+|+.+++|+|+
T Consensus 64 ~vRvRP~~~~E~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~ 140 (412)
T 3u06_A 64 FCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNI 140 (412)
T ss_dssp EEEECCCCGGGTTSCB--CEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCE
T ss_pred EEEcCCCCchhccCcc--eEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCce
Confidence 6999999999865432 22222233333321 24789999999999999999985 67999999999999
Q ss_pred EEEeeccCCCccceeecCCCCCCC
Q psy15017 71 TILAYGQTGSGKTYTMGTGTFSPI 94 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~~G~~~~~~ 94 (97)
||||||+|||||||||+|..++++
T Consensus 141 tifAYGqTGSGKTyTM~G~~~~~G 164 (412)
T 3u06_A 141 CIFAYGQTGSGKTYTMDGVPESVG 164 (412)
T ss_dssp EEEEESSTTSSHHHHHTEETTEEC
T ss_pred EEEEecCCCCCCeeEecCCCCCCc
Confidence 999999999999999999887664
No 24
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=99.95 E-value=2.9e-28 Score=173.95 Aligned_cols=89 Identities=38% Similarity=0.623 Sum_probs=70.8
Q ss_pred CEEecCCCchhhhcCCceEEEEcCC---CCeEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEE
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPG---EPQVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNAT 71 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~---~~~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~ 71 (97)
+|||||++.+|.......++...++ ...+.+. ..+.|.||+||+++++|++||+. +.|+|+.+++|+|+|
T Consensus 10 ~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n~t 88 (349)
T 3t0q_A 10 YCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVC 88 (349)
T ss_dssp EEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCEEE
T ss_pred EEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHH-HHHHHHHHHCCccee
Confidence 6999999999976654444432111 1123321 14689999999999999999997 579999999999999
Q ss_pred EEeeccCCCccceeecCCC
Q psy15017 72 ILAYGQTGSGKTYTMGTGT 90 (97)
Q Consensus 72 v~ayG~t~sGKt~T~~G~~ 90 (97)
|||||||||||||||+|+.
T Consensus 89 ifAYGqTGSGKTyTm~g~~ 107 (349)
T 3t0q_A 89 IFAYGQTGSGKTYTMLNAG 107 (349)
T ss_dssp EEEECSTTSSHHHHHHSTT
T ss_pred EEEeCCCCCCCceEeCCCC
Confidence 9999999999999999864
No 25
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=99.94 E-value=8.2e-28 Score=171.51 Aligned_cols=87 Identities=37% Similarity=0.573 Sum_probs=67.6
Q ss_pred CEEecCCCc-hhhhcCCceEEEEcC---C--CCeEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017 1 MCKIRPQSA-REVIDMCRVCTFVTP---G--EPQVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY 68 (97)
Q Consensus 1 ~vRvRP~~~-~e~~~~~~~~~~~~~---~--~~~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~ 68 (97)
+|||||++. +|. ....++.+.. . ...+.+. ..+.|.||+||+++++|++||+. +.|+|+.+++|+
T Consensus 8 ~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~ 84 (347)
T 1f9v_A 8 YCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGY 84 (347)
T ss_dssp EEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTC
T ss_pred EEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCc
Confidence 599999987 442 2233333321 1 1223332 35899999999999999999998 579999999999
Q ss_pred CEEEEeeccCCCccceeecCCC
Q psy15017 69 NATILAYGQTGSGKTYTMGTGT 90 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~G~~ 90 (97)
|+||||||||||||||||+|..
T Consensus 85 n~tifAYGqTGSGKTyTM~G~~ 106 (347)
T 1f9v_A 85 NVCIFAYGQTGSGKTFTMLNPG 106 (347)
T ss_dssp CEEEEEECCTTSSHHHHHHSTT
T ss_pred eeEEEEECCCCCCCcEeccCCC
Confidence 9999999999999999999863
No 26
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=99.94 E-value=4.8e-27 Score=168.11 Aligned_cols=86 Identities=34% Similarity=0.522 Sum_probs=69.1
Q ss_pred CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC
Q psy15017 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE 66 (97)
Q Consensus 1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~ 66 (97)
||||||+...+. .++.+.+++..+.+. ..+.|.||+||+ +++|++||+.++.|+|+.+++
T Consensus 28 ~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~~l~ 101 (358)
T 2nr8_A 28 FVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALD 101 (358)
T ss_dssp EEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHT
T ss_pred EEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHHHHHHhC
Confidence 699999876442 223334444443321 246799999996 789999999999999999999
Q ss_pred CCCEEEEeeccCCCccceeecCCCCC
Q psy15017 67 GYNATILAYGQTGSGKTYTMGTGTFS 92 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~~G~~~~ 92 (97)
|+|+||||||||||||||||+|+.++
T Consensus 102 G~N~tIfAYGqTGSGKTyTM~G~~~~ 127 (358)
T 2nr8_A 102 GYNGTIMCYGQTGAGKTYTMMGATEN 127 (358)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCSSC
T ss_pred CCceEEEEECCCCCCCceEecccccc
Confidence 99999999999999999999998765
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.7e-27 Score=169.89 Aligned_cols=89 Identities=34% Similarity=0.516 Sum_probs=66.1
Q ss_pred CEEecCCCchh-hhcCCceEEEE-cCCCC--eEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCE
Q psy15017 1 MCKIRPQSARE-VIDMCRVCTFV-TPGEP--QVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNA 70 (97)
Q Consensus 1 ~vRvRP~~~~e-~~~~~~~~~~~-~~~~~--~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~ 70 (97)
||||||+...+ ........+.. ++... .+.+. ..+.|.||+||+++++|++||+. +.|+|+.+++|+|+
T Consensus 64 ~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~ 142 (403)
T 4etp_A 64 YLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNV 142 (403)
T ss_dssp EEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCE
T ss_pred EEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcce
Confidence 69999998773 22222222211 11111 12221 24789999999999999999987 56899999999999
Q ss_pred EEEeeccCCCccceeecCCC
Q psy15017 71 TILAYGQTGSGKTYTMGTGT 90 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~~G~~ 90 (97)
||||||+|||||||||+|+.
T Consensus 143 tifAYGqTGSGKTyTM~g~~ 162 (403)
T 4etp_A 143 AIFAYGQTGSGKTFTMLNPG 162 (403)
T ss_dssp EEEEESCTTSSHHHHHHCTT
T ss_pred EEEEECCCCCCCceEeCCCC
Confidence 99999999999999999863
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.89 E-value=6.2e-24 Score=162.35 Aligned_cols=88 Identities=31% Similarity=0.598 Sum_probs=61.2
Q ss_pred CEEec----CCCchhhhcCCceEEEEcCCC------CeEEeC-------CCeeeeccEEecCCCcHHHHHHHHHHHHHHH
Q psy15017 1 MCKIR----PQSAREVIDMCRVCTFVTPGE------PQVTLG-------ADKSFTFDYVFDMADVQTTIYELCAASLVAG 63 (97)
Q Consensus 1 ~vRvR----P~~~~e~~~~~~~~~~~~~~~------~~~~~~-------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~ 63 (97)
||||| |....|...+......-.+++ ..+.+. .+++|+||+||+++++|++||+. +.|+|+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~ 457 (715)
T 4h1g_A 379 FCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE-LSQLIQC 457 (715)
T ss_dssp EEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGG-THHHHHH
T ss_pred EEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHH-HHHHHHH
Confidence 69999 555555544444433322222 223321 36899999999999999999986 5699999
Q ss_pred HhCCCCEEEEeeccCCCccceeecCC
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTMGTG 89 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~~G~ 89 (97)
+++|+|+||||||||||||||||.|.
T Consensus 458 ~~~G~n~~i~ayGqtgsGKT~Tm~g~ 483 (715)
T 4h1g_A 458 SLDGTNVCVFAYGQTGSGKTFTMSHP 483 (715)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHHHCT
T ss_pred HhCCceEEEEccCCCCCchhhccCCC
Confidence 99999999999999999999999885
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.6e-16 Score=109.14 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=46.9
Q ss_pred CeeeeccEEecCCCcHH--HHHHHHHHHHHHHHhC-CCCEEEEeeccCCCccce
Q psy15017 34 DKSFTFDYVFDMADVQT--TIYELCAASLVAGSLE-GYNATILAYGQTGSGKTY 84 (97)
Q Consensus 34 ~~~F~fd~vf~~~~~q~--~v~~~~~~p~v~~~~~-g~n~~v~ayG~t~sGKt~ 84 (97)
.+.|.||+||++...|+ ++|++ +.++++.+++ |+|+|||||||||||||.
T Consensus 56 ~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT~ 108 (298)
T 2o0a_A 56 EHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSLR 108 (298)
T ss_dssp CCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHHH
T ss_pred CceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCccH
Confidence 38999999999999999 99999 7889999998 999999999999999983
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.13 E-value=0.001 Score=42.00 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=32.4
Q ss_pred eeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+..+||........|+.+++. +...++.+-......++-+|.+|+|||+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hhCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 445677655545567777755 344444433223345667999999999876
No 31
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.96 E-value=0.0084 Score=38.25 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=29.7
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC-CEEEEeeccCCCccceee
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGY-NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~-n~~v~ayG~t~sGKt~T~ 86 (97)
..+|+........+..+++. +...+...-.+. +..++-+|.+|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 45666554444456666664 233333332222 256778999999999875
No 32
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.81 E-value=0.0095 Score=41.20 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=28.8
Q ss_pred eeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 37 F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+|+........+..++. .+...++..-.+....++-||.+|+||||.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 456554333334455555 2334444433333456778999999999976
No 33
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.00 E-value=0.037 Score=34.03 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+++.+..+....++-+|..|+|||+.+
T Consensus 34 l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 34 TIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 444455565667788999999999865
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.61 E-value=0.038 Score=33.98 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+++.+..+....++-+|.+|+|||+.+
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 444455565667888999999999865
No 35
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.039 Score=38.67 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHhCCCCEEEEeeccCCCccceee
Q psy15017 63 GSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 63 ~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+..+...+++-||.+|+|||.++
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HhcCCCCCeEEEECCCCCCHHHHH
Confidence 344688889999999999999765
No 36
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.63 E-value=0.056 Score=35.88 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=20.2
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++|+.+.+.+..-..+.+ .+..+... +..++-+|.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~~~-~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLAPL-DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHTTS-CSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHhCC-CCCEEEECCCCCcHHHHH
Confidence 3567776654333233322 22333322 345667999999999864
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.14 E-value=0.086 Score=35.94 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=29.4
Q ss_pred ccEEecCCCcHHHHHHHHHHHHHHHHhC--CC--CEEEEeeccCCCccceee
Q psy15017 39 FDYVFDMADVQTTIYELCAASLVAGSLE--GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 39 fd~vf~~~~~q~~v~~~~~~p~v~~~~~--g~--n~~v~ayG~t~sGKt~T~ 86 (97)
|+..++...-...+.+..+..++...+. +. ...++-||.+|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444444444555666666666665543 22 235677899999999754
No 38
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.87 E-value=0.13 Score=37.26 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+..++......+...|.+|||||.||
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455556555667778899999999887
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.26 E-value=0.18 Score=32.21 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.7
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....++-||.+|+|||+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4557788999999999865
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.00 E-value=0.16 Score=31.80 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=15.8
Q ss_pred CCCCEEEEeeccCCCccceee
Q psy15017 66 EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+....++-+|..|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343334888999999999865
No 41
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.51 E-value=0.11 Score=32.03 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.5
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-+|.+|+|||+.+
T Consensus 38 ~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLL 53 (149)
T ss_dssp EEEEESSSTTTTCHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566999999999976
No 42
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.38 E-value=0.24 Score=34.11 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHHHHhCC-CCE--EEEeeccCCCccceee
Q psy15017 47 DVQTTIYELCAASLVAGSLEG-YNA--TILAYGQTGSGKTYTM 86 (97)
Q Consensus 47 ~~q~~v~~~~~~p~v~~~~~g-~n~--~v~ayG~t~sGKt~T~ 86 (97)
..++...+.+.. .+...+.| ... +++-+|.+|+|||..+
T Consensus 20 ~gr~~~~~~l~~-~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLDI-LLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHHH-HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHH-HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 345555544333 33444433 334 6788999999999875
No 43
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.19 E-value=0.32 Score=30.64 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=17.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||||||.+
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~ 56 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGA 56 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHH
Confidence 3455677876 44678999999954
No 44
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=89.19 E-value=0.26 Score=31.49 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=18.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556678876 55679999999976
No 45
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.04 E-value=0.16 Score=35.96 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=19.2
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+..++.-....+...|.+|||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344445444456777899999999887
No 46
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=88.84 E-value=0.28 Score=31.89 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=18.5
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||||||..
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556778877 46678999999975
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.62 E-value=0.062 Score=36.99 Aligned_cols=46 Identities=33% Similarity=0.394 Sum_probs=26.4
Q ss_pred cEEecCCCcHHHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017 40 DYVFDMADVQTTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 40 d~vf~~~~~q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++..+.-..++...+.... .+..++ .+...+++-||.+|+|||..+
T Consensus 15 ~~~p~~~~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3333333445555544322 222333 344557888999999999865
No 48
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.59 E-value=0.19 Score=33.06 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=13.4
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
++-||.+|+|||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 49
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.56 E-value=0.31 Score=30.63 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=17.7
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 3456677876 44568999999976
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.49 E-value=0.41 Score=31.75 Aligned_cols=21 Identities=29% Similarity=0.214 Sum_probs=17.2
Q ss_pred CCCCEEEEeeccCCCccceee
Q psy15017 66 EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~T~ 86 (97)
......++-||.+|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 455667888999999999864
No 51
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.35 E-value=0.19 Score=33.50 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=28.7
Q ss_pred CeeeeccEEecCCCcHHHHHHHHHHHHHHH-Hh----CCCCEEEEeeccCCCccceee
Q psy15017 34 DKSFTFDYVFDMADVQTTIYELCAASLVAG-SL----EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~-~~----~g~n~~v~ayG~t~sGKt~T~ 86 (97)
...+.|+.+.+.+...+.+.+.+..++... ++ -.....++-||.+|+|||+.+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345667766654444444443333322111 11 123445778999999999765
No 52
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=88.25 E-value=0.2 Score=32.65 Aligned_cols=24 Identities=38% Similarity=0.725 Sum_probs=18.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||||||..
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556778877 45689999999965
No 53
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=87.85 E-value=0.28 Score=33.42 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.+..++.|..-.+++.+.||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 45677887333466789999999964
No 54
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=87.47 E-value=0.37 Score=34.50 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=20.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.+..++.|.+..++..+.||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45667777556678899999999965
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.15 E-value=0.21 Score=34.01 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=14.5
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...++-||.+|+|||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 345778999999999764
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.98 E-value=0.2 Score=33.06 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=27.7
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHH-----HHHhCCCCEEEEeeccCCCccceee
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLV-----AGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v-----~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+.|+.+.+.+...+.+.+. +..+- ..+-......++-||.+|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 45677776666555555432 22111 1111122234778999999999865
No 57
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.92 E-value=0.44 Score=30.78 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=17.8
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||||||..
T Consensus 55 ~i~~~~~~~~~--li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKDV--LGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCCcHHHH
Confidence 44566788774 4568999999975
No 58
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.91 E-value=0.23 Score=33.08 Aligned_cols=24 Identities=46% Similarity=0.618 Sum_probs=18.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
++..++.|.+ ++..+.||||||..
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 4556677776 45679999999965
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=86.89 E-value=0.44 Score=31.17 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=17.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||||||..
T Consensus 53 ~i~~i~~~~~~--l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 53 AIPAILEHRDI--MACAQTGSGKTAA 76 (253)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 34456778774 4568999999964
No 60
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=86.88 E-value=0.44 Score=36.80 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 51 TIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 51 ~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
.+|.- +......++ ++.|.||+.-|.+|+|||.+
T Consensus 76 Hifai-A~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 76 HMYAL-ANDAYRSMRQSQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred hHHHH-HHHHHHHHHhcCCCcEEEecCCCCCCchhh
Confidence 45532 223334443 68999999999999999965
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.87 E-value=0.26 Score=33.96 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHHHHHHHhC-CCCEEEEeeccCCCccceee
Q psy15017 47 DVQTTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 47 ~~q~~v~~~~~~p~v~~~~~-g~n~~v~ayG~t~sGKt~T~ 86 (97)
..+++..+.... .+..++. +...+++-||..|+|||..+
T Consensus 23 ~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 23 PFREDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TTCHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 345555554333 3444443 44557889999999999865
No 62
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.76 E-value=0.31 Score=31.78 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=16.8
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
+++.+.+|.+ ++..|.||||||..
