RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15017
(97 letters)
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 146 bits (371), Expect = 6e-45
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
++RP +E++ + C V PG +VTLG D+ F F V Q +Y+ C L
Sbjct: 16 ALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPL 75
Query: 61 VAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPIS 95
+ EG+NAT+ AYGQTGSGKTYTMG + + +
Sbjct: 76 LEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLL 110
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 136 bits (344), Expect = 8e-41
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
+ P V F + + + F FD+ F Q +Y+ L
Sbjct: 27 AVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPL 86
Query: 61 VAGSLEGYNATILAYGQTGSGKTYTMGTG 89
V LEG+ T LAYGQTG+GK+Y+MG
Sbjct: 87 VDKLLEGFQCTALAYGQTGTGKSYSMGMT 115
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 132 bits (335), Expect = 2e-39
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------GADKSFTFDYVFDMADVQTTI 52
+ + RP + E P +V++ + K++TFD VF + Q +
Sbjct: 13 VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDV 72
Query: 53 YELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
Y ++ + GYN TI AYGQTG+GKT+TM
Sbjct: 73 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 113
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 131 bits (332), Expect = 8e-39
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYEL 55
++RP ++RE V VT K FTFD F Q +Y +
Sbjct: 28 YVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSV 87
Query: 56 CAASLVAGSLEGYNATILAYGQTGSGKTYTMGTG 89
+ L+ L GYN T+ AYGQTG+GKT+TM
Sbjct: 88 VVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGN 121
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 129 bits (327), Expect = 3e-38
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-ADKSFTFDYVFDMADVQTTIYELCAAS 59
+C+ RP + E + + + A K + FD VF Q +Y A S
Sbjct: 16 VCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKS 75
Query: 60 LVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISR 96
+V L GYN TI AYGQT SGKT+TM + +
Sbjct: 76 IVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQ 112
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 124 bits (314), Expect = 1e-36
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
MC+ RP + EV + GE V + K + FD VF + Q +Y CA +
Sbjct: 12 MCRFRPLNESEVNRGDKYIAKF-QGEDTVVIA-SKPYAFDRVFQSSTSQEQVYNDCAKKI 69
Query: 61 VAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISR 96
V LEGYN TI AYGQT SGKT+TM P
Sbjct: 70 VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 120 bits (304), Expect = 9e-35
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTI 52
+ + RP + +E V QV++ K+FTFD V+D Q +
Sbjct: 26 VVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFEL 85
Query: 53 YELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISR 96
Y+ LV L+G+N TI AYGQTG+GKTYTM P R
Sbjct: 86 YDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKR 129
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 119 bits (301), Expect = 2e-34
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-GADKSFTFDYVFDMADVQTTIYELCAAS 59
++RP ++RE + + KSF FD VF + +YE AA
Sbjct: 9 CVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAP 68
Query: 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86
++ +++GYN TI AYGQT SGKTYTM
Sbjct: 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 120 bits (302), Expect = 3e-34
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYEL 55
++RP C + FD + Q IY
Sbjct: 26 AVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAG 85
Query: 56 CAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
++ LEG NA++LAYG TG+GKT+TM
Sbjct: 86 SVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 116 bits (292), Expect = 4e-33
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--ADKSFTFDYVFDMADVQTTIYELCAA 58
+ + RPQ+ E+ + + A SFTFD VFDM+ Q+ I++
Sbjct: 11 VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIK 70
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM-GTGTFSPISR 96
V L GYN T+ AYGQTG+GK+YTM GT P R
Sbjct: 71 PTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGR 109
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 116 bits (292), Expect = 6e-33
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGAD-----KSFTFDYVFDMADV------- 48
++RP ++RE+ + ++ + KSF+FDY +
Sbjct: 9 AVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYA 68
Query: 49 -QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Q +Y ++ + EGYN I AYGQTG+GK+YTM
Sbjct: 69 SQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 115 bits (290), Expect = 8e-33
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-------------ADKSFTFDYVFDMAD 47
+ + RP +ARE + + QV + ++FTFD V+D
Sbjct: 9 IVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS 68
