Query psy1502
Match_columns 597
No_of_seqs 272 out of 3206
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:21:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 4E-108 8E-113 884.6 59.0 529 30-565 157-704 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2.9E-96 6E-101 822.4 66.1 545 14-565 148-708 (709)
3 KOG0055|consensus 100.0 1.5E-96 3E-101 835.2 62.7 499 65-566 709-1226(1228)
4 KOG0054|consensus 100.0 1.6E-94 3.5E-99 836.7 61.5 504 61-564 856-1374(1381)
5 PRK11174 cysteine/glutathione 100.0 4.7E-93 1E-97 801.9 69.6 546 17-567 15-586 (588)
6 COG1132 MdlB ABC-type multidru 100.0 3.8E-92 8.2E-97 790.7 68.0 536 21-566 15-565 (567)
7 PLN03130 ABC transporter C fam 100.0 3.2E-90 7E-95 840.6 74.0 514 64-577 954-1486(1622)
8 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-90 3.8E-95 843.8 70.5 502 65-566 1007-1521(1522)
9 KOG0055|consensus 100.0 1E-91 2.2E-96 795.7 49.2 498 63-565 71-588 (1228)
10 PLN03232 ABC transporter C fam 100.0 3E-89 6.4E-94 831.9 72.2 510 63-572 950-1478(1495)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.7E-88 8E-93 774.0 70.5 525 29-564 145-684 (686)
12 TIGR01193 bacteriocin_ABC ABC- 100.0 1.9E-88 4.1E-93 779.0 67.0 526 29-562 165-706 (708)
13 TIGR00958 3a01208 Conjugate Tr 100.0 3.4E-88 7.3E-93 774.8 67.5 516 28-552 169-693 (711)
14 PRK10790 putative multidrug tr 100.0 3.7E-87 8.1E-92 754.2 70.3 532 27-565 30-575 (592)
15 PTZ00265 multidrug resistance 100.0 6.7E-88 1.5E-92 813.3 67.9 527 34-565 839-1465(1466)
16 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.9E-87 4.1E-92 771.3 67.4 527 30-562 164-709 (710)
17 PTZ00243 ABC transporter; Prov 100.0 2.7E-87 5.9E-92 814.0 72.1 506 63-568 998-1549(1560)
18 TIGR01271 CFTR_protein cystic 100.0 2.3E-87 5E-92 814.1 70.0 506 67-572 929-1459(1490)
19 KOG0056|consensus 100.0 2.6E-90 5.7E-95 707.0 35.8 522 29-563 224-772 (790)
20 PRK11160 cysteine/glutathione 100.0 1.9E-86 4.1E-91 744.1 68.0 532 28-563 24-572 (574)
21 TIGR03375 type_I_sec_LssB type 100.0 1.9E-86 4.2E-91 760.8 69.4 527 27-563 154-688 (694)
22 PRK11176 lipid transporter ATP 100.0 4E-86 8.6E-91 744.9 68.9 488 72-564 74-578 (582)
23 TIGR02868 CydC thiol reductant 100.0 3.5E-86 7.6E-91 737.0 64.4 499 28-533 21-529 (529)
24 COG4988 CydD ABC-type transpor 100.0 7.5E-86 1.6E-90 699.9 63.5 531 31-566 11-556 (559)
25 KOG0057|consensus 100.0 2.8E-86 6E-91 692.2 56.4 528 34-566 44-587 (591)
26 TIGR01846 type_I_sec_HlyB type 100.0 9.9E-85 2.2E-89 746.2 68.7 528 29-564 148-691 (694)
27 PRK13657 cyclic beta-1,2-gluca 100.0 8.2E-84 1.8E-88 726.2 70.7 534 30-572 29-577 (588)
28 TIGR02203 MsbA_lipidA lipid A 100.0 7E-84 1.5E-88 725.4 67.8 516 29-552 23-547 (571)
29 TIGR02857 CydD thiol reductant 100.0 2.8E-83 6.1E-88 713.7 66.4 512 27-545 10-529 (529)
30 PRK10789 putative multidrug tr 100.0 1.1E-82 2.3E-87 713.6 67.1 530 29-565 4-550 (569)
31 TIGR01192 chvA glucan exporter 100.0 5.3E-82 1.2E-86 709.2 71.1 531 26-565 25-570 (585)
32 TIGR02204 MsbA_rel ABC transpo 100.0 7.5E-82 1.6E-86 709.5 67.6 531 28-563 26-573 (576)
33 COG5265 ATM1 ABC-type transpor 100.0 5.4E-84 1.2E-88 654.9 37.1 477 84-563 3-496 (497)
34 COG4987 CydC ABC-type transpor 100.0 6.7E-81 1.5E-85 651.5 58.8 480 78-563 73-571 (573)
35 TIGR01842 type_I_sec_PrtD type 100.0 2E-78 4.4E-83 676.1 68.5 514 24-552 10-533 (544)
36 PTZ00265 multidrug resistance 100.0 8.2E-79 1.8E-83 734.4 67.8 479 66-548 100-655 (1466)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.5E-78 2.1E-82 671.3 63.2 476 69-552 59-550 (555)
38 PRK10522 multidrug transporter 100.0 6.9E-74 1.5E-78 639.8 64.5 464 74-552 59-529 (547)
39 PLN03232 ABC transporter C fam 100.0 5.4E-72 1.2E-76 680.9 66.0 508 29-565 310-840 (1495)
40 PLN03130 ABC transporter C fam 100.0 2.4E-71 5.2E-76 675.4 67.1 457 88-564 366-839 (1622)
41 COG4618 ArpD ABC-type protease 100.0 8.6E-71 1.9E-75 570.4 49.1 522 17-552 16-551 (580)
42 TIGR00954 3a01203 Peroxysomal 100.0 4.7E-67 1E-71 593.6 56.6 496 33-547 109-653 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 7.1E-65 1.5E-69 619.4 67.4 513 30-563 327-860 (1522)
44 KOG0054|consensus 100.0 5.7E-64 1.2E-68 582.3 59.5 455 88-562 267-730 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 3.2E-62 6.9E-67 594.4 67.2 498 29-552 89-627 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 7.6E-59 1.6E-63 565.3 64.9 509 27-552 251-861 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.9E-56 1.5E-60 450.6 24.3 229 339-567 1-239 (275)
48 PRK14257 phosphate ABC transpo 100.0 7.6E-51 1.6E-55 424.0 25.4 220 335-562 75-312 (329)
49 COG1117 PstB ABC-type phosphat 100.0 2.7E-51 5.8E-56 383.6 17.5 206 340-552 7-228 (253)
50 COG1126 GlnQ ABC-type polar am 100.0 1.7E-50 3.8E-55 379.9 21.8 202 340-552 2-216 (240)
51 COG1135 AbcC ABC-type metal io 100.0 4.4E-50 9.6E-55 395.5 21.5 202 341-552 2-222 (339)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 4.3E-48 9.3E-53 391.7 27.3 216 337-552 16-234 (257)
53 cd03244 ABCC_MRP_domain2 Domai 100.0 3.2E-48 6.9E-53 384.0 25.6 214 339-552 1-217 (221)
54 cd03252 ABCC_Hemolysin The ABC 100.0 5.3E-48 1.1E-52 386.5 25.7 212 341-552 1-216 (237)
55 COG4615 PvdE ABC-type sideroph 100.0 7.2E-45 1.6E-49 365.9 44.5 468 66-552 51-528 (546)
56 COG1125 OpuBA ABC-type proline 100.0 4.7E-48 1E-52 370.4 19.2 205 341-552 2-216 (309)
57 cd03254 ABCC_Glucan_exporter_l 100.0 3.5E-47 7.6E-52 378.6 24.8 213 340-552 2-217 (229)
58 cd03253 ABCC_ATM1_transporter 100.0 4.6E-47 1E-51 379.5 25.6 212 341-552 1-215 (236)
59 cd03251 ABCC_MsbA MsbA is an e 100.0 9.8E-47 2.1E-51 376.6 24.7 212 341-552 1-216 (234)
60 cd03245 ABCC_bacteriocin_expor 100.0 1.4E-46 3.1E-51 371.9 25.0 213 340-552 2-218 (220)
61 COG1136 SalX ABC-type antimicr 100.0 1.5E-46 3.3E-51 363.8 22.8 202 341-552 2-222 (226)
62 COG4178 ABC-type uncharacteriz 100.0 2.4E-43 5.1E-48 381.5 50.2 468 63-547 86-588 (604)
63 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.1E-46 8.8E-51 365.2 24.7 200 336-552 2-203 (207)
64 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-46 2.4E-51 364.8 19.6 197 340-552 3-213 (248)
65 PRK13631 cbiO cobalt transport 100.0 3.4E-46 7.3E-51 387.9 24.6 207 340-552 21-256 (320)
66 cd03248 ABCC_TAP TAP, the Tran 100.0 4.1E-46 8.8E-51 370.2 22.9 213 338-550 9-226 (226)
67 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.2E-46 1.6E-50 371.3 24.9 212 341-552 1-217 (238)
68 COG1120 FepC ABC-type cobalami 100.0 4.1E-46 8.8E-51 367.7 20.9 202 340-552 2-219 (258)
69 TIGR02314 ABC_MetN D-methionin 100.0 3.1E-46 6.6E-51 390.2 21.2 202 341-552 2-221 (343)
70 COG1124 DppF ABC-type dipeptid 100.0 3.8E-46 8.2E-51 357.7 19.7 204 340-552 3-222 (252)
71 TIGR00960 3a0501s02 Type II (G 100.0 3.3E-46 7.1E-51 368.3 19.4 200 341-550 2-216 (216)
72 cd03250 ABCC_MRP_domain1 Domai 100.0 1.1E-45 2.5E-50 361.2 22.8 196 341-549 1-204 (204)
73 cd03260 ABC_PstB_phosphate_tra 100.0 1E-45 2.2E-50 367.5 21.2 201 341-552 1-220 (227)
74 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-45 2.6E-50 369.0 21.3 201 341-552 1-217 (235)
75 COG3839 MalK ABC-type sugar tr 100.0 9.2E-46 2E-50 378.6 20.8 200 340-552 3-214 (338)
76 PRK14269 phosphate ABC transpo 100.0 1.4E-45 3.1E-50 370.9 21.5 205 341-552 3-221 (246)
77 COG1122 CbiO ABC-type cobalt t 100.0 2.3E-45 4.9E-50 362.2 21.7 203 340-552 3-219 (235)
78 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-45 2.7E-50 364.7 19.7 204 341-550 1-218 (218)
79 cd03226 ABC_cobalt_CbiO_domain 100.0 2.6E-45 5.6E-50 359.0 20.1 197 342-551 1-205 (205)
80 PRK13647 cbiO cobalt transport 100.0 3.4E-45 7.4E-50 373.6 21.7 203 340-552 4-218 (274)
81 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.6E-45 7.9E-50 359.1 20.7 199 340-552 4-219 (254)
82 COG3638 ABC-type phosphate/pho 100.0 1.9E-45 4.1E-50 350.2 17.9 203 340-552 3-228 (258)
83 cd03256 ABC_PhnC_transporter A 100.0 4.5E-45 9.7E-50 366.2 21.7 202 341-552 1-225 (241)
84 cd03290 ABCC_SUR1_N The SUR do 100.0 8.4E-45 1.8E-49 358.8 23.1 208 342-549 2-218 (218)
85 COG2884 FtsE Predicted ATPase 100.0 2.1E-45 4.6E-50 338.0 17.3 202 341-552 2-217 (223)
86 COG3840 ThiQ ABC-type thiamine 100.0 4.6E-45 1E-49 333.1 18.8 197 341-552 2-210 (231)
87 cd03259 ABC_Carb_Solutes_like 100.0 4.3E-45 9.2E-50 359.6 20.2 199 341-552 1-211 (213)
88 PRK13650 cbiO cobalt transport 100.0 6.3E-45 1.4E-49 372.6 22.1 203 340-552 4-220 (279)
89 cd03224 ABC_TM1139_LivF_branch 100.0 6.5E-45 1.4E-49 360.5 21.4 206 341-552 1-212 (222)
90 PRK11629 lolD lipoprotein tran 100.0 6.8E-45 1.5E-49 363.1 21.5 206 341-552 6-225 (233)
91 TIGR02673 FtsE cell division A 100.0 4.2E-45 9.2E-50 359.8 19.4 199 341-549 2-214 (214)