T Consensus 69 ~i~~i~~g~~--~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 69 ILEAISQNSV--VIIRGATGCGKTTQ 92 (235)
T ss_dssp HHHHHHHCSE--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCE--EEEEeCCCCCcHHh
Confidence 4455556664 45689999999953
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.51 E-value=0.54 Score=28.34 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.0
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.|+-+|.+|+|||+..
T Consensus 29 ~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 29 PVFLTGEAGSPFETVA 44 (143)
T ss_dssp CEEEEEETTCCHHHHH
T ss_pred cEEEECCCCccHHHHH
Confidence 3666999999999764
No 64
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=86.49 E-value=0.48 Score=32.79 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 59 SLVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 59 p~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
..+..+++|.+ ++..+.||||||..
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTAT 93 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHH
Confidence 35567788887 45679999999975
No 65
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.38 E-value=0.49 Score=30.40 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=18.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||||||..
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~ 73 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLS 73 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 45567788775 4568999999964
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.16 E-value=0.52 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=17.5
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||+|||..
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~ 67 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAV 67 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhh
Confidence 4456677877 44567999999964
No 67
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=86.15 E-value=0.5 Score=36.95 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=20.6
Q ss_pred HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
....++ ++.|.||+.-|.+|+|||.+
T Consensus 130 Ay~~m~~~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 130 AFRDMKVLKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCCcEEEEcCCCCCCceeh
Confidence 334444 58999999999999999965
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.00 E-value=0.38 Score=33.05 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=16.8
Q ss_pred HHhCCCCEEEEeeccCCCccceee
Q psy15017 63 GSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 63 ~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+-.|.-..++-||..|+|||+++
T Consensus 40 ~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 40 FVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHhcCCCceEEEECCCCCCHHHHH
Confidence 344554323667999999999875
No 69
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=85.93 E-value=0.52 Score=36.81 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=20.8
Q ss_pred HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
....++ ++.|.||+.-|.+|+|||.+
T Consensus 162 Ay~~m~~~~~nQsIiisGESGAGKTe~ 188 (770)
T 1w9i_A 162 AYRSMLDDRQNQSLLITGESGAGKTEN 188 (770)
T ss_dssp HHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhhcCCcEEEEecCCCCcchHH
Confidence 334444 58999999999999999965
No 70
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.52 E-value=0.71 Score=27.79 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=13.9
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
+..|+-+|.+|+|||+..
T Consensus 24 ~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CSCEEEESSTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 334677999999998754
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.37 E-value=0.58 Score=30.83 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=17.7
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||||||..
T Consensus 73 ~i~~i~~~~~~--lv~a~TGsGKT~~ 96 (249)
T 3ber_A 73 AIPLALQGRDI--IGLAETGSGKTGA 96 (249)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEEcCCCCCchhH
Confidence 45567788774 4567999999975
No 72
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.35 E-value=0.71 Score=31.70 Aligned_cols=38 Identities=29% Similarity=0.256 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCC--EEEEeeccCCCccceee
Q psy15017 48 VQTTIYELCAASLVAGSLEGYN--ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 48 ~q~~v~~~~~~p~v~~~~~g~n--~~v~ayG~t~sGKt~T~ 86 (97)
.|+..-.. +..+++.+..|.. -.++-||.+|+|||+..
T Consensus 48 G~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 48 GQLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SCHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 44444432 2234445555554 36778999999999765
No 73
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=85.25 E-value=0.59 Score=36.62 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=20.3
Q ss_pred HHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
...++ ++.|.||+.-|.+|+|||.+
T Consensus 147 y~~m~~~~~nQsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 147 YKQMARDERNQSIIVSGESGAGKTVS 172 (795)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHhHhcCCCeEEEEeCCCCCCcchH
Confidence 33444 58999999999999999965
No 74
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=85.05 E-value=0.61 Score=36.50 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=21.3
Q ss_pred HHHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 59 SLVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 59 p~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
.....++ ++.|.||+.-|.+|+|||.+
T Consensus 160 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 187 (783)
T 4db1_A 160 NAYQYMLTDRENQSILITGESGAGKTVN 187 (783)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHHhhCCCceEEEeCCCCCCCchH
Confidence 3344444 68999999999999999865
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.95 E-value=0.63 Score=30.03 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=17.6
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||||||..
T Consensus 54 ~i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHhCCCCE--EEECCCCCcHHHH
Confidence 34456778774 4568999999975
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.91 E-value=0.36 Score=32.51 Aligned_cols=19 Identities=47% Similarity=0.583 Sum_probs=14.7
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....+.-.|.+|||||.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3445666799999999876
No 77
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=84.82 E-value=0.56 Score=36.93 Aligned_cols=26 Identities=27% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
....++ ++.|.||+.-|.+|+|||.+
T Consensus 159 Ay~~m~~~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 159 AYQNMVTDRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp HHHHHHHHTSEEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCCcEEEEeCCCCCCchhh
Confidence 333444 58999999999999999865
No 78
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=84.67 E-value=0.67 Score=37.56 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.8
Q ss_pred HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
....++ ++.|.||+.-|.+|+|||.+
T Consensus 159 ay~~m~~~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 159 AYRSMLQDREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HHHHHHHHTCCEEEECCCSTTSSTTHH
T ss_pred HHHHHHhcCCCcEEEEecCCCCCccHH
Confidence 334444 68999999999999999965
No 79
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=84.65 E-value=0.62 Score=37.39 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=20.8
Q ss_pred HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
....++ ++.|.||+.-|.+|+|||.+
T Consensus 162 Ay~~m~~~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 162 AYRSMLDDRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HHHHHHHHTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhcCCCeEEEEeCCCCCCcchH
Confidence 334444 68999999999999999965
No 80
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=84.53 E-value=0.65 Score=37.50 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
....++ ++.|.||+.-|.+|||||.+
T Consensus 134 AY~~M~~~~~nQsIiiSGESGAGKTes 160 (1052)
T 4anj_A 134 AFRDMKVLKLSQSIIVSGESGAGKTEN 160 (1052)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCHHHH
Confidence 344444 68999999999999999865
No 81
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=84.49 E-value=1.1 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.2
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....++-||.+|+|||+..
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446788999999999865
No 82
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=84.40 E-value=0.54 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+..++..+.||||||..
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHH
Confidence 45667777444566789999999975
No 83
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.40 E-value=0.78 Score=33.46 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=19.9
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.++.+.+-.++..+.||||||..
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 55667765555677889999999974
No 84
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=84.32 E-value=0.66 Score=37.15 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.8
Q ss_pred HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
....++ ++.|.||+.-|.+|+|||.+
T Consensus 136 Ay~~m~~~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 136 AYRSMLQDREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HHHHHHHHCCCEEEEEECBTTSSHHHH
T ss_pred HHHHHHhcCCCcEEEecCCCCCCchhh
Confidence 333444 68999999999999999865
No 85
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.12 E-value=0.16 Score=35.47 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=15.2
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....++-||.+|+|||+.+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456778999999999764
No 86
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=84.11 E-value=0.68 Score=32.15 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=18.3
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||||||..
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~ 90 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTAT 90 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHH
Confidence 4566778887 45578999999964
No 87
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.06 E-value=0.14 Score=35.03 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=15.9
Q ss_pred CCCEEEEeeccCCCccceee
Q psy15017 67 GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~ 86 (97)
+....++-||..|+|||..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34556788999999999865
No 88
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.04 E-value=0.22 Score=33.41 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=27.5
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHHHH-HhC---CCCEEEEeeccCCCccceee
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLVAG-SLE---GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~-~~~---g~n~~v~ayG~t~sGKt~T~ 86 (97)
...|+.+.+.+..-+.+.+.+..|.... ++. .....++-||.+|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3456665554433344443333333211 122 22446788999999999754
No 89
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.01 E-value=0.62 Score=30.33 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=17.2
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||||||..
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~ 82 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLS 82 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHH
Confidence 34456678764 4567999999976
No 90
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=83.98 E-value=0.62 Score=34.38 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=17.4
Q ss_pred HHHHhCCCCEEEEeeccCCCccceee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++.+.+|...++++ +.||||||.++
T Consensus 191 ~~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 191 VQSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHHhcCCCceEEE-ecCCCChHHHH
Confidence 33444576655555 89999999885
No 91
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.77 E-value=0.72 Score=37.25 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=20.3
Q ss_pred HHHHh-CCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSL-EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~-~g~n~~v~ayG~t~sGKt~T 85 (97)
...++ ++.|.||+.-|.+|+|||.+
T Consensus 147 y~~m~~~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 147 YKQMARDERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCCcEEEEcCCCCCCccch
Confidence 33444 58999999999999999965
No 92
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.71 E-value=5.4 Score=28.13 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=35.3
Q ss_pred eCCCeeeeccEEecCCC--cHHHHHHHHHHHHHHHHh-CCCCEEEEeeccC
Q psy15017 31 LGADKSFTFDYVFDMAD--VQTTIYELCAASLVAGSL-EGYNATILAYGQT 78 (97)
Q Consensus 31 ~~~~~~F~fd~vf~~~~--~q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t 78 (97)
....+.|.|+++++... .+..++++ ....++--+ .+.|+++++-|..
T Consensus 88 ~~~~~~y~FnRiIp~~~~~e~~~l~qE-~q~y~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 88 GLSEHVYKFNRVIPHLKVSEDCFFTQE-YSVYHDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp --CCCEEECSEEEETTTCCHHHHHHHT-THHHHHHHHHTTCCEEEEEEESS
T ss_pred cCCcceEEEeeeechhhcchHHHHHHH-HHHHHHHHHccCCCeeEEEecCC
Confidence 45689999999998876 66666666 455566655 8999999998865
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.48 E-value=0.83 Score=32.93 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCC--EEEEeeccCCCccceee
Q psy15017 47 DVQTTIYELCAASLVAGSLEGYN--ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 47 ~~q~~v~~~~~~p~v~~~~~g~n--~~v~ayG~t~sGKt~T~ 86 (97)
..|+++-+.. ..+++.+..|.. ..++-||.+|+|||+..
T Consensus 40 iG~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 40 VGQENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp ESCHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred cCHHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 3566665442 334555555542 35667999999999753
No 94
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.01 E-value=0.67 Score=31.67 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=18.3
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|....++..+.||||||..
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~ 60 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAA 60 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHH
Confidence 44566777333456679999999974
No 95
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.99 E-value=1.7 Score=29.42 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=18.9
Q ss_pred HHHHHHHHhCC-----CCEEEEeeccCCCcccee
Q psy15017 57 AASLVAGSLEG-----YNATILAYGQTGSGKTYT 85 (97)
Q Consensus 57 ~~p~v~~~~~g-----~n~~v~ayG~t~sGKt~T 85 (97)
....+..++.+ ....++-.|.+|||||..
T Consensus 16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence 33444455433 245677789999999864
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.95 E-value=0.27 Score=33.51 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=26.1
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.|+||.... ...+...+.. +..+++.-- .....++-||.+|+|||+.+
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 456765542 2234444443 222332211 12345777999999999876
No 97
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.94 E-value=0.61 Score=29.29 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-+|..|+|||..+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999764
No 98
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.73 E-value=0.73 Score=34.12 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=15.4
Q ss_pred hCCCCEEEEeeccCCCccceee
Q psy15017 65 LEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 65 ~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
-.|.+ +...|.||||||.+|
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35766 445799999999886
No 99
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=82.67 E-value=0.47 Score=30.34 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=16.8
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
++.+++|.+. +..+.||||||..
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 4456677764 4578999999975
No 100
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=82.60 E-value=0.47 Score=29.84 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=16.5
Q ss_pred HHHhCCCCEEEEeeccCCCccceee
Q psy15017 62 AGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 62 ~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+.+++|.+ ++..+.||+|||...
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34556666 445799999999764
No 101
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=82.52 E-value=0.72 Score=32.25 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=17.6
Q ss_pred HHHHHhCCCCEEEEeeccCCCccce
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~ 84 (97)
.++.+++|.+ ++..+.||||||.
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~ 51 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTT 51 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHH
Confidence 4456678876 4578999999997
No 102
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.03 E-value=0.7 Score=30.92 Aligned_cols=36 Identities=25% Similarity=0.132 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 47 DVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 47 ~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
..|+++.+.. ...+-.|....++-||..|+|||+..
T Consensus 28 ~g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 28 VGQEHIVKRL----KHYVKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CSCHHHHHHH----HHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred hCCHHHHHHH----HHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 3455555442 22233344334788999999999764
No 103
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.82 E-value=1.1 Score=30.66 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred HHHHHhCCC---CEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGY---NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~---n~~v~ayG~t~sGKt~T~ 86 (97)
.+...++|. ..||+-||..|+|||+..
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 456677765 457889999999998753
No 104
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.63 E-value=0.46 Score=32.33 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=17.2
Q ss_pred HHHhCCCCEEEEeeccCCCccceee
Q psy15017 62 AGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 62 ~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
..+..|....++-||..|+|||+.+
T Consensus 51 ~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 51 KTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHhcCCCCEEEEECCCCCCHHHHH
Confidence 3344553333778999999999764
No 105
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.53 E-value=0.96 Score=32.17 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=18.1
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.+..+++|.+ +++.++||||||..
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 4556778877 45678999999974
No 106
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.37 E-value=0.44 Score=32.83 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=26.7
Q ss_pred eccEEecCCCcHHHHHHHHHHHHHH-HHhCCC---CEEEEeeccCCCccceee
Q psy15017 38 TFDYVFDMADVQTTIYELCAASLVA-GSLEGY---NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 38 ~fd~vf~~~~~q~~v~~~~~~p~v~-~~~~g~---n~~v~ayG~t~sGKt~T~ 86 (97)
+|+.+.+.+..-+.+-+.+..|+-. .++.|. ...++-||..|+|||+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4555544443334444444444332 233331 235777999999999865
No 107
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=81.13 E-value=0.61 Score=35.12 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHhCCCCEEEEeeccCCCccceee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
|..++....-+ +-.|..|||||+|+
T Consensus 198 V~~al~~~~~~-lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 198 VLFALSQKELA-IIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHCSSEE-EEECCTTSCHHHHH
T ss_pred HHHHhcCCCce-EEECCCCCCHHHHH
Confidence 34444333333 45699999999997
No 108
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=80.97 E-value=0.75 Score=32.52 Aligned_cols=26 Identities=38% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHhCCCCEEEEeeccCCCccceee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+..+.-.....+.-.|.+|||||.+|
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 34443334456667899999999876
No 109
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.88 E-value=0.7 Score=29.65 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHHhCC---CCEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLEG---YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++.| ....+.-+|.+|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 456777753 2445667899999999876
No 110
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.84 E-value=0.35 Score=32.31 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=13.4
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
++-||.+|+|||+.+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 778999999999875
No 111
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.83 E-value=0.51 Score=30.75 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=14.8
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...++-||.+|+|||+..
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446788999999999865
No 112
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=80.80 E-value=0.83 Score=31.53 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=17.3
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+ ++..+.||||||..
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~ 74 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAA 74 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHH
Confidence 3455667776 45678999999964
No 113
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=80.75 E-value=1.1 Score=34.17 Aligned_cols=40 Identities=30% Similarity=0.246 Sum_probs=28.1
Q ss_pred ecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017 43 FDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 43 f~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~ 87 (97)
|.+..+|..-++. +++.+-.|.... .-.|.+|||||++|-
T Consensus 7 ~~~~~~q~~ai~~----l~~~~~~~~~~~-~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 7 PSPKGDQPKAIAG----LVEALRDGERFV-TLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSEE-EEEECTTSCHHHHHH
T ss_pred CCCCCCChHHHHH----HHHHHhcCCCcE-EEEcCCCcHHHHHHH
Confidence 3677788877766 455566665433 346999999999984
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=80.54 E-value=1.1 Score=32.18 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 46 ADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 46 ~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+..|.+....+. ..+.++.. .++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~~~-~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEKKH-HVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSSSC-EEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcCCC-EEEEEeCCCCCHHHHH
Confidence 457877776643 33444443 6778899999999875
No 115
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.24 E-value=1.1 Score=29.62 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhCC-CCEEEEeeccCCCcccee
Q psy15017 50 TTIYELCAASLVAGSLEG-YNATILAYGQTGSGKTYT 85 (97)
Q Consensus 50 ~~v~~~~~~p~v~~~~~g-~n~~v~ayG~t~sGKt~T 85 (97)
+.+++.+...++...... ....++-.|.+|||||..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 444555444333332222 235677789999999864
No 116
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=80.13 E-value=0.95 Score=29.71 Aligned_cols=23 Identities=30% Similarity=0.065 Sum_probs=16.2
Q ss_pred HHHhCCCCEEEEeeccCCCccceee
Q psy15017 62 AGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 62 ~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+.++++.+ ++..|.+|+|||+..