Query: 48 VQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
I++ L+ LEG+N+TI AYGQTG+GKT+TMG
Sbjct: 69 CNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 112 bits (283), Expect = 8e-32
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 24/110 (21%)
Query: 4 IRPQSAREVIDMCRVCTFVT--------PGEPQVTL---------------GADKSFTFD 40
+RP++ +E V P + +V+ D F FD
Sbjct: 18 VRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFD 77
Query: 41 YVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTG 89
VFD Q+ ++E ++ L GYN T+LAYG TG+GKT+TM G+
Sbjct: 78 AVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA 127
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 113 bits (285), Expect = 9e-32
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 4 IRPQSAREVIDMCRVCTFVTPGEPQVTL------------GADKSFTFDYVFDMADVQTT 51
RP + +E+ V P + + + +++F FD+ FD
Sbjct: 79 KRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV 137
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
+Y A LV EG AT AYGQTGSGKT+TMG G S
Sbjct: 138 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG-GDLSG 178
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 112 bits (282), Expect = 2e-31
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 4 IRPQSAREVIDMCRVCTFVTPGEPQVTL------------GADKSFTFDYVFDMADVQTT 51
RP + +E+ + P + + + +++F FD+ FD
Sbjct: 59 KRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV 117
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
+Y A LV EG AT AYGQTGSGKT+TMG G S
Sbjct: 118 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG-GDLSG 158
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 111 bits (280), Expect = 7e-31
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 27/113 (23%)
Query: 4 IRPQSAREVIDMCRVCTFVTPGEPQVTL-------------------GADKSFTFDYVFD 44
+R RE+ + P + +L +KSFTFD F
Sbjct: 46 VRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFW 105
Query: 45 MADV-------QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTG 89
+ Q +Y+ + + EGY+ I AYGQTGSGK+YTM GT
Sbjct: 106 SHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP 158
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 110 bits (277), Expect = 7e-31
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 1 MCKIRPQSARE-------VIDMCRVCTFVTPGEPQVTLGA----DKSFTFDYVFDMADV- 48
+IRP + RE V+D+ + P ++ G K F +D+ F D
Sbjct: 6 AVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDES 65
Query: 49 -------QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTG 89
Q +++ +++ + +GYNA I AYGQTGSGK+YTM GT
Sbjct: 66 VKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA 114
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum}
SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 110 bits (277), Expect = 9e-31
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL---GADKSFTFDYVFDMADVQTTIYELCA 57
C++RP +E+I R L K +D VFD Q ++E
Sbjct: 10 YCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DT 68
Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
LV +++GYN I AYGQTGSGKT+T+
Sbjct: 69 KYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 107 bits (270), Expect = 1e-29
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
+IRP + + F FD +FD D
Sbjct: 64 YLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 123
Query: 51 TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 124 DVFK-EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM 158
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 105 bits (265), Expect = 3e-29
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 1 MCKIRPQSARE-----VIDMCRVCTFVTPGEPQVTL----GADKSFTFDYVFDMADVQTT 51
+++P D R + + + D SF D V A Q
Sbjct: 28 FVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHDAS-QDL 86
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISR 96
+YE A +V+ +L+GYN TI+ YGQTG+GKTYTM T + R
Sbjct: 87 VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 131
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 105 bits (264), Expect = 4e-29
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYEL 55
+ ++RP + + + + G SF D VF Q +++
Sbjct: 9 IARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQ- 67
Query: 56 CAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+LV ++G+N I AYGQTG+GKTYTM
Sbjct: 68 EVQALVTSCIDGFNVCIFAYGQTGAGKTYTM 98
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 105 bits (263), Expect = 8e-29
Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTL------------GADKSFTFDYVFDMADVQ 49
+ RP S E V + + F D VFD
Sbjct: 6 VRKRPLSELEKKKKDSDIITV-KNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDN 64
Query: 50 TTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTMGTGTFSP 93
T+YE L+ E G + AYGQTGSGKTYTM G+
Sbjct: 65 FTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML-GSQPY 108
