BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1502
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 140/218 (64%), Gaps = 2/218 (0%)
Query: 331 ENEIWPVLGKIEFQNTNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389
+++IWP G++ ++ +Y G I +N++ +I P +++G++GRTG+GKS+L++A R
Sbjct: 10 KDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 390 LAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL 449
L EG I+ID + + + L + R +IPQ +FSGT RKNLDP + D +W
Sbjct: 70 LLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 450 QEVELKDMIMEGAG-LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
EV L+ +I + G L+ + +GG S G +QL+CLAR+++ IL+LDE +A++DP
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
T +I+RT+++ FADCTV+ R+ +++ D+ LV++
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIE 227
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 139/478 (29%), Positives = 233/478 (48%), Gaps = 57/478 (11%)
Query: 98 IHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIV 157
+ K++FE + P+ FF P G I++R D+ ++ VL +++ G++ ++GA+I+
Sbjct: 112 LRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIM 171
Query: 158 SLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLH----GLP 213
VN + S+ L ++ L +++ + +S++ KY R V LN + GL
Sbjct: 172 MFRVNVILSLVTLSIVPLTVLITQ--IVSSQTRKYFYENQR--VLGQLNGIIEEDISGLT 227
Query: 214 TIRAHGAAKILVEEFD-YHQDLHSSTWHLFVYT-----------NMGFAYLIDFLCLLYL 261
I+ + +E+FD ++ L +++ N+GFA + F L L
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 262 STILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENH-------MISVKRLVE 314
I+ V T +G + R E+ N + S +R+ E
Sbjct: 288 KDII---------------TVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332
Query: 315 YTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVG 374
LE E + P D E+ V G+IEF+N Y V+K++ I P +K+ +VG
Sbjct: 333 ILDLEEEKD-DP---DAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVG 388
Query: 375 RTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433
TG+GK++++ + R +V+ G I +D ID + S LRS+I I+ QD +LFS T+++N
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448
Query: 434 LDPFEKY-----PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLAR 487
L KY D + A + I G + + G + S GQRQL+ + R
Sbjct: 449 L----KYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504
Query: 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
A + N IL+LDEAT+NVD KT+ IQ + K T + IAHRL+TI ++D ++V+
Sbjct: 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVL 562
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 125/502 (24%), Positives = 241/502 (48%), Gaps = 49/502 (9%)
Query: 72 LIVGLF--VAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKD 129
LIV L V GI + A + + +F V+ ++ + + ++ R + D
Sbjct: 70 LIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTND 129
Query: 130 MGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLILLYLFWRLSKA- 182
+ + ++ + + + G +++++S+N +F IP ++LL++ W K
Sbjct: 130 VTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFV-WLTKKGN 188
Query: 183 --YLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEF-DYHQDLHSS-- 237
+ + +S + V R L G+ +RA + E F ++ L S
Sbjct: 189 PLFRKIQESTDEVNRVVRE--------NLLGVRVVRAFRREEYENENFRKANESLRRSII 240
Query: 238 -TWHLFVYTNMGFAYLIDF--LCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQW 294
+ L V+ F ++++ + +L+ +L+ + ++G + T LM ++ +
Sbjct: 241 SAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVR-----NNQMEIGSIMAYTNYLMQIM-F 294
Query: 295 AMRQAAEVENHMI----SVKRLVEYTKLEPEGNLSPNYEDENEIWP---VLGKIEFQNTN 347
++ + N ++ S KR++E N P E+ + V G + F+N
Sbjct: 295 SLMMIGNILNFIVRASASAKRVLEVL------NEKPAIEEADNALALPNVEGSVSFENVE 348
Query: 348 VRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTE 405
RY V+ +N ++ P + ++G TG+GKS+L+ I RL + E G +++D++D
Sbjct: 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVELKDMIME-GAG 463
V L LR +IS +PQ+ VLFSGT+++NL E D + A + ++ D I+ G
Sbjct: 409 TVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEG 468
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
+ V GG NFS GQ+Q + +ARA+V+ +L+LD+ T++VDP T+ I +++
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG 528
Query: 524 CTVLTIAHRLHTIMDSDKVLVM 545
CT I ++ T + +DK+LV+
Sbjct: 529 CTTFIITQKIPTALLADKILVL 550
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/501 (24%), Positives = 235/501 (46%), Gaps = 44/501 (8%)
Query: 72 LIVGL-FVAGISRSTAFYSACMRCSKG-----IHKKMFEAVVYSPLAFFSTNPSGRILNR 125
+I+GL FV G+S + Y C+ G + +++F ++ P+ FF +G +L+R
Sbjct: 70 MILGLMFVRGLSGFASSY--CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSR 127
Query: 126 FSKDMGAVDEVLPKAMLDAAQGVMQVSGALIV------SLSVNPLFSIPVLILLYLFWRL 179
+ D V +A++ + + G L + LS+ + PV+ F +
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF--V 185
Query: 180 SKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFD-YHQDLHSST 238
SK + + S++++ G V + L G + ++G ++ + FD + T
Sbjct: 186 SKRFRKISRNMQTAMG----HVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT 241
Query: 239 WHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIG--------GKVGLAVTQTMTLMG 290
L ++ D + + S L + F A + G + + LM
Sbjct: 242 MKLVSAQSIA-----DPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 291 VVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRY 350
++ +E + M + + L LE E + + YE E V G+++ ++ Y
Sbjct: 297 PLKALTSVTSEFQRGMAACQTLFGLMDLETERD-NGKYEAER----VNGEVDVKDVTFTY 351
Query: 351 LSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVP 408
+ + +++ +I + + +VGR+G+GKS++ R +V+ G I +D D D
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNLD---PFEKYPDYVLWTALQEVELKDMIMEGAGLN 465
L+ LR + +++ Q+ LF+ T+ N+ E + + A Q ++ + GL+
Sbjct: 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525
+ E GT+ S GQRQ + +ARA++R+ +L+LDEAT+ +D +++ IQ + + + T
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 526 VLTIAHRLHTIMDSDKVLVMD 546
VL IAHRL TI +D++LV+D
Sbjct: 532 VLVIAHRLSTIEQADEILVVD 552
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 125/214 (58%), Gaps = 11/214 (5%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVI 397
G+IEF+N + Y G +++++ T+ P + + +VG +GAGKS+++ +FR ++ G I
Sbjct: 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV-----LWTALQEV 452
+ID D V + LRS+I ++PQD VLF+ T+ N+ +Y + A Q
Sbjct: 112 RIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI----RYGRVTAGNDEVEAAAQAA 167
Query: 453 ELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
+ D IM G V E G S G++Q + +AR I++ I++LDEAT+ +D +
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 512 LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
IQ ++ K A+ T + +AHRL T++++D++LV+
Sbjct: 228 AIQASLAKVCANRTTIVVAHRLSTVVNADQILVI 261
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 122/495 (24%), Positives = 235/495 (47%), Gaps = 32/495 (6%)
Query: 72 LIVGLFV-AGISRSTAFYSACMRCSKG-----IHKKMFEAVVYSPLAFFSTNPSGRILNR 125
+++GL + GI+ + Y C+ G + +++F ++ P++FF +G +L+R
Sbjct: 70 VVIGLMILRGITSYVSSY--CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSR 127
Query: 126 FSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYL----FWRLSK 181
+ D V A++ + + G I+ + SI +++L + +SK
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSK 187
Query: 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHL 241
+ SK+++ G V T L G + G ++ + FD +
Sbjct: 188 RFRNISKNMQNTMG----QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMK 243
Query: 242 FVYTNMGFAYLIDFLCLLYLSTILISFFFFADI----GGKVGLAVTQTMTLMGVVQWAMR 297
V + +I + L L+ +L + F + + G + + + + LM ++
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 298 QAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRV- 356
A+ + M + + L E E + E + I G +EF+N Y G V
Sbjct: 304 VNAQFQRGMAACQTLFTILDSEQEKD-----EGKRVIERATGDVEFRNVTFTY-PGRDVP 357
Query: 357 -IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRS 414
++N+N+ I + + +VGR+G+GKS++ + I R ++ EG I +D D + L+ LR+
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRN 417
Query: 415 NISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEG 471
++++ Q+ LF+ T+ N+ E+Y + A + D I + GL+ + E