92 TIGR02315 ABC_phnC phosphonate 100.0 7.7E-45 1.7E-49 365.0 21.6 202 341-552 2-226 (243)
93 cd03292 ABC_FtsE_transporter F 100.0 5.6E-45 1.2E-49 358.9 20.2 200 341-550 1-214 (214)
94 PRK10744 pstB phosphate transp 100.0 1.3E-44 2.8E-49 367.0 23.1 208 338-552 11-235 (260)
95 TIGR02211 LolD_lipo_ex lipopro 100.0 9.1E-45 2E-49 359.3 21.4 205 341-551 2-220 (221)
96 PRK14273 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 366.0 22.6 206 340-552 7-229 (254)
97 PRK14242 phosphate transporter 100.0 9.1E-45 2E-49 366.7 21.5 206 340-552 6-228 (253)
98 cd03266 ABC_NatA_sodium_export 100.0 7.1E-45 1.5E-49 359.2 20.3 201 341-552 2-216 (218)
99 cd03263 ABC_subfamily_A The AB 100.0 1E-44 2.2E-49 358.6 21.0 201 341-552 1-212 (220)
100 cd03264 ABC_drug_resistance_li 100.0 9.6E-45 2.1E-49 356.5 20.7 199 341-552 1-209 (211)
101 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-44 2.4E-49 362.2 21.4 210 341-552 1-223 (236)
102 TIGR00972 3a0107s01c2 phosphat 100.0 1.3E-44 2.9E-49 364.1 21.6 205 341-552 2-223 (247)
103 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-44 2.9E-49 354.7 20.9 199 341-552 1-206 (208)
104 cd03225 ABC_cobalt_CbiO_domain 100.0 1E-44 2.2E-49 356.4 19.9 198 342-549 1-211 (211)
105 PRK14250 phosphate ABC transpo 100.0 2.6E-44 5.6E-49 360.7 23.3 202 340-552 3-212 (241)
106 PRK11650 ugpC glycerol-3-phosp 100.0 1.9E-44 4.2E-49 379.5 23.1 201 340-552 3-215 (356)
107 PRK11153 metN DL-methionine tr 100.0 3.3E-44 7.2E-49 376.9 24.6 206 341-552 2-221 (343)
108 PRK13637 cbiO cobalt transport 100.0 3.6E-44 7.8E-49 368.4 24.2 206 341-552 3-225 (287)
109 cd03247 ABCC_cytochrome_bd The 100.0 2E-44 4.3E-49 344.8 20.6 174 341-552 1-176 (178)
110 cd03257 ABC_NikE_OppD_transpor 100.0 2.1E-44 4.5E-49 358.3 21.4 206 341-552 2-226 (228)
111 cd03296 ABC_CysA_sulfate_impor 100.0 2.9E-44 6.3E-49 359.9 22.4 199 341-552 3-217 (239)
112 PRK14235 phosphate transporter 100.0 3.5E-44 7.6E-49 365.0 22.6 207 339-552 18-242 (267)
113 PRK13636 cbiO cobalt transport 100.0 3.2E-44 7E-49 368.1 22.3 203 340-552 5-222 (283)
114 PRK10908 cell division protein 100.0 8.1E-44 1.8E-48 352.7 24.3 202 341-552 2-217 (222)
115 PRK14267 phosphate ABC transpo 100.0 2.3E-44 5.1E-49 363.7 20.7 206 340-552 4-228 (253)
116 cd03246 ABCC_Protease_Secretio 100.0 3.8E-44 8.3E-49 341.2 20.8 170 341-550 1-173 (173)
117 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.5E-44 5.5E-49 355.9 20.3 197 341-552 1-214 (220)
118 COG3842 PotA ABC-type spermidi 100.0 1.1E-44 2.4E-49 372.7 18.3 200 340-552 5-217 (352)
119 cd03301 ABC_MalK_N The N-termi 100.0 2.5E-44 5.5E-49 354.1 20.1 199 341-552 1-211 (213)
120 PRK14240 phosphate transporter 100.0 4.5E-44 9.7E-49 361.0 22.3 207 339-552 2-225 (250)
121 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.2E-44 6.8E-49 360.3 21.1 206 341-552 1-216 (242)
122 PRK13646 cbiO cobalt transport 100.0 8.6E-44 1.9E-48 365.5 24.0 206 341-552 3-226 (286)
123 COG1127 Ttg2A ABC-type transpo 100.0 6.5E-44 1.4E-48 340.6 21.3 206 340-552 8-226 (263)
124 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.1E-44 1.1E-48 357.5 21.7 204 341-552 2-212 (236)
125 cd03258 ABC_MetN_methionine_tr 100.0 3.8E-44 8.2E-49 357.7 20.7 202 341-552 2-221 (233)
126 PRK13635 cbiO cobalt transport 100.0 5.4E-44 1.2E-48 365.6 22.0 202 341-552 6-220 (279)
127 PRK10584 putative ABC transpor 100.0 6.5E-44 1.4E-48 354.8 22.0 203 340-552 6-226 (228)
128 PRK14259 phosphate ABC transpo 100.0 9.7E-44 2.1E-48 362.1 23.7 202 339-547 12-228 (269)
129 PRK14239 phosphate transporter 100.0 5.6E-44 1.2E-48 360.7 21.7 206 340-552 5-227 (252)
130 PRK13643 cbiO cobalt transport 100.0 1.1E-43 2.3E-48 365.0 24.1 206 341-552 2-224 (288)
131 PRK14247 phosphate ABC transpo 100.0 5.5E-44 1.2E-48 360.4 21.6 206 340-552 3-225 (250)
132 cd03262 ABC_HisP_GlnQ_permease 100.0 8.6E-44 1.9E-48 350.2 22.3 203 341-550 1-213 (213)
133 PRK14251 phosphate ABC transpo 100.0 4.3E-44 9.2E-49 361.4 20.6 206 340-552 4-226 (251)
134 PRK14245 phosphate ABC transpo 100.0 4.4E-44 9.6E-49 361.0 20.7 206 340-552 3-225 (250)
135 PRK14274 phosphate ABC transpo 100.0 9.2E-44 2E-48 360.5 22.7 206 340-552 12-234 (259)
136 PRK14237 phosphate transporter 100.0 1.1E-43 2.3E-48 361.5 23.1 206 340-552 20-242 (267)
137 PRK13632 cbiO cobalt transport 100.0 9.8E-44 2.1E-48 362.5 22.8 203 340-552 7-222 (271)
138 cd03235 ABC_Metallic_Cations A 100.0 4.3E-44 9.3E-49 352.4 19.3 193 342-550 1-210 (213)
139 PRK13644 cbiO cobalt transport 100.0 1.1E-43 2.5E-48 362.4 22.8 202 341-552 2-215 (274)
140 TIGR03410 urea_trans_UrtE urea 100.0 6.5E-44 1.4E-48 355.3 20.5 203 341-552 1-212 (230)
141 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-43 2.6E-48 348.7 22.1 197 341-552 1-209 (211)
142 PRK14236 phosphate transporter 100.0 1.2E-43 2.6E-48 362.1 22.5 207 339-552 24-247 (272)
143 PRK11432 fbpC ferric transport 100.0 1.5E-43 3.4E-48 371.6 23.9 200 340-552 6-217 (351)
144 PRK14249 phosphate ABC transpo 100.0 1.5E-43 3.2E-48 357.5 22.9 206 340-552 4-226 (251)
145 cd03218 ABC_YhbG The ABC trans 100.0 8.7E-44 1.9E-48 354.9 20.7 205 341-552 1-213 (232)
146 PRK11247 ssuB aliphatic sulfon 100.0 1.8E-43 3.9E-48 357.0 23.1 197 340-552 12-214 (257)
147 PRK14244 phosphate ABC transpo 100.0 5.4E-44 1.2E-48 360.6 19.2 204 342-552 7-228 (251)
148 PRK14268 phosphate ABC transpo 100.0 9.1E-44 2E-48 360.3 20.8 206 340-552 12-233 (258)
149 PRK14256 phosphate ABC transpo 100.0 1.4E-43 3E-48 357.8 22.0 207 339-552 3-227 (252)
150 PRK13634 cbiO cobalt transport 100.0 2E-43 4.4E-48 363.4 23.6 206 341-552 3-226 (290)
151 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.9E-43 1.3E-47 357.0 26.8 199 338-552 37-238 (282)
152 PRK14248 phosphate ABC transpo 100.0 1.3E-43 2.8E-48 361.2 21.3 206 340-552 21-243 (268)
153 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-43 2.5E-48 351.1 20.3 200 341-552 1-212 (220)
154 cd03269 ABC_putative_ATPase Th 100.0 8.7E-44 1.9E-48 349.5 19.1 201 341-552 1-208 (210)
155 PRK14253 phosphate ABC transpo 100.0 2E-43 4.4E-48 356.0 22.3 206 340-552 3-224 (249)
156 PRK13652 cbiO cobalt transport 100.0 2.1E-43 4.6E-48 361.1 22.7 202 341-552 4-218 (277)
157 PRK14261 phosphate ABC transpo 100.0 1.7E-43 3.6E-48 357.4 21.6 206 340-552 6-228 (253)
158 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-43 2.6E-48 373.0 21.3 204 340-552 4-215 (353)
159 TIGR01186 proV glycine betaine 100.0 7.2E-44 1.6E-48 374.4 19.5 190 353-552 5-210 (363)
160 PRK11231 fecE iron-dicitrate t 100.0 2E-43 4.2E-48 357.3 21.9 201 341-552 3-218 (255)
161 TIGR02769 nickel_nikE nickel i 100.0 1.8E-43 3.9E-48 359.5 21.7 206 341-552 3-231 (265)
162 TIGR03005 ectoine_ehuA ectoine 100.0 1.8E-43 3.9E-48 357.0 21.5 205 341-552 1-227 (252)
163 PRK10247 putative ABC transpor 100.0 1.9E-43 4E-48 350.8 20.8 202 340-552 7-219 (225)
164 PRK10575 iron-hydroxamate tran 100.0 1.9E-43 4.2E-48 359.3 21.4 202 340-552 11-228 (265)
165 PRK13651 cobalt transporter AT 100.0 4.4E-43 9.6E-48 362.4 24.3 206 341-552 3-245 (305)
166 PRK13648 cbiO cobalt transport 100.0 2.1E-43 4.6E-48 359.8 21.6 203 340-552 7-222 (269)
167 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.8E-44 2.1E-48 362.0 18.9 200 342-552 26-241 (269)
168 TIGR03411 urea_trans_UrtD urea 100.0 3.5E-43 7.6E-48 352.8 22.7 210 341-552 3-222 (242)
169 PRK14262 phosphate ABC transpo 100.0 2E-43 4.4E-48 356.2 20.9 206 340-552 3-225 (250)
170 PRK09493 glnQ glutamine ABC tr 100.0 5.2E-43 1.1E-47 351.1 23.6 205 341-552 2-216 (240)
171 PRK11124 artP arginine transpo 100.0 2.7E-43 5.8E-48 353.6 21.5 205 341-552 3-221 (242)
172 PRK14243 phosphate transporter 100.0 4.4E-43 9.6E-48 356.4 23.4 206 340-552 10-239 (264)
173 PRK13649 cbiO cobalt transport 100.0 4.6E-43 9.9E-48 359.4 23.6 206 341-552 3-225 (280)
174 PRK11264 putative amino-acid A 100.0 5.9E-43 1.3E-47 352.8 24.1 205 341-552 4-224 (250)
175 PRK10895 lipopolysaccharide AB 100.0 3.8E-43 8.2E-48 352.3 22.4 205 341-552 4-217 (241)
176 PRK10851 sulfate/thiosulfate t 100.0 3.3E-43 7E-48 369.8 22.9 199 341-552 3-217 (353)
177 PRK11614 livF leucine/isoleuci 100.0 3.8E-43 8.3E-48 351.4 22.3 207 340-552 5-217 (237)
178 PRK09536 btuD corrinoid ABC tr 100.0 3E-43 6.6E-48 374.0 22.7 202 340-552 3-219 (402)
179 PRK13642 cbiO cobalt transport 100.0 6.2E-43 1.3E-47 357.6 24.2 203 340-552 4-220 (277)
180 PRK14238 phosphate transporter 100.0 7.2E-43 1.6E-47 356.1 24.4 206 340-552 24-246 (271)
181 PRK13640 cbiO cobalt transport 100.0 4.1E-43 8.9E-48 359.8 22.5 203 340-552 5-223 (282)
182 PRK14255 phosphate ABC transpo 100.0 2.5E-43 5.3E-48 356.0 20.6 206 340-552 5-227 (252)
183 PRK14270 phosphate ABC transpo 100.0 4E-43 8.7E-48 354.2 22.1 206 340-552 4-226 (251)