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 104 bits (262), Expect = 1e-28
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
C+IRP + + F FD +FD D
Sbjct: 8 YCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 67
Query: 51 TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+++ LV SL+GYN I AYGQTGSGKT+TM
Sbjct: 68 DVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 103 bits (260), Expect = 2e-28
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL---------GADKSFTFDYVFDMADVQTT 51
C++RP E DM + +F FD +F+ +
Sbjct: 10 YCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKE 69
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+E LV SL+GYN I AYGQTGSGKTYTM
Sbjct: 70 IFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 104 bits (262), Expect = 2e-28
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------GADKSFTFDYVFDMADVQTTI 52
C+IRP E MC T+ ++ + F+FD VF Q+ I
Sbjct: 64 FCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI 123
Query: 53 YELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+E + L+ +L+GYN I AYGQTGSGKTYTM
Sbjct: 124 FE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 97.7 bits (244), Expect = 5e-26
Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------------------GADKSFT 38
C++RP E + F + F+
Sbjct: 27 FCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFS 86
Query: 39 FDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTGTFSPISR 96
FD VF Q ++E A LV +L+GY I AYGQTGSGKT+TM G P
Sbjct: 87 FDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLE 144
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 34.5 bits (80), Expect = 0.002
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
A LV +G L G TG+GKT TM
Sbjct: 18 AGLVEALRDGERFVTL-LGATGTGKTVTM 45
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary
complex, hydrolase/DNA complex; HET: ADP; 2.10A
{Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B
1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
LV G EG L G TG+GKT+T+
Sbjct: 22 EKLVKGIQEGKKHQTL-LGATGTGKTFTV 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 33.1 bits (76), Expect = 0.006
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTY 84
+ D + +V L V + G G GKT+
Sbjct: 5 WNANLDT-YHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 31.3 bits (71), Expect = 0.030
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
+ D+ + V + YG G GK+Y +
Sbjct: 119 RHIHLSD-IDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.046
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 36/110 (32%)
Query: 5 RPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQ---------TTIYEL 55
+ T ++ E V ++ +Y F M+ ++ T +Y
Sbjct: 60 AVSGTLRLFW-----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 56 CAASLVAGS--LEGYNAT--------------------ILAYGQTGSGKT 83
L + YN + +L G GSGKT
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.0 bits (68), Expect = 0.071
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
+ V D + + + +G G GKTY +
Sbjct: 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 29.9 bits (68), Expect = 0.085
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 20/74 (27%)
Query: 22 VTPGEP-QVTLGA--DKSFTFDYVFDMADVQTTIYE------LCAASLVAGSLEGYNATI 72
VT P Q++L TF + Y L A A S +G A
Sbjct: 7 VTQHPPLQLSLPVHLPDDETFT----------SYYPAAGNDELIGALKSAASGDGVQAIY 56
Query: 73 LAYGQTGSGKTYTM 86
L +G SG+T+ +
Sbjct: 57 L-WGPVKSGRTHLI 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 29.9 bits (67), Expect = 0.11
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 78 TGSGKTYTM 86
TGSGKT T
Sbjct: 309 TGSGKTLTS 317
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 0.38
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 62 AGSLEGYNATILAYGQTGSGKTYTM 86
G N TIL + G+GK++T
Sbjct: 30 GGDRTNSNWTIL--AKPGAGKSFTA 52
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A
{Homo sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 27.2 bits (60), Expect = 0.56
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 7 QSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAAS 59
Q+ + + M C + G+ + D + + LCA S
Sbjct: 43 QNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAES 95
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 27.5 bits (62), Expect = 0.70
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 65 LEGYNATILAYGQTGSGKTYTMGTGTFS-PI-SRI 97
L ++ Q+G+GK T F+ + SR+
Sbjct: 154 LSNPPRNMIGQSQSGTGK-----TAAFALTMLSRV 183
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 27.1 bits (60), Expect = 0.74
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 60 LVAGSLEGYNATILAYGQTGSGKTYT 85
+ +LEG N I+ TGSGKT
Sbjct: 41 VAQPALEGKN--IIICLPTGSGKTRV 64
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 26.8 bits (60), Expect = 0.96
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 20 TFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
