RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15017
(97 letters)
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 76.1 bits (186), Expect = 1e-18
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--ADKSFTFDYVFDMADVQTTIYELCAA 58
+ + RPQ+ E+ + + A SFTFD VFDM+ Q+ I++
Sbjct: 10 VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIK 69
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
V L GYN T+ AYGQTG+GK+YTM
Sbjct: 70 PTVDDILNGYNGTVFAYGQTGAGKSYTM 97
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 72.6 bits (177), Expect = 2e-17
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
MC+ RP + EV + GE V + + K + FD VF + Q +Y CA +
Sbjct: 10 MCRFRPLNESEVNRGDKYIAKF-QGEDTVVIAS-KPYAFDRVFQSSTSQEQVYNDCAKKI 67
Query: 61 VAGSLEGYNATILAYGQTGSGKTYTM 86
V LEGYN TI AYGQT SGKT+TM
Sbjct: 68 VKDVLEGYNGTIFAYGQTSSGKTHTM 93
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),
mitotic kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 72.3 bits (176), Expect = 3e-17
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------GADKSFTFDYVFDMADVQTTI 52
+ + RP + E P +V++ + K++TFD VF + Q +
Sbjct: 5 VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDV 64
Query: 53 YELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Y ++ + GYN TI AYGQTG+GKT+TM
Sbjct: 65 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 98
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 70.8 bits (172), Expect = 1e-16
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 1 MCKIRPQSAREVIDMCRVC------TFVTPGEPQVTL-----GADKSFTFDYVFDMADVQ 49
+ + RP S E + EP+ + F D VFD
Sbjct: 5 VVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDN 64
Query: 50 TTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM 86
T+YE L+ E G + AYGQTGSGKTYTM
Sbjct: 65 FTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 69.6 bits (169), Expect = 3e-16
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGAD---KSFTFDYVFDMADVQTTIYELCA 57
C++RP +E+I R L D K +D VFD Q ++E
Sbjct: 5 YCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DT 63
Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
LV +++GYN I AYGQTGSGKT+T+
Sbjct: 64 KYLVQSAVDGYNVCIFAYGQTGSGKTFTI 92
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 69.2 bits (168), Expect = 6e-16
Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
C+IRP E MC CT+ E V L + F+FD VF Q+
Sbjct: 50 FCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQS 107
Query: 51 TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+E + L+ +L+GYN I AYGQTGSGKTYTM
Sbjct: 108 DIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 142
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 68.8 bits (167), Expect = 7e-16
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 2 CKIRPQSAREVIDMCRVC--------TFVTPGEPQVTL---GADKSFTFDYVFDMADVQT 50
+ RP + +E+ V + +V L +++F FD+ FD
Sbjct: 36 VRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNE 95
Query: 51 TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
+Y A LV EG AT AYGQTGSGKT+TM
Sbjct: 96 VVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 131
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 62.7 bits (151), Expect = 1e-13
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGE-----PQVTLGADKSFTFDYVFDMADV------- 48
++RP ++RE+ + ++ P+ KSF+FDY +
Sbjct: 6 AVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYA 65
Query: 49 -QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
Q +Y ++ + EGYN I AYGQTG+GK+YTM
Sbjct: 66 SQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 104
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 54.2 bits (129), Expect = 9e-11
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
C+IRP + + F FD +FD D
Sbjct: 6 YCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 65
Query: 51 TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISRI 97
+++ LV SL+GYN I AYGQTGSGKT+TM I
Sbjct: 66 DVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPST 111
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.6 bits (60), Expect = 0.24
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 72 ILAYGQTGSGKTYT 85
L GQ GSGKT
Sbjct: 35 FLLGGQPGSGKTSL 48
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 27.0 bits (59), Expect = 0.40
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 66 EGYNATILAYGQTGSGKTYT 85
+ N +IL G++G+GKT
Sbjct: 120 DRENQSILITGESGAGKTVN 139
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 26.8 bits (59), Expect = 0.41
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 10 REVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAAS 59
R + + +L DYV M + Q IY + S
Sbjct: 165 RAALAKLLRYNSTKSVDELTSL-------TDYVTRMPEHQKNIYYITGES 207
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.4 bits (57), Expect = 0.65
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 72 ILAYGQTGSGKTYTM 86
+L G TG+GK+ +
Sbjct: 53 LLVNGATGTGKSVLL 67
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 26.2 bits (57), Expect = 0.69
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 66 EGYNATILAYGQTGSGKTYTM 86
+ N + L G++G+GKT
Sbjct: 118 DRENQSCLITGESGAGKTENT 138
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 26.2 bits (57), Expect = 0.79
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 66 EGYNATILAYGQTGSGKTYTM 86
N ++ G++G+GKT
Sbjct: 83 SQENQCVIISGESGAGKTEAS 103
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.9 bits (55), Expect = 0.83
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 65 LEGYNATILAYGQTGSGKT 83
L G +GK+
Sbjct: 25 KGLRAPITLVLGLRRTGKS 43