184 PRK14271 phosphate ABC transpo 100.0 6.8E-43 1.5E-47 356.9 23.8 207 340-552 21-242 (276)
185 PRK11000 maltose/maltodextrin 100.0 3.3E-43 7.2E-48 372.4 22.2 200 340-552 3-214 (369)
186 PRK14260 phosphate ABC transpo 100.0 3.7E-43 8E-48 356.1 21.5 206 340-552 7-234 (259)
187 PRK13645 cbiO cobalt transport 100.0 4.3E-43 9.3E-48 361.1 22.1 209 338-552 4-231 (289)
188 PRK10619 histidine/lysine/argi 100.0 4E-43 8.7E-48 355.5 21.3 207 339-552 4-232 (257)
189 PRK14254 phosphate ABC transpo 100.0 4.9E-43 1.1E-47 359.5 21.5 206 340-552 39-260 (285)
190 PRK14266 phosphate ABC transpo 100.0 6E-43 1.3E-47 352.8 21.8 205 341-552 4-225 (250)
191 PRK15079 oligopeptide ABC tran 100.0 1.3E-42 2.9E-47 362.4 24.9 207 340-552 8-242 (331)
192 PRK14252 phosphate ABC transpo 100.0 8.5E-43 1.8E-47 354.6 22.7 208 338-552 14-240 (265)
193 PRK13548 hmuV hemin importer A 100.0 1.4E-42 3E-47 351.5 24.1 201 341-552 3-221 (258)
194 PRK11300 livG leucine/isoleuci 100.0 9.2E-43 2E-47 352.5 22.8 209 340-552 5-234 (255)
195 PRK13638 cbiO cobalt transport 100.0 6.6E-43 1.4E-47 356.5 21.8 201 341-552 2-216 (271)
196 TIGR01277 thiQ thiamine ABC tr 100.0 8.1E-43 1.7E-47 343.4 21.6 197 341-552 1-209 (213)
197 PRK13633 cobalt transporter AT 100.0 6E-43 1.3E-47 358.3 21.4 203 340-552 4-224 (280)
198 TIGR03258 PhnT 2-aminoethylpho 100.0 1E-42 2.2E-47 366.6 23.7 202 338-552 3-219 (362)
199 PRK10253 iron-enterobactin tra 100.0 7.9E-43 1.7E-47 354.8 22.1 202 340-552 7-224 (265)
200 PRK09452 potA putrescine/sperm 100.0 6.5E-43 1.4E-47 369.4 22.2 200 340-552 14-225 (375)
201 PRK13639 cbiO cobalt transport 100.0 6E-43 1.3E-47 357.4 21.2 202 341-552 2-217 (275)
202 PRK14241 phosphate transporter 100.0 8E-43 1.7E-47 353.5 21.6 206 340-552 4-233 (258)
203 TIGR03873 F420-0_ABC_ATP propo 100.0 9.4E-43 2E-47 352.6 22.0 201 341-552 2-217 (256)
204 TIGR02982 heterocyst_DevA ABC 100.0 5.9E-43 1.3E-47 346.1 19.8 204 341-550 2-219 (220)
205 cd03229 ABC_Class3 This class 100.0 1E-42 2.2E-47 333.0 20.7 171 341-549 1-178 (178)
206 cd03230 ABC_DR_subfamily_A Thi 100.0 1E-42 2.3E-47 331.4 20.3 169 341-550 1-173 (173)
207 cd03234 ABCG_White The White s 100.0 8.2E-43 1.8E-47 346.5 20.4 208 341-552 4-224 (226)
208 PRK14265 phosphate ABC transpo 100.0 1.9E-42 4E-47 353.5 23.5 206 340-552 20-249 (274)
209 PRK11831 putative ABC transpor 100.0 1.8E-42 3.9E-47 352.9 23.2 202 340-552 7-224 (269)
210 PRK14275 phosphate ABC transpo 100.0 8.7E-43 1.9E-47 357.9 21.0 206 340-552 39-261 (286)
211 PRK11022 dppD dipeptide transp 100.0 1.8E-42 4E-47 361.1 23.5 205 341-552 4-234 (326)
212 PRK14258 phosphate ABC transpo 100.0 1.4E-42 3E-47 352.2 21.6 207 339-552 6-236 (261)
213 TIGR01288 nodI ATP-binding ABC 100.0 1.8E-42 3.9E-47 358.6 22.8 205 340-552 4-215 (303)
214 PRK14272 phosphate ABC transpo 100.0 1.6E-42 3.4E-47 350.1 21.7 206 340-552 4-227 (252)
215 PRK13537 nodulation ABC transp 100.0 1.3E-42 2.9E-47 359.4 21.6 201 340-552 7-218 (306)
216 PRK14264 phosphate ABC transpo 100.0 1.9E-42 4.2E-47 358.4 22.6 206 340-552 45-280 (305)
217 PRK13641 cbiO cobalt transport 100.0 3.7E-42 8E-47 353.6 24.4 206 341-552 3-225 (287)
218 cd03228 ABCC_MRP_Like The MRP 100.0 1.8E-42 3.9E-47 329.1 20.4 169 341-549 1-171 (171)
219 PRK14263 phosphate ABC transpo 100.0 2.1E-42 4.6E-47 350.6 22.1 205 341-552 9-236 (261)
220 TIGR00968 3a0106s01 sulfate AB 100.0 2.2E-42 4.7E-47 345.9 21.7 199 341-552 1-211 (237)
221 TIGR01978 sufC FeS assembly AT 100.0 1.5E-42 3.3E-47 348.3 20.7 205 341-552 1-225 (243)
222 PRK10771 thiQ thiamine transpo 100.0 4.7E-42 1E-46 342.4 23.9 197 341-552 2-210 (232)
223 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-42 2.3E-47 347.0 19.2 199 341-552 1-211 (232)
224 PRK11248 tauB taurine transpor 100.0 2.5E-42 5.4E-47 348.8 22.1 200 341-552 2-211 (255)
225 PRK11308 dppF dipeptide transp 100.0 2.8E-42 6E-47 359.6 22.6 204 340-552 5-235 (327)
226 cd03223 ABCD_peroxisomal_ALDP 100.0 2.4E-42 5.2E-47 326.5 19.9 163 341-549 1-164 (166)
227 PRK09473 oppD oligopeptide tra 100.0 4.6E-42 1E-46 358.4 24.0 206 340-552 12-242 (330)
228 PRK15112 antimicrobial peptide 100.0 2.6E-42 5.7E-47 351.2 21.6 203 341-552 5-230 (267)
229 PRK13547 hmuV hemin importer A 100.0 4.3E-42 9.3E-47 349.8 23.0 201 341-552 2-235 (272)
230 PRK10070 glycine betaine trans 100.0 2.7E-42 5.8E-47 366.5 21.8 188 355-552 42-245 (400)
231 TIGR03522 GldA_ABC_ATP gliding 100.0 7.2E-42 1.6E-46 353.7 24.3 204 341-552 3-212 (301)
232 PRK11607 potG putrescine trans 100.0 3.3E-42 7.2E-47 364.6 22.2 200 340-552 19-230 (377)
233 cd03232 ABC_PDR_domain2 The pl 100.0 2.5E-42 5.4E-47 334.3 18.5 177 340-552 3-190 (192)
234 cd03233 ABC_PDR_domain1 The pl 100.0 5.3E-42 1.1E-46 334.6 20.7 185 341-552 4-200 (202)
235 PRK11701 phnK phosphonate C-P 100.0 1.2E-41 2.6E-46 344.9 24.1 206 340-552 6-232 (258)
236 cd03215 ABC_Carb_Monos_II This 100.0 3.9E-42 8.5E-47 330.1 19.1 170 341-550 5-182 (182)
237 PRK09984 phosphonate/organopho 100.0 6.5E-42 1.4E-46 347.6 21.6 202 340-552 4-233 (262)
238 PRK10418 nikD nickel transport 100.0 1.1E-41 2.3E-46 344.4 22.3 202 340-552 4-221 (254)
239 PRK13536 nodulation factor exp 100.0 1.6E-41 3.4E-46 355.3 24.3 205 340-552 41-252 (340)
240 PRK15093 antimicrobial peptide 100.0 6.7E-42 1.5E-46 357.8 21.3 205 341-552 4-239 (330)
241 cd03213 ABCG_EPDR ABCG transpo 100.0 6.6E-42 1.4E-46 331.8 19.5 178 340-552 3-192 (194)
242 PRK10419 nikE nickel transport 100.0 9.3E-42 2E-46 347.3 21.6 206 341-552 4-232 (268)
243 COG1131 CcmA ABC-type multidru 100.0 8.3E-42 1.8E-46 350.5 21.1 202 340-552 4-217 (293)
244 PRK14246 phosphate ABC transpo 100.0 1.2E-41 2.7E-46 344.2 21.6 206 340-552 10-232 (257)
245 TIGR03608 L_ocin_972_ABC putat 100.0 5.8E-42 1.3E-46 335.4 18.2 192 343-545 1-206 (206)
246 TIGR01188 drrA daunorubicin re 100.0 9.2E-42 2E-46 353.2 20.0 192 349-552 2-204 (302)
247 cd03299 ABC_ModC_like Archeal 100.0 1.7E-41 3.6E-46 339.0 21.0 198 341-552 1-210 (235)
248 cd03297 ABC_ModC_molybdenum_tr 100.0 2E-41 4.3E-46 333.7 20.9 201 341-552 2-212 (214)
249 PRK11144 modC molybdate transp 100.0 2.3E-41 4.9E-46 356.7 21.9 198 341-552 2-209 (352)
250 TIGR03740 galliderm_ABC gallid 100.0 3.1E-41 6.7E-46 334.5 21.3 197 341-552 1-204 (223)
251 cd03214 ABC_Iron-Siderophores_ 100.0 2.3E-41 5E-46 324.2 18.8 174 342-552 1-178 (180)
252 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-41 2.4E-46 335.3 16.5 200 340-552 2-218 (345)
253 cd03216 ABC_Carb_Monos_I This 100.0 7.6E-41 1.6E-45 315.3 21.0 158 341-552 1-162 (163)
254 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.8E-41 1.3E-45 326.8 20.7 177 341-552 1-185 (200)
255 TIGR02323 CP_lyasePhnK phospho 100.0 5.4E-41 1.2E-45 339.2 21.1 206 340-552 3-229 (253)
256 PRK15056 manganese/iron transp 100.0 7.7E-41 1.7E-45 341.4 22.2 198 340-552 6-221 (272)
257 TIGR03415 ABC_choXWV_ATP choli 100.0 5.2E-41 1.1E-45 354.3 21.4 189 354-552 37-245 (382)
258 PRK09580 sufC cysteine desulfu 100.0 1.3E-40 2.8E-45 335.4 21.6 211 341-552 2-226 (248)
259 TIGR02142 modC_ABC molybdenum 100.0 1.4E-40 2.9E-45 351.3 22.3 199 345-552 4-212 (354)
260 cd03231 ABC_CcmA_heme_exporter 100.0 1.6E-40 3.5E-45 324.0 21.1 193 341-545 1-198 (201)
261 PRK03695 vitamin B12-transport 100.0 1.5E-40 3.3E-45 334.7 21.3 200 342-552 2-213 (248)
262 PRK13540 cytochrome c biogenes 100.0 9.8E-41 2.1E-45 325.3 19.3 192 341-544 2-198 (200)
263 PRK13538 cytochrome c biogenes 100.0 1.3E-40 2.7E-45 325.6 19.9 193 341-545 2-202 (204)
264 COG4619 ABC-type uncharacteriz 100.0 2E-41 4.3E-46 305.2 12.7 192 352-552 14-214 (223)
265 PRK09544 znuC high-affinity zi 100.0 2.8E-40 6E-45 332.9 22.5 190 340-552 4-200 (251)
266 CHL00131 ycf16 sulfate ABC tra 100.0 3.7E-40 8E-45 332.9 22.5 209 340-552 7-232 (252)
267 PRK13549 xylose transporter AT 100.0 6.7E-40 1.5E-44 362.9 24.5 206 340-552 5-223 (506)
268 PRK13539 cytochrome c biogenes 100.0 7E-40 1.5E-44 321.0 20.5 192 341-547 3-200 (207)
269 TIGR01184 ntrCD nitrate transp 100.0 4.1E-40 9E-45 327.8 18.5 185 357-552 1-195 (230)
270 PRK13543 cytochrome c biogenes 100.0 8.8E-40 1.9E-44 322.0 20.2 194 340-547 11-212 (214)
271 cd03267 ABC_NatA_like Similar 100.0 8.6E-40 1.9E-44 326.8 20.4 192 354-552 34-234 (236)
272 PRK11288 araG L-arabinose tran 100.0 1.1E-39 2.3E-44 360.8 23.1 206 340-552 4-220 (501)
273 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-39 6.3E-44 357.8 25.2 202 340-552 11-220 (510)
274 KOG0060|consensus 100.0 7.2E-37 1.6E-41 321.9 41.8 470 67-548 126-642 (659)
275 PRK10762 D-ribose transporter 100.0 2.5E-39 5.4E-44 357.9 24.7 205 341-552 5-221 (501)
276 TIGR01189 ccmA heme ABC export 100.0 9.1E-40 2E-44 318.0 18.6 191 341-544 1-197 (198)