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
G S GQRQ I +ARA++R++ IL+LDEAT+ +D +++ IQ + + + T L IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 532 RLHTIMDSDKVLVMD 546
RL TI +D+++V++
Sbjct: 538 RLSTIEKADEIVVVE 552
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 138/559 (24%), Positives = 246/559 (44%), Gaps = 87/559 (15%)
Query: 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFY 88
KN T E R+ F K+ ++ Y GI +++ ++ +F+
Sbjct: 86 KNSTNMSEADKRAMFAKLEEEMTTYAYY--------YTGIGAGVLIVAYI-----QVSFW 132
Query: 89 SACMRCSKGIHK---KMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145
C+ + IHK K F A++ + +F + G + R + D+ ++E + +
Sbjct: 133 --CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFF 190
Query: 146 QGVMQVSGALIVS------LSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRS 199
Q + G I+ L++ L PVL L W A + +S + K L ++
Sbjct: 191 QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIW----AKILSSFTDKELHAYAKA 246
Query: 200 PVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTW-----HLFVYTNMGFAYLID 254
L + T+ A G K +E Y+ +L + + +MG A+L+
Sbjct: 247 GAVAE--EVLAAIRTVIAFGGQKKELER--YNNNLEEAKRLGIKKAITANISMGAAFLLI 302
Query: 255 F----LCLLYLSTILIS----------FFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAA 300
+ L Y ++++IS FF IG +V Q + A A
Sbjct: 303 YASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGA---FSVGQASPNIEAFANARGAAY 359
Query: 301 EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRV--IK 358
EV + + + ++K ++ +N + G +EF+N + Y S V +K
Sbjct: 360 EVFKIIDNKPSIDSFSK--------SGHKPDN----IQGNLEFKNIHFSYPSRKEVQILK 407
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417
LN+ + + + +VG +G GKS+ + + RL + ++G++ ID D + + LR I
Sbjct: 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 418 IIPQDPVLFSGTLRKN---------LDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMT 467
++ Q+PVLF+ T+ +N +D EK A++E D IM+ +
Sbjct: 468 VVSQEPVLFATTIAENIRYGREDVTMDEIEK--------AVKEANAYDFIMKLPHQFDTL 519
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
V E G S GQ+Q I +ARA+VRN IL+LDEAT+ +D +++ ++Q + K T +
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579
Query: 528 TIAHRLHTIMDSDKVLVMD 546
IAHRL T+ ++D + D
Sbjct: 580 VIAHRLSTVRNADVIAGFD 598
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 118/216 (54%), Gaps = 11/216 (5%)
Query: 339 GKIEFQNTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
G ++F Y + P V++ L++ + + + +VG +G GKS+++ + R + + G
Sbjct: 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK-----YPDYVLWTALQ 450
+ +D + + + + LR+ + I+ Q+P+LF ++ +N+ + Y + V A +
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIV--RAAK 1146
Query: 451 EVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
E + I N V + GT S GQ+Q I +ARA+VR IL+LDEAT+ +D ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
+ ++Q + K T + IAHRL TI ++D ++V+
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 138/559 (24%), Positives = 246/559 (44%), Gaps = 87/559 (15%)
Query: 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFY 88
KN T E R+ F K+ ++ Y GI +++ ++ +F+
Sbjct: 86 KNSTNMSEADKRAMFAKLEEEMTTYAYY--------YTGIGAGVLIVAYI-----QVSFW 132
Query: 89 SACMRCSKGIHK---KMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145
C+ + IHK K F A++ + +F + G + R + D+ ++E + +
Sbjct: 133 --CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFF 190
Query: 146 QGVMQVSGALIVS------LSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRS 199
Q + G I+ L++ L PVL L W A + +S + K L ++
Sbjct: 191 QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIW----AKILSSFTDKELHAYAKA 246
Query: 200 PVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTW-----HLFVYTNMGFAYLID 254
L + T+ A G K +E Y+ +L + + +MG A+L+
Sbjct: 247 GAVAE--EVLAAIRTVIAFGGQKKELER--YNNNLEEAKRLGIKKAITANISMGAAFLLI 302
Query: 255 F----LCLLYLSTILIS----------FFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAA 300
+ L Y ++++IS FF IG +V Q + A A
Sbjct: 303 YASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGA---FSVGQASPNIEAFANARGAAY 359
Query: 301 EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRV--IK 358
EV + + + ++K ++ +N + G +EF+N + Y S V +K
Sbjct: 360 EVFKIIDNKPSIDSFSK--------SGHKPDN----IQGNLEFKNIHFSYPSRKEVQILK 407
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417
LN+ + + + +VG +G GKS+ + + RL + ++G++ ID D + + LR I
Sbjct: 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 418 IIPQDPVLFSGTLRKN---------LDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMT 467
++ Q+PVLF+ T+ +N +D EK A++E D IM+ +
Sbjct: 468 VVSQEPVLFATTIAENIRYGREDVTMDEIEK--------AVKEANAYDFIMKLPHQFDTL 519
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
V E G S GQ+Q I +ARA+VRN IL+LDEAT+ +D +++ ++Q + K T +
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579
Query: 528 TIAHRLHTIMDSDKVLVMD 546
IAHRL T+ ++D + D
Sbjct: 580 VIAHRLSTVRNADVIAGFD 598
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 118/216 (54%), Gaps = 11/216 (5%)
Query: 339 GKIEFQNTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
G ++F Y + P V++ L++ + + + +VG +G GKS+++ + R + + G
Sbjct: 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK-----YPDYVLWTALQ 450
+ +D + + + + LR+ + I+ Q+P+LF ++ +N+ + Y + V A +
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIV--RAAK 1146
Query: 451 EVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
E + I N V + GT S GQ+Q I +ARA+VR IL+LDEAT+ +D ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
+ ++Q + K T + IAHRL TI ++D ++V+
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/495 (24%), Positives = 235/495 (47%), Gaps = 32/495 (6%)
Query: 72 LIVGLFV-AGISRSTAFYSACMRCSKG-----IHKKMFEAVVYSPLAFFSTNPSGRILNR 125
+++GL + GI+ + Y C+ G + +++F ++ P+AFF +G +L+R
Sbjct: 70 VVIGLMILRGITSYISSY--CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSR 127
Query: 126 FSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYL----FWRLSK 181
+ D V A++ + + G I+ + SI +++L + +SK
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHL 241
+ SK+++ T V T L G + G ++ + FD +
Sbjct: 188 RFRSISKNMQN----TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK 243
Query: 242 FVYTNMGFAYLIDFLCLLYLSTILISFFFFADI----GGKVGLAVTQTMTLMGVVQWAMR 297
V + +I + L L+ +L + F + + G + + + + LM ++
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 298 QAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRV- 356
A+ + M + + L E E + E + I G +EF+N Y G V
Sbjct: 304 VNAQFQRGMAACQTLFAILDSEQEKD-----EGKRVIDRATGDLEFRNVTFTY-PGREVP 357
Query: 357 -IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRS 414
++N+N+ I + + +VGR+G+GKS++ + I R ++ EG I +D D + L+ LR+
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417
Query: 415 NISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEG 471
++++ Q+ LF+ T+ N+ E+Y + A + D I + GL+ + E
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
G S GQRQ I +ARA++R++ IL+LDEAT+ +D +++ IQ + + + T L IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 532 RLHTIMDSDKVLVMD 546
RL TI +D+++V++
Sbjct: 538 RLSTIEQADEIVVVE 552
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 122/210 (58%), Gaps = 5/210 (2%)
Query: 339 GKIEFQNTNVRYLSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EG 395
G I +N + Y S P V ++ +N+ ++ + + +VG +G GKS++I+ + R +V +G
Sbjct: 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVEL 454
I ID +D D+ L LR N++++ Q+P LF+ T+ +N+ E + A +
Sbjct: 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533
Query: 455 KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ I G N V + GT S GQ+Q I +ARA+VRN IL+LDEAT+ +D +++ ++
Sbjct: 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543
Q+ + K T + IAHRL TI ++D ++
Sbjct: 594 QQALDKAAKGRTTIIIAHRLSTIRNADLII 623
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 122/215 (56%), Gaps = 9/215 (4%)
Query: 339 GKIEFQNTNVRYLSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
GK+ F+N Y P + +K L+ ++ P + + +VG +G GKS+++A + R + + G
Sbjct: 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV--- 452