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHH
Confidence 34556655 455689999999864
No 117
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.08 E-value=1 Score=30.62 Aligned_cols=45 Identities=20% Similarity=0.388 Sum_probs=26.1
Q ss_pred CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
...+.|+.+.+ ++.+... +...++......++-||.+|+|||+..
T Consensus 18 ~~~~~f~~i~G----~~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 18 RPVFPFSAIVG----QEDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCCGGGSCS----CHHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCCchhccC----hHHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 45567776654 3333332 122233333334778999999999864
No 118
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.95 E-value=1.4 Score=32.46 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=19.1
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.++.+.+-.++..+.||||||..
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 45566755555677889999999974
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.89 E-value=0.4 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=15.0
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...++-||.+|+|||+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345778999999999976
No 120
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.89 E-value=1.2 Score=30.83 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=17.7
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||||||..
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAA 68 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHH
Confidence 34566788775 4578999999964
No 121
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=79.78 E-value=1.3 Score=29.62 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=16.9
Q ss_pred HHHHhCCCCEEEEeeccCCCccceee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++.+++|.+. +..+.||+|||...
T Consensus 25 i~~i~~~~~~--lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKNV--VVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHhcCCCE--EEEcCCCCcHHHHH
Confidence 3456677764 45689999999643
No 122
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=79.78 E-value=1.5 Score=32.91 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=18.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
+|+.+++|.+ +++...||+|||..
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 4566778887 45678999999964
No 123
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=79.51 E-value=0.67 Score=33.33 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=18.3
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
+..+++|.+. ++..+.||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4567788775 45669999999975
No 124
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.22 E-value=0.57 Score=31.26 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=15.8
Q ss_pred CCCCEEEEeeccCCCccceee
Q psy15017 66 EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+....++-||..|+|||+..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 454334788999999999764
No 125
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.17 E-value=0.17 Score=34.21 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=12.9
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-||.+|+|||..+
T Consensus 47 vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEESSTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 777999999999764
No 126
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=78.76 E-value=0.45 Score=31.72 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=13.9
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-||.+|+|||+..
T Consensus 51 ~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45677899999999764
No 127
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.34 E-value=1.3 Score=30.68 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=18.8
Q ss_pred HHHhCC---CCEEEEe--eccCCCccceee
Q psy15017 62 AGSLEG---YNATILA--YGQTGSGKTYTM 86 (97)
Q Consensus 62 ~~~~~g---~n~~v~a--yG~t~sGKt~T~ 86 (97)
..+..| ....++- ||..|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 445555 5567888 999999999765
No 128
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.18 E-value=2 Score=31.08 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=18.3
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++..+.......++-+|.+|+|||+..
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 333443444455677999999999765
No 129
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=78.13 E-value=0.95 Score=30.78 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=13.0
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.++-||..|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3566999999999765
No 130
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.03 E-value=1.4 Score=33.54 Aligned_cols=47 Identities=32% Similarity=0.429 Sum_probs=34.0
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~ 87 (97)
.|....-|.+...|..-++. +++.+-.|.... .-.|.+|||||++|-
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~~-~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKHQ-TLLGATGTGKTFTVS 50 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSEE-EEEECTTSCHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCcE-EEECcCCcHHHHHHH
Confidence 46666668888899888776 355666665332 346999999999984
No 131
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.79 E-value=0.72 Score=30.22 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=14.4
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...++-||.+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 335788999999999764
No 132
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.72 E-value=1.7 Score=27.58 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=17.6
Q ss_pred HHHHHHhC--CCCEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE--GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~--g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+++.+.+ .....+.-.|.+|||||..+
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 34444442 33445556699999999754
No 133
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=77.33 E-value=1.5 Score=29.60 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
++.+++|.. .++..+.||||||..
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~ 60 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTAS 60 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHH
Confidence 445566643 345679999999976
No 134
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=77.28 E-value=1.6 Score=29.82 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=17.7
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||+|||..
T Consensus 38 ~i~~~~~~~~~--lv~a~TGsGKT~~ 61 (391)
T 1xti_A 38 CIPQAILGMDV--LCQAKSGMGKTAV 61 (391)
T ss_dssp HHHHHTTTCCE--EEECSSCSSHHHH
T ss_pred HHHHHhcCCcE--EEECCCCCcHHHH
Confidence 45567778774 4568999999975
No 135
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=77.15 E-value=0.89 Score=30.40 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-+|.+|+|||+..
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 56788999999999764
No 136
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.12 E-value=0.75 Score=30.51 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.8
Q ss_pred EEEEeeccCCCcccee
Q psy15017 70 ATILAYGQTGSGKTYT 85 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T 85 (97)
.+++-||..|+|||+.
T Consensus 59 n~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 59 NCLVFCGPANTGKSYF 74 (212)
T ss_dssp SEEEEESCGGGCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688899999999975
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=76.86 E-value=0.73 Score=28.59 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|||||..+
T Consensus 11 i~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455799999999765
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.85 E-value=1.9 Score=29.31 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHh--CCCCEEEEeeccCCCccceee
Q psy15017 48 VQTTIYELCAASLVAGSL--EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 48 ~q~~v~~~~~~p~v~~~~--~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++.+.... ...+.... ......++-+|.+|+|||+..
T Consensus 33 G~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 33 GQESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SCHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred ChHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 455555442 23344433 233445788999999999764
No 139
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.67 E-value=1.7 Score=31.29 Aligned_cols=24 Identities=46% Similarity=0.688 Sum_probs=17.7
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +....||||||..
T Consensus 15 ~i~~~~~~~~~--l~~~~tGsGKT~~ 38 (556)
T 4a2p_A 15 LAQPAINGKNA--LICAPTGSGKTFV 38 (556)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHHcCCCE--EEEcCCCChHHHH
Confidence 44566778774 4568999999965
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=76.31 E-value=1 Score=28.43 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=18.2
Q ss_pred HHHHHHhC-CC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE-GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~-g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+.++.++. |. ...+.-+|.+|+|||..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34555654 32 334556899999999764
No 141
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.12 E-value=1.5 Score=27.73 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=19.2
Q ss_pred HHHHHHhC-CC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE-GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~-g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+.++.++. |. ...+.-.|.+|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45666664 32 345566799999999775
No 142
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=75.81 E-value=1.4 Score=32.10 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
++.+++|.+..++..+.||||||..
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 3556777333456679999999986
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.62 E-value=1.2 Score=29.76 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=16.2
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+-.+....++-||..|+|||+..
T Consensus 37 l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 37 AKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HHSCCCCCEEEECSTTSSHHHHH
T ss_pred HHcCCCCeEEEECcCCCCHHHHH
Confidence 33444333778999999999764
No 144
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=75.41 E-value=1.3 Score=28.74 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=16.6
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++++-.|.-.+ -.|.+|||||..+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 344454555433 4799999999765
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=75.03 E-value=0.65 Score=32.00 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=12.9
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.++-||.+|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3556999999999865
No 146
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=74.75 E-value=0.79 Score=34.05 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.2
Q ss_pred CEEEEeeccCCCccceeec
Q psy15017 69 NATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~ 87 (97)
+..++..|..|||||.|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 4456778999999999973
No 147
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=74.71 E-value=1.9 Score=32.17 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=16.9
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
++.+++|.|. +..+.||+|||..
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHH
Confidence 4456778774 4578999999963
No 148
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=74.36 E-value=4 Score=25.73 Aligned_cols=28 Identities=25% Similarity=0.102 Sum_probs=18.3
Q ss_pred HHHHHHhC---CCCEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE---GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~---g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+++.+.+ .....+.-.|.+|||||..+
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 34445443 33456667799999998754
No 149
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.34 E-value=0.59 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=12.9
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.++..|.+|||||.++
T Consensus 37 ~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTA 52 (392)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3456899999999876
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.14 E-value=0.88 Score=31.06 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=13.3
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
++-+|.+|+|||+.+
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 777999999999876
No 151
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=73.82 E-value=2.2 Score=30.54 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=17.5
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.++ +....||||||..
T Consensus 12 ~i~~~~~~~~~--l~~~~tGsGKT~~ 35 (555)
T 3tbk_A 12 LALPAKKGKNT--IICAPTGCGKTFV 35 (555)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCChHHHH
Confidence 34456788774 4568999999965
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=73.81 E-value=1.6 Score=31.68 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=25.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 44 DMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 44 ~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++-..|+.+... ...+...+-.|.-..++-||.+|+|||+..
T Consensus 26 ~~ivGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 26 AQYIGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTCCSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHhCCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 334466666531 122333344455567888999999999754
No 153
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.70 E-value=1.6 Score=32.04 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=15.6
Q ss_pred CCCEEEEeeccCCCccceee
Q psy15017 67 GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~ 86 (97)
.....++-||.+|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34456888999999999764
No 154
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=73.31 E-value=2 Score=32.07 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++.+++|.+. +..+.||+|||...
T Consensus 15 ~i~~il~g~~~--ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKNI--IICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCCE--EECCCTTSCHHHHH
T ss_pred HHHHHHhCCCE--EEEcCCCCcHHHHH
Confidence 44566778774 45799999999653
No 155
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.17 E-value=2.8 Score=31.97 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+++.+.......++-+|.+|+|||+.+
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 444444445556777999999999865
No 156
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.11 E-value=1.1 Score=30.51 Aligned_cols=17 Identities=47% Similarity=0.907 Sum_probs=14.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-||..|+|||+..
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45788999999999764
No 157
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=72.82 E-value=2.4 Score=26.58 Aligned_cols=28 Identities=29% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHhC-CC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE-GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~-g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++. |. ...+.-+|.+|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45666765 33 346677899999999654
No 158
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=72.60 E-value=2.1 Score=28.85 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCC-CEEEEeeccCCCccceee
Q psy15017 66 EGY-NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 66 ~g~-n~~v~ayG~t~sGKt~T~ 86 (97)
.|. ...++-+|.+|+|||+.+
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHH
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 444 345777899999999875
No 159
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=72.44 E-value=1.2 Score=30.41 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=17.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+. +..+.||+|||..
T Consensus 51 ~i~~i~~~~~~--lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHDV--LAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCCE--EECCCSSHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 34556677764 4568999999976
No 160
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.21 E-value=1.7 Score=29.60 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=14.7
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
.+..|+-+|.+|+|||+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3445777999999998754
No 161
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=71.81 E-value=0.88 Score=34.22 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=13.9
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++..|.+|||||+|+
T Consensus 165 ~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 165 RISVISGGPGTGKTTTV 181 (608)
T ss_dssp SEEEEECCTTSTHHHHH
T ss_pred CCEEEEeCCCCCHHHHH
Confidence 35667899999999886
No 162
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.41 E-value=4 Score=31.22 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=18.5
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++..+.......++-||.+|+|||...
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 344444455555777999999999754
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=71.20 E-value=3 Score=29.16 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-||.+|+|||+..
T Consensus 149 ~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46788999999999764
No 164
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=71.08 E-value=1 Score=33.97 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.7
Q ss_pred CEEEEeeccCCCccceeec
Q psy15017 69 NATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~ 87 (97)
+..++..|..|||||+||.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp SSEEEECCCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHH
Confidence 4567778999999999984
No 165
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=71.04 E-value=1.4 Score=29.28 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=14.2
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++++.++ ++ .+.||+|||...
T Consensus 125 ~l~~~~~-ll-~~~tGsGKT~~~ 145 (282)
T 1rif_A 125 GLVNRRR-IL-NLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHSEE-EE-CCCTTSCHHHHH
T ss_pred HHhcCCe-EE-EcCCCCCcHHHH
Confidence 4444443 33 799999999764
No 166
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=70.90 E-value=0.91 Score=32.24 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=14.5
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 345667899999999875
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=70.49 E-value=2.1 Score=29.18 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.1
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-+|..|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999765
No 168
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=70.45 E-value=1.2 Score=32.20 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=19.2
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+++|.+..|.-.|.+|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 67888888888899999999765
No 169
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=70.36 E-value=1.1 Score=30.58 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=16.0
Q ss_pred HHhCCCCEEEEeeccCCCccceee
Q psy15017 63 GSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 63 ~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++++.+..|...|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367888888988999999999765
No 170
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=70.33 E-value=1.2 Score=30.60 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35555699999999876
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=70.03 E-value=2.8 Score=26.34 Aligned_cols=19 Identities=32% Similarity=0.400 Sum_probs=14.2
Q ss_pred CCCEEEEeeccCCCcccee
Q psy15017 67 GYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T 85 (97)
.....+.-.|.+|||||..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455666779999999864
No 172
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.98 E-value=2.4 Score=29.37 Aligned_cols=19 Identities=47% Similarity=0.632 Sum_probs=14.2
Q ss_pred CCCCEEEEeeccCCCccceee
Q psy15017 66 EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.|.+. .--|.+|||||.++
T Consensus 170 ~g~~v--~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNV--IVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCE--EEEESTTSCHHHHH
T ss_pred CCCEE--EEECCCCCCHHHHH
Confidence 56654 34699999999876
No 173
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=69.91 E-value=4.3 Score=28.18 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=13.9
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...+.-.|.+|+|||.++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345555699999999875
No 174
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=69.66 E-value=1.4 Score=28.17 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=12.6
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|||||..+
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4555699999998765
No 175
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.44 E-value=3.3 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHhC-CCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLE-GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~-g~n~~v~ayG~t~sGKt~T~ 86 (97)
+.+.++. .....|...|..|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444555 55667888999999998654
No 176
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=68.77 E-value=2 Score=32.24 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.3
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
..+..|..|+|||+|+
T Consensus 197 ~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTS 212 (624)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred CeEEECCCCCCHHHHH
Confidence 3456899999999986
No 177
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=68.46 E-value=1.8 Score=31.74 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=17.2
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.+++|.+.. ....||+|||..
T Consensus 33 ~i~~il~g~d~l--v~apTGsGKTl~ 56 (523)
T 1oyw_A 33 IIDTVLSGRDCL--VVMPTGGGKSLC 56 (523)
T ss_dssp HHHHHHTTCCEE--EECSCHHHHHHH
T ss_pred HHHHHHcCCCEE--EECCCCcHHHHH
Confidence 345567787654 467999999963
No 178
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=68.43 E-value=2.9 Score=32.61 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 45 MADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 45 ~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
...-|.+++..+ ..++..+....++..|.||||||..
T Consensus 369 lt~~Q~~ai~~I----~~~l~~~~~~~~Ll~a~TGSGKTlv 405 (780)
T 1gm5_A 369 LTNAQKRAHQEI----RNDMISEKPMNRLLQGDVGSGKTVV 405 (780)
T ss_dssp CCHHHHHHHHHH----HHHHHSSSCCCCEEECCSSSSHHHH
T ss_pred CCHHHHHHHHHH----HhhccccCCCcEEEEcCCCCCHHHH
Confidence 344566665553 3344455545566789999999964
No 179
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.36 E-value=1.2 Score=29.86 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.4
Q ss_pred EEEEeeccCCCccceeec
Q psy15017 70 ATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~~ 87 (97)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 468889999999999963
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=68.35 E-value=3 Score=26.61 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=17.6
Q ss_pred HHHHhCC-C--CEEEEeeccCCCccceee
Q psy15017 61 VAGSLEG-Y--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~g-~--n~~v~ayG~t~sGKt~T~ 86 (97)
++.++.| . ...+.-+|.+|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4556543 2 345667899999999763
No 181
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=68.29 E-value=3.2 Score=33.11 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHhCCCCEEEEeeccCCCccce
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~ 84 (97)
+..+++|.+ ++..+.||||||.
T Consensus 48 I~~il~g~~--vlv~apTGsGKTl 69 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTV 69 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHH
Confidence 445667764 6678999999995
No 182
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=68.05 E-value=3.1 Score=29.58 Aligned_cols=23 Identities=30% Similarity=0.065 Sum_probs=16.0
Q ss_pred HHHhCCCCEEEEeeccCCCccceee
Q psy15017 62 AGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 62 ~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+.++++.+ ++..+.||+|||...