T V+L DYV M + Q IY + A S S LE
Sbjct: 177 THTDSSAQTVSLE-------DYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRK 224
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 27.0 bits (60), Expect = 1.0
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 65 LEGYNATILAYGQTGSGKT 83
++G + T++A TG GKT
Sbjct: 34 VQGKSFTMVA--PTGVGKT 50
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 26.8 bits (60), Expect = 1.2
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 20 TFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
T V+L DYV M + Q IY + A S A
Sbjct: 405 THTDSSAQTVSLE-------DYVSRMKEGQEKIYYITADSYAA 440
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 26.7 bits (58), Expect = 1.3
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 63 GSL-EGYNATILAYGQTGSGKT 83
G L G+ T++ G++G GK+
Sbjct: 1 GPLGSGFEFTLMVVGESGLGKS 22
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 26.5 bits (59), Expect = 1.4
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 30 TLGADKSFTF-DYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
T ++ T DYV M Q +IY + S + S +E
Sbjct: 194 TESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARR 239
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription
regulation, antagonist of transcription anti-
termination; HET: MSE; 1.68A {Bacteroides uniformis
atcc 8492}
Length = 162
Score = 26.4 bits (58), Expect = 1.5
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 15/60 (25%)
Query: 31 LGADKSFTFDYVFDMADVQTTIYELCA-------------ASLVAGSLEGYNATILAYGQ 77
L + S Y + + + +L L GYNATI G
Sbjct: 22 LDTNGSPI--YSDEFCRLNKEVLTRSDSLFSEQSSDIEEEGNLCLALLMGYNATIYDNGD 79
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 26.4 bits (59), Expect = 1.5
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 20 TFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
T V+L DYV M + Q IY + A S A
Sbjct: 405 THTDSSAQTVSLE-------DYVSRMKEGQEKIYYITADSYAA 440
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 26.5 bits (57), Expect = 1.5
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 60 LVAGSLEGYNATILAYGQTGSGKTY 84
L +++G N + TG GKT+
Sbjct: 21 LALPAMKGKN--TIICAPTGCGKTF 43
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 26.6 bits (58), Expect = 1.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 58 ASLVAGSLEGYNAT-ILAYGQTGSGKTYTM 86
A + ++ L G TG+GKT+
Sbjct: 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat
iron-sulfur cluster, biosynthetic protein; 2.10A
{Pyrococcus horikoshii} PDB: 3lzc_A
Length = 378
Score = 26.4 bits (57), Expect = 1.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 22 VTPGEPQVTLGADKSFTFDYV 42
+TP E ++ LG + + FD +
Sbjct: 339 LTPKEVEILLGLREEYEFDEI 359
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 26.2 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 58 ASLVAGSLEGYNAT-ILAYGQTGSGKTYTM 86
AS++A I YG TG+GKT +
Sbjct: 33 ASILAPLYREEKPNNIFIYGLTGTGKTAVV 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 26.4 bits (57), Expect = 1.7
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 50 TTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
T I+ SL++ N S K +
Sbjct: 30 TRIFLPIYDSLMSSQ----NKLFYITNADDSTKFQLV 62
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 26.3 bits (58), Expect = 1.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 65 LEGYNATILAYGQTGSGKT 83
L + ++A +TG+GKT
Sbjct: 107 LSSEDHDVIARAKTGTGKT 125
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 26.2 bits (57), Expect = 1.8
Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 70 ATILAY-GQTGSGKTYTM 86
A I G GSGKT M
Sbjct: 5 AEICLITGTPGSGKTLKM 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily
2 RNA helicase, ATP and dsRNA binding antiviral
signalling pathway; 3.00A {Anas platyrhynchos} PDB:
4a36_A*
Length = 556
Score = 26.1 bits (56), Expect = 2.1
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 60 LVAGSLEGYNATILAYGQTGSGKTY 84
L ++ G N L TGSGKT+
Sbjct: 15 LAQPAINGKN--ALICAPTGSGKTF 37
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 26.1 bits (58), Expect = 2.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 30 TLGADKSFTF-DYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
T D+ + DYV M + Q IY + SL V S L+ A
Sbjct: 176 TKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKA 221
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 25.9 bits (56), Expect = 2.2
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 72 ILAYGQTGSGKTYTM 86
G+ G+GKT T+
Sbjct: 47 ATLLGRPGTGKTVTL 61
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system,
THER bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 25.8 bits (57), Expect = 2.2
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 55 LCAASLVAGSLEGYNATILAYGQTGSGKTYTMGT-GTFSP 93
+ S + G ++ + K +GT F+P
Sbjct: 15 VPRGSHMGGGRSTETSSSSGGDGGATKKKVVVGTDAAFAP 54