I ID + + + RS I+I+ Q+P LF ++ +N+ + P V ++E
Sbjct: 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENI-IYGLDPSSVTMAQVEEAARL 1193
Query: 453 -ELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
+ + I E G V + GT S GQ+Q I +ARA+VRN IL+LDEAT+ +D +++
Sbjct: 1194 ANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 1253
Query: 511 LLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
++Q + + T + IAHRL+T+M++D + V+
Sbjct: 1254 KVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/493 (25%), Positives = 220/493 (44%), Gaps = 60/493 (12%)
Query: 89 SACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMG----AVDEVLPKAMLDA 144
++ R + +F +++ +AFF +G ++NR S D +V E L +
Sbjct: 88 TSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAG 147
Query: 145 AQGVMQVSGALIVS-------LSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVT 197
AQ + +S VS LSV P PV I+ ++ R YLR L VT
Sbjct: 148 AQASVGISMMFFVSPNLATFVLSVVP----PVSIIAVIYGR----YLRK------LTKVT 193
Query: 198 RSPVFTHLNAC---LHGLPTIRAHGAAKILVEEFDYHQD--LHSSTWHLFV----YTNMG 248
+ + + + T+RA G +E++ D + + F + G
Sbjct: 194 QDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATG 253
Query: 249 FAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQA-------AE 301
+ + L +LY +L+ G + V + + + W +E
Sbjct: 254 LSGNLIVLSVLYKGGLLM---------GSAHMTVGELSSFLMYAFWVGISIGGLSSFYSE 304
Query: 302 VENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRV--IKN 359
+ + + RL E + EP+ + + + G +EF+N + Y + P V ++
Sbjct: 305 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQ--GALEFKNVHFAYPARPEVPIFQD 362
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418
+++I +VG +G+GKS++++ + RL + G I +D D + LRS I
Sbjct: 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGT 422
Query: 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV-ELKDMIME----GAGLNMTVYEGGT 473
+ Q+P+LFS ++ +N+ P V +Q V E+ + + G N V E G
Sbjct: 423 VSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533
S GQ+Q I +ARA+++N IL+LDEAT+ +D + + L+Q + + TVL IAHRL
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRL 542
Query: 534 HTIMDSDKVLVMD 546
TI +++ V V+D
Sbjct: 543 STIKNANMVAVLD 555
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 124/493 (25%), Positives = 219/493 (44%), Gaps = 60/493 (12%)
Query: 89 SACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMG----AVDEVLPKAMLDA 144
++ R + +F +++ +AFF +G ++NR S D +V E L +
Sbjct: 119 TSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAG 178
Query: 145 AQGVMQVSGALIVS-------LSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVT 197
AQ + +S VS LSV P PV I+ ++ R YLR L VT
Sbjct: 179 AQASVGISMMFFVSPNLATFVLSVVP----PVSIIAVIYGR----YLRK------LTKVT 224
Query: 198 RSPVFTHLNAC---LHGLPTIRAHGAAKILVEEFDYHQD--LHSSTWHLFV----YTNMG 248
+ + + + T+RA G +E++ D + + F + G
Sbjct: 225 QDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATG 284
Query: 249 FAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQA-------AE 301
+ + L +LY +L+ G + V + + + W +E
Sbjct: 285 LSGNLIVLSVLYKGGLLM---------GSAHMTVGELSSFLMYAFWVGISIGGLSSFYSE 335
Query: 302 VENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRV--IKN 359
+ + + RL E + EP+ + + + G +EF+N + Y + P V ++
Sbjct: 336 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQ--GALEFKNVHFAYPARPEVPIFQD 393
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418
+++I +VG +G+GKS++++ + RL + G I +D D + LRS I
Sbjct: 394 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGT 453
Query: 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV-ELKDMIME----GAGLNMTVYEGGT 473
+ Q+P+LFS ++ +N+ P V +Q V E+ + + G N V E G
Sbjct: 454 VSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 513
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533
S GQ+Q I +ARA+++N IL+LDEAT+ +D + + L+Q + + TVL IAH L
Sbjct: 514 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHL 573
Query: 534 HTIMDSDKVLVMD 546
TI +++ V V+D
Sbjct: 574 STIKNANMVAVLD 586
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 4/197 (2%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP 408
Y +++++++ P I G +G GKS++ + + R + G I ID +++
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS 70
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNLD-PFE-KYPDYVLWTALQEVELKDMIMEGAG-LN 465
L RS I + QD + +GT+R+NL E Y D LW L + + LN
Sbjct: 71 LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525
V E G S GQRQ + +ARA +RN IL+LDEATA++D +++ ++Q+ + T
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT 190
Query: 526 VLTIAHRLHTIMDSDKV 542
L IAHRL TI+D+DK+
Sbjct: 191 TLVIAHRLSTIVDADKI 207
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/478 (24%), Positives = 219/478 (45%), Gaps = 53/478 (11%)
Query: 98 IHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALI- 156
I KK++ + F++ N G++++R D+ + + +++ + + AL
Sbjct: 96 IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSI 155
Query: 157 -----VSLSVNPLFSIPVLIL-LYLFW-RLSKAYLRTSKSLKYLEGVTRSPVFTHLNACL 209
V L++ LF P IL +Y+F+ RL K S++L ++G L+ +
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGF--------LHERV 207
Query: 210 HGLPTIRAHGAAKILVEEFDYH------QDLHSSTWHLFVY------TNMGFAYLIDFLC 257
G+ +++ + FD + L + W+ + + T++G +I
Sbjct: 208 QGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGA 267
Query: 258 LLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTK 317
L +S + G + V L G ++ + + S+ R+ +
Sbjct: 268 YLAISGSITV--------GTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQL-- 317
Query: 318 LEPEGNLSPNYEDENEI--WPV---LGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIG 371
+ +Y+ +N + P+ G+I+ + + +Y ++K++N++I E +
Sbjct: 318 ------IDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVA 371
Query: 372 IVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430
VG +G GKS+LI I R +V G I ID + +D LR+ I ++ QD +LFS T+
Sbjct: 372 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431
Query: 431 RKN-LDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARA 488
++N L D + A + D IM G + V E G S GQ+Q + +AR
Sbjct: 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491
Query: 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
+ N IL+LDEAT+ +D +++ +IQ + D T L +AHRL TI +DK++V++
Sbjct: 492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIE 549
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 8/212 (3%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R E G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELK 455
ID D + LR + ++ QD VL + ++ N+ +P + L
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 121
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+ +D +++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
R + K TV+ IAHRL T+ ++D+++VM+
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVME 213
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 8/212 (3%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R E G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELK 455
ID D + LR + ++ QD VL + ++ N+ +P + L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 119
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+ +D +++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
R + K TV+ IAHRL T+ ++D+++VM+
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVME 211
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 8/212 (3%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R E G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELK 455
ID D + LR + ++ QD VL + ++ N+ +P + L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+ +D +++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
R + K TV+ IAHRL T+ ++D+++VM+
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVME 217
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 114/212 (53%), Gaps = 8/212 (3%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F+N RY P ++ N+N++I E IGIVGR G+GKS+L I R E G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELK 455
ID D + LR + ++ QD VL + ++ N+ +P + L
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 121