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 44566654 445689999999764
No 183
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=68.02 E-value=1.6 Score=26.89 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=12.2
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|+-.|.+|||||+-
T Consensus 13 ~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 13 NILLTGTPGVGKTTL 27 (180)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEEeCCCCCHHHH
Confidence 466789999999864
No 184
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.96 E-value=2.4 Score=30.80 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=26.1
Q ss_pred ccEEecCCCcHHHHHHHHHHHHHHH-HhC--CC--CEEEEeeccCCCcccee
Q psy15017 39 FDYVFDMADVQTTIYELCAASLVAG-SLE--GY--NATILAYGQTGSGKTYT 85 (97)
Q Consensus 39 fd~vf~~~~~q~~v~~~~~~p~v~~-~~~--g~--n~~v~ayG~t~sGKt~T 85 (97)
|+.|-+.+.--+++-+.+..|+... ++. |. .-.++=||..|+|||..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHH
Confidence 3333333333455555556665422 332 22 33567799999999865
No 185
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.92 E-value=3 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=15.8
Q ss_pred HHhCCCCEEEEeeccCCCccceee
Q psy15017 63 GSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 63 ~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+..|. .|+-||.+|+|||+..
T Consensus 37 al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 37 AALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHhcCC--eeEeecCchHHHHHHH
Confidence 344454 4566999999999764
No 186
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=67.62 E-value=3.2 Score=33.27 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHHHhCCCCEEEEeeccCCCccce
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~ 84 (97)
.++.+++|.+ ++..+.||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4556778876 4567999999994
No 187
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.57 E-value=1.8 Score=29.72 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|+|||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34555699999999876
No 188
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=67.43 E-value=1.4 Score=28.35 Aligned_cols=16 Identities=50% Similarity=0.630 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4445799999999766
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.34 E-value=1.4 Score=27.54 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.6
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..+
T Consensus 10 i~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 10 FIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 344699999998764
No 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=66.74 E-value=1.2 Score=32.15 Aligned_cols=17 Identities=41% Similarity=0.821 Sum_probs=14.0
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-||..|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45777999999999864
No 191
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.47 E-value=3.6 Score=27.49 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=14.6
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....++-+|.+|+|||+..
T Consensus 37 ~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCCEEECCTTCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3345677999999999764
No 192
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.43 E-value=2.5 Score=26.05 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|||||..+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35666799999999765
No 193
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.96 E-value=3.4 Score=28.88 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=15.1
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+-.|.+..| -|.+|||||.++
T Consensus 172 i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEE--EESSSSCHHHHH
T ss_pred HhcCCEEEE--ECCCCCCHHHHH
Confidence 335665443 599999999876
No 194
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=65.93 E-value=1.8 Score=30.10 Aligned_cols=18 Identities=50% Similarity=0.689 Sum_probs=14.2
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...++-||.+|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 345777999999999764
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=65.43 E-value=1.6 Score=27.72 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=11.6
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..+
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334699999999765
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.21 E-value=2.4 Score=32.98 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=18.6
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+++.+..+....++-+|..|+|||+.+
T Consensus 182 l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred HHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 444444554445667999999999865
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=64.71 E-value=1.6 Score=29.80 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=13.0
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|+|||.|+
T Consensus 107 vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTL 122 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999886
No 198
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=64.68 E-value=2.6 Score=28.06 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=16.4
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+..|+...|...|.+|+|||..+
T Consensus 3 ~~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 3 LGSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ----CEEEEEEEECTTSSHHHHH
T ss_pred CcCccEEEEEEECCCCCCHHHHH
Confidence 34677888999999999998654
No 199
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=64.01 E-value=7.7 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.4
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
++......|...|..++|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 56666778888999999998644
No 200
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=63.73 E-value=4.5 Score=31.10 Aligned_cols=24 Identities=46% Similarity=0.688 Sum_probs=17.9
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.++.|.+. +..+.||||||..
T Consensus 256 ~i~~~l~~~~~--ll~~~TGsGKTl~ 279 (797)
T 4a2q_A 256 LAQPAINGKNA--LICAPTGSGKTFV 279 (797)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHHhCCCE--EEEeCCCChHHHH
Confidence 45566788774 4578999999965
No 201
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=63.60 E-value=2.1 Score=29.81 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=27.2
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHHH-HHhCCC---CEEEEeeccCCCccceee
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLVA-GSLEGY---NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~-~~~~g~---n~~v~ayG~t~sGKt~T~ 86 (97)
..+|+.+.+.+..-+.+.+.+..|+-. .++.+. ...++-||..|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 445665554444344444444333222 123221 224667899999999764
No 202
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=63.50 E-value=2.7 Score=25.78 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=11.6
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|+-.|.+|||||.
T Consensus 7 ~i~l~G~~GsGKst 20 (185)
T 3trf_A 7 NIYLIGLMGAGKTS 20 (185)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46668999999985
No 203
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.48 E-value=2.7 Score=25.81 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=11.6
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
...-+|.+|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 344679999999864
No 204
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=63.43 E-value=1.8 Score=26.84 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=11.6
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..+
T Consensus 8 i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998754
No 205
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.21 E-value=3.3 Score=25.14 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=11.0
Q ss_pred EEeeccCCCcccee
Q psy15017 72 ILAYGQTGSGKTYT 85 (97)
Q Consensus 72 v~ayG~t~sGKt~T 85 (97)
..-+|.+|||||--
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 34689999999754
No 206
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=62.80 E-value=7.2 Score=31.62 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
..++-+|....++..|.||+|||..
T Consensus 616 l~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 616 LSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHhcCCcCcEEEECCCCCCHHHH
Confidence 3344457755677889999999954
No 207
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=62.79 E-value=2.8 Score=30.14 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=11.9
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
++..+.||+|||...
T Consensus 131 ~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 131 RILNLPTSAGRSLIQ 145 (510)
T ss_dssp EEEECCSTTTHHHHH
T ss_pred cEEEeCCCCCHHHHH
Confidence 345799999999764
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=62.76 E-value=3.4 Score=25.51 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=13.1
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
...|.-.|..|||||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 44566779999999864
No 209
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=62.40 E-value=3.2 Score=31.06 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=13.7
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++..|..|+|||+++
T Consensus 205 ~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 34556799999999886
No 210
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.23 E-value=2.6 Score=29.81 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=13.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35556699999999876
No 211
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=61.99 E-value=2.3 Score=29.39 Aligned_cols=17 Identities=53% Similarity=0.700 Sum_probs=13.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-+|.+|+|||+..
T Consensus 52 ~~vll~GppGtGKT~la 68 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45667999999999753
No 212
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=61.92 E-value=3.2 Score=32.34 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.5
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
..+..|..|||||+|+
T Consensus 377 ~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTS 392 (802)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3567899999999986
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=61.87 E-value=3 Score=26.19 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=12.1
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|+-.|.+|||||..
T Consensus 27 ~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTL 41 (199)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 566689999999854
No 214
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=61.82 E-value=2.9 Score=31.57 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=14.7
Q ss_pred HhCCCCEEEEeeccCCCcccee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T 85 (97)
+++|.|. +..+.||||||..
T Consensus 37 i~~~~~~--lv~apTGsGKT~~ 56 (702)
T 2p6r_A 37 VFSGKNL--LLAMPTAAGKTLL 56 (702)
T ss_dssp HTTCSCE--EEECSSHHHHHHH
T ss_pred HhCCCcE--EEEcCCccHHHHH
Confidence 4566654 5579999999964
No 215
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=61.77 E-value=1.6 Score=35.41 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.6
Q ss_pred CEEEEeeccCCCccceeec
Q psy15017 69 NATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~ 87 (97)
+..++.-|..|||||++|.
T Consensus 23 ~~~~~v~a~AGSGKT~vl~ 41 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLV 41 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHH
Confidence 5567778999999999973
No 216
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=61.42 E-value=6.5 Score=27.18 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHhC-CC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE-GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~-g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++. |. ...+.-+|.+|+|||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 56778885 33 456778999999998764
No 217
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.30 E-value=5.2 Score=29.24 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-||..|+|||+..
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46777999999999864
No 218
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=61.15 E-value=1.7 Score=33.19 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.0
Q ss_pred CEEEEeeccCCCccceeec
Q psy15017 69 NATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~ 87 (97)
+..++..|..|||||++|.
T Consensus 24 ~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHH
Confidence 3456678999999999873
No 219
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.09 E-value=3.7 Score=25.19 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=12.8
Q ss_pred EEEEeeccCCCcccee
Q psy15017 70 ATILAYGQTGSGKTYT 85 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T 85 (97)
..|+-.|..|||||..
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4567789999999863
No 220
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.02 E-value=6.7 Score=27.27 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=20.4
Q ss_pred HHHHHHhCC---CCEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLEG---YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++.| ....+.-+|.+|||||.-+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 567777754 2456677899999998654
No 221
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.59 E-value=2 Score=32.52 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.1
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-++..|.||||||..|
T Consensus 216 HlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred eeEEECCCCCCHHHHH
Confidence 4567899999998765
No 222
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=60.54 E-value=4.8 Score=32.55 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=17.4
Q ss_pred HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.++.|.+ ++..+.||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 3445677766 45689999999954
No 223
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=60.35 E-value=4.4 Score=28.00 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++.++++ + ++....||+|||...
T Consensus 17 ~i~~~~~~-~--~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 17 IYAKCKET-N--CLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHHGGGS-C--EEEECCTTSCHHHHH
T ss_pred HHHHHhhC-C--EEEEcCCCCCHHHHH
Confidence 44566777 3 344689999999764
No 224
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=60.25 E-value=5 Score=32.45 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHhCCCCEEEEeeccCCCccce
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~ 84 (97)
.++.+++|.+ ++..+.||||||.
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl 108 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTT 108 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHH
Confidence 4566778876 4568899999997
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=60.20 E-value=9.5 Score=27.67 Aligned_cols=17 Identities=47% Similarity=0.544 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+..-|.+|+|||.|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45555599999999885
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=60.10 E-value=5.4 Score=29.67 Aligned_cols=17 Identities=47% Similarity=0.599 Sum_probs=13.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35556699999999876
No 227
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=59.99 E-value=2.8 Score=26.91 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=7.9
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..+
T Consensus 30 i~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEECSCC----CHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999875
No 228
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=59.86 E-value=4.4 Score=25.06 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=14.2
Q ss_pred CCCEEEEeeccCCCcccee
Q psy15017 67 GYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T 85 (97)
+....|.-.|..|||||..
T Consensus 6 ~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp CCCEEEEEEECTTSCHHHH
T ss_pred cCceEEEEECCCCCCHHHH
Confidence 4445677779999999853
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.78 E-value=3.1 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.0
Q ss_pred EEeeccCCCcccee
Q psy15017 72 ILAYGQTGSGKTYT 85 (97)
Q Consensus 72 v~ayG~t~sGKt~T 85 (97)
++-.|.+|||||.-
T Consensus 15 i~l~G~sGsGKsTl 28 (204)
T 2qor_A 15 LVVCGPSGVGKGTL 28 (204)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45579999999853
No 230
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=59.44 E-value=11 Score=26.70 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=16.9
Q ss_pred CCCCEEEEeeccCCCccceee
Q psy15017 66 EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.|.-..++-.|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 576667888999999998653
No 231
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=59.43 E-value=3.5 Score=25.60 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=12.2
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455699999998654
No 232
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=59.14 E-value=3.9 Score=31.89 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.4
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
..+..|..|+|||+|+
T Consensus 373 ~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTS 388 (800)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4456899999999986
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=59.14 E-value=11 Score=27.47 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=14.8
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...|...|.+|+|||.|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 456777799999999886
No 234
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=59.08 E-value=7.5 Score=26.32 Aligned_cols=29 Identities=34% Similarity=0.359 Sum_probs=21.5
Q ss_pred HHHHHHHhCC-C--CEEEEeeccCCCccceee
Q psy15017 58 ASLVAGSLEG-Y--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 58 ~p~v~~~~~g-~--n~~v~ayG~t~sGKt~T~ 86 (97)
.+-++.++.| . ...+.-+|.+|+|||.-+
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 3667788853 2 456788999999998654
No 235
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=58.98 E-value=6 Score=31.20 Aligned_cols=25 Identities=44% Similarity=0.642 Sum_probs=18.3
Q ss_pred HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++.+++|.+. +..+.||||||.+.
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHH
Confidence 44566788774 45689999999763
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.96 E-value=7.1 Score=29.85 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.++-+|.+|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788999999999764
No 237
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=58.60 E-value=3.8 Score=24.93 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=12.5
Q ss_pred EEEEeeccCCCcccee
Q psy15017 70 ATILAYGQTGSGKTYT 85 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T 85 (97)
..+.-.|.+|||||..
T Consensus 9 ~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAV 24 (175)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 3566679999999864
No 238
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=58.07 E-value=10 Score=25.76 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=14.2
Q ss_pred CCCEEEEeeccCCCccceee
Q psy15017 67 GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~ 86 (97)
+....|.--|.+|||||...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34445556699999998653
No 239
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=57.93 E-value=4.9 Score=30.32 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=14.7
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+.+|.| ++..+.||||||...
T Consensus 43 ~~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 43 LLEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTTCC--EEEECCTTSCHHHHH
T ss_pred hcCCCc--EEEEcCCCCcHHHHH
Confidence 345554 456799999999653
No 240
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=57.92 E-value=2.3 Score=27.36 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=10.8
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..+
T Consensus 28 lvGpsGsGKSTLl 40 (218)
T 1z6g_A 28 ICGPSGVGKGTLI 40 (218)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999765
No 241
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=57.89 E-value=4.3 Score=29.19 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHhCCCCEEEEeeccCCCcccee
Q psy15017 63 GSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 63 ~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.... .++..+.||||||..
T Consensus 16 ~~l~~~~-~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 16 NMLRKRQ-MTVLDLHPGSGKTRK 37 (459)
T ss_dssp GGGSTTC-EEEECCCTTSCTTTT
T ss_pred HHHhcCC-cEEEECCCCCCHHHH
Confidence 3444333 345679999999976
No 242
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=57.41 E-value=4.7 Score=31.23 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=15.0
Q ss_pred HHHHhCCCCEEEEeeccCCCccce
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~ 84 (97)
+..++.+.. .++..|.||||||.
T Consensus 102 i~~~l~~~~-~vii~gpTGSGKTt 124 (773)
T 2xau_A 102 FLKLYQNNQ-IMVFVGETGSGKTT 124 (773)
T ss_dssp HHHHHHHCS-EEEEECCTTSSHHH
T ss_pred HHHHHhCCC-eEEEECCCCCCHHH
Confidence 334444333 34567999999997
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=57.33 E-value=3.8 Score=28.20 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=13.6
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|+|||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 45666699999999876
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=57.28 E-value=2.5 Score=31.24 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.6
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.++-||.+|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3778999999999865
No 245
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=57.04 E-value=2.7 Score=28.21 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++.+|..|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47888999999999765
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=56.93 E-value=2.6 Score=27.73 Aligned_cols=20 Identities=20% Similarity=0.046 Sum_probs=15.4
Q ss_pred CEEEEeeccCCCccceeecC
Q psy15017 69 NATILAYGQTGSGKTYTMGT 88 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~~G 88 (97)
...++-+|..|+|||..+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 45677789999999976643
No 247
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=56.59 E-value=4.9 Score=32.18 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=15.4
Q ss_pred HHhCCCCEEEEeeccCCCcccee
Q psy15017 63 GSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 63 ~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.++.|.+ ++..+.||||||..