277 PRK09700 D-allose transporter 100.0 2.7E-39 5.8E-44 358.5 24.5 206 340-552 5-225 (510)
278 TIGR02770 nickel_nikD nickel i 100.0 5.2E-40 1.1E-44 327.2 16.8 188 356-552 1-206 (230)
279 PRK10982 galactose/methyl gala 100.0 2.8E-39 6.1E-44 356.8 23.4 203 343-552 1-214 (491)
280 COG1123 ATPase components of v 100.0 1.6E-39 3.5E-44 347.6 20.6 203 340-552 280-510 (539)
281 TIGR02324 CP_lyasePhnL phospho 100.0 1.9E-39 4E-44 322.0 19.1 199 341-545 2-222 (224)
282 PRK15134 microcin C ABC transp 100.0 1.2E-39 2.5E-44 362.9 19.6 207 340-552 275-506 (529)
283 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-39 3.2E-44 301.9 15.9 201 341-552 2-213 (245)
284 PRK10938 putative molybdenum t 100.0 3.5E-39 7.6E-44 356.0 21.8 200 341-552 4-215 (490)
285 TIGR02633 xylG D-xylose ABC tr 100.0 5.2E-39 1.1E-43 355.5 23.3 205 341-552 2-221 (500)
286 PRK13541 cytochrome c biogenes 100.0 2.5E-39 5.5E-44 314.1 18.1 187 341-543 2-193 (195)
287 PRK10261 glutathione transport 100.0 4E-39 8.7E-44 363.9 22.6 203 340-552 313-544 (623)
288 TIGR01166 cbiO cobalt transpor 100.0 3.5E-39 7.7E-44 311.8 18.4 174 352-535 3-189 (190)
289 PRK15134 microcin C ABC transp 100.0 4.2E-39 9E-44 358.4 21.4 206 340-552 5-237 (529)
290 COG0444 DppD ABC-type dipeptid 100.0 7.6E-39 1.6E-43 320.5 20.6 205 341-552 2-234 (316)
291 COG0410 LivF ABC-type branched 100.0 1.3E-38 2.9E-43 303.7 20.3 206 341-552 4-217 (237)
292 PRK10261 glutathione transport 100.0 9.2E-39 2E-43 361.0 21.5 207 340-552 12-249 (623)
293 PLN03211 ABC transporter G-25; 100.0 1.6E-38 3.5E-43 358.9 23.3 190 354-552 81-287 (659)
294 PRK10535 macrolide transporter 100.0 1.9E-38 4E-43 359.8 22.4 207 340-552 4-223 (648)
295 COG4172 ABC-type uncharacteriz 100.0 2.7E-38 5.8E-43 319.8 20.9 204 340-552 276-507 (534)
296 PRK13549 xylose transporter AT 100.0 1.9E-38 4.1E-43 351.3 21.6 207 340-552 259-485 (506)
297 COG4181 Predicted ABC-type tra 100.0 1.9E-38 4.1E-43 286.9 17.1 206 340-552 6-226 (228)
298 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.9E-38 8.4E-43 312.3 21.1 194 341-552 23-222 (224)
299 COG1123 ATPase components of v 100.0 1.8E-38 3.9E-43 339.6 19.8 205 340-552 5-235 (539)
300 TIGR03269 met_CoM_red_A2 methy 100.0 3.4E-38 7.3E-43 350.6 21.5 205 341-552 1-249 (520)
301 PRK09700 D-allose transporter 100.0 6.5E-38 1.4E-42 347.5 23.1 204 340-552 265-489 (510)
302 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-38 2.3E-43 360.1 17.1 204 340-552 17-247 (617)
303 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-38 5.1E-43 351.8 19.5 207 340-552 279-508 (520)
304 COG4608 AppF ABC-type oligopep 100.0 3.1E-38 6.7E-43 309.9 17.6 174 341-552 5-190 (268)
305 TIGR00956 3a01205 Pleiotropic 100.0 8.1E-38 1.7E-42 378.3 22.8 203 340-552 759-984 (1394)
306 TIGR03771 anch_rpt_ABC anchore 100.0 5.2E-38 1.1E-42 311.3 17.4 175 362-552 1-192 (223)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.8E-37 3.8E-42 286.2 18.5 142 341-549 1-144 (144)
308 PRK13545 tagH teichoic acids e 100.0 4.4E-37 9.5E-42 330.2 24.1 190 340-552 21-223 (549)
309 TIGR02633 xylG D-xylose ABC tr 100.0 2.1E-37 4.5E-42 342.8 22.0 212 340-552 257-483 (500)
310 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-37 6.5E-42 344.9 23.1 199 340-552 4-238 (552)
311 COG1129 MglA ABC-type sugar tr 100.0 4.6E-37 9.9E-42 326.8 23.1 202 341-552 9-225 (500)
312 COG4175 ProV ABC-type proline/ 100.0 1.2E-37 2.7E-42 306.8 17.1 187 356-552 43-245 (386)
313 PRK13546 teichoic acids export 100.0 7.3E-37 1.6E-41 309.9 23.1 180 354-552 37-223 (264)
314 cd03236 ABC_RNaseL_inhibitor_d 100.0 1E-37 2.3E-42 314.3 16.5 197 344-552 4-218 (255)
315 COG0411 LivG ABC-type branched 100.0 1.4E-37 3E-42 298.9 16.1 208 341-552 5-230 (250)
316 PRK10762 D-ribose transporter 100.0 3.2E-37 6.8E-42 341.1 21.3 201 340-552 257-475 (501)
317 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.5E-37 5.3E-42 310.3 18.3 182 348-551 1-195 (246)
318 PRK15064 ABC transporter ATP-b 100.0 5.4E-37 1.2E-41 341.6 22.9 196 341-551 2-231 (530)
319 PRK11819 putative ABC transpor 100.0 1.3E-36 2.9E-41 339.8 25.2 199 340-552 6-240 (556)
320 PRK10938 putative molybdenum t 100.0 2.2E-37 4.8E-42 341.7 17.9 202 340-552 260-483 (490)
321 TIGR01257 rim_protein retinal- 100.0 1.1E-36 2.3E-41 369.2 24.9 206 340-552 928-1140(2272)
322 COG1137 YhbG ABC-type (unclass 100.0 9.6E-38 2.1E-42 289.5 11.8 211 340-552 4-219 (243)
323 PRK15064 ABC transporter ATP-b 100.0 1.7E-36 3.7E-41 337.6 23.1 200 340-563 319-525 (530)
324 PRK11288 araG L-arabinose tran 100.0 7.8E-37 1.7E-41 338.0 20.0 202 340-552 257-476 (501)
325 COG4559 ABC-type hemin transpo 100.0 1.4E-36 3.1E-41 284.1 18.2 201 341-552 2-221 (259)
326 COG4525 TauB ABC-type taurine 100.0 2.3E-36 4.9E-41 278.9 18.6 214 341-567 4-230 (259)
327 PRK10982 galactose/methyl gala 100.0 4.4E-36 9.6E-41 331.3 22.5 204 340-552 250-471 (491)
328 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.2E-36 1.1E-40 280.7 19.2 154 342-549 1-157 (157)
329 COG4161 ArtP ABC-type arginine 100.0 1.7E-36 3.7E-41 271.4 15.0 202 340-552 2-221 (242)
330 COG3845 ABC-type uncharacteriz 100.0 6.5E-36 1.4E-40 311.6 20.3 209 340-552 4-220 (501)
331 PRK15439 autoinducer 2 ABC tra 100.0 5.6E-36 1.2E-40 331.6 20.6 201 340-552 268-483 (510)
332 TIGR01257 rim_protein retinal- 100.0 1E-35 2.2E-40 360.8 24.5 203 339-552 1936-2150(2272)
333 TIGR01187 potA spermidine/putr 100.0 2.6E-36 5.7E-41 315.0 16.5 169 372-552 1-181 (325)
334 COG4598 HisP ABC-type histidin 100.0 2.4E-36 5.1E-41 275.2 13.6 205 340-552 6-232 (256)
335 PRK15177 Vi polysaccharide exp 100.0 2.7E-36 5.8E-41 296.7 15.2 174 356-552 2-183 (213)
336 PRK11819 putative ABC transpor 100.0 2.2E-35 4.8E-40 330.0 23.2 216 340-581 324-550 (556)
337 cd03222 ABC_RNaseL_inhibitor T 100.0 1.5E-35 3.3E-40 281.4 16.8 144 344-551 4-151 (177)
338 PLN03140 ABC transporter G fam 100.0 2.6E-35 5.6E-40 355.4 22.4 204 340-552 867-1101(1470)
339 COG4148 ModC ABC-type molybdat 100.0 1E-35 2.2E-40 288.6 14.7 184 359-552 16-209 (352)
340 COG1101 PhnK ABC-type uncharac 100.0 1.4E-35 3E-40 278.1 15.1 200 351-552 16-229 (263)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.3E-35 1.2E-39 326.8 22.4 196 340-560 322-528 (552)
342 PLN03073 ABC transporter F fam 100.0 6.1E-35 1.3E-39 331.6 21.6 190 340-552 508-704 (718)
343 cd03238 ABC_UvrA The excision 100.0 1E-34 2.2E-39 275.4 18.2 156 353-550 7-166 (176)
344 PRK11147 ABC transporter ATPas 100.0 1.6E-34 3.6E-39 327.4 21.5 189 340-552 319-518 (635)
345 PRK10636 putative ABC transpor 100.0 2.3E-34 5.1E-39 325.5 20.9 189 340-552 312-507 (638)
346 PRK10636 putative ABC transpor 100.0 8.5E-34 1.8E-38 321.0 24.7 198 341-552 2-226 (638)
347 PRK13409 putative ATPase RIL; 100.0 4.3E-34 9.3E-39 319.2 19.8 187 340-552 340-533 (590)
348 COG4172 ABC-type uncharacteriz 100.0 5.1E-34 1.1E-38 288.8 17.4 205 341-552 7-238 (534)
349 COG1119 ModF ABC-type molybden 100.0 1.4E-33 3E-38 271.3 18.3 205 340-552 31-253 (257)
350 PRK11147 ABC transporter ATPas 100.0 7.2E-33 1.6E-37 314.0 25.4 196 341-552 4-233 (635)
351 COG4604 CeuD ABC-type enteroch 100.0 4.6E-34 9.9E-39 264.2 11.3 201 341-552 2-216 (252)
352 PRK13409 putative ATPase RIL; 100.0 5.4E-34 1.2E-38 318.4 13.9 192 344-548 77-287 (590)
353 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-33 4.5E-38 340.0 17.3 193 355-552 75-291 (1394)
354 PLN03073 ABC transporter F fam 100.0 1.3E-32 2.8E-37 312.7 20.9 211 339-552 176-421 (718)
355 PF00005 ABC_tran: ABC transpo 100.0 2.6E-33 5.6E-38 256.0 11.4 135 357-503 1-137 (137)
356 PLN03140 ABC transporter G fam 100.0 7.8E-33 1.7E-37 334.0 14.6 196 354-552 178-418 (1470)
357 KOG0064|consensus 100.0 6.5E-29 1.4E-33 258.4 41.4 447 84-545 178-681 (728)
358 COG0488 Uup ATPase components 100.0 1.6E-31 3.4E-36 291.5 22.5 198 340-552 3-230 (530)
359 COG4167 SapF ABC-type antimicr 100.0 5.6E-32 1.2E-36 247.2 15.4 203 341-552 5-230 (267)
360 COG4152 ABC-type uncharacteriz 100.0 3.2E-32 6.9E-37 259.9 14.3 200 340-552 2-210 (300)
361 COG0396 sufC Cysteine desulfur 100.0 7.4E-31 1.6E-35 249.5 20.4 205 341-553 4-226 (251)
362 COG4136 ABC-type uncharacteriz 100.0 2.1E-31 4.7E-36 236.1 15.4 193 340-545 2-207 (213)
363 KOG0061|consensus 100.0 3.6E-31 7.8E-36 296.3 20.0 205 339-552 24-251 (613)
364 cd03270 ABC_UvrA_I The excisio 100.0 1.3E-30 2.9E-35 258.6 15.8 190 352-552 6-224 (226)
365 COG1134 TagH ABC-type polysacc 100.0 8.5E-30 1.8E-34 245.6 17.4 178 354-552 40-227 (249)
366 cd03278 ABC_SMC_barmotin Barmo 100.0 3.6E-30 7.7E-35 249.8 13.1 163 358-547 14-190 (197)
367 COG4107 PhnK ABC-type phosphon 100.0 5.2E-29 1.1E-33 226.1 16.8 203 341-552 7-232 (258)