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+ +D +++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
R + K TV+ IAHRL T+ ++D+++VM+
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVME 213
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 8/212 (3%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R E G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELK 455
ID D + LR + ++ QD VL + ++ N+ +P + L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D I E G N V E G S GQRQ I +ARA+V N IL+ D+AT+ +D +++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
R + K TV+ IAHRL T+ ++D+++VM+
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVME 217
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 8/212 (3%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R E G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELK 455
ID D + LR + ++ QD VL + ++ N+ +P + L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 119
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+ +D +++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
R + K TV+ IA RL T+ ++D+++VM+
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVME 211
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 8/212 (3%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R E G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELK 455
ID D + LR + ++ QD VL + ++ N+ +P + L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+ +D +++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
R + K TV+ IA RL T+ ++D+++VM+
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVME 217
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 12/214 (5%)
Query: 341 IEFQNTNVRY--LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIK 398
IEF + N Y + R +K++N I +VG TG+GKS++ ++R + EG IK
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN-----LDPFEKYPDYVLWTALQEVE 453
I + + +RS I I+PQD +LF+ T++ N LD D + A + +
Sbjct: 78 IGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA----TDEEVIKATKSAQ 133
Query: 454 LKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
L D I + V G S G+RQ I +AR ++++ I++ DEAT+++D KT+ L
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
Q+ + + T++ IAHRL TI ++ +++++
Sbjct: 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLN 227
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 111/215 (51%), Gaps = 8/215 (3%)
Query: 339 GKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
G ++FQ+ + Y + P +V++ L T++P + +VG G+GKS++ A + L + G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQ-EVE 453
+ +D L + ++ + Q+P+LF + R+N+ + P TA+ E
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 454 LKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
D I G + V E G S GQRQ + LARA++R +L+LD+AT+ +D L
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 513 IQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVM 545
+QR + + ++A TVL I H+L + +L +
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFL 229
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 8/215 (3%)
Query: 339 GKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
G ++FQ+ + Y + P +V++ L T++P + +VG G+GKS++ A + L + G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQ-EVE 453
+ +D L + ++ + Q+P+LF + R+N+ + P TA+ E
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 454 LKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
D I G + V E G +VGQRQ + LARA++R +L+LD AT+ +D L
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 513 IQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVM 545
+QR + + ++A TVL I +L + +L +
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFL 229
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 8/215 (3%)
Query: 339 GKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
G ++FQ+ + Y + P +V++ L T++P + +VG G+GKS++ A + L + G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQ-EVE 453
+ +D L + ++ + Q+P+LF + R+N+ + P TA+ E
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 454 LKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
D I G + V E G S GQRQ + LARA++R +L+LD AT+ +D L
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 513 IQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVM 545
+QR + + ++A TVL I +L + +L +
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFL 229
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 110/218 (50%), Gaps = 12/218 (5%)
Query: 339 GKIEFQNTNVRYLSGPRVI--KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGV 396
G ++FQ+ + Y + P V+ + L T+ P E +VG G+GKS++ A + L + G
Sbjct: 13 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 72
Query: 397 IKIDDIDTEDVPLSK---LRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEV 452
+ +D + +P + L ++ + Q+P +F +L++N+ + P TA
Sbjct: 73 QLL--LDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 453 ELKDMIMEG--AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
+ G G + V E G+ S GQRQ + LARA++R +L+LD+AT+ +D +
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 511 LLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMD 546
L +++ + + +VL I L + +D +L ++
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLE 228
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+KN+N+ I E + I G TG+GK+SL+ I L EG+IK
Sbjct: 48 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS--------- 98
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
+S Q + GT+++N+ Y +Y + ++ +L+ I + A + TV
Sbjct: 99 ----GRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 154
Query: 470 -EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T + + + + K A+ T +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 215 LVTSKMEHLRKADKILIL 232
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+KN+N+ I E + I G TG+GK+SL+ I L EG+IK
Sbjct: 48 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS--------- 98
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
+S Q + GT+++N+ Y +Y + ++ +L+ I + A + TV
Sbjct: 99 ----GRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 154
Query: 470 -EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T + + + + K A+ T +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 215 LVTSKMEHLRKADKILIL 232
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+KN+N+ I E + I G TG+GK+SL+ I L EG+I
Sbjct: 48 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII------------ 95
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
K +S Q + GT+++N+ Y +Y + ++ +L+ I + A + TV
Sbjct: 96 -KHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 154
Query: 470 -EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T + + + + K A+ T +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 215 LVTSKMEHLRKADKILIL 232
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+KN+N+ I E + I G TG+GK+SL+ I L EG+I
Sbjct: 48 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII------------ 95
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
K +S Q + GT+++N+ Y +Y + ++ +L+ I + A + TV
Sbjct: 96 -KHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 154
Query: 470 -EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T + + + + K A+ T +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 215 LVTSKMEHLRKADKILIL 232
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+KN+N+ I E + I G TG+GK+SL+ I L EG+I
Sbjct: 48 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII------------ 95
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
K +S Q + GT+++N+ Y +Y + ++ +L+ I + A + TV
Sbjct: 96 -KHSGRVSFCSQFSWIMPGTIKENIIGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVL 153
Query: 470 -EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T + + + + K A+ T +
Sbjct: 154 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 213
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 214 LVTSKMEHLRKADKILIL 231
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 16/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+K++N I + + + G TGAGK+SL+ I L EG I
Sbjct: 48 LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI------------ 95