T Consensus 97 ~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 97 CIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHcCCC--EEEECCCCCChHHH
Confidence 3455654 56789999999964
No 248
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.30 E-value=3.4 Score=25.51 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=12.4
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|+|||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4445699999999755
No 249
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=55.98 E-value=7.6 Score=25.91 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++.+|..|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 46778999999999754
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=55.72 E-value=12 Score=29.09 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-+|.+|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57888999999998753
No 251
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=55.48 E-value=4.9 Score=24.42 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=8.3
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|+-.|..|||||.-
T Consensus 7 ~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 7 IIWINGPFGVGKTHT 21 (183)
T ss_dssp EEEEECCC----CHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567789999999853
No 252
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=55.47 E-value=5.7 Score=24.04 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHhC-CCCEEEEeeccCCCccceee
Q psy15017 62 AGSLE-GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 62 ~~~~~-g~n~~v~ayG~t~sGKt~T~ 86 (97)
..++. .....|...|..++|||.-+
T Consensus 10 ~~~~~~~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 10 KKMKQKERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -------CCEEEEEECSTTSSHHHHH
T ss_pred HhhcccCCeeEEEEECCCCCCHHHHH
Confidence 33443 44566778899999998655
No 253
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=55.45 E-value=3.8 Score=31.41 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=14.5
Q ss_pred HhCCCCEEEEeeccCCCccce
Q psy15017 64 SLEGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~ 84 (97)
.++|. .++..|.||||||+
T Consensus 152 ~l~rk--~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTY 170 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHH
T ss_pred hcCCC--EEEEEcCCCCCHHH
Confidence 34554 56778999999997
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=55.08 E-value=7.6 Score=26.50 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=20.5
Q ss_pred HHHHHHhCC-C--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLEG-Y--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~g-~--n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++.| . ...+.-+|.+|+|||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 667778753 2 446777999999998654
No 255
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=54.93 E-value=3.5 Score=31.21 Aligned_cols=20 Identities=50% Similarity=0.448 Sum_probs=14.4
Q ss_pred HhCCCCEEEEeeccCCCcccee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T 85 (97)
+.+|.| ++..+.||||||..
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~ 55 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLI 55 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHH
Confidence 345544 56789999999954
No 256
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=54.85 E-value=2.8 Score=31.16 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.1
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
++..|.||||||..+
T Consensus 170 lLIaG~TGSGKSt~L 184 (512)
T 2ius_A 170 LLVAGTTGSGASVGV 184 (512)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 466899999999754
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=54.85 E-value=4.6 Score=26.20 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667799999998654
No 258
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=54.63 E-value=4.8 Score=28.81 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=14.8
Q ss_pred HhCCCCEEEEeeccCCCcccee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T 85 (97)
+++|.+ ++..+.||||||..
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~ 24 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRR 24 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTT
T ss_pred hhCCCC--EEEEcCCCCCHHHH
Confidence 345665 44679999999976
No 259
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=54.41 E-value=9 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=18.2
Q ss_pred HHHHH-hCCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGS-LEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~-~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
+++.+ +.-...-|...|..|+|||.-+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 34444 4444556778899999998654
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=53.84 E-value=3.4 Score=27.15 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 35 ~iiG~nGsGKSTLl 48 (235)
T 3tif_A 35 SIMGPSGSGKSTML 48 (235)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 44699999999665
No 261
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.72 E-value=4.4 Score=25.30 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=12.1
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|+-.|..|||||..
T Consensus 20 ~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 20 SIVVMGVSGSGKSSV 34 (202)
T ss_dssp CEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 566679999999864
No 262
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=53.70 E-value=6.2 Score=27.54 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.4
Q ss_pred EEEEeeccCCCccce
Q psy15017 70 ATILAYGQTGSGKTY 84 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~ 84 (97)
-.|+-.|.+|||||.
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 357778999999985
No 263
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.65 E-value=12 Score=28.57 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=14.1
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-+|.+|+|||+..
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46788999999999753
No 264
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=53.42 E-value=5.9 Score=27.21 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=13.4
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...+--.|.+|||||..+
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 344555699999999765
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=53.41 E-value=5.1 Score=25.12 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.8
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.+.-.|.+|||||..
T Consensus 31 ~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 31 HVVVMGVSGSGKTTI 45 (200)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 455569999999864
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=53.08 E-value=4.7 Score=24.98 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=12.3
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|+-.|..|||||..
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999864
No 267
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.92 E-value=4.1 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=19.5
Q ss_pred HHhCCCCEEEEeeccCCCccceee
Q psy15017 63 GSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 63 ~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++.|.+..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 356788888888999999998654
No 268
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=52.53 E-value=8.9 Score=28.60 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHhCCCCEEEEeeccCCCccceee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
-..+..|. .++-+|.+|+|||..+
T Consensus 54 ~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred cccccCCC--EEEEEeCCCCCHHHHH
Confidence 33445665 4455899999998765
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=52.21 E-value=4.9 Score=24.51 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=14.7
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....|...|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3446778899999998654
No 270
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=52.16 E-value=4.8 Score=24.80 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.0
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|.-.|..|||||.-
T Consensus 14 ~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQ 28 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466779999999853
No 271
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=52.15 E-value=9.1 Score=30.05 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=30.0
Q ss_pred eeccEEecCCCcHHHHHHHHHHHHHHH-HhCCC----CEEEEeeccCCCcccee
Q psy15017 37 FTFDYVFDMADVQTTIYELCAASLVAG-SLEGY----NATILAYGQTGSGKTYT 85 (97)
Q Consensus 37 F~fd~vf~~~~~q~~v~~~~~~p~v~~-~~~g~----n~~v~ayG~t~sGKt~T 85 (97)
-+|+.|-+.+.--+++-+.+..|+... ++... ...|+-||..|+|||..
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHH
Confidence 345555555545566655555565433 44433 24688899999999854
No 272
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=52.00 E-value=6.6 Score=25.47 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=13.8
Q ss_pred HHHHhCCCCEEEEeeccCCCccc
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKT 83 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt 83 (97)
+...........|-||.-|||||
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKS 34 (195)
T ss_dssp -------CCEEEEEEECTTSCHH
T ss_pred cccCCCCceEEEEEECCCCCcHH
Confidence 33444444557889999999999
No 273
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.98 E-value=4.4 Score=26.06 Aligned_cols=15 Identities=53% Similarity=0.720 Sum_probs=12.2
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
.+-.|..|||||+-+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 456799999999865
No 274
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=51.85 E-value=9.3 Score=26.64 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHhC--CC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE--GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~--g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++. |. ...+.-||..|+|||..+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 45666776 32 445777899999998753
No 275
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=51.51 E-value=5.2 Score=23.52 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|.+|+|||.-+
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 35667899999998754
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=51.47 E-value=3.8 Score=26.63 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.0
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999998654
No 277
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.33 E-value=4.8 Score=27.46 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=10.9
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-+|.+|||||--|
T Consensus 28 ~i~G~NGsGKS~ll 41 (322)
T 1e69_A 28 AIVGPNGSGKSNII 41 (322)
T ss_dssp EEECCTTTCSTHHH
T ss_pred EEECCCCCcHHHHH
Confidence 35799999998544
No 278
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=51.01 E-value=5 Score=24.81 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHhCCCCEEEEeeccCCCccceee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+.++.-...-|...|..++|||.-+
T Consensus 21 ~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 21 FSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp GGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHhccCCccEEEEECCCCCCHHHHH
Confidence 33445555667888999999998644
No 279
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=50.57 E-value=2.8 Score=26.86 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=13.6
Q ss_pred EEEeeccCCCccceeec
Q psy15017 71 TILAYGQTGSGKTYTMG 87 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~~ 87 (97)
..+-||..|||||..+.
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 56678999999997664
No 280
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=50.53 E-value=7.1 Score=24.84 Aligned_cols=15 Identities=47% Similarity=0.574 Sum_probs=11.3
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
...-+|.+|+|||.-
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 334579999999854
No 281
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.50 E-value=5.8 Score=27.95 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=12.0
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|+-.|.||||||.
T Consensus 42 lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 42 LLVLMGATGTGKSR 55 (339)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 67778999999985
No 282
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=50.40 E-value=13 Score=25.12 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=13.3
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...+--.|.+|||||..+
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 344555699999999765
No 283
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.01 E-value=6.8 Score=27.30 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=10.3
Q ss_pred EEeeccCCCccce
Q psy15017 72 ILAYGQTGSGKTY 84 (97)
Q Consensus 72 v~ayG~t~sGKt~ 84 (97)
.+-+|.+|+|||-
T Consensus 28 ~vi~G~NGaGKT~ 40 (371)
T 3auy_A 28 VAIIGENGSGKSS 40 (371)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3457999999984
No 284
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.62 E-value=5.4 Score=29.01 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHH-HhC--CC--CEEEEeeccCCCcccee
Q psy15017 49 QTTIYELCAASLVAG-SLE--GY--NATILAYGQTGSGKTYT 85 (97)
Q Consensus 49 q~~v~~~~~~p~v~~-~~~--g~--n~~v~ayG~t~sGKt~T 85 (97)
-+++-+.+..|+... ++. |. .-.|+=||..|+|||..
T Consensus 190 k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 190 IRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence 344555555554432 332 22 34577799999999864
No 285
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=49.47 E-value=8.3 Score=29.62 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.++..+.||||||+-+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 4667899999999643
No 286
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.47 E-value=5.3 Score=28.94 Aligned_cols=15 Identities=47% Similarity=0.844 Sum_probs=12.8
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.++-||..|+|||..
T Consensus 208 GiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 208 GVLLYGPPGTGKTML 222 (428)
T ss_dssp EEEEESCTTTTHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477899999999965
No 287
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=49.21 E-value=5.1 Score=25.78 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.2
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
...|+-.|..|||||+-
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577789999999863
No 288
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=49.11 E-value=5.9 Score=23.61 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=13.9
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...|...|.+|+|||.-+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 345777899999998644
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=48.86 E-value=5.8 Score=27.38 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|+|||.|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555599999999876
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.86 E-value=5.7 Score=25.35 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=12.1
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|+-.|..|||||.-
T Consensus 9 ~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTV 23 (227)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999853
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=48.77 E-value=19 Score=24.48 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=12.5
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+...|.+|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4445599999999875
No 292
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.75 E-value=6.7 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.0
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
...|+-.|..|||||.-
T Consensus 15 ~~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34566779999999853
No 293
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=48.74 E-value=5.3 Score=28.85 Aligned_cols=16 Identities=56% Similarity=0.655 Sum_probs=13.2
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.|.-.|..|+|||++.
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999876
No 294
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=48.49 E-value=14 Score=27.12 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=15.6
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
.+.+..|.+. ++-..||+|||..
T Consensus 16 ~~~l~~~~~~--~~~a~TGtGKT~~ 38 (551)
T 3crv_A 16 IEGLRNNFLV--ALNAPTGSGKTLF 38 (551)
T ss_dssp HHHHHTTCEE--EEECCTTSSHHHH
T ss_pred HHHHHcCCcE--EEECCCCccHHHH
Confidence 3455677654 4557899999864
No 295
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=48.40 E-value=6.7 Score=24.93 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=17.7
Q ss_pred HHHHHhC-CC--CEEEEeeccCCCcccee
Q psy15017 60 LVAGSLE-GY--NATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~-g~--n~~v~ayG~t~sGKt~T 85 (97)
-++.++. |. ...+.-+|.+|+|||.-
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 3455665 33 44667789999999853
No 296
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=48.30 E-value=12 Score=22.75 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=17.6
Q ss_pred HHHHhC--CCCEEEEeeccCCCccceee
Q psy15017 61 VAGSLE--GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 61 v~~~~~--g~n~~v~ayG~t~sGKt~T~ 86 (97)
+..++. -...-|...|..|+|||.-+
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~ 33 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLL 33 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHH
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHH
Confidence 334444 34556778899999998544
No 297
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=48.19 E-value=4.7 Score=29.83 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.1
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...++-+|.+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445677999999998754
No 298
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.04 E-value=4.6 Score=26.25 Aligned_cols=13 Identities=38% Similarity=0.670 Sum_probs=10.7
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..+
T Consensus 35 iiG~nGsGKSTLl 47 (224)
T 2pcj_A 35 IIGASGSGKSTLL 47 (224)
T ss_dssp EEECTTSCHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4599999999655
No 299
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.93 E-value=6.7 Score=27.41 Aligned_cols=15 Identities=47% Similarity=0.589 Sum_probs=12.1
Q ss_pred EEEEeeccCCCccce
Q psy15017 70 ATILAYGQTGSGKTY 84 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~ 84 (97)
-.++-.|.||||||.
T Consensus 11 ~~i~i~GptgsGKt~ 25 (316)
T 3foz_A 11 KAIFLMGPTASGKTA 25 (316)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCccCHHH
Confidence 356678999999984
No 300
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=47.74 E-value=7.6 Score=26.00 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.7
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..+
T Consensus 42 liG~nGsGKSTLl 54 (266)
T 4g1u_C 42 IIGPNGAGKSTLL 54 (266)
T ss_dssp EECCTTSCHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 3699999998765
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=47.59 E-value=7 Score=23.94 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=11.6
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|+-.|..|||||.
T Consensus 11 ~I~l~G~~GsGKsT 24 (196)
T 2c95_A 11 IIFVVGGPGSGKGT 24 (196)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46667999999985
No 302
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=47.53 E-value=7 Score=27.32 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=17.0
Q ss_pred HHHHHh---CCCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSL---EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~---~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++.++ .|.-.. -.|.+|+|||..|
T Consensus 61 ald~ll~i~~Gq~~g--IiG~nGaGKTTLl 88 (347)
T 2obl_A 61 AIDGLLTCGIGQRIG--IFAGSGVGKSTLL 88 (347)
T ss_dssp HHHHHSCEETTCEEE--EEECTTSSHHHHH
T ss_pred EEEeeeeecCCCEEE--EECCCCCCHHHHH
Confidence 455555 455444 4799999999776
No 303
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=47.50 E-value=6.5 Score=23.12 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=12.8
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|.+|+|||.-+
T Consensus 8 ~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4667899999998654
No 304
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.36 E-value=6.3 Score=28.44 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHH-HhC--CC--CEEEEeeccCCCcccee
Q psy15017 49 QTTIYELCAASLVAG-SLE--GY--NATILAYGQTGSGKTYT 85 (97)
Q Consensus 49 q~~v~~~~~~p~v~~-~~~--g~--n~~v~ayG~t~sGKt~T 85 (97)
-+++-+.+..|+... ++. |. .-.++=||..|+|||..
T Consensus 157 k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 157 IKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 455555555565433 332 22 23467799999999864
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.35 E-value=7.1 Score=23.71 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=11.8
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|.-.|..|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456679999999863
No 306
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=47.27 E-value=10 Score=24.89 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=12.3
Q ss_pred EEEEeeccCCCcccee
Q psy15017 70 ATILAYGQTGSGKTYT 85 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T 85 (97)
..++-.|.||+|||-.
T Consensus 35 ~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 35 LGVLITGDSGVGKSET 50 (205)
T ss_dssp EEEEEECCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466779999999743
No 307
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=47.22 E-value=4.9 Score=26.84 Aligned_cols=14 Identities=50% Similarity=0.748 Sum_probs=11.4
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 37 ~liG~nGsGKSTLl 50 (266)
T 2yz2_A 37 LVAGNTGSGKSTLL 50 (266)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999766
No 308
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=47.13 E-value=6.3 Score=25.00 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=11.5
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|+-.|..|||||.
T Consensus 7 ~I~l~G~~GsGKsT 20 (222)
T 1zak_A 7 KVMISGAPASGKGT 20 (222)
T ss_dssp CEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46668999999985
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=47.11 E-value=5.6 Score=29.16 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=13.5
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.++-||.+|+|||+.+
T Consensus 51 gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLA 66 (476)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999764
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=47.07 E-value=7.2 Score=24.39 Aligned_cols=15 Identities=47% Similarity=0.352 Sum_probs=11.3
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+---|.+|||||..+
T Consensus 9 i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 9 IGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444599999998654
No 311
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=47.00 E-value=7 Score=25.84 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-+|.+|+|||..+
T Consensus 32 i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLA 47 (279)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566899999998754
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.73 E-value=5.1 Score=26.32 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 36 ~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 36 TLIGANGAGKTTTL 49 (240)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999766
No 313
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=46.72 E-value=6.8 Score=23.09 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=13.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|.+|+|||.-+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35677899999998654
No 314
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=46.66 E-value=8.9 Score=23.35 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=11.6
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|.--|..|||||..
T Consensus 7 ~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 7 TVWLTGLSGAGKTTV 21 (179)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 455569999999864
No 315
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=46.59 E-value=9 Score=23.81 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=14.3
Q ss_pred CCCCEEEEeeccCCCccce
Q psy15017 66 EGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~ 84 (97)
......|+-.|..|||||.