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 25.7 bits (57), Expect = 2.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 72 ILAYGQTGSGKT 83
+LA +TGSGKT
Sbjct: 94 LLAAAKTGSGKT 105
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 25.9 bits (57), Expect = 2.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 65 LEGYNATILAYGQTGSGKT 83
L + ++A +TG+GKT
Sbjct: 56 LSSEDHDVIARAKTGTGKT 74
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 26.0 bits (58), Expect = 2.3
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 40 DYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
DYV M + Q IY + SL V S L+ A
Sbjct: 189 DYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKA 223
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 25.7 bits (57), Expect = 2.5
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 30 TLGADKSFTF-DYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
+ + YV M + Q IY + +S S +E
Sbjct: 427 SHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLK 472
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 25.9 bits (56), Expect = 2.6
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 67 GYNATILAYGQTGSGKT 83
G+ T++ G++G GK+
Sbjct: 16 GFEFTLMVVGESGLGKS 32
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase;
HET: ANP; 2.14A {Mus musculus}
Length = 555
Score = 26.0 bits (56), Expect = 2.6
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 60 LVAGSLEGYNATILAYGQTGSGKTY 84
L + +G N + TG GKT+
Sbjct: 12 LALPAKKGKN--TIICAPTGCGKTF 34
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 25.7 bits (57), Expect = 2.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 72 ILAYGQTGSGKTY 84
IL G TGSGKT
Sbjct: 75 ILLIGPTGSGKTL 87
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 25.6 bits (57), Expect = 2.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 72 ILAYGQTGSGKTY 84
IL G TGSGKT
Sbjct: 54 ILLIGPTGSGKTL 66
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 25.6 bits (56), Expect = 2.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 69 NATILAYGQTGSGKTYTM 86
+L G TG+GK+ +
Sbjct: 53 PRHLLVNGATGTGKSVLL 70
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA
synthesis, NUCL binding, magnesium; HET: DNA DOC TTD
DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A*
3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A*
1jih_A*
Length = 520
Score = 25.6 bits (55), Expect = 3.0
Identities = 7/77 (9%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 22 VTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSG 81
++ ++ ++K+ + D + + CA + ++ Y +
Sbjct: 393 LSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAE--LTSRIQDLEQ---EYNKIVIP 447
Query: 82 KTYTMG--TGTFSPISR 96
+T ++ T ++ +
Sbjct: 448 RTVSISLKTKSYEVYRK 464
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 25.6 bits (57), Expect = 3.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 30 TLGADKSFTF-DYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
T D+ + DYV M + Q IY + SL V S L+ A
Sbjct: 176 TKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKA 221
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC,
hydrolase; HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 25.3 bits (56), Expect = 3.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 72 ILAYGQTGSGKT 83
+L +TGSGKT
Sbjct: 65 VLGAAKTGSGKT 76
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 25.2 bits (56), Expect = 3.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 72 ILAYGQTGSGKT 83
+LA TGSGKT
Sbjct: 69 LLASAPTGSGKT 80
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 25.0 bits (55), Expect = 4.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 72 ILAYGQTGSGKT 83
I+ +TGSGKT
Sbjct: 83 IIGLAETGSGKT 94
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication,
DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 25.1 bits (54), Expect = 4.1
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 72 ILAYGQTGSGKT 83
L TG GKT
Sbjct: 26 CLIVLPTGLGKT 37
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 25.1 bits (55), Expect = 4.2
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 51 TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
T+ A L ++ + G+T SGKT T
Sbjct: 244 TVPSGVLAYLWLAIEHKFS--AIVVGETASGKT-TT 276
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 24.8 bits (55), Expect = 4.6
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 25 GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
G+ +L +YV M + Q +IY + S VA S +E
Sbjct: 181 GDEMTSLS-------EYVSRMKETQKSIYYITGESKEQVANSAFVERVRK 223
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 25.2 bits (56), Expect = 4.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 77 QTGSGKT 83
QTGSGKT