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTV 468
K IS Q + GT+++N+ Y +Y + ++ +L++ I + A N+ +
Sbjct: 96 -KHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 154
Query: 469 YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T+ I + + K A+ T +
Sbjct: 155 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 214
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 215 LVTSKMEHLKKADKILIL 232
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+K++N I + + + G TGAGK+SL+ I L EG I
Sbjct: 48 LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI------------ 95
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTV 468
K IS Q+ + GT+++N+ Y +Y + ++ +L++ I + A N+ +
Sbjct: 96 -KHSGRISFCSQNSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 469 YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T+ I + + K A+ T +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 214 LVTSKMEHLKKADKILIL 231
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPL 409
L G V+K++N I + + + G TGAGK+SL+ I L EG I
Sbjct: 48 LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI------------ 95
Query: 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTV 468
K IS Q+ + GT+++N+ Y +Y + ++ +L++ I + A N+ +
Sbjct: 96 -KHSGRISFCSQNSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 469 YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVL 527
EGG S GQR I LARA+ ++ + +LD +D T+ I + + K A+ T +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 528 TIAHRLHTIMDSDKVLVM 545
+ ++ + +DK+L++
Sbjct: 214 LVTSKMEHLKKADKILIL 231
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSK 411
G V+K++N I + + + G TGAGK+SL+ I L EG IK
Sbjct: 32 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS----------- 80
Query: 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYE 470
IS Q + GT+++N+ Y +Y + ++ +L++ I + A N+ + E
Sbjct: 81 --GRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 138
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVLTI 529
GG S GQR I LARA+ ++ + +LD +D T+ I + + K A+ T + +
Sbjct: 139 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 198
Query: 530 AHRLHTIMDSDKVLVM 545
++ + +DK+L++
Sbjct: 199 TSKMEHLKKADKILIL 214
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSK 411
G V+K++N I + + + G TGAGK+SL+ I L EG IK
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------- 66
Query: 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYE 470
IS Q + GT+++N+ Y +Y + ++ +L++ I + A N+ + E
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 126
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVLTI 529
GG S GQR I LARA+ ++ + +LD +D T+ I + + K A+ T + +
Sbjct: 127 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186
Query: 530 AHRLHTIMDSDKVLVM 545
++ + +DK+L++
Sbjct: 187 TSKMEHLKKADKILIL 202
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 17/196 (8%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSK 411
G V+K++N I + + + G TGAGK+SL+ I L EG IK
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------- 66
Query: 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYE 470
IS Q + GT+++N+ Y +Y + ++ +L++ I + A N+ + E
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 125
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVLTI 529
GG S GQR I LARA+ ++ + +LD +D T+ I + + K A+ T + +
Sbjct: 126 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 185
Query: 530 AHRLHTIMDSDKVLVM 545
++ + +DK+L++
Sbjct: 186 TSKMEHLKKADKILIL 201
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSK 411
G V+K++N I + + + G TGAGK+SL+ I L EG I K
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------K 96
Query: 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYE 470
IS Q + GT+++N+ Y +Y + ++ +L++ I + A N+ + E
Sbjct: 97 HSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVLTI 529
GG S GQ+ I LARA+ ++ + +LD +D T+ I + + K A+ T + +
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 530 AHRLHTIMDSDKVLVM 545
++ + +DK+L++
Sbjct: 217 TSKMEHLKKADKILIL 232
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 17/196 (8%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSK 411
G V+K++N I + + + G TGAGK+SL+ I L EG I K
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------K 96
Query: 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYE 470
IS Q + GT+++N+ Y +Y + ++ +L++ I + A N+ + E
Sbjct: 97 HSGRISFCSQFSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVLTI 529
GG S GQ+ I LARA+ ++ + +LD +D T+ I + + K A+ T + +
Sbjct: 156 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215
Query: 530 AHRLHTIMDSDKVLVM 545
++ + +DK+L++
Sbjct: 216 TSKMEHLKKADKILIL 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLN-ITIH-PKEKI-GIVGRTGAGKSSLIAAIFRLAE-VEGV 396
I+ N + G R I+ LN +++H P +I G++G +GAGKS+LI + L EG
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 397 IKIDDIDT---EDVPLSKLRSNISIIPQD-PVLFSGTLRKNLD-PFE--KYPDYVLWTAL 449
+ +D + + L+K R I +I Q +L S T+ N+ P E P + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
E+ + + G G Y +N S GQ+Q + +ARA+ N +L+ DEAT+ +DP T
Sbjct: 122 TEL----LSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 510 D---LLIQRTIRKKFADCTVLTIAHRLHTI 536
L + + I ++ T+L I H + +
Sbjct: 176 TRSILELLKDINRRLG-LTILLITHEMDVV 204
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLS 410
S P + + +I + +VG+ G GKSSL++A+ + +VEG + I
Sbjct: 16 SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI----------- 64
Query: 411 KLRSNISIIPQDPVLFSGTLRKNL-------DPFEKYPDYVLWTALQEVELKDMIMEGAG 463
+ +++ +PQ + + +LR+N+ +P+ Y + AL L D+ + +G
Sbjct: 65 --KGSVAYVPQQAWIQNDSLRENILFGCQLEEPY--YRSVIQACAL----LPDLEILPSG 116
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI---RKK 520
+ E G N S GQ+Q + LARA+ N I + D+ + VD I + +
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176
Query: 521 FADCTVLTIAHRLHTIMDSDKVLVM 545
+ T + + H + + D ++VM
Sbjct: 177 LKNKTRILVTHSMSYLPQVDVIIVM 201
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLN-ITIH-PKEKI-GIVGRTGAGKSSLIAAIFRLAE-VEGV 396
I+ N + G R I+ LN +++H P +I G++G +GAGKS+LI + L EG
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 397 IKIDDIDT---EDVPLSKLRSNISIIPQD-PVLFSGTLRKNLD-PFE--KYPDYVLWTAL 449
+ +D + + L+K R I +I Q +L S T+ N+ P E P + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
E+ + + G G Y +N S GQ+Q + +ARA+ N +L+ D+AT+ +DP T
Sbjct: 145 TEL----LSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 510 D---LLIQRTIRKKFADCTVLTIAHRLHTI 536
L + + I ++ T+L I H + +
Sbjct: 199 TRSILELLKDINRRLG-LTILLITHEMDVV 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 24/205 (11%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID--TEDVPLSKL 412
V+K +N+ I E + ++G +G+GKS+ + + L + EG I ID I+ +D L+K+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 413 RSNISIIPQDPVLFSGTLRKN---LDPFE--KYPDYVLWTALQEVELKDM-IMEGAGLNM 466
R + ++ Q LF N L P + K+P ++ E K M +++ GL
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR-------EKAEAKAMELLDKVGLKD 151
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT--DLLIQRTIRKKFAD- 523
+ + S GQ Q + +ARA+ I++ DE T+ +DP+ ++L ++ K+ A+
Sbjct: 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL---SVMKQLANE 208
Query: 524 -CTVLTIAHRLHTIMD-SDKVLVMD 546
T++ + H + + D+VL MD
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMD 233
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 24/205 (11%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID--TEDVPLSKL 412
V+K +N+ I E + ++G +G+GKS+ + + L + EG I ID I+ +D L+K+
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 413 RSNISIIPQDPVLFSGTLRKN---LDPFE--KYPDYVLWTALQEVELKDM-IMEGAGLNM 466
R + ++ Q LF N L P + K+P ++ E K M +++ GL
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR-------EKAEAKAMELLDKVGLKD 130
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT--DLLIQRTIRKKFAD- 523
+ + S GQ Q + +ARA+ I++ DE T+ +DP+ ++L ++ K+ A+
Sbjct: 131 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL---SVMKQLANE 187
Query: 524 -CTVLTIAHRLHTIMD-SDKVLVMD 546
T++ + H + + D+VL MD