T Consensus 17 ~~~~~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGT 35 (201)
T ss_dssp CCSCCEEEEECCTTSSHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 3444467778999999985
No 316
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=46.56 E-value=15 Score=25.03 Aligned_cols=28 Identities=18% Similarity=-0.032 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+...+-+|..-..+-||..|+|||.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 3444455666557778999999998654
No 317
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=46.44 E-value=6 Score=25.98 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=11.8
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..+
T Consensus 31 ~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999765
No 318
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=46.42 E-value=5.1 Score=26.42 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=11.7
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..+
T Consensus 27 ~~liG~nGsGKSTLl 41 (240)
T 2onk_A 27 CVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999998765
No 319
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=46.39 E-value=11 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=17.7
Q ss_pred HHHHHhCCC-CEEEEeeccCCCcccee
Q psy15017 60 LVAGSLEGY-NATILAYGQTGSGKTYT 85 (97)
Q Consensus 60 ~v~~~~~g~-n~~v~ayG~t~sGKt~T 85 (97)
+...+-.|. .-.++-||..|+|||.+
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHH
Confidence 334444554 33577799999999875
No 320
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.06 E-value=5.3 Score=26.52 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=11.4
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 37 ~liG~nGsGKSTLl 50 (257)
T 1g6h_A 37 LIIGPNGSGKSTLI 50 (257)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 321
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=46.05 E-value=5.2 Score=28.23 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=11.3
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..|
T Consensus 34 llGpnGsGKSTLL 46 (359)
T 2yyz_A 34 LLGPSGCGKTTTL 46 (359)
T ss_dssp EECSTTSSHHHHH
T ss_pred EEcCCCchHHHHH
Confidence 4699999999876
No 322
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=46.00 E-value=10 Score=29.53 Aligned_cols=51 Identities=25% Similarity=0.280 Sum_probs=31.0
Q ss_pred eeeccEEecCCCcHHHHHHHHHHHHHHH-HhC----CCCEEEEeeccCCCccceee
Q psy15017 36 SFTFDYVFDMADVQTTIYELCAASLVAG-SLE----GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~-~~~----g~n~~v~ayG~t~sGKt~T~ 86 (97)
...|+.+-+.+..-+.+.+.+..|+... +++ .....++-||.+|+|||..+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4566666666655566666555544332 222 22335777999999999754
No 323
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=45.78 E-value=8.2 Score=27.17 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..++-+|..|+|||+-.
T Consensus 124 sviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEEECSCSSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34567999999999754
No 324
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=45.73 E-value=7.2 Score=23.20 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 8 ~~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34677899999998644
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=45.72 E-value=7.2 Score=22.85 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.8
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..++|||.-+
T Consensus 8 ~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998654
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=45.58 E-value=5.2 Score=28.29 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=11.2
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..|
T Consensus 35 llGpsGsGKSTLL 47 (359)
T 3fvq_A 35 IIGASGCGKTTLL 47 (359)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCchHHHHH
Confidence 4699999999876
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=45.52 E-value=5.4 Score=25.05 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.1
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.--|.+|||||..+
T Consensus 9 i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 9 LAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 334599999998654
No 328
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=45.49 E-value=5.4 Score=28.25 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=11.6
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 33 ~llGpnGsGKSTLL 46 (372)
T 1g29_1 33 ILLGPSGCGKTTTL 46 (372)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCcHHHHHH
Confidence 34699999999876
No 329
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=45.41 E-value=5.4 Score=26.95 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=11.0
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..+
T Consensus 39 iiGpnGsGKSTLl 51 (275)
T 3gfo_A 39 ILGGNGVGKSTLF 51 (275)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999766
No 330
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=45.38 E-value=7.2 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..|+|||.-+
T Consensus 16 ~i~v~G~~~~GKssli 31 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLI 31 (179)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999998654
No 331
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=45.33 E-value=7 Score=23.76 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..|...|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999998654
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=45.33 E-value=5.4 Score=28.12 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=11.2
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..|
T Consensus 46 llGpnGsGKSTLL 58 (355)
T 1z47_A 46 LLGPSGSGKTTIL 58 (355)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 4699999999876
No 333
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=45.24 E-value=9.1 Score=26.73 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=10.5
Q ss_pred EeeccCCCcccee
Q psy15017 73 LAYGQTGSGKTYT 85 (97)
Q Consensus 73 ~ayG~t~sGKt~T 85 (97)
.-.|.+|||||.-
T Consensus 27 ~i~G~NGaGKTTl 39 (365)
T 3qf7_A 27 VVEGPNGAGKSSL 39 (365)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3579999999854
No 334
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=45.23 E-value=5.5 Score=26.57 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.8
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..+
T Consensus 37 liG~nGsGKSTLl 49 (262)
T 1b0u_A 37 IIGSSGSGKSTFL 49 (262)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4699999999765
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=45.18 E-value=7.3 Score=24.30 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=15.2
Q ss_pred CCCEEEEeeccCCCccceee
Q psy15017 67 GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~ 86 (97)
.....|...|.+|+|||..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34456778899999998654
No 336
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=45.11 E-value=9.6 Score=24.00 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=12.8
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
...|.-.|..|||||..
T Consensus 25 ~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34566679999999854
No 337
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=45.08 E-value=4.1 Score=32.99 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=12.0
Q ss_pred EeeccCCCccceeec
Q psy15017 73 LAYGQTGSGKTYTMG 87 (97)
Q Consensus 73 ~ayG~t~sGKt~T~~ 87 (97)
+.-...|||||+||.
T Consensus 20 lV~AsAGSGKT~~L~ 34 (1180)
T 1w36_B 20 LIEASAGTGKTFTIA 34 (1180)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEEECCCCCHHHHHH
Confidence 445789999999973
No 338
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=45.08 E-value=5 Score=26.08 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=11.0
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..|
T Consensus 40 iiG~NGsGKSTLl 52 (214)
T 1sgw_A 40 FHGPNGIGKTTLL 52 (214)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999766
No 339
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=45.07 E-value=3.4 Score=26.92 Aligned_cols=15 Identities=40% Similarity=0.381 Sum_probs=11.3
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+---|.+|||||..+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334499999998754
No 340
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=44.97 E-value=7.2 Score=23.55 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=12.9
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|.+|+|||..+
T Consensus 25 ~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLL 40 (195)
T ss_dssp EEEEEEBTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998655
No 341
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=44.96 E-value=7.8 Score=26.23 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=11.9
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|+|||..+
T Consensus 172 v~l~G~sG~GKSTll 186 (301)
T 1u0l_A 172 STMAGLSGVGKSSLL 186 (301)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 344699999999766
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=44.95 E-value=5.5 Score=28.42 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=11.3
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||.+|
T Consensus 34 llGpsGsGKSTLL 46 (381)
T 3rlf_A 34 FVGPSGCGKSTLL 46 (381)
T ss_dssp EECCTTSSHHHHH
T ss_pred EEcCCCchHHHHH
Confidence 4699999999876
No 343
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=44.83 E-value=7.5 Score=23.09 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..++|||.-+
T Consensus 11 ~i~v~G~~~~GKssl~ 26 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLL 26 (181)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998654
No 344
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=44.78 E-value=7.2 Score=21.50 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=12.1
Q ss_pred EeeccCCCccceeec
Q psy15017 73 LAYGQTGSGKTYTMG 87 (97)
Q Consensus 73 ~ayG~t~sGKt~T~~ 87 (97)
.--|.+.|||-|||.
T Consensus 11 ~RsGvsksg~pYtm~ 25 (78)
T 1pfs_A 11 VRQGTSAKGNPYTFQ 25 (78)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEecccccCCceEeE
Confidence 445778999999994
No 345
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=44.59 E-value=7.6 Score=23.53 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.0
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.|...|..|+|||..+
T Consensus 23 ki~vvG~~~~GKSsli 38 (190)
T 3con_A 23 KLVVVGAGGVGKSALT 38 (190)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5677899999998654
No 346
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=44.43 E-value=7.8 Score=22.84 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 8 ~~i~v~G~~~~GKssl~ 24 (171)
T 1upt_A 8 MRILILGLDGAGKTTIL 24 (171)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45667899999998644
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=44.35 E-value=7.8 Score=22.97 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 16 ~~i~v~G~~~~GKSsli 32 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLL 32 (179)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999998643
No 348
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=44.29 E-value=5.8 Score=28.05 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=11.6
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 33 ~llGpnGsGKSTLL 46 (362)
T 2it1_A 33 ALLGPSGSGKSTLL 46 (362)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCchHHHHH
Confidence 34699999999876
No 349
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=44.27 E-value=5.8 Score=26.59 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=12.0
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..|
T Consensus 33 ~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 33 VIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999776
No 350
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=44.26 E-value=7.6 Score=23.07 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 10 ~~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALT 26 (181)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999998644
No 351
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.20 E-value=5.9 Score=26.19 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 39 ~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 39 GIVGRSGSGKSTLT 52 (247)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 352
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=44.18 E-value=11 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=14.7
Q ss_pred CCCEEEEeeccCCCccceee
Q psy15017 67 GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~ 86 (97)
....-|...|..++|||.-+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli 45 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALV 45 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHH
T ss_pred CCceEEEEECCCCCCHHHHH
Confidence 34456778899999998644
No 353
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=44.07 E-value=5.9 Score=26.39 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=11.8
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|||||..+
T Consensus 49 ~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 49 CALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999765
No 354
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.97 E-value=5.9 Score=26.42 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=11.4
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 45 ~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 45 GLIGPNGAGKTTTL 58 (256)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 355
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=43.91 E-value=5.9 Score=26.55 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 54 ~liG~NGsGKSTLl 67 (263)
T 2olj_A 54 VVIGPSGSGKSTFL 67 (263)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEcCCCCcHHHHH
Confidence 34699999999765
No 356
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=43.84 E-value=8.7 Score=25.13 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=11.2
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 35 ~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 35 AVVGQVGCGKSSLL 48 (237)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 44699999998754
No 357
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=43.69 E-value=11 Score=23.46 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=12.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
-.+...|..|+|||..+
T Consensus 31 ~~i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLI 47 (221)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 34555699999998654
No 358
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.65 E-value=9 Score=23.01 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.3
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|+-.|..|||||.
T Consensus 9 ~i~l~G~~GsGKST 22 (168)
T 1zuh_A 9 HLVLIGFMGSGKSS 22 (168)
T ss_dssp EEEEESCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 45667999999985
No 359
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=43.64 E-value=18 Score=25.58 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-+|.+|+|||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999998643
No 360
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=43.45 E-value=8.7 Score=27.00 Aligned_cols=14 Identities=50% Similarity=0.567 Sum_probs=11.6
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|.-.|.+|||||.
T Consensus 9 lI~I~GptgSGKTt 22 (340)
T 3d3q_A 9 LIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCcCcHHH
Confidence 56677999999985
No 361
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=43.42 E-value=8 Score=23.25 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 11 ~ki~v~G~~~~GKSsli 27 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLL 27 (186)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45677899999998644
No 362
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=43.39 E-value=21 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=19.9
Q ss_pred HHHHHHHHh--CCCCEEEEeeccCCCccceee
Q psy15017 57 AASLVAGSL--EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 57 ~~p~v~~~~--~g~n~~v~ayG~t~sGKt~T~ 86 (97)
...++..++ .+..-.|..-|..|+|||..+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 334455554 455556666799999999765
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=43.32 E-value=6.1 Score=28.03 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=11.2
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..|
T Consensus 42 llGpnGsGKSTLL 54 (372)
T 1v43_A 42 LLGPSGCGKTTTL 54 (372)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCChHHHHH
Confidence 4699999999876
No 364
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=43.29 E-value=16 Score=31.01 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=16.8
Q ss_pred HHHHHHhCCCCEEEEeeccCCCccce
Q psy15017 59 SLVAGSLEGYNATILAYGQTGSGKTY 84 (97)
Q Consensus 59 p~v~~~~~g~n~~v~ayG~t~sGKt~ 84 (97)
.++..++++... ++.-..||||||.
T Consensus 933 q~~~~l~~~~~n-vlv~APTGSGKTl 957 (1724)
T 4f92_B 933 QVFNTVYNSDDN-VFVGAPTGSGKTI 957 (1724)
T ss_dssp HHHHHHHSCCSC-EEEECCTTSCCHH
T ss_pred HHHHHHhcCCCc-EEEEeCCCCCchH
Confidence 355667765443 4456899999985
No 365
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=43.15 E-value=16 Score=24.76 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHHhCCC--CEEEEeeccCCCcccee
Q psy15017 59 SLVAGSLEGY--NATILAYGQTGSGKTYT 85 (97)
Q Consensus 59 p~v~~~~~g~--n~~v~ayG~t~sGKt~T 85 (97)
+-++.++.|. ...++-.|.+|+|||.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl 84 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAF 84 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHH
Confidence 4566776554 34566679999999843
No 366
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=42.94 E-value=6.3 Score=26.02 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 33 ~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 33 ALMGPNGAGKSTLG 46 (250)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 367
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=42.92 E-value=6.4 Score=26.12 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 35 ~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 35 AVLGQNGCGKSTLL 48 (253)
T ss_dssp EEECCSSSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=42.87 E-value=5.5 Score=25.93 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=14.4
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...|.-.|.+|+|||.++
T Consensus 22 ~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346777899999998765
No 369
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=42.85 E-value=8.4 Score=23.57 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 15 ~ki~v~G~~~~GKSsli 31 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALT 31 (206)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35677899999998654
No 370
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=42.72 E-value=8.5 Score=22.97 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=13.1
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 19 ~ki~v~G~~~~GKSsli 35 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALT 35 (187)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34677899999998643
No 371
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=42.58 E-value=11 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.7
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...|...|..|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 335667899999998655
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=42.56 E-value=8.7 Score=26.67 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=12.2
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+---|.+|||||.++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3444599999999765
No 373
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=42.49 E-value=9.4 Score=28.75 Aligned_cols=23 Identities=17% Similarity=-0.025 Sum_probs=17.4
Q ss_pred HHHHhCCCCEEEEeeccCCCcccee
Q psy15017 61 VAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 61 v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
+..+++|.+. +..+.||||||..
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~ 202 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKR 202 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTT
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHH
Confidence 5556677764 5679999999986
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=42.44 E-value=8.6 Score=22.93 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=13.8
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 12 ~~ki~v~G~~~~GKSsli 29 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLV 29 (181)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECcCCCCHHHHH
Confidence 345778899999998643
No 375
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=42.41 E-value=6.5 Score=25.60 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=11.2
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 38 ~i~G~nGsGKSTLl 51 (229)
T 2pze_A 38 AVAGSTGAGKTSLL 51 (229)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 376
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=42.32 E-value=17 Score=25.60 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=20.4
Q ss_pred HHHHHHhC--CC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE--GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~--g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++. |. ...+.-+|.+|+|||.-+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 55677776 33 456778999999998653
No 377
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=42.23 E-value=16 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.6
Q ss_pred CCCEEEEeeccCCCccceee
Q psy15017 67 GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~ 86 (97)
....-|...|..++|||.-+
T Consensus 20 ~~~~~i~v~G~~~~GKssli 39 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSIL 39 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHH
T ss_pred CCceEEEEECCCCCCHHHHH
Confidence 35567888999999998644
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=41.99 E-value=9.6 Score=23.80 Aligned_cols=15 Identities=47% Similarity=0.348 Sum_probs=11.5
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.+.--|.+|||||..
T Consensus 23 ~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 23 IIGISGVTNSGKTTL 37 (207)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 455569999999854
No 379
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.94 E-value=7.6 Score=28.60 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=13.6
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
.-.|+=||..|+|||..