Sbjct: 60 QTGSGKT 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 25.3 bits (54), Expect = 4.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 72 ILAYGQTGSGKTY 84
I G T SGKTY
Sbjct: 158 IFHSGPTNSGKTY 170
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 25.0 bits (55), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 71 TILAYGQTGSGKTYTM 86
I+ G+TGSGKT T+
Sbjct: 177 VIVVAGETGSGKT-TL 191
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 24.9 bits (55), Expect = 5.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 ILAYGQTGSGKTYTM 86
IL G TGSGK+ T+
Sbjct: 139 ILVTGPTGSGKSTTI 153
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 24.8 bits (55), Expect = 5.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 72 ILAYGQTGSGKTYT 85
IL G TGSGK+ T
Sbjct: 170 ILVTGPTGSGKSTT 183
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 24.8 bits (55), Expect = 5.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 72 ILAYGQTGSGKTYTM 86
+L G TGSGK+ T+
Sbjct: 126 VLVTGPTGSGKSTTL 140
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 24.7 bits (55), Expect = 5.2
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 45 MADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGK 82
+ +++ I +A S A +L G++G+GK
Sbjct: 138 ILEIKRLI------PKIAKS----KAPVLITGESGTGK 165
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 25.0 bits (55), Expect = 5.2
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 33 ADKSFTF-DYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKT 83
+ ++ + E +++ G G N ++ G TGSGKT
Sbjct: 136 SKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKN--VIVCGGTGSGKT 185
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 24.8 bits (55), Expect = 5.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 77 QTGSGKT 83
QTGSGKT
Sbjct: 101 QTGSGKT 107
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 24.8 bits (55), Expect = 5.4
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 65 LEGYNATILAYGQTGSGKT 83
L G + ++ QTG+GKT
Sbjct: 39 LRGES--MVGQSQTGTGKT 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 24.4 bits (54), Expect = 5.9
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 69 NATILAYGQTGSGKT 83
+ + YG G+G+
Sbjct: 24 DIAVWLYGAPGTGRM 38
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 24.5 bits (54), Expect = 6.2
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 25 GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL--VAGS--LEGYNA 70
G+ + L Y+ +M + Q IY + + S LE A
Sbjct: 184 GDKKTDLD-------SYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKA 226
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 24.8 bits (54), Expect = 6.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 72 ILAYGQTGSGKT 83
IL YG G+GKT
Sbjct: 241 ILLYGPPGTGKT 252
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 24.5 bits (53), Expect = 6.6
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 21 FVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYEL---CAASLVAGSLEGYNATILAYGQ 77
T + + + + V + + L C S+ ILA G
Sbjct: 236 PFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI------ILATGA 289
Query: 78 TGSGKT 83
TG+GKT
Sbjct: 290 TGTGKT 295
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator,
enhancer binding protein, PSPF; 1.7A {Escherichia coli}
PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 24.4 bits (54), Expect = 6.7
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 45 MADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGK 82
+V + S +A + +L G+ G+GK
Sbjct: 15 FLEVLEQV------SHLAPL----DKPVLIIGERGTGK 42
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two
component system, AAA domain, NTRC family, DNA-binding;
HET: ATP; 3.0A {Salmonella typhimurium}
Length = 304
Score = 24.3 bits (54), Expect = 7.2
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGK 82
+ ++VA S +AT+L +G +G+GK
Sbjct: 14 LLNE--IAMVAPS----DATVLIHGDSGTGK 38
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics,
NPPSFA, N project on protein structural and functional
analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 24.4 bits (54), Expect = 7.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 77 QTGSGKT 83
QTGSGKT
Sbjct: 68 QTGSGKT 74
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 24.5 bits (54), Expect = 7.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 ILAYGQTGSGKTYTM 86
IL G TGSGK+ T+
Sbjct: 28 ILVTGPTGSGKSTTI 42
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 24.3 bits (54), Expect = 7.7
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 45 MADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGK 82
M ++ I ++ + +L G++G GK
Sbjct: 146 MKEILEKI------KKISCA----ECPVLITGESGVGK 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,458,901
Number of extensions: 73543
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 111
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)