Sbjct: 188 GMTMVVVTHEMGFAREVGDRVLFMD 212
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLN-ITIH-PKEKI-GIVGRTGAGKSSLIAAIFRLAE-VEGV 396
I+ N + G R I+ LN +++H P +I G++G +GAGKS+LI + L EG
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 397 IKIDDIDT---EDVPLSKLRSNISIIPQD-PVLFSGTLRKNLD-PFE--KYPDYVLWTAL 449
+ +D + + L+K R I I Q +L S T+ N+ P E P + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
E+ + + G G Y +N S GQ+Q + +ARA+ N +L+ D+AT+ +DP T
Sbjct: 145 TEL----LSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 510 D---LLIQRTIRKKFADCTVLTIAH 531
L + + I ++ T+L I H
Sbjct: 199 TRSILELLKDINRRLG-LTILLITH 222
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 40/231 (17%)
Query: 341 IEFQNTNVRYLSGPRVI---KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
I+ +N Y G +I KN+N+ I E + I+G +G+GKS+++ I L + EG
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
+ ID+I T D+ +L + I +D + F F+++ L TAL+ VEL
Sbjct: 62 VYIDNIKTNDLDDDEL----TKIRRDKIGFV---------FQQFNLIPLLTALENVELP- 107
Query: 457 MIMEGAG--------------LNMTVYE------GGTNFSVGQRQLICLARAIVRNNVIL 496
+I + G L M E S GQ+Q + +ARA+ N I+
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 497 VLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVM 545
+ D+ T +D KT I + ++K + TV+ + H ++ ++++ +
Sbjct: 168 LADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYL 218
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 40/231 (17%)
Query: 341 IEFQNTNVRYLSGPRVI---KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
++ +N Y G +I KN+N+ I E + I+G +G+GKS+++ I L + EG
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
+ ID+I T D+ +L + I +D + F F+++ L TAL+ VEL
Sbjct: 62 VYIDNIKTNDLDDDEL----TKIRRDKIGFV---------FQQFNLIPLLTALENVELP- 107
Query: 457 MIMEGAG--------------LNMTVYE------GGTNFSVGQRQLICLARAIVRNNVIL 496
+I + G L M E S GQ+Q + +ARA+ N I+
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 497 VLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVM 545
+ D+ T +D KT I + ++K + TV+ + H ++ ++++ +
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYL 218
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI 399
+IE + + RY +G V+K++N + +VG+ G+GK++L+ + L G I +
Sbjct: 11 RIELNSVSFRY-NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFL 69
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
D + P LR N+ + Q+P + T+ +++ + ++ L E E++
Sbjct: 70 DGSPAD--PFL-LRKNVGYVFQNPSSQIIGATVEEDV----AFSLEIM--GLDESEMRKR 120
Query: 458 I---MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
I +E GL+ N S GQ+Q + +A + R+ L LDE + +DP + I
Sbjct: 121 IKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIF 180
Query: 515 RTIRK-KFADCTVLTIAHRLHTIMDSDKVL 543
+ + K ++ + H L + D D +L
Sbjct: 181 QVLESLKNEGKGIILVTHELEYLDDMDFIL 210
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 38/230 (16%)
Query: 341 IEFQNTNVRYLSGPRVI---KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
I+ +N Y G +I KN+N+ I E + I G +G+GKS+ + I L + EG
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
+ ID+I T D+ +L + I +D + F F+++ L TAL+ VEL
Sbjct: 62 VYIDNIKTNDLDDDEL----TKIRRDKIGFV---------FQQFNLIPLLTALENVELPL 108
Query: 457 MI------------------MEGAGLNMTVYEGGTN-FSVGQRQLICLARAIVRNNVILV 497
+ ++ A L N S GQ+Q + +ARA+ N I++
Sbjct: 109 IFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 498 LDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVM 545
DE T +D KT I + ++K + TV+ + H ++ ++++ +
Sbjct: 169 ADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYL 218
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 20/199 (10%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPLSKLR 413
+ N+N+ I E + ++G +G+GKS+L IA I++ G I D+ D ++P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKD-- 74
Query: 414 SNISIIPQDPVLFSG-TLRKNLD-PFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
N+ ++ Q+ L+ T+ KN+ P E K P + ++EV M+ LN +
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV--AKMLHIDKLLNRYPW 132
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ---RTIRKKFADCTV 526
+ S GQ+Q + +ARA+V+ +L+LDE +N+D L ++ + ++K+ TV
Sbjct: 133 Q----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 527 LTIAHRLHTIMDSDKVLVM 545
+ + +D++ V+
Sbjct: 189 YVTHDQAEALAMADRIAVI 207
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 38/230 (16%)
Query: 338 LGKIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV 393
+G+IE N + + G + ++N+++ I+ E + + G TG+GKS+L+ + L E
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 394 EGVIKIDDI--DTEDVPLSKLRSNISII---PQDPVLFSGTLR------KNLDPFEKYPD 442
D+ D E ++R NI I P+D KN YPD
Sbjct: 62 TS----GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-----YPD 112
Query: 443 YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF--SVGQRQLICLARAIVRNNVILVLDE 500
V L ME GL+ ++ F S G+++ + +A IV IL+LDE
Sbjct: 113 R------DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 166
Query: 501 ATANVD--PKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMDS-DKVLVMD 546
+D KTDLL R + K K TV+ I+H + T+++ D+V+V++
Sbjct: 167 PLVGLDREGKTDLL--RIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 214
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKI 399
++ + N Y G +K +N+ I E I+G G GKS+L L G I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 400 DD--IDTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455
D+ ID + KLR +I I+ QDP LFS ++ ++ + L E E++
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV------YQDVSFGAVNMKLPEDEIR 121
Query: 456 ---DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
D ++ G+ + S GQ++ + +A +V +L+LDE TA +DP
Sbjct: 122 KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 372 IVGRTGAGKS---SLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428
++G TGAGKS LIA I + G ++++ D PL R I +PQD LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADI--TPLPPERRGIGFVPQDYALFPH 84
Query: 429 -TLRKNLDPFEKYPDYVLWTALQEVELKDM--IMEGAGLNMTVYEGGTNFSVGQRQLICL 485
++ +N+ Y L + + + + E G+ + S G+RQ + L
Sbjct: 85 LSVYRNIA-------YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVAL 137
Query: 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIR--KKFADCTVLTIAHRL-HTIMDSDKV 542
ARA+V +L+LDE + VD KT ++ +R ++ D +L + H L M +D+V
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 543 LVM 545
VM
Sbjct: 198 AVM 200
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 26/186 (13%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKS---SLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLR 413
+ NL++ + E I+G TGAGK+ LIA F + + G I +D D D LS +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPD-SGRILLDGKDVTD--LSPEK 71
Query: 414 SNISIIPQDPVLFSG-TLRKNLD-----PFEKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
+I+ + Q+ LF ++KNL+ K P VL TA +D+ +E
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA------RDLKIE-----HL 120
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR--TIRKKFADCT 525
+ S G++Q + LARA+V N IL+LDE + +DP+T + ++ K T
Sbjct: 121 LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180
Query: 526 VLTIAH 531
VL I H
Sbjct: 181 VLHITH 186
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 34/209 (16%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDI--DTEDVPLSKL 412
+ ++N+++ I+ E + + G TG+GKS+L+ + L E D+ D E ++
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS----GDVLYDGERKKGYEI 76
Query: 413 RSNISII---PQDPVLFSGTLR------KNLDPFEKYPDYVLWTALQEVELKDMIMEGAG 463
R NI I P+D KN YPD V L ME G
Sbjct: 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-----YPDR------DPVPLVKKAMEFVG 125
Query: 464 LNMTVYEGGTNF--SVGQRQLICLARAIVRNNVILVLDEATANVD--PKTDLLIQRTIRK 519
L+ ++ F S G+++ + +A IV IL+LDE +D KTDLL R + K
Sbjct: 126 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL--RIVEK 183
Query: 520 -KFADCTVLTIAHRLHTIMDS-DKVLVMD 546
K TV+ I+H + T+++ D+V+V++
Sbjct: 184 WKTLGKTVILISHDIETVINHVDRVVVLE 212
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415
+ LN+TI E + ++G +G GK++ + I L E EG I D D +P N
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 85