T Consensus 243 prGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSEEEECSCTTSSHHHH
T ss_pred CCceEeeCCCCCcHHHH
Confidence 34577899999999864
No 380
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=41.93 E-value=9.8 Score=26.22 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=12.2
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
++.-.|.+|||||.-+
T Consensus 128 ~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLC 143 (305)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4555799999998644
No 381
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=41.87 E-value=6.6 Score=26.23 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=11.4
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 50 ~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 50 AIMGPNGSGKSTLS 63 (267)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 382
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=41.77 E-value=9 Score=22.99 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.6
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..|+|||.-+
T Consensus 18 ~~ki~v~G~~~~GKSsl~ 35 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALT 35 (183)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345677899999998543
No 383
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=41.68 E-value=9 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.0
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 7 ~~ki~v~G~~~~GKSsli 24 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIV 24 (208)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 445778899999998654
No 384
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=41.54 E-value=6.8 Score=26.00 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.4
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 30 ~liG~NGsGKSTLl 43 (249)
T 2qi9_C 30 HLVGPNGAGKSTLL 43 (249)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999765
No 385
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=41.52 E-value=9.9 Score=23.43 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=12.9
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|+|||..+
T Consensus 7 kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999998765
No 386
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=41.44 E-value=10 Score=23.17 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=10.8
Q ss_pred eccCCCccceee
Q psy15017 75 YGQTGSGKTYTM 86 (97)
Q Consensus 75 yG~t~sGKt~T~ 86 (97)
.|.+|-||++|+
T Consensus 92 vgRSGRGKsFtl 103 (140)
T 1eaq_A 92 VGRSGRGKSFTL 103 (140)
T ss_dssp CSCCCTTCCBEE
T ss_pred cccCCCCccEEE
Confidence 499999999987
No 387
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=41.41 E-value=11 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=16.9
Q ss_pred HHHHHhC-CCCEEEEeeccCCCccceee
Q psy15017 60 LVAGSLE-GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 60 ~v~~~~~-g~n~~v~ayG~t~sGKt~T~ 86 (97)
.++.++. +....+--.|.+|+|||..|
T Consensus 147 vld~vl~i~~Gq~~~IvG~sGsGKSTLl 174 (438)
T 2dpy_A 147 AINALLTVGRGQRMGLFAGSGVGKSVLL 174 (438)
T ss_dssp HHHHHSCCBTTCEEEEEECTTSSHHHHH
T ss_pred EEeeeEEecCCCEEEEECCCCCCHHHHH
Confidence 4555553 33333444799999999755
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=41.25 E-value=10 Score=23.57 Aligned_cols=14 Identities=36% Similarity=0.339 Sum_probs=11.6
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|.--|..|||||.
T Consensus 12 ~I~l~G~~GsGKST 25 (212)
T 2wwf_A 12 FIVFEGLDRSGKST 25 (212)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 56677999999985
No 389
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=41.24 E-value=6.9 Score=26.43 Aligned_cols=14 Identities=43% Similarity=0.821 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 51 ~liG~NGsGKSTLl 64 (279)
T 2ihy_A 51 ILYGLNGAGKTTLL 64 (279)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999765
No 390
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.22 E-value=6.9 Score=26.24 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..+
T Consensus 49 ~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 49 ALVGPNGSGKSTVA 62 (271)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=41.18 E-value=10 Score=23.43 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=12.6
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|+|||..+
T Consensus 28 ~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 28 EVAFAGRSNAGKSSAL 43 (210)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999755
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=41.11 E-value=9.3 Score=22.82 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|.+|+|||.-+
T Consensus 7 ~i~~~G~~~~GKssl~ 22 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLL 22 (186)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998765
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=40.81 E-value=9.1 Score=24.28 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=11.6
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|+-.|..|||||.
T Consensus 7 ~I~l~G~~GsGKsT 20 (217)
T 3be4_A 7 NLILIGAPGSGKGT 20 (217)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46668999999985
No 394
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=40.80 E-value=9 Score=27.24 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCCEEEEeeccCCCcccee
Q psy15017 67 GYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T 85 (97)
.....|+-.|.+|||||.-
T Consensus 256 ~~~~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTF 274 (416)
T ss_dssp SSCCEEEEESCTTSSHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 4445677789999999864
No 395
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=40.75 E-value=9.5 Score=22.87 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..|...|..|+|||.-+
T Consensus 12 ~ki~v~G~~~~GKSsli 28 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVL 28 (195)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45677899999998644
No 396
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=40.65 E-value=8.3 Score=27.15 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=12.6
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
...-+|.+|+|||-.+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 4456799999998765
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=40.63 E-value=11 Score=23.79 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.5
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|.--|.+|||||.-
T Consensus 7 ~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 7 VITIDGPSGAGKGTL 21 (227)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 455569999999853
No 398
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=40.50 E-value=11 Score=25.84 Aligned_cols=14 Identities=50% Similarity=0.762 Sum_probs=11.2
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-+|.+|+|||.-|
T Consensus 27 ~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 27 LIIGQNGSGKSSLL 40 (339)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35799999998655
No 399
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=40.32 E-value=18 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=18.9
Q ss_pred HHHHHHhCCC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLEGY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+.++.++.|. ...+.-.|.+|+|||.-+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~ 220 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFA 220 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHH
Confidence 4456666444 345667799999998543
No 400
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=39.97 E-value=5 Score=28.18 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=11.6
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 30 ~llGpnGsGKSTLL 43 (348)
T 3d31_A 30 VILGPTGAGKTLFL 43 (348)
T ss_dssp EEECCCTHHHHHHH
T ss_pred EEECCCCccHHHHH
Confidence 34699999999876
No 401
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=39.90 E-value=10 Score=22.55 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=13.0
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 7 ~ki~v~G~~~~GKssl~ 23 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLT 23 (178)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45677899999998543
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.81 E-value=9.7 Score=24.83 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=11.7
Q ss_pred EEEeeccCCCccce
Q psy15017 71 TILAYGQTGSGKTY 84 (97)
Q Consensus 71 ~v~ayG~t~sGKt~ 84 (97)
.|+-+|..||||+.
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57788999999963
No 403
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=39.73 E-value=10 Score=23.08 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=13.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|.+|+|||.-+
T Consensus 26 ~ki~v~G~~~~GKSsLi 42 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLL 42 (193)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45777899999998644
No 404
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=39.58 E-value=6.8 Score=25.15 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=14.1
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
.-.|.-.|.+|+|||..+
T Consensus 29 ~~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATG 46 (239)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345777899999998655
No 405
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=39.52 E-value=9.9 Score=23.41 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..+.-.|.+|+|||..+
T Consensus 30 ~kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 34566799999998765
No 406
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=39.41 E-value=10 Score=22.83 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.|.-.|.+|+|||..+
T Consensus 9 ~i~lvG~~gvGKStL~ 24 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIF 24 (188)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999998654
No 407
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=39.19 E-value=10 Score=23.06 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=14.3
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
...-|...|..|+|||.-+
T Consensus 20 ~~~ki~v~G~~~~GKSsli 38 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTII 38 (190)
T ss_dssp -CEEEEEEECTTSSHHHHH
T ss_pred CccEEEEECCCCCCHHHHH
Confidence 3456778899999998654
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=39.19 E-value=10 Score=22.56 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=13.7
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 8 ~~ki~v~G~~~~GKssl~ 25 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLL 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 345677899999998644
No 409
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=39.00 E-value=14 Score=22.68 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 34 ~ki~vvG~~~~GKSsli 50 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLL 50 (199)
T ss_dssp EEEEEECCTTSCCTTTT
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999998654
No 410
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=39.00 E-value=11 Score=22.49 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
..|...|..++|||.-+
T Consensus 11 ~~i~v~G~~~~GKssli 27 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLL 27 (180)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35677899999998654
No 411
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=38.81 E-value=12 Score=22.34 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=8.7
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 9 ~ki~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEEEECCCCC------
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34667899999998755
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=38.81 E-value=11 Score=24.98 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.-.|.+|+|||..+
T Consensus 37 ~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFV 52 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4556799999998765
No 413
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=38.81 E-value=20 Score=25.07 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=19.2
Q ss_pred HHHHHHhC--CC--CEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLE--GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~--g~--n~~v~ayG~t~sGKt~T~ 86 (97)
+-++.++. |. ...+.-+|..|+|||...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 44566664 22 445677899999998754
No 414
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.81 E-value=9.9 Score=27.79 Aligned_cols=16 Identities=38% Similarity=0.762 Sum_probs=13.3
Q ss_pred EEEEeeccCCCcccee
Q psy15017 70 ATILAYGQTGSGKTYT 85 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T 85 (97)
-.|+=||..|+|||..
T Consensus 217 rGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLL 232 (437)
T ss_dssp SEEEEESSTTTTHHHH
T ss_pred CCCceECCCCchHHHH
Confidence 4577899999999864
No 415
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=38.77 E-value=20 Score=25.55 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=19.1
Q ss_pred HHHHHHhCCC--CEEEEeeccCCCcccee
Q psy15017 59 SLVAGSLEGY--NATILAYGQTGSGKTYT 85 (97)
Q Consensus 59 p~v~~~~~g~--n~~v~ayG~t~sGKt~T 85 (97)
+-++.++.|. ...+.-.|.+|+|||.-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~l 216 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAF 216 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHH
Confidence 4566777554 34567789999999854
No 416
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=38.61 E-value=11 Score=26.60 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=14.4
Q ss_pred HhCCCCEEEEeeccCCCccceee
Q psy15017 64 SLEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 64 ~~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.+.|. ++.-.|.+|+|||..+
T Consensus 212 ~~~G~--~~~lvG~sG~GKSTLl 232 (358)
T 2rcn_A 212 ALTGR--ISIFAGQSGVGKSSLL 232 (358)
T ss_dssp HHTTS--EEEEECCTTSSHHHHH
T ss_pred hcCCC--EEEEECCCCccHHHHH
Confidence 34554 3445699999999665
No 417
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=38.58 E-value=23 Score=23.23 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=14.7
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...|...|.+|+|||..+
T Consensus 39 ~~~I~vvG~~g~GKSSLi 56 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTV 56 (270)
T ss_dssp EEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788899999998754
No 418
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=38.49 E-value=12 Score=24.08 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=11.3
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|+|||..+
T Consensus 22 ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 22 LVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 344699999998653
No 419
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=38.44 E-value=11 Score=22.89 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=14.2
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....|...|..++|||.-+
T Consensus 19 ~~~ki~v~G~~~~GKSsli 37 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLT 37 (189)
T ss_dssp CEEEEEEECCTTSSHHHHH
T ss_pred ceEEEEEECCCCCCHHHHH
Confidence 3446777899999998543
No 420
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=38.41 E-value=23 Score=26.66 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 47 DVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 47 ~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
..|.++-.. +.+.+.+|.+ +++-..||+|||..
T Consensus 6 ~~Q~~~~~~----v~~~l~~~~~--~~~~apTGtGKT~a 38 (620)
T 4a15_A 6 QYQVEAIDF----LRSSLQKSYG--VALESPTGSGKTIM 38 (620)
T ss_dssp HHHHHHHHH----HHHHHHHSSE--EEEECCTTSCHHHH
T ss_pred HHHHHHHHH----HHHHHHcCCC--EEEECCCCCCHHHH
Confidence 345554443 2334455654 56778999999964
No 421
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=38.36 E-value=15 Score=26.15 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHH-hCCCCEEEEeeccCCCccceee
Q psy15017 51 TIYELCAASLVAGS-LEGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 51 ~v~~~~~~p~v~~~-~~g~n~~v~ayG~t~sGKt~T~ 86 (97)
..|+..+.+.+... ..|.++ |+| -.+|+|||.++
T Consensus 39 ~~~Q~~~v~~l~~~~~~~~~~-ila-d~~GlGKT~~a 73 (500)
T 1z63_A 39 RPYQIKGFSWMRFMNKLGFGI-CLA-DDMGLGKTLQT 73 (500)
T ss_dssp CHHHHHHHHHHHHHHHTTCCE-EEC-CCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCCE-EEE-eCCCCcHHHHH
Confidence 34444433323233 345554 444 79999999875
No 422
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=38.27 E-value=11 Score=23.08 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=14.0
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 26 ~~ki~vvG~~~~GKSsLi 43 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLM 43 (192)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345777899999998654
No 423
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=37.94 E-value=8.1 Score=27.56 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=11.1
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||.+|
T Consensus 52 llGpsGsGKSTLL 64 (390)
T 3gd7_A 52 LLGRTGSGKSTLL 64 (390)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCChHHHHH
Confidence 3699999999876
No 424
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=37.80 E-value=11 Score=23.05 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 9 ~ki~v~G~~~~GKSsli 25 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLM 25 (207)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35677899999998644
No 425
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=37.79 E-value=31 Score=21.43 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=12.5
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...|.-.|..|+|||..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~ 55 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLI 55 (226)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 344555599999998543
No 426
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=37.77 E-value=11 Score=22.52 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=12.5
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..|+|||.-+
T Consensus 8 ki~~~G~~~~GKSsli 23 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLT 23 (181)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4667899999998543
No 427
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=37.58 E-value=33 Score=25.33 Aligned_cols=16 Identities=50% Similarity=0.609 Sum_probs=12.5
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.|.-.|..|+|||.+.
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4445599999999875
No 428
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=37.56 E-value=7.4 Score=28.47 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=14.5
Q ss_pred EEEEeeccCCCccceeec
Q psy15017 70 ATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~~ 87 (97)
...+..|..|+|||+.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL 179 (446)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 345678999999999884
No 429
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=37.54 E-value=11 Score=22.77 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.1
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 8 ~ki~v~G~~~vGKSsli 24 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALL 24 (184)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34667899999998654
No 430
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=37.37 E-value=10 Score=22.91 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=13.9
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 21 ~~~i~v~G~~~~GKSsli 38 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTIL 38 (181)
T ss_dssp CEEEEEEEETTSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 345777899999998644
No 431
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=37.35 E-value=21 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=20.5
Q ss_pred HHHHHHhC-CC--CEEEEeeccCCCccceeec
Q psy15017 59 SLVAGSLE-GY--NATILAYGQTGSGKTYTMG 87 (97)
Q Consensus 59 p~v~~~~~-g~--n~~v~ayG~t~sGKt~T~~ 87 (97)
+-++.++. |. ...+.-+|.+|+|||..+.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 56777774 32 3456678999999997653
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=37.35 E-value=12 Score=22.70 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 17 ~ki~v~G~~~~GKSsli 33 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLL 33 (196)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35777899999998644
No 433
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=37.31 E-value=13 Score=24.22 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.6
Q ss_pred CCEEEEeeccCCCccce
Q psy15017 68 YNATILAYGQTGSGKTY 84 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~ 84 (97)
....|+-.|..|||||.
T Consensus 28 ~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 44567788999999974
No 434
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=37.11 E-value=13 Score=26.67 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=14.8
Q ss_pred hCCCCEEEEeeccCCCcccee
Q psy15017 65 LEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 65 ~~g~n~~v~ayG~t~sGKt~T 85 (97)
+......|+-.|..|||||+.
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTi 55 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYI 55 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHH
Confidence 344556788889999999863
No 435
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=37.09 E-value=13 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=11.9
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|.--|..|||||..
T Consensus 11 ~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQ 25 (215)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 566679999999853
No 436
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=37.01 E-value=14 Score=27.20 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.1
Q ss_pred CCEEEEeeccCCCcccee
Q psy15017 68 YNATILAYGQTGSGKTYT 85 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T 85 (97)
...+|+-.|..|||||+.
T Consensus 34 ~~~lIvlvGlpGSGKSTi 51 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYI 51 (520)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345677889999999863
No 437
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=36.93 E-value=13 Score=28.44 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=13.9
Q ss_pred CCCCEEEEeeccCCCcccee
Q psy15017 66 EGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~T 85 (97)
+|.+ ++..+.||||||..
T Consensus 240 ~g~d--vlv~apTGSGKTl~ 257 (673)
T 2wv9_A 240 KRQL--TVLDLHPGAGKTRR 257 (673)
T ss_dssp TTCE--EEECCCTTTTTTTT
T ss_pred cCCe--EEEEeCCCCCHHHH
Confidence 5554 45689999999976
No 438
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=36.87 E-value=12 Score=23.22 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=12.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..|+|||.-+
T Consensus 9 ki~vvG~~~~GKTsli 24 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLF 24 (214)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998644
No 439
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=36.73 E-value=8.7 Score=26.12 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=11.3
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 68 ~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 68 AVAGSTGAGKTSLL 81 (290)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34599999999765
No 440
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=36.71 E-value=12 Score=22.55 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=12.8
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..++|||.-+
T Consensus 17 ~i~v~G~~~~GKssli 32 (195)
T 1x3s_A 17 KILIIGESGVGKSSLL 32 (195)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998644
No 441
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=36.69 E-value=12 Score=23.09 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 9 ~ki~v~G~~~~GKSsli 25 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLL 25 (206)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34677899999998644
No 442
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=36.47 E-value=12 Score=22.90 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 9 ~ki~v~G~~~~GKSsli 25 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFL 25 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34677899999998644
No 443
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=36.35 E-value=12 Score=22.73 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=12.9
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..++|||.-+
T Consensus 23 ki~v~G~~~~GKSsli 38 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLL 38 (191)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4677899999998654
No 444
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=36.29 E-value=12 Score=23.11 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 26 ~ki~v~G~~~~GKSsLi 42 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLL 42 (200)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45677899999998644
No 445
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=36.10 E-value=10 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=4.5
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..|+|||.-+
T Consensus 20 ~~~i~v~G~~~~GKssli 37 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALI 37 (208)
T ss_dssp EEEEEEC-----------
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345777899999999755
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=36.03 E-value=16 Score=23.39 Aligned_cols=16 Identities=50% Similarity=0.686 Sum_probs=11.7
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+.--|.+|||||..+
T Consensus 22 ~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYL 37 (230)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3444599999998654
No 447
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=35.99 E-value=13 Score=22.59 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 23 ~ki~vvG~~~~GKSsli 39 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFL 39 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45677899999998644
No 448
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=35.96 E-value=13 Score=22.42 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=12.9
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 15 ~ki~vvG~~~~GKssL~ 31 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNL 31 (198)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34677899999998533
No 449
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=35.86 E-value=12 Score=22.65 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=13.8
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|.+++|||.-+
T Consensus 8 ~~ki~vvG~~~~GKSsli 25 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLV 25 (199)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred eeEEEEECCCCCcHHHHH
Confidence 345777899999998654
No 450
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=35.86 E-value=13 Score=22.60 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 18 ~ki~v~G~~~~GKSsl~ 34 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTII 34 (199)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677899999998644
No 451
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=35.85 E-value=13 Score=22.89 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.2
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 28 ~~ki~v~G~~~~GKSsli 45 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFL 45 (199)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 456778899999998644
No 452
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=35.77 E-value=34 Score=25.03 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=19.7
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCcccee
Q psy15017 47 DVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYT 85 (97)
Q Consensus 47 ~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T 85 (97)
..|.++-.. +.+.+..|.+. +.-..||+|||..