368 COG4674 Uncharacterized ABC-ty 100.0 2.2E-29 4.7E-34 232.9 14.1 202 340-552 5-226 (249)
369 COG4586 ABC-type uncharacteriz 100.0 2.4E-29 5.3E-34 243.9 14.4 191 355-552 38-237 (325)
370 cd03271 ABC_UvrA_II The excisi 100.0 3.2E-29 6.8E-34 251.8 15.4 189 355-552 9-257 (261)
371 COG0488 Uup ATPase components 100.0 8.3E-29 1.8E-33 270.2 19.6 199 340-562 321-524 (530)
372 cd03279 ABC_sbcCD SbcCD and ot 100.0 3E-29 6.4E-34 246.8 13.6 192 340-550 5-211 (213)
373 cd03272 ABC_SMC3_euk Eukaryoti 100.0 3.6E-29 7.9E-34 251.3 14.1 189 341-546 4-234 (243)
374 COG4133 CcmA ABC-type transpor 100.0 4.2E-28 9.2E-33 223.8 11.9 186 341-538 3-195 (209)
375 COG4778 PhnL ABC-type phosphon 99.9 4.8E-27 1E-31 212.6 11.4 198 341-547 5-227 (235)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 9.8E-27 2.1E-31 234.7 12.6 179 367-546 25-242 (251)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.8E-27 8.2E-32 231.2 7.6 182 340-547 5-204 (212)
378 cd03240 ABC_Rad50 The catalyti 99.9 2.8E-26 6E-31 223.9 12.9 163 360-548 16-198 (204)
379 KOG0927|consensus 99.9 4.2E-26 9E-31 239.3 10.6 191 340-552 389-586 (614)
380 KOG0065|consensus 99.9 4.4E-26 9.6E-31 260.6 9.7 192 352-552 802-1012(1391)
381 KOG0059|consensus 99.9 1.5E-25 3.4E-30 261.3 14.4 204 339-552 563-778 (885)
382 COG4138 BtuD ABC-type cobalami 99.9 4.1E-26 8.9E-31 207.5 5.5 199 341-552 4-212 (248)
383 COG1129 MglA ABC-type sugar tr 99.9 2.5E-24 5.4E-29 229.7 19.7 203 341-552 264-481 (500)
384 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.1E-25 9E-30 222.3 11.3 200 340-547 3-233 (247)
385 PRK00349 uvrA excinuclease ABC 99.9 8.1E-24 1.7E-28 244.5 21.5 91 462-552 817-918 (943)
386 PRK00635 excinuclease ABC subu 99.9 9.2E-24 2E-28 253.4 20.6 200 340-552 600-897 (1809)
387 TIGR00630 uvra excinuclease AB 99.9 6E-23 1.3E-27 236.8 20.6 91 462-552 815-916 (924)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 7.1E-23 1.5E-27 198.9 14.3 169 358-549 13-192 (198)
389 COG3845 ABC-type uncharacteriz 99.9 2.5E-22 5.5E-27 210.2 19.3 205 340-552 257-483 (501)
390 PF00664 ABC_membrane: ABC tra 99.9 6.2E-20 1.3E-24 183.9 35.5 228 27-257 6-235 (275)
391 KOG0062|consensus 99.9 1.5E-22 3.2E-27 211.7 15.0 201 339-565 361-574 (582)
392 KOG0927|consensus 99.9 8.4E-22 1.8E-26 207.1 15.3 204 338-552 73-299 (614)
393 KOG0066|consensus 99.9 7.6E-22 1.6E-26 201.5 12.7 191 340-552 586-781 (807)
394 cd03239 ABC_SMC_head The struc 99.9 3.4E-21 7.3E-26 183.8 13.1 80 462-547 88-172 (178)
395 KOG0062|consensus 99.9 5.5E-22 1.2E-26 207.4 7.8 188 338-550 78-273 (582)
396 COG1245 Predicted ATPase, RNas 99.8 6.9E-21 1.5E-25 196.3 14.4 180 345-547 340-531 (591)
397 KOG2355|consensus 99.8 3.3E-20 7.1E-25 173.2 13.8 200 338-552 11-228 (291)
398 cd01128 rho_factor Transcripti 99.8 2.2E-21 4.8E-26 193.7 4.8 186 362-563 11-227 (249)
399 COG4170 SapD ABC-type antimicr 99.8 3.6E-20 7.9E-25 173.3 10.9 204 342-552 5-239 (330)
400 cd03241 ABC_RecN RecN ATPase i 99.8 6.5E-20 1.4E-24 187.5 13.7 77 474-550 170-250 (276)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.2E-20 6.9E-25 182.2 9.9 178 358-549 15-211 (213)
402 cd03280 ABC_MutS2 MutS2 homolo 99.8 1E-19 2.2E-24 177.2 11.0 148 357-552 17-170 (200)
403 KOG0065|consensus 99.8 2.4E-19 5.2E-24 205.9 10.3 193 355-552 129-342 (1391)
404 cd03227 ABC_Class2 ABC-type Cl 99.8 1.9E-18 4.1E-23 162.6 13.5 134 361-547 15-155 (162)
405 COG2401 ABC-type ATPase fused 99.8 2.1E-18 4.5E-23 176.1 13.2 177 355-552 397-589 (593)
406 COG1245 Predicted ATPase, RNas 99.7 9.9E-18 2.2E-22 173.2 12.1 190 345-547 79-288 (591)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.7 9.7E-18 2.1E-22 165.6 11.2 150 353-552 16-172 (222)
408 cd03242 ABC_RecF RecF is a rec 99.7 5.7E-17 1.2E-21 165.3 13.5 189 358-550 13-269 (270)
409 COG0178 UvrA Excinuclease ATPa 99.7 1.5E-16 3.3E-21 174.6 17.4 91 462-552 809-910 (935)
410 cd00820 PEPCK_HprK Phosphoenol 99.7 8.9E-18 1.9E-22 144.6 5.9 76 354-436 2-77 (107)
411 PRK00635 excinuclease ABC subu 99.7 1.4E-16 3.1E-21 192.1 15.4 90 463-552 1687-1787(1809)
412 KOG0066|consensus 99.7 6.8E-17 1.5E-21 165.5 9.1 220 340-581 264-520 (807)
413 cd03283 ABC_MutS-like MutS-lik 99.7 1E-16 2.2E-21 155.8 8.7 139 353-539 13-154 (199)
414 cd03243 ABC_MutS_homologs The 99.7 2.3E-16 5.1E-21 153.9 9.0 144 361-552 23-170 (202)
415 TIGR00606 rad50 rad50. This fa 99.6 4.6E-16 1E-20 189.6 12.3 117 425-545 1153-1288(1311)
416 PRK00349 uvrA excinuclease ABC 99.6 7.3E-16 1.6E-20 178.8 11.8 91 462-552 476-576 (943)
417 TIGR00630 uvra excinuclease AB 99.6 1.1E-15 2.3E-20 177.1 12.2 90 463-552 475-574 (924)
418 TIGR02858 spore_III_AA stage I 99.6 9.3E-15 2E-19 147.8 10.2 132 368-549 112-259 (270)
419 PRK00064 recF recombination pr 99.6 8.2E-14 1.8E-18 147.7 16.7 76 473-550 272-359 (361)
420 cd03282 ABC_MSH4_euk MutS4 hom 99.5 2.6E-14 5.7E-19 139.2 9.7 141 353-540 15-158 (204)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 5.4E-14 1.2E-18 139.0 11.7 72 474-545 136-211 (220)
422 PHA02562 46 endonuclease subun 99.5 1.5E-14 3.2E-19 162.9 7.5 88 462-550 450-555 (562)
423 cd03284 ABC_MutS1 MutS1 homolo 99.5 8E-14 1.7E-18 137.3 11.3 146 354-552 18-172 (216)
424 KOG0063|consensus 99.5 2.7E-13 5.8E-18 139.5 11.7 180 348-548 343-533 (592)
425 TIGR00634 recN DNA repair prot 99.4 7.1E-13 1.5E-17 148.6 9.2 77 473-549 439-519 (563)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.4 4.3E-12 9.3E-17 124.7 12.8 136 355-540 17-161 (213)
427 PRK10869 recombination and rep 99.4 1.8E-12 3.8E-17 144.4 10.0 77 473-549 429-509 (553)
428 PRK07721 fliI flagellum-specif 99.3 1.6E-11 3.5E-16 132.1 16.3 169 353-552 145-334 (438)
429 PTZ00132 GTP-binding nuclear p 99.3 8.1E-13 1.8E-17 130.1 5.6 44 478-521 156-204 (215)
430 PRK13695 putative NTPase; Prov 99.3 2E-12 4.2E-17 123.2 5.7 89 471-562 75-169 (174)
431 TIGR01069 mutS2 MutS2 family p 99.3 2.7E-11 5.9E-16 139.2 15.3 143 340-536 295-448 (771)
432 smart00534 MUTSac ATPase domai 99.3 6E-12 1.3E-16 121.1 8.0 78 469-549 56-138 (185)
433 PRK14079 recF recombination pr 99.2 1.9E-10 4.1E-15 121.4 14.4 74 473-551 262-344 (349)
434 cd03287 ABC_MSH3_euk MutS3 hom 99.2 1.1E-10 2.4E-15 115.1 11.0 137 354-539 18-160 (222)
435 PRK01156 chromosome segregatio 99.2 8E-11 1.7E-15 139.7 9.9 76 471-546 798-883 (895)
436 cd01124 KaiC KaiC is a circadi 99.1 5.7E-10 1.2E-14 107.1 12.6 85 462-546 59-163 (187)
437 PRK03918 chromosome segregatio 99.1 1.5E-10 3.2E-15 137.4 9.3 75 473-547 787-868 (880)
438 TIGR00767 rho transcription te 99.1 2.5E-10 5.4E-15 119.8 9.3 104 305-416 103-220 (415)
439 PRK08533 flagellar accessory p 99.1 1.9E-09 4.1E-14 107.3 14.6 156 341-546 8-184 (230)
440 PRK00409 recombination and DNA 99.1 3.2E-10 6.9E-15 130.9 10.1 142 356-544 317-462 (782)
441 KOG0063|consensus 99.1 3E-10 6.4E-15 117.4 8.6 162 365-547 98-288 (592)
442 TIGR02168 SMC_prok_B chromosom 99.1 1.6E-10 3.4E-15 141.1 8.0 75 471-545 1086-1164(1179)
443 TIGR00618 sbcc exonuclease Sbc 99.1 3.5E-10 7.7E-15 135.8 10.1 77 472-548 948-1036(1042)
444 PRK13830 conjugal transfer pro 99.0 1.2E-09 2.7E-14 127.3 13.1 64 489-552 649-724 (818)
445 TIGR03238 dnd_assoc_3 dnd syst 99.0 1.2E-10 2.5E-15 124.2 3.9 65 355-422 20-86 (504)
446 cd01131 PilT Pilus retraction 99.0 8.5E-10 1.8E-14 107.3 8.3 118 369-546 3-122 (198)
447 TIGR02169 SMC_prok_A chromosom 99.0 5.8E-10 1.3E-14 136.1 8.5 85 463-547 1057-1151(1164)
448 TIGR02788 VirB11 P-type DNA tr 99.0 1.1E-09 2.3E-14 113.9 7.7 134 360-552 137-272 (308)
449 COG0178 UvrA Excinuclease ATPa 98.9 3.5E-09 7.6E-14 117.5 10.7 116 456-574 463-588 (935)
450 PRK06793 fliI flagellum-specif 98.9 4.6E-09 9.9E-14 112.4 11.2 163 340-552 130-302 (432)
451 smart00382 AAA ATPases associa 98.9 4E-08 8.6E-13 88.1 15.8 116 366-532 1-125 (148)
452 cd01120 RecA-like_NTPases RecA 98.9 1.5E-08 3.3E-13 94.1 11.7 63 474-536 67-140 (165)
453 PRK02224 chromosome segregatio 98.9 4.2E-09 9.1E-14 125.0 8.8 76 473-548 780-869 (880)
454 cd03286 ABC_MSH6_euk MutS6 hom 98.9 1.2E-08 2.7E-13 100.3 10.2 138 353-539 16-159 (218)
455 PF13304 AAA_21: AAA domain; P 98.8 9.6E-09 2.1E-13 102.2 9.3 63 474-536 236-302 (303)
456 PRK00300 gmk guanylate kinase; 98.8 8.5E-09 1.8E-13 100.7 7.8 65 365-434 3-80 (205)
457 PRK06067 flagellar accessory p 98.8 6.2E-08 1.3E-12 96.7 14.0 147 363-547 21-187 (234)
458 PRK10246 exonuclease subunit S 98.8 9.4E-09 2E-13 123.1 9.0 76 472-547 947-1032(1047)
459 PRK06002 fliI flagellum-specif 98.7 3.1E-08 6.8E-13 106.2 7.4 85 338-423 137-229 (450)
460 PRK13891 conjugal transfer pro 98.6 4.7E-07 1E-11 106.3 14.7 67 485-551 680-751 (852)
461 TIGR01420 pilT_fam pilus retra 98.5 3.7E-07 7.9E-12 96.4 9.2 122 364-545 119-242 (343)