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 25.6 bits (56), Expect = 0.90
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 40 DYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKT 83
+YVF+ ++ I E ++ + +L G++G GK
Sbjct: 1 EYVFESPKMKE-ILEK--IKKISCA----ECPVLITGESGVGKE 37
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 25.9 bits (56), Expect = 0.99
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
A LV G G L G TG+GKT+T+
Sbjct: 21 AKLVDGLRRGVKHQTL-LGATGTGKTFTI 48
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 25.9 bits (56), Expect = 1.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 66 EGYNATILAYGQTGSGKTYTM 86
+ + +IL G++G+GKT
Sbjct: 88 DREDQSILCTGESGAGKTENT 108
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 25.9 bits (56), Expect = 1.0
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 66 EGYNATILAYGQTGSGKTYTM 86
+ N +I+ G++G+GKT +
Sbjct: 91 DERNQSIIVSGESGAGKTVSA 111
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 25.8 bits (56), Expect = 1.1
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
I+ + + + + N ++L G++G+GKT
Sbjct: 108 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 142
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 25.8 bits (56), Expect = 1.1
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 21 FVTPGEPQVTLGADKSFTFDYVFDMA---DVQTTIYE 54
F+ P +P+V A K V + A V E
Sbjct: 300 FLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAME 336
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 25.3 bits (54), Expect = 1.2
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 71 TILAYGQTGSGKTYTM 86
++L G SGKT
Sbjct: 42 SVLLEGPPHSGKTALA 57
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 25.5 bits (55), Expect = 1.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 72 ILAYGQTGSGKTY 84
IL G TG GKT
Sbjct: 52 ILMIGPTGVGKTE 64
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 24.8 bits (53), Expect = 1.8
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 72 ILAYGQTGSGKTYTM 86
IL G TG GKT
Sbjct: 52 ILMIGPTGVGKTEIA 66
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 24.9 bits (53), Expect = 1.9
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 65 LEGYNATILAYGQTGSGKT 83
TI+ G+GKT
Sbjct: 6 FRKKRLTIMD-LHPGAGKT 23
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 25.1 bits (53), Expect = 2.1
Identities = 5/8 (62%), Positives = 8/8 (100%)
Query: 79 GSGKTYTM 86
G+GKT+T+
Sbjct: 26 GTGKTFTI 33
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 24.8 bits (52), Expect = 2.3
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 33 ADKS-FTFDYVFD----MADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
D S F+ YV + L L G+ G+GKT T+
Sbjct: 4 VDDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPR--ATLLGRPGTGKTVTL 60
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 24.4 bits (52), Expect = 2.5
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 65 LEGYNATILAYGQTGSGKTY 84
+ + L + TGSGK+
Sbjct: 5 PQSFQVAHL-HAPTGSGKST 23
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 24.4 bits (52), Expect = 3.0
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
A LV L + G TG+GKT TM
Sbjct: 18 AGLVEA-LRDGERFVTLLGATGTGKTVTM 45
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 24.2 bits (51), Expect = 3.1
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 72 ILAYGQTGSGKTYTMG 87
+ G G GKT +
Sbjct: 4 VFLTGPPGVGKTTLIH 19
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 24.3 bits (52), Expect = 3.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 65 LEGYNATILAYGQTGSGKTYTMG 87
+E +L G G GKT T+
Sbjct: 2 VEPKGRVVLVVGVNGVGKTTTIA 24
>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella
typhimurium [TaxId: 90371]}
Length = 427
Score = 23.9 bits (51), Expect = 4.4
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 57 AASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFS 92
A L+GYN ++ Y T + T G S
Sbjct: 216 TAEHTQSMLKGYNKFVVQYA-TDAMTTQGKGQARGS 250
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 23.6 bits (50), Expect = 5.5
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 70 ATILAYGQTGSGKTY 84
TI G + SGK+
Sbjct: 25 LTIWLTGLSASGKST 39
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 23.5 bits (49), Expect = 5.6
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 69 NATILAYGQTGSGKTYTM 86
T + G+GKT
Sbjct: 7 GMTTVLDFHPGAGKTRRF 24
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 23.3 bits (50), Expect = 6.0
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 38 TFDYVFDMADVQTTIYELCAASLVAGSLEGYNAT----ILAYGQTGSGKTYT 85
TF V + + + E+ A +L G G GKT+
Sbjct: 7 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 58
>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
(Salmonella typhimurium) [TaxId: 90371]}
Length = 413
Score = 23.4 bits (50), Expect = 6.2
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 63 GSLEGYNATILAYGQ-TGSGKTYTMGTGTFSP 93
G +G + T L YG G+ G P
Sbjct: 231 GLRDGSSKTALLYGHGLGAEVKGIGSDGALRP 262
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 23.2 bits (48), Expect = 6.5
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 72 ILAYGQTGSGKTYTM 86
L TG GKT
Sbjct: 26 CLIVLPTGLGKTLIA 40
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 22.8 bits (48), Expect = 9.0
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 72 ILAYGQTGSGKTYTMG 87
G GSGKT T
Sbjct: 13 WFLVGLQGSGKTTTAA 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,747
Number of extensions: 13388
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 45
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)