Query: 416 ISIIPQDPVLFSG-TLRKNLD--------PFEKYPDYVLWTA--LQEVELKDMIMEGAGL 464
IS++ Q ++ T+ +N+ P ++ V W A LQ EL
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL---------- 135
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK---KF 521
+ Y S GQRQ + +ARAIV +L++DE +N+D K + ++ I+K K
Sbjct: 136 -LNRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 192
Query: 522 ADCTVLTIAHRLHTIMDSDKVLVMD 546
T+ ++ + D++ VM+
Sbjct: 193 KVTTIYVTHDQVEAMTMGDRIAVMN 217
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415
+ LN+TI E + ++G +G GK++ + I L E EG I D D +P N
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 84
Query: 416 ISIIPQDPVLFSG-TLRKNLD--------PFEKYPDYVLWTA--LQEVELKDMIMEGAGL 464
IS++ Q ++ T+ +N+ P ++ V W A LQ EL
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL---------- 134
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK---KF 521
+ Y S GQRQ + +ARAIV +L++DE +N+D K + ++ I+K K
Sbjct: 135 -LNRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191
Query: 522 ADCTVLTIAHRLHTIMDSDKVLVMD 546
T+ ++ + D++ VM+
Sbjct: 192 KVTTIYVTHDQVEAMTMGDRIAVMN 216
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IEF Y G R ++ ++ I E +G++G +G+GK++++ I L +G + I
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLD---PFEKYPDYVLWTALQEVELK 455
D+P K N+ ++ Q+ LF T+ N+ ++ P + ++E+ L+
Sbjct: 75 GGKRVTDLPPQK--RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL-LR 131
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
M +E N +E S GQ+Q + LARA+ +L+ DE A +D + ++
Sbjct: 132 FMRLESYA-NRFPHE----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRT 186
Query: 516 TIRKKFADCTVLT--IAHRLHTIMD-SDKVLVM 545
+R+ + V + + H ++ +D+VLV+
Sbjct: 187 FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVL 219
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 16/161 (9%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSN 415
+ N+NI I E+ GI+G +GAGK++ + I L G + DD L
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD------RLVASNGK 74
Query: 416 ISIIPQDP----VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEG 471
+ + P+D V + L NL FE + + + E++ + E A + + ++
Sbjct: 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI-LDIHHV 133
Query: 472 GTNF----SVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+F S GQ+Q + LARA+V++ +L+LDE +N+D +
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRS 414
++K ++ I E G++G GAGK++ + I L + G++ + + + P ++R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HEVRK 88
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI---MEGAGLNMTVYEG 471
IS +P++ +G R N+ E + A E+++M+ E AGL + +
Sbjct: 89 LISYLPEE----AGAYR-NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTI 529
+ +S G + + +ARA++ N + +LDE T+ + D+L R +RK K A LTI
Sbjct: 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL----DVLNAREVRKILKQASQEGLTI 199
Query: 530 AHRLHTIMDSD 540
H +++ +
Sbjct: 200 LVSSHNMLEVE 210
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 15/213 (7%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID-TE 405
V+Y + + ++I+++ + I+G G+GKS+LI I + EG + ++ D T
Sbjct: 14 VKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73
Query: 406 DVPLSKLRSNISIIPQDP-VLFSGTLRKNLDPFEKYPD--------YVLWTALQE--VEL 454
P I Q P L T+ +NL E P Y W +E VE
Sbjct: 74 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLI 513
I+E L+ S GQ +L+ + RA++ N ++V+DE A V P +
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDS-DKVLVM 545
+ K T L I HRL +++ D + VM
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSN 415
+ N+NI I E+ GI+G +GAGK++ + I L G + DD L
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD------RLVASNGK 74
Query: 416 ISIIPQDP----VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEG 471
+ + P+D V + L NL FE + + + E++ + E A + + ++
Sbjct: 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI-LDIHHV 133
Query: 472 GTNF----SVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+F S Q+Q + LARA+V++ +L+LDE +N+D +
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEGVIKIDDIDTE 405
+Y + + ++ + E + ++G +G GK++ ++A I++ G I DD+
Sbjct: 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68
Query: 406 DVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDM-IMEGAG 463
D+P K R + ++ Q+ L+ T+ +N+ +P + EVE + + I
Sbjct: 69 DIP-PKYRE-VGMVFQNYALYPHMTVFENI----AFPLRARRISKDEVEKRVVEIARKLL 122
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
++ + T S GQ+Q + LARA+V+ +L+ DE +N+D ++++ I+
Sbjct: 123 IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 333 EIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE 392
++W V G++ T VR +S + + E + ++G +G GK++ + I L E
Sbjct: 8 DVWKVFGEV----TAVREMS---------LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54
Query: 393 -VEGVIKIDDIDTEDVPLSKLRSNISIIPQDP----VLFSGTLRKNLDPFEK--YPDYVL 445
G I I D D I + P+D V S L ++ ++ +P +
Sbjct: 55 PSRGQIYIGDKLVADP-----EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109
Query: 446 WTALQEVELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
QE++ + + E GL + S GQRQ + L RAIVR + ++DE +N
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 505 VDPKTDLLIQ---RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
+D K + ++ + ++++ T+ ++ + D++ VM+
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN 214
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDD---IDTED-VPLSK 411
+K+L++ I E + ++G +G GK++ + I L E G I I+D D E V +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 412 LRSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELK-DMIMEGAGLNMTVY 469
+++ + Q L+ T+ N+ +P + QE++ + + E GL +
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNI----AFPLKLRKVPKQEIDKRVREVAEXLGLTELLN 137
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTI 529
S GQRQ + L RAI+R + + DE +N+D K + + ++K V TI
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 15/213 (7%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID-TE 405
V+Y + + ++I+++ + I+G G+GKS+LI I + EG + ++ D T
Sbjct: 14 VKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73
Query: 406 DVPLSKLRSNISIIPQDP-VLFSGTLRKNLDPFEKYPD--------YVLWTALQE--VEL 454
P I Q P L T+ +NL E P Y W +E VE
Sbjct: 74 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLI 513
I+E L+ S GQ +L+ + RA++ N ++V+D+ A V P +
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIF 193
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDS-DKVLVM 545
+ K T L I HRL +++ D + VM
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 15/213 (7%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID-TE 405
V+Y + + ++I++ + I+G G+GKS+LI I + EG + ++ D T
Sbjct: 14 VKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73
Query: 406 DVPLSKLRSNISIIPQDP-VLFSGTLRKNLDPFEKYPD--------YVLWTALQE--VEL 454
P I Q P L T+ +NL E P Y W +E VE
Sbjct: 74 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLI 513
I+E L+ S GQ +L+ + RA++ N ++V+DE A V P +
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDS-DKVLVM 545
+ K T L I HRL +++ D + VM
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 38/177 (21%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDI 402
+N Y + + + LN ++ + + ++G+ G GKS+L+ + + ++G I++
Sbjct: 8 ENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--- 64
Query: 403 DTEDVPLSKLRSNISIIPQ-----------DPVLFSGTLRKNLDPFEKYPDYVLWTALQE 451
+I +PQ D VL + N K DY A+Q
Sbjct: 65 ----------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY--QVAMQA 112
Query: 452 VELKDMIMEGAGLNMT--VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
++ LN+T T+ S GQRQLI +ARAI +++LDE T+ +D
Sbjct: 113 LDY---------LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRS 414
V K++N+ IH E + VG +G GKS+L+ I L + G + I + D P ++
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--R 75
Query: 415 NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV--ELKDMIMEGAGLNMTVYEG 471
+ ++ Q L+ ++ +N+ K L A +EV + + + E L +
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLK-----LAGAKKEVINQRVNQVAEVLQLAHLLDRK 130
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLLIQRTIRKKFADCTVLTI 529
S GQRQ + + R +V + +LDE +N+D + + I+ + K T++ +
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 530 AH-RLHTIMDSDKVLVMD 546
H ++ + +DK++V+D
Sbjct: 191 THDQVEAMTLADKIVVLD 208
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRS 414
V K++N+ IH E + VG +G GKS+L+ I L + G + I + D P ++
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--R 75
Query: 415 NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV--ELKDMIMEGAGLNMTVYEG 471
+ ++ Q L+ ++ +N+ K L A +EV + + + E L +
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLK-----LAGAKKEVINQRVNQVAEVLQLAHLLDRK 130
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLLIQRTIRKKFADCTVLTI 529
S GQRQ + + R +V + +LDE +N+D + + I+ + K T++ +
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 530 AH-RLHTIMDSDKVLVMD 546
H ++ + +DK++V+D
Sbjct: 191 THDQVEAMTLADKIVVLD 208
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 37/178 (20%)
Query: 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKID--DID-T 404
+ + G ++K +++++ E + I+G +G+GKS+L+ + L A EG + ++ ++D T
Sbjct: 12 KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYT 71
Query: 405 EDVPLSKLRSNI--------SIIPQ--------DPVLFSGTLRKNLDPFEKYPDYVLWTA 448
+ LS LR+ +IP+ P+L G +K +Y
Sbjct: 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY-------L 124
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
L E+ L D L+ YE S G++Q + +ARA+ ++L DE T N+D
Sbjct: 125 LSELGLGDK------LSRKPYE----LSGGEQQRVAIARALANEPILLFADEPTGNLD 172
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRS 414
V K++N+ IH E + VG +G GKS+L+ I L + G + I + D P ++
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--R 75
Query: 415 NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV--ELKDMIMEGAGLNMTVYEG 471
+ ++ Q L+ ++ +N+ K L A +EV + + + E L +
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLK-----LAGAKKEVINQRVNQVAEVLQLAHLLDRK 130
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLLIQRTIRKKFADCTVLTI 529
S GQRQ + + R +V + +LD+ +N+D + + I+ + K T++ +
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 530 AH-RLHTIMDSDKVLVMD 546
H ++ + +DK++V+D
Sbjct: 191 THDQVEAMTLADKIVVLD 208
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 473 TNFSVGQRQLICLA---RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLT 528
T S G+ Q I LA R R + VLDE T + P +QR + K A TV+
Sbjct: 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788
Query: 529 IAHRLHTIMDSDKVL 543
+ H++ + SD VL
Sbjct: 789 VEHKMQVVAASDWVL 803
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVP--LSKLRSNISIIPQDPVLF 426
+ GI G G GKS+L AI +V+G ++ T V + S+ S++ D V
Sbjct: 463 RYGICGPNGCGKSTLXRAIAN-GQVDGFPTQEECRTVYVEHDIDGTHSDTSVL--DFVFE 519
Query: 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
SG K +KD ++E + + + S G + + LA
Sbjct: 520 SGVGTKEA-------------------IKDKLIEFGFTDEXIAXPISALSGGWKXKLALA 560
Query: 487 RAIVRNNVILVLDEATANVD 506
RA++RN IL+LDE T ++D
Sbjct: 561 RAVLRNADILLLDEPTNHLD 580
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVP--LSKLRSNISIIPQDPVLF 426
+ GI G G GKS+L AI +V+G ++ T V + S+ S++ D V
Sbjct: 457 RYGICGPNGCGKSTLXRAIAN-GQVDGFPTQEECRTVYVEHDIDGTHSDTSVL--DFVFE 513
Query: 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
SG K +KD ++E + + + S G + + LA
Sbjct: 514 SGVGTKEA-------------------IKDKLIEFGFTDEXIAXPISALSGGWKXKLALA 554
Query: 487 RAIVRNNVILVLDEATANVD 506
RA++RN IL+LDE T ++D
Sbjct: 555 RAVLRNADILLLDEPTNHLD 574
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVP--LSKLRSNISIIPQDPVLF 426
+ GI G G GKS+L+ AI +V+G ++ T V + S+ S++ D V
Sbjct: 463 RYGICGPNGCGKSTLMRAIAN-GQVDGFPTQEECRTVYVEHDIDGTHSDTSVL--DFVFE 519
Query: 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
SG K +KD ++E + + + S G + + LA
Sbjct: 520 SGVGTKEA-------------------IKDKLIEFGFTDEMIAMPISALSGGWKMKLALA 560
Query: 487 RAIVRNNVILVLDEATANVD 506
RA++RN IL+LDE T ++D
Sbjct: 561 RAVLRNADILLLDEPTNHLD 580
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 31/182 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
+E Q+ +V Y IK +++ + + + ++G GAGK++ ++AI L + G I
Sbjct: 7 LEVQSLHV-YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 400 DDIDTEDVPLSKL-RSNISIIPQDPVLF-----------SGTLRKNLDPFEKYPDYV--L 445
+ D + P + R I+++P+ +F RK+ + ++ +++ L
Sbjct: 66 NGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSL 125
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
+ L+E LK + GGT S G++Q + + RA+ +L DE + +
Sbjct: 126 FPRLKE-RLKQL-------------GGT-LSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
Query: 506 DP 507
P
Sbjct: 171 AP 172
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 19/152 (12%)
Query: 371 GIVGRTGAGKSSLIAAIFRLAEVEGVI-------KIDDIDT-EDVPLSKLR-SNISIIPQ 421
IVG + +GKS++I A+ + G I K D+ T + L K+R I+++PQ
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 422 DPVLFSGTLRKNLDPFEKYPDYV-----LWTALQEVELKDMIMEGAGLN--MTVYEGGTN 474
+L + E + D V W+ + +E + LN +
Sbjct: 98 ---AAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQ 154
Query: 475 FSVGQRQLICLARAIVRNNVILVLDEATANVD 506
S G +Q + +A A++ + V+L+LDE T+ +D
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+ S GQ+Q + +ARA+ +L+ DE T+ +DP+
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNI 416
++N+N+ ++ EK+ I+G G+GK++L+ AI L G I I+ ++ K+R+ I
Sbjct: 21 LENINLEVNG-EKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVR-----KIRNYI 74
Query: 417 SIIPQDPVLFSGTLRKN-----LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEG 471
P + + N + + + L+ ++L + I L +Y+
Sbjct: 75 RYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----LRRKLYK- 128
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLT 528
S GQ L+ + A+ I+ LDE NVD +I R I++ + ++T
Sbjct: 129 ---LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVT 182
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
+++ L++ +HP E I+G G+GKS+L A +
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 47
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC-TVLTIAHR 532
+ S G+ Q + +A A++RN DE ++ +D + L R IR+ + +VL + H
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 533 LHTI 536
L +
Sbjct: 218 LAVL 221
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
+++ L++ +HP E I+G G+GKS+L A +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 372 IVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD-PVLFSGTL 430
++G G GK++LI + G +K D+ +D+P + N+S+ PQ F GT+
Sbjct: 383 MMGENGTGKTTLIKLL------AGALKPDE--GQDIP----KLNVSMKPQKIAPKFPGTV 430
Query: 431 RKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490
R+ F+K L Q +K + ++ + + + S G+ Q + + A+
Sbjct: 431 RQLF--FKKIRGQFLNPQFQTDVVKPLRIDD-----IIDQEVQHLSGGELQRVAIVLALG 483
Query: 491 RNNVILVLDEATANVDPKTDLLIQRTIRK 519
I ++DE +A +D + ++ + IR+
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRR 512
>pdb|2H9A|A Chain A, Corrinoid Iron-Sulfur Protein
pdb|2YCL|A Chain A, Complete Structure Of The Corrinoid,Iron-Sulfur Protein
Including The N-Terminal Domain With A 4fe-4s Cluster
Length = 445
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 382 SLIAAIFRLAEVEGVIKIDDIDTEDV-PLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY 440
+++ A +A+ G+I ++ ++ D+ PL LR NI PQ P+ + + L+P
Sbjct: 275 AVMEASVYIAKYAGIIVLNTVEPADILPLITLRLNIYTDPQKPIAVEPKVYEILNPGPDA 334
Query: 441 PDYV 444
P ++
Sbjct: 335 PVFI 338
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 475 FSVGQRQLICLARAIVRNNVILVLDEATANVD 506
S G++Q + +ARA+ +L+LDE A +D
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
+NTN R ++ P +K L+ P + IVG GKS L+
Sbjct: 15 ENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLM 55
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
+NTN R ++ P +K L+ P + IVG GKS L+
Sbjct: 26 ENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLM 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,136,700
Number of Sequences: 62578
Number of extensions: 674635
Number of successful extensions: 2243
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2057
Number of HSP's gapped (non-prelim): 118
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)