462 TIGR00611 recf recF protein. A 98.5 1.8E-07 3.8E-12 99.4 6.5 63 473-537 274-345 (365)
463 COG3910 Predicted ATPase [Gene 98.5 8.7E-07 1.9E-11 82.9 10.1 78 474-552 129-208 (233)
464 PRK06995 flhF flagellar biosyn 98.5 1.6E-07 3.6E-12 102.0 6.0 61 357-436 246-307 (484)
465 PRK01889 GTPase RsgA; Reviewed 98.5 1.6E-07 3.4E-12 99.5 5.7 79 356-437 184-263 (356)
466 PRK07196 fliI flagellum-specif 98.4 1.2E-07 2.7E-12 101.6 4.2 81 353-434 142-233 (434)
467 TIGR02655 circ_KaiC circadian 98.4 3.9E-08 8.5E-13 108.5 0.3 155 363-546 17-190 (484)
468 cd01130 VirB11-like_ATPase Typ 98.4 2.2E-07 4.8E-12 89.4 5.3 76 356-434 14-93 (186)
469 PRK11098 microcin B17 transpor 98.4 0.0021 4.6E-08 68.8 35.7 236 66-318 141-395 (409)
470 TIGR02524 dot_icm_DotB Dot/Icm 98.4 3.5E-07 7.6E-12 96.6 5.5 87 365-452 132-234 (358)
471 PF06472 ABC_membrane_2: ABC t 98.4 0.0011 2.4E-08 68.1 30.5 178 64-242 67-249 (281)
472 cd02023 UMPK Uridine monophosp 98.4 3.1E-07 6.7E-12 89.2 4.0 105 369-507 1-113 (198)
473 PF09818 ABC_ATPase: Predicted 98.3 3.8E-06 8.2E-11 88.8 11.9 169 346-552 227-418 (448)
474 PRK12369 putative transporter; 98.3 0.0058 1.3E-07 63.9 34.9 237 64-317 64-320 (326)
475 PRK15494 era GTPase Era; Provi 98.3 3.6E-07 7.9E-12 96.2 3.7 54 337-390 15-75 (339)
476 PRK10078 ribose 1,5-bisphospho 98.3 8E-07 1.7E-11 85.5 5.1 55 367-423 2-56 (186)
477 TIGR02680 conserved hypothetic 98.3 1.1E-06 2.4E-11 107.7 7.5 61 472-534 1245-1317(1353)
478 TIGR02322 phosphon_PhnN phosph 98.3 1.4E-06 3E-11 83.1 6.6 62 367-428 1-78 (179)
479 cd01125 repA Hexameric Replica 98.3 2.5E-06 5.5E-11 85.4 8.3 46 488-534 107-160 (239)
480 PRK08149 ATP synthase SpaL; Va 98.3 9.2E-07 2E-11 94.8 5.4 69 353-422 138-214 (428)
481 cd00009 AAA The AAA+ (ATPases 98.2 6.9E-06 1.5E-10 74.1 10.2 54 480-534 72-131 (151)
482 TIGR01026 fliI_yscN ATPase Fli 98.2 1.1E-05 2.3E-10 87.4 12.7 178 350-552 147-339 (440)
483 PLN03210 Resistant to P. syrin 98.2 2.9E-06 6.4E-11 103.3 9.2 43 360-402 200-244 (1153)
484 PLN02796 D-glycerate 3-kinase 98.2 4.1E-07 8.9E-12 94.4 1.2 64 351-414 76-151 (347)
485 PRK10733 hflB ATP-dependent me 98.2 3.8E-07 8.2E-12 103.9 0.8 26 363-390 183-208 (644)
486 COG0419 SbcC ATPase involved i 98.2 3.7E-06 8.1E-11 100.0 9.0 77 472-548 813-898 (908)
487 PRK13898 type IV secretion sys 98.2 4.1E-05 8.8E-10 89.9 17.3 60 488-547 638-709 (800)
488 PRK09862 putative ATP-dependen 98.1 7.9E-06 1.7E-10 89.7 9.9 63 343-406 187-250 (506)
489 TIGR03881 KaiC_arch_4 KaiC dom 98.1 3.7E-05 8E-10 76.4 13.3 39 363-401 16-56 (229)
490 TIGR00152 dephospho-CoA kinase 98.1 7.6E-06 1.6E-10 78.8 8.1 70 478-549 61-134 (188)
491 PRK09825 idnK D-gluconate kina 98.1 1.7E-06 3.7E-11 82.4 3.5 53 366-423 2-55 (176)
492 TIGR00235 udk uridine kinase. 98.1 1.3E-06 2.8E-11 85.6 2.3 43 365-427 4-46 (207)
493 TIGR00101 ureG urease accessor 98.1 7E-06 1.5E-10 79.9 7.3 105 369-479 3-108 (199)
494 PRK03846 adenylylsulfate kinas 98.1 2.3E-06 5E-11 83.2 3.7 55 365-423 22-78 (198)
495 PRK13873 conjugal transfer ATP 98.1 5.9E-05 1.3E-09 88.7 16.0 63 487-549 630-704 (811)
496 cd01123 Rad51_DMC1_radA Rad51_ 98.1 8.9E-06 1.9E-10 81.0 7.9 75 363-446 15-100 (235)
497 PRK05480 uridine/cytidine kina 98.0 1.3E-05 2.7E-10 78.6 7.1 44 365-428 4-47 (209)
498 TIGR03263 guanyl_kin guanylate 98.0 3.9E-06 8.5E-11 80.0 3.3 75 367-449 1-88 (180)
499 PRK09183 transposase/IS protei 98.0 2.6E-05 5.7E-10 79.0 9.4 49 342-391 73-126 (259)
500 PRK00454 engB GTP-binding prot 98.0 3.6E-06 7.7E-11 81.1 2.7 53 467-523 140-195 (196)
No 1
>KOG0058|consensus
Probab=100.00 E-value=3.9e-108 Score=884.65 Aligned_cols=529 Identities=23% Similarity=0.313 Sum_probs=459.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTIN-QHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.+.+..+++.|.+..+++|.... ... ..........+.++.++..++++++.+++.++++++..++|.++|+++++
T Consensus 157 ~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~ 233 (716)
T KOG0058|consen 157 LVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLR 233 (716)
T ss_pred HHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788889888899988776 221 12233456667777888889999999999999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
++.+|||.+.+||+++|++.|+..+.+.+...+...+.+.+..++++++|+++||.+++++++.+|+...+.++|.+..+
T Consensus 234 QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~r 313 (716)
T KOG0058|consen 234 QDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLR 313 (716)
T ss_pred hhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999988
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCL-LYLSTILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 267 (597)
++.+..+.+-++.++...|.+++++|||+|+.|+.+.++|.+..+...+...+.......+....++... ..+.++.++
T Consensus 314 klS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~G 393 (716)
T KOG0058|consen 314 KLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYG 393 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhc
Confidence 8888888888889999999999999999999999999999988776544332222111222222222222 122222222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.... .++.|.+..|+.|...+...+..+...+..+.++.++.+|++|++|.+|..+.. .. ..+. ...|.|+|+
T Consensus 394 g~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~--~~p~-~~~G~IeF~ 469 (716)
T KOG0058|consen 394 GHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GT--LAPD-HLQGVIEFE 469 (716)
T ss_pred cchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-Cc--cccc-cccceEEEE
Confidence 2222 457788999999999999999999999999999999999999999987754332 11 1111 357899999
Q ss_pred eeEEEeCCCC--ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 345 NTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 345 nVsf~Y~~~~--~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
||+|+||.+| +||+|+||+|+|||+||+||||||||||+++||.||| |++|+|++||+||+++++.+||++||+|.|
T Consensus 470 ~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q 549 (716)
T KOG0058|consen 470 DVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQ 549 (716)
T ss_pred EeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeec
Confidence 9999998765 5999999999999999999999999999999999999 578999999999999999999999999999
Q ss_pred CCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 422 DPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
||.||++||+|||.|| .++++|||++||+.|++||||.++ +||||.|||+|..|||||||||||||||+|||.|||||
T Consensus 550 EPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD 629 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD 629 (716)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999998 579999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE---------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV---------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive---------~~~g~y~~l~~~~ 565 (597)
|||||||+++|..||++|++.++++|||+|||||||+++||+|+|+|+|+++| +++|.|+++++.+
T Consensus 630 EATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 630 EATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred chhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 4558999998755
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.9e-96 Score=822.35 Aligned_cols=545 Identities=21% Similarity=0.276 Sum_probs=460.0
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 14 TVTATREEYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMR 93 (597)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (597)
....+...|.+..+..++..++.+..|.++..++|..+..... .+.....+.+++..++..++.++|.++..+++.+
T Consensus 148 ~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~---~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~r 224 (709)
T COG2274 148 LLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR---STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKR 224 (709)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666777778888888888888887765421 1122333444455666678899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 94 CSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL 173 (597)
Q Consensus 94 ~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~ 173 (597)
+..++-.++|+|++++|++||+++++||+++|+. |.++|++++.......+.+++++++.+++|++++|.+++++++.+
T Consensus 225 ld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~ 303 (709)
T COG2274 225 LDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAI 303 (709)
T ss_pred HhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 174 YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLI 253 (597)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (597)
+++.++...+.+..++..+..-...++.++.+.|++.|+++||+.+.|.++..+|++...+..+...+......+.....