T Consensus 10 ~~Q~~~~~~----v~~~~~~~~~~--~~~a~TGtGKT~~ 42 (540)
T 2vl7_A 10 QWQAEKLGE----AINALKHGKTL--LLNAKPGLGKTVF 42 (540)
T ss_dssp CHHHHHHHH----HHHHHHTTCEE--EEECCTTSCHHHH
T ss_pred HHHHHHHHH----HHHHHHcCCCE--EEEcCCCCcHHHH
Confidence 345444433 33445577654 4456899999964
No 453
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=35.77 E-value=13 Score=22.72 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=14.1
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 21 ~~ki~vvG~~~vGKTsLi 38 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALT 38 (187)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCcHHHHH
Confidence 345778899999998654
No 454
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=35.73 E-value=30 Score=22.57 Aligned_cols=19 Identities=37% Similarity=0.607 Sum_probs=14.8
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....|...|.+|+|||..+
T Consensus 35 ~~~~I~lvG~~g~GKSSLi 53 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTV 53 (262)
T ss_dssp CEEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456778899999998654
No 455
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=35.72 E-value=11 Score=27.49 Aligned_cols=15 Identities=53% Similarity=0.680 Sum_probs=12.5
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.++-+|.+|+|||..
T Consensus 52 ~iLl~GppGtGKT~l 66 (444)
T 1g41_A 52 NILMIGPTGVGKTEI 66 (444)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 477799999999864
No 456
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=35.61 E-value=12 Score=22.77 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.0
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 23 ~~ki~vvG~~~~GKSsli 40 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIV 40 (192)
T ss_dssp EEEEEEEECTTSSHHHHH
T ss_pred ceEEEEECcCCCCHHHHH
Confidence 345777899999998654
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=35.53 E-value=13 Score=22.61 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=13.7
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 22 ~~ki~v~G~~~~GKSsli 39 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFV 39 (188)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ccEEEEECCCCCCHHHHH
Confidence 345677899999998644
No 458
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=35.41 E-value=20 Score=25.18 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=19.5
Q ss_pred HHHHHHHhC--CC--CEEEEeeccCCCccceee
Q psy15017 58 ASLVAGSLE--GY--NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 58 ~p~v~~~~~--g~--n~~v~ayG~t~sGKt~T~ 86 (97)
.+-++.++. |. ...+.-||..|+|||...
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtla 91 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLA 91 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHH
Confidence 345667775 33 335566899999999653
No 459
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=35.32 E-value=13 Score=22.66 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.0
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
-|...|..++|||.-
T Consensus 25 ki~v~G~~~~GKSsl 39 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSF 39 (191)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 466789999999853
No 460
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=35.14 E-value=5.1 Score=28.13 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=11.6
Q ss_pred EeeccCCCccceee
Q psy15017 73 LAYGQTGSGKTYTM 86 (97)
Q Consensus 73 ~ayG~t~sGKt~T~ 86 (97)
.-.|.+|||||..|
T Consensus 35 ~llGpnGsGKSTLL 48 (353)
T 1oxx_K 35 GILGPSGAGKTTFM 48 (353)
T ss_dssp EEECSCHHHHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999876
No 461
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=35.00 E-value=13 Score=22.79 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||..+
T Consensus 24 ~ki~~vG~~~vGKSsli 40 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLL 40 (190)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677899999998654
No 462
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=34.97 E-value=15 Score=26.83 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=13.5
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..++.-.|.+|||||..+
T Consensus 39 Ge~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFS 56 (525)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 335556799999999754
No 463
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=34.97 E-value=13 Score=22.67 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=13.7
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..|+|||.-+
T Consensus 20 ~~ki~~~G~~~~GKssl~ 37 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLV 37 (201)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345677899999998654
No 464
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.91 E-value=13 Score=22.81 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 21 ~~i~v~G~~~~GKSsli 37 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLL 37 (213)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999998644
No 465
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=34.81 E-value=13 Score=23.46 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=14.6
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
....|...|.+|+|||..+
T Consensus 28 ~~~kI~vvG~~~vGKSsLi 46 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFM 46 (228)
T ss_dssp TSEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456778899999998644
No 466
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=34.54 E-value=13 Score=23.00 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=14.4
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
...-|...|..++|||.-+
T Consensus 24 ~~~ki~vvG~~~~GKSsli 42 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLL 42 (207)
T ss_dssp EEEEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECcCCCCHHHHH
Confidence 3446778899999998644
No 467
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=34.16 E-value=13 Score=23.17 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 16 ~ki~v~G~~~~GKSsli 32 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFV 32 (221)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999998544
No 468
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=34.05 E-value=10 Score=25.66 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.6
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
+.-.|.+|+|||..+
T Consensus 168 ~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 168 CILAGPSGVGKSSIL 182 (302)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334699999998765
No 469
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=33.57 E-value=17 Score=23.81 Aligned_cols=17 Identities=41% Similarity=0.386 Sum_probs=12.0
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
...|.-.|..|||||.-
T Consensus 21 ~~~i~~~G~~g~GKst~ 37 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQ 37 (223)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 33455569999999753
No 470
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=33.35 E-value=14 Score=22.67 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=13.0
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 25 ~ki~vvG~~~~GKSsli 41 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLA 41 (201)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCcCHHHHH
Confidence 35677899999997543
No 471
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=33.24 E-value=16 Score=22.44 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=14.3
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
...-|...|..++|||.-+
T Consensus 24 ~~~ki~vvG~~~~GKSsli 42 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLL 42 (201)
T ss_dssp EEEEEEEEESTTSSHHHHH
T ss_pred cceEEEEECCCCCCHHHHH
Confidence 3445777899999998544
No 472
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=33.03 E-value=15 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 24 ~ki~~vG~~~~GKSsl~ 40 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLL 40 (194)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45777899999997543
No 473
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=33.01 E-value=15 Score=22.35 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 19 ~ki~v~G~~~~GKssli 35 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLL 35 (194)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35677899999998544
No 474
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=32.92 E-value=15 Score=22.40 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=14.3
Q ss_pred CCEEEEeeccCCCccceee
Q psy15017 68 YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~ 86 (97)
...-|...|..|+|||.-+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~ 37 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALV 37 (184)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3445777899999998644
No 475
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=32.77 E-value=15 Score=22.79 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=13.6
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..|+|||.-+
T Consensus 11 ~~ki~vvG~~~~GKSsli 28 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYI 28 (218)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred ccEEEEECCCCCCHHHHH
Confidence 345667899999998644
No 476
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=32.77 E-value=10 Score=24.75 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=14.1
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
...|.-.|.+|+|||..+
T Consensus 21 ~l~I~lvG~~g~GKSSli 38 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATG 38 (247)
T ss_dssp EEEEEEESSTTSSHHHHH
T ss_pred ceEEEEECCCCCcHHHHH
Confidence 445677899999998655
No 477
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=32.65 E-value=15 Score=22.99 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=13.9
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..|+|||.-+
T Consensus 34 ~~ki~vvG~~~vGKSsli 51 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLL 51 (214)
T ss_dssp EEEEEEEECTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 345777899999998654
No 478
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=32.65 E-value=17 Score=23.77 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=11.6
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
.|.--|.+|||||..
T Consensus 29 ~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 29 VITVDGPSGAGKGTL 43 (252)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 455569999999854
No 479
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=32.62 E-value=15 Score=22.53 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=13.0
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
..-|...|..++|||.-
T Consensus 20 ~~ki~~vG~~~vGKTsL 36 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSI 36 (196)
T ss_dssp CCEEEEEESTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 33566789999999854
No 480
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=32.53 E-value=24 Score=23.73 Aligned_cols=27 Identities=4% Similarity=0.025 Sum_probs=18.0
Q ss_pred HHHHHHhCC---CCEEEEeeccCCCccceee
Q psy15017 59 SLVAGSLEG---YNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T~ 86 (97)
|-++.++.| ...+++..|.+++||+ |+
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~-~l 37 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGK-DI 37 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHH-HH
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHH-HH
Confidence 456777765 3556666777777877 54
No 481
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=32.50 E-value=17 Score=23.98 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.2
Q ss_pred EEEEeeccCCCcccee
Q psy15017 70 ATILAYGQTGSGKTYT 85 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T 85 (97)
..+.-.|.+|||||..
T Consensus 10 ~~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSV 25 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3566679999999853
No 482
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=32.45 E-value=53 Score=23.64 Aligned_cols=16 Identities=44% Similarity=0.472 Sum_probs=12.1
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+...|.+|+|||.++
T Consensus 100 vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3444499999999875
No 483
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=32.31 E-value=13 Score=22.18 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.4
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
-|...|..++|||.-+
T Consensus 9 ki~~vG~~~vGKTsli 24 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLI 24 (178)
T ss_dssp EEEEECCGGGCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998544
No 484
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=32.29 E-value=4.8 Score=26.52 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=10.1
Q ss_pred eccCCCccceee
Q psy15017 75 YGQTGSGKTYTM 86 (97)
Q Consensus 75 yG~t~sGKt~T~ 86 (97)
.|.+|||||..|
T Consensus 33 ~GpnGsGKSTll 44 (227)
T 1qhl_A 33 SGGNGAGKSTTM 44 (227)
T ss_dssp HSCCSHHHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 499999998765
No 485
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=32.21 E-value=12 Score=26.61 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=10.7
Q ss_pred eeccCCCccceee
Q psy15017 74 AYGQTGSGKTYTM 86 (97)
Q Consensus 74 ayG~t~sGKt~T~ 86 (97)
-.|.+|||||..+
T Consensus 59 IiGpnGaGKSTLl 71 (366)
T 3tui_C 59 VIGASGAGKSTLI 71 (366)
T ss_dssp EECCTTSSHHHHH
T ss_pred EEcCCCchHHHHH
Confidence 4699999999665
No 486
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=38.23 E-value=9.7 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=14.7
Q ss_pred CCCEEEEeeccCCCccceee
Q psy15017 67 GYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 67 g~n~~v~ayG~t~sGKt~T~ 86 (97)
....-|...|..|+|||.-+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli 47 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLL 47 (204)
Confidence 34445667899999999655
No 487
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=32.00 E-value=12 Score=25.41 Aligned_cols=16 Identities=44% Similarity=0.472 Sum_probs=12.0
Q ss_pred EEEeeccCCCccceee
Q psy15017 71 TILAYGQTGSGKTYTM 86 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T~ 86 (97)
.+...|.+|+|||.++
T Consensus 100 ~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTA 115 (295)
T ss_dssp EEEEECCTTTTHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4444499999999765
No 488
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=31.97 E-value=10 Score=30.55 Aligned_cols=14 Identities=50% Similarity=0.510 Sum_probs=11.6
Q ss_pred eeccCCCccceeec
Q psy15017 74 AYGQTGSGKTYTMG 87 (97)
Q Consensus 74 ayG~t~sGKt~T~~ 87 (97)
....||||||.|++
T Consensus 305 i~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 305 IWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEECTTSSHHHHHH
T ss_pred EEecCCCCHHHHHH
Confidence 46789999999973
No 489
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=31.94 E-value=15 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=14.3
Q ss_pred CCCCEEEEeeccCCCccceee
Q psy15017 66 EGYNATILAYGQTGSGKTYTM 86 (97)
Q Consensus 66 ~g~n~~v~ayG~t~sGKt~T~ 86 (97)
.....-|...|..|+|||.-+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi 47 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLL 47 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHH
Confidence 344556778899999998544
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=31.45 E-value=16 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=14.0
Q ss_pred CEEEEeeccCCCccceee
Q psy15017 69 NATILAYGQTGSGKTYTM 86 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T~ 86 (97)
..-|...|..++|||.-+
T Consensus 28 ~~ki~vvG~~~vGKSsLi 45 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALL 45 (205)
T ss_dssp EEEEEEEESTTSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 345778899999998543
No 491
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=31.27 E-value=18 Score=23.43 Aligned_cols=16 Identities=38% Similarity=0.301 Sum_probs=12.3
Q ss_pred EEEEeeccCCCcccee
Q psy15017 70 ATILAYGQTGSGKTYT 85 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T 85 (97)
-.|.--|..|||||..
T Consensus 23 ~iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3566679999999853
No 492
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=31.07 E-value=17 Score=22.56 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=13.4
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 26 ~ki~vvG~~~~GKSsLi 42 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFL 42 (217)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45777899999998643
No 493
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=31.00 E-value=16 Score=22.73 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=13.5
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 27 ~ki~lvG~~~vGKSsLi 43 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLV 43 (201)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45677899999998654
No 494
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=30.57 E-value=17 Score=22.37 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=13.2
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..|+|||.-+
T Consensus 24 ~ki~vvG~~~vGKSsLi 40 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLA 40 (195)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45677899999998644
No 495
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=30.46 E-value=19 Score=25.51 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=11.4
Q ss_pred EEeeccCCCccceee
Q psy15017 72 ILAYGQTGSGKTYTM 86 (97)
Q Consensus 72 v~ayG~t~sGKt~T~ 86 (97)
..-+|.+|+|||-.|
T Consensus 29 ~~i~G~nG~GKstll 43 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMM 43 (430)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 335799999998644
No 496
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=30.25 E-value=9.1 Score=24.81 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.8
Q ss_pred CCEEEEeeccCCCccceeecC
Q psy15017 68 YNATILAYGQTGSGKTYTMGT 88 (97)
Q Consensus 68 ~n~~v~ayG~t~sGKt~T~~G 88 (97)
..+.|..|+-+|.|||+.-+|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 356789999999999986544
No 497
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=30.09 E-value=19 Score=26.96 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=12.2
Q ss_pred EEEeeccCCCcccee
Q psy15017 71 TILAYGQTGSGKTYT 85 (97)
Q Consensus 71 ~v~ayG~t~sGKt~T 85 (97)
+++-+|.+|+|||.+
T Consensus 215 ~~~ffGlSGtGKTTL 229 (524)
T 1ii2_A 215 VTVFFGLSGTGKTTL 229 (524)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEccCCcchhhh
Confidence 566779999999955
No 498
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=30.02 E-value=17 Score=25.48 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=13.7
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
-.=|+..|..+||||..
T Consensus 33 ~~killlG~~~SGKST~ 49 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTF 49 (362)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred ccEEEEECCCCCcHHHH
Confidence 44578899999999864
No 499
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=29.80 E-value=25 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=12.7
Q ss_pred CEEEEeeccCCCcccee
Q psy15017 69 NATILAYGQTGSGKTYT 85 (97)
Q Consensus 69 n~~v~ayG~t~sGKt~T 85 (97)
...|.--|..|||||.-
T Consensus 24 ~~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTF 40 (263)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34566679999999854
No 500
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=29.75 E-value=18 Score=22.33 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=13.3
Q ss_pred EEEEeeccCCCccceee
Q psy15017 70 ATILAYGQTGSGKTYTM 86 (97)
Q Consensus 70 ~~v~ayG~t~sGKt~T~ 86 (97)
.-|...|..++|||.-+
T Consensus 10 ~ki~i~G~~~~GKTsli 26 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCML 26 (212)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45677899999998644
Done!