T Consensus 304 ~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
T COG2274 304 PLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIK 383 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77766666666665555555555566778999999999999999999999999999988776665555444444444444
Q ss_pred HHHHHHH-HHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy1502 254 DFLCLLY-LSTILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYE 329 (597)
Q Consensus 254 ~~~~~~~-~~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~ 329 (597)
.++..+. +++++++.... .++.|.+.++.+....+..|+..+...|.+++....+.+|+.++++.|+|.+.+..
T Consensus 384 ~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-- 461 (709)
T COG2274 384 SLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-- 461 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc--
Confidence 4443322 22222333222 34567777777777788899999999999999999999999999998887543221
Q ss_pred CCCCCCCCcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC
Q psy1502 330 DENEIWPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV 407 (597)
Q Consensus 330 ~~~~~~~~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~ 407 (597)
....++..|+|+|+||+|+|+.+ +++|+|+||+|+|||+|||||+||||||||+|+|+|+| |++|+|++||+|+.++
T Consensus 462 -~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 462 -LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred -cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 12233457899999999999544 67999999999999999999999999999999999999 5789999999999999
Q ss_pred ChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 408 PLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++++|++||||+||++||+|||+|||++++ ++++|++++||+.|++||||+++ .||||.|||+|.+|||||||||+|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999975 68899999999999999999998 999999999999999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCch
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGF 557 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~ 557 (597)
||||++||+||||||||||||++||+.|+++|.+...++|+|+||||++++++||||+|||+|+|+| +.+|.
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~ 700 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGL 700 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 55888
Q ss_pred hHhhHhhh
Q psy1502 558 FFSKDLIE 565 (597)
Q Consensus 558 y~~l~~~~ 565 (597)
|..+|+++
T Consensus 701 y~~l~~~q 708 (709)
T COG2274 701 YARLYQQQ 708 (709)
T ss_pred HHHHHhcc
Confidence 88888654
No 3
>KOG0055|consensus
Probab=100.00 E-value=1.5e-96 Score=835.20 Aligned_cols=499 Identities=23% Similarity=0.332 Sum_probs=406.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc-cChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFST-NPSGRILNRFSKDMGAVDEVLPKAMLD 143 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~sG~l~~rit~D~~~i~~~~~~~~~~ 143 (597)
+.+.|+++.++..+..+++.+++.++++++..++|..+|+++++++.+|||+ .++|.+.+|+.+|...++..+...+..
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~ 788 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSL 788 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHH
Confidence 6677778888888899999999999999999999999999999999999994 334999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHH
Q psy1502 144 AAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKI 223 (597)
Q Consensus 144 ~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~ 223 (597)
+++++..+++.+++.|+++|.++++++..+|++.+......+..............+......|++.+||||++|+.|++
T Consensus 789 vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~ 868 (1228)
T KOG0055|consen 789 VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEK 868 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Confidence 99999999999999999999999988888777665554444444444444444445567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHH-HHHHHHHHHHHHHHHHHH
Q psy1502 224 LVEEFDYHQDLHSSTWH-LFVYTNMGFAYLIDFLCLLYLSTILISFFFF---ADIGGKVGL-AVTQTMTLMGVVQWAMRQ 298 (597)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~i~~-~~~~~~~~~~~~~~~~~~ 298 (597)
+.+.|.+..+...+... +.......++....++.......+.++..+. ......+.. +.+..+. ...+......
T Consensus 869 ~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~t-a~~~~~~~s~ 947 (1228)
T KOG0055|consen 869 FMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFT-AMALGQASSY 947 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 99999988766443322 2211111111111111111111111111111 111122111 1111111 1223445566
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCC--ccceeeeEEEcCCcEEEEEcCC
Q psy1502 299 AAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRT 376 (597)
Q Consensus 299 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~--~vL~~isl~I~~G~~vaIVG~S 376 (597)
..++.++..|+.+++++++.+|..+.+.. ......+..|+|+|+||+|+||.+| +||+|+||+|++||++||||||
T Consensus 948 ~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 948 APDISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCC
Confidence 67888999999999999998764332211 1111224579999999999998765 5999999999999999999999
Q ss_pred CCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcH
Q psy1502 377 GAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVEL 454 (597)
Q Consensus 377 GsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l 454 (597)
||||||++.||.|||+ ++|.|.|||+|++++++++||++||+|+|||.||++||||||.|| ++++++|+.+|||.|++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhh
Confidence 9999999999999995 789999999999999999999999999999999999999999998 56899999999999999
Q ss_pred HHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 455 KDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 455 ~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
|+||.++ +||||.|||+|.+||||||||||||||++|||+||||||||||||+++|+.||++|++.+.+||+|+|||||
T Consensus 1106 H~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred HHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 534 HTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 534 sti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
||++|||.|+|+++|+|+| +++|.|++|++.+.
T Consensus 1186 STIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1186 STIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred hhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 9999999999999999999 78899999987543
No 4
>KOG0054|consensus
Probab=100.00 E-value=1.6e-94 Score=836.73 Aligned_cols=504 Identities=46% Similarity=0.732 Sum_probs=470.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHH
Q psy1502 61 STESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKA 140 (597)
Q Consensus 61 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~ 140 (597)
+...++++|.++.++..++..++++.+...+.+.+..|++++++++++.|++|||.+++|.|+||+++|++.++..++..
T Consensus 856 ~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~ 935 (1381)
T KOG0054|consen 856 STSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFT 935 (1381)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHH
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhch
Q psy1502 141 MLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA 220 (597)
Q Consensus 141 ~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~ 220 (597)
+..++..++.++++++++.+..|+++++++++.++++++.++|.+.++++++++..+++++.+++.|+++|+.|||||+.
T Consensus 936 ~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~ 1015 (1381)
T KOG0054|consen 936 LEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGK 1015 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1502 221 AKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF--A-DIGGKVGLAVTQTMTLMGVVQWAMR 297 (597)
Q Consensus 221 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~g~i~~~~~~~~~~~~~~~~~~~ 297 (597)
+++|.+++....+.+.+.++.....++|++..+++++.+.+.+.++..+.. . ..+|.+|+.++|++++.+.+++.++
T Consensus 1016 ~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR 1095 (1381)
T KOG0054|consen 1016 EERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVR 1095 (1381)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999999999876665555544443 2 3468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEe-CCCCccceeeeEEEcCCcEEEEEcCC
Q psy1502 298 QAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRT 376 (597)
Q Consensus 298 ~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y-~~~~~vL~~isl~I~~G~~vaIVG~S 376 (597)
...++++.++|+||+.||.+.++|++...+...+++.||..|.|+|+|++.+| |+.++||+||||+|+|||||||||+|
T Consensus 1096 ~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRT 1175 (1381)
T KOG0054|consen 1096 QSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRT 1175 (1381)
T ss_pred HHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCC
Confidence 99999999999999999999887743332222367889999999999999999 66688999999999999999999999
Q ss_pred CCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHH
Q psy1502 377 GAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455 (597)
Q Consensus 377 GsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~ 455 (597)
|||||||++.|.|+.+ .+|+|.|||+||.++.+++||++++++||||.||+||+|.||+|.++++|+++|+|+++|++.
T Consensus 1176 GaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1176 GAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLK 1255 (1381)
T ss_pred CCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChH
Confidence 9999999999999975 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 456 DMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 456 ~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
++|+++ +|+|+.|.|+|.|+|-||||.+|+||||||+++||+|||||+++|++|+..||++|++.+++||||.||||++
T Consensus 1256 ~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1256 DVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLN 1335 (1381)
T ss_pred HHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccc
Confidence 999998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCEEEEEeCCeEEE---------ecCchhHhhHhh
Q psy1502 535 TIMDSDKVLVMDSGVAVV---------SSFGFFFSKDLI 564 (597)
Q Consensus 535 ti~~~D~Iivl~~G~Ive---------~~~g~y~~l~~~ 564 (597)
|+.+||||+|||+|+|+| ++++.|+++..+
T Consensus 1336 TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1336 TVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred hhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999 456677655543
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.7e-93 Score=801.90 Aligned_cols=546 Identities=17% Similarity=0.172 Sum_probs=429.9
Q ss_pred hhhHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 17 ATREEYRQFEIL----KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACM 92 (597)
Q Consensus 17 ~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (597)
++...||...++ ..+.+++.+..|.++..+++........ ......++..++++.++..++.+++.+.....+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 15 QQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556644433 3444556667777777888765422111 1111122233334444556677788888888999
Q ss_pred HHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 93 RCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLIL 172 (597)
Q Consensus 93 ~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~ 172 (597)
++..++|.++|++++++|+++|+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++.
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 173 LYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYL 252 (597)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (597)
+++.+++...+.+..++..+......+++.+.+.|.++|+++||+||.|+++.++|++..++..+...............
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK11174 173 APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAV 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666665555555555566778899999999999999999999999999888776655433322222222222
Q ss_pred HHHHHHHHHHHH-HHHHHHH--HhhhhHH----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy1502 253 IDFLCLLYLSTI-LISFFFF--ADIGGKV----GLA-----VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEP 320 (597)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~--~~~~g~i----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 320 (597)
..++..+...++ ++++... .++.|.+ +.+ +.+...+..|+..+...+..++.+.++++|+.++++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 332 (588)
T PRK11174 253 LEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPL 332 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 222222111111 1111111 1222321 111 123344567888888888899999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEc
Q psy1502 321 EGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400 (597)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~id 400 (597)
+...... .....+..++|+|+||+|.|++++++|+|+||+|+||+++|||||||||||||+++|+|+||++|+|++|
T Consensus 333 ~~~~~~~---~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~ 409 (588)
T PRK11174 333 AHPQQGE---KELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKIN 409 (588)
T ss_pred cccCCCc---cccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEEC
Confidence 3211110 0001112356999999998865678999999999999999999999999999999999999889999999
Q ss_pred ceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChh
Q psy1502 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVG 478 (597)
Q Consensus 401 g~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGG 478 (597)
|+|+++++.+++|++|+||||||+||+|||+|||+++ ++++|||+++||+.|++++||+.+ +||||.|||+|.+||||
T Consensus 410 g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGG 489 (588)
T PRK11174 410 GIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVG 489 (588)
T ss_pred CEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHH
Confidence 9999999999999999999999999999999999998 479999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE------
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV------ 552 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive------ 552 (597)
|||||||||||++||+||||||||||||++||+.|+++|.++.+++|+|+||||++++++||+|+||++|+|+|
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999998
Q ss_pred --ecCchhHhhHhhhcc
Q psy1502 553 --SSFGFFFSKDLIEGT 567 (597)
Q Consensus 553 --~~~g~y~~l~~~~~~ 567 (597)
+++|.|++++..+.+
T Consensus 570 L~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 570 LSQAGGLFATLLAHRQE 586 (588)
T ss_pred HHhcchHHHHHHHHhhc
Confidence 567888888875544
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.8e-92 Score=790.69 Aligned_cols=536 Identities=27% Similarity=0.366 Sum_probs=438.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 21 EYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHK 100 (597)
Q Consensus 21 ~~~~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~ 100 (597)
.+-...++..+.+++++..|.++..+++..... ......+...++++.++..++.++..+...+.+.++..++|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-----LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666778888888888888877611 111233344444555555666666677777788999999999
Q ss_pred HHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 101 KMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLS 180 (597)
Q Consensus 101 ~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~ 180 (597)
++|++++++|+++|+++++|++++|+++|++.++..+.+....+..+++.+++.+++++.++|.+++++++..+++.+..
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 169 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVL 169 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886666668899999999999999999988877766666655
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 181 KAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY 260 (597)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (597)
..+.++.++..+..+...+++.+.+.|.++|++++|+|+.++.+.++|++..+...+..................+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (567)
T COG1132 170 SLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLG 249 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554445555555556678899999999999999999999999999988776554432222222222222222222221
Q ss_pred HHHHH-HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q psy1502 261 LSTIL-ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWP 336 (597)
Q Consensus 261 ~~~~~-~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 336 (597)
..+++ ++.... .++.|.+.+++.+...+..++..+...+..++.+..+++|++++++.+++...... . ...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~--~~~ 324 (567)
T COG1132 250 TVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---P--LKD 324 (567)
T ss_pred HHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC---C--CCC
Confidence 11111 111111 24567788888888889999999999999999999999999999987554222111 0 123
Q ss_pred CcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcC
Q psy1502 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~ 415 (597)
..++|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|||+ ++|+|++||+|+++++.++||++
T Consensus 325 ~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 325 TIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred CCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 45779999999999877789999999999999999999999999999999999996 58999999999999999999999
Q ss_pred cEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|++|||||+||+|||+|||++++ +++|||+++||+.|+++|||+++ +||||.|||+|.+||||||||||||||++|||
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999985 59999999999999999999998 99999999999999999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||||||||+||++||+.|++++.++.++||+|+||||++|+++||+|+|||+|+|+| +++|.|+++|..+
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999999999889999999999999999999999999999999 6689999999865
Q ss_pred c
Q psy1502 566 G 566 (597)
Q Consensus 566 ~ 566 (597)
+
T Consensus 565 ~ 565 (567)
T COG1132 565 G 565 (567)
T ss_pred h
Confidence 4
No 7
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-90 Score=840.60 Aligned_cols=514 Identities=37% Similarity=0.545 Sum_probs=433.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLD 143 (597)
Q Consensus 64 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~ 143 (597)
.+++.|+++.++..++.+++.++....+.+...++|.++|++++++|++||+++++|++++|+++|++.++..+...+..
T Consensus 954 ~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 954 FYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHH
Q psy1502 144 AAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKI 223 (597)
Q Consensus 144 ~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~ 223 (597)
++..++.+++.++++++++|...++++++.++++++..++.+..++.++.+...++++.+++.|+++|+++||+|+.+++
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~ 1113 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 1113 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHH
Confidence 99999999999999999998766666666555555566677777777777788889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHH
Q psy1502 224 LVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFA-------DIGGKVGLAVTQTMTLMGVVQWAM 296 (597)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~i~~~~~~~~~~~~~~~~~~ 296 (597)
+.+.+.+..+...+..........|+...+.++..+.+.+.....+... ...+.++.+++++..+...+.++.
T Consensus 1114 f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~ 1193 (1622)
T PLN03130 1114 MAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVL 1193 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666554444433344555555555443322211111111110 013456667777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcC
Q psy1502 297 RQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGR 375 (597)
Q Consensus 297 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~ 375 (597)
..+..++..+++++|+.++++.++|.+.......++..||..|.|+|+||+|+|++ .++||+|+||+|+|||+||||||
T Consensus 1194 ~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGr 1273 (1622)
T PLN03130 1194 RLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGR 1273 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECC
Confidence 88889999999999999999887664321111122335667789999999999954 46799999999999999999999
Q ss_pred CCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcH
Q psy1502 376 TGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVEL 454 (597)
Q Consensus 376 SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l 454 (597)
||||||||+++|+|+|+ ++|+|+|||+|++++++++||++|++|||||+||+|||||||+++++++|+++++||+.|++
T Consensus 1274 SGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l 1353 (1622)
T PLN03130 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353 (1622)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCc
Confidence 99999999999999995 78999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 455 KDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 455 ~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
+|||+++ +||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..++||+|+||||+
T Consensus 1354 ~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL 1433 (1622)
T PLN03130 1354 KDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1433 (1622)
T ss_pred HHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCCh
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCEEEEEeCCeEEE--------e-cCchhHhhHhhhcccchHHHHHHH
Q psy1502 534 HTIMDSDKVLVMDSGVAVV--------S-SFGFFFSKDLIEGTVSAKVLSSRK 577 (597)
Q Consensus 534 sti~~~D~Iivl~~G~Ive--------~-~~g~y~~l~~~~~~~~~~~~~~~~ 577 (597)
+|+++||||+|||+|+|+| + ++|.|++|++..+..+.+...+.+
T Consensus 1434 ~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a 1486 (1622)
T PLN03130 1434 NTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLV 1486 (1622)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHH
Confidence 9999999999999999999 3 369999999988776544433333
No 8
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-90 Score=843.83 Aligned_cols=502 Identities=39% Similarity=0.610 Sum_probs=439.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDA 144 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~ 144 (597)
++.+|+++.++..++.+++.++..+.+.+...++|.++|++++++|++||+++++|++++|+++|++.++..+...+..+
T Consensus 1007 ~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~ 1086 (1522)
T TIGR00957 1007 RLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMF 1086 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777778888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH
Q psy1502 145 AQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224 (597)
Q Consensus 145 i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~ 224 (597)
+..++.+++.++++++.+|++++++++++++++++.+++.+..++.++.+...++++.+++.|+++|+++||+||.++++
T Consensus 1087 ~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f 1166 (1522)
T TIGR00957 1087 MGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERF 1166 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHH
Confidence 99999999999999999999888877777777777888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 VEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF--ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEV 302 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 302 (597)
.+++.+..+...+..+.......|+...+.++..+.+.++....+.. .++.|.+++++.++..+..++..+...+..+
T Consensus 1167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~ 1246 (1522)
T TIGR00957 1167 IHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEM 1246 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888776666555455566666666655433222222111111 2467888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHH
Q psy1502 303 ENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKS 381 (597)
Q Consensus 303 ~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKS 381 (597)
+.+++|++|+.++++.+++.+.......++..||..|.|+|+||+|+|+++ ++||+||||+|+|||+||||||||||||
T Consensus 1247 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKS 1326 (1522)
T TIGR00957 1247 ETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKS 1326 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHH
Confidence 999999999999998776543111111233456777899999999999644 5799999999999999999999999999
Q ss_pred HHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHh
Q psy1502 382 SLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460 (597)
Q Consensus 382 TL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~ 460 (597)
||+++|+|+|+ ++|+|+|||+|++++++++||++|++|||||+||+|||||||++.++++|||+++|++.|++++||++
T Consensus 1327 TL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~ 1406 (1522)
T TIGR00957 1327 SLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSA 1406 (1522)
T ss_pred HHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhh
Confidence 99999999995 68999999999999999999999999999999999999999998778999999999999999999999
Q ss_pred c-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhc
Q psy1502 461 G-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 461 l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~ 539 (597)
+ +||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..+++|+|+||||++++.+|
T Consensus 1407 lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~ 1486 (1522)
T TIGR00957 1407 LPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDY 1486 (1522)
T ss_pred CccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 540 DKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 540 D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
|||+|||+|+|+| +++|.|++|+++.+
T Consensus 1487 DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~g 1521 (1522)
T TIGR00957 1487 TRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDAG 1521 (1522)
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999 55788998887643
No 9
>KOG0055|consensus
Probab=100.00 E-value=1e-91 Score=795.75 Aligned_cols=498 Identities=23% Similarity=0.326 Sum_probs=409.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
..+.+.++.+.++.++.+++...++.+.++|...++|.+.++.+++++.+|||.+.+|++.+++++|++.+++.+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 34566667777777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..+.++++.+++.|+..|+++++++...|+..+....+.+...+....+....++..+.+.|++.++|||.+|+.|+
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999999888887766655555555455555555555677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF-------ADIGGKVGLAVTQTMTLMGVVQWA 295 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~i~~~~~~~~~~~~~~~~~ 295 (597)
.+.++|.+..+...+...+. ..+.+....+...+......+++++. ...+|.+...+..++.-...+.+.
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~---g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKK---GLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 99999999877654432211 11111111111111111111111111 112333222121122212233444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCC--ccceeeeEEEcCCcEEEEE
Q psy1502 296 MRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIV 373 (597)
Q Consensus 296 ~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~--~vL~~isl~I~~G~~vaIV 373 (597)
...+..+..+.+++.+|++.++..|..+.... .........|+|+|+||+|+||++| ++|+|+||+||+|++||||
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~--~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSK--GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccc--cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 55667778899999999999886554322111 1112223568999999999999876 6999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHH
Q psy1502 374 GRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQE 451 (597)
Q Consensus 374 G~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~ 451 (597)
|||||||||+++||.||| |++|+|+|||.|+++++.++||++||+|+|+|.||++||+|||.+|+ +++++++.+|||.
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ 465 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHH
Confidence 999999999999999999 57899999999999999999999999999999999999999999985 8999999999999
Q ss_pred hcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEec
Q psy1502 452 VELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIA 530 (597)
Q Consensus 452 a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~Ia 530 (597)
|++++||..+ +||||++||+|..|||||||||||||||+|||+||||||||||||+++|+.||++|++.+++||+|+||
T Consensus 466 ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVa 545 (1228)
T KOG0055|consen 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVA 545 (1228)
T ss_pred ccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 531 HRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 531 Hrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||||++||+|+||++|+||| +.+|.|.+|++.+
T Consensus 546 HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 546 HRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQ 588 (1228)
T ss_pred eehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHH
Confidence 9999999999999999999999 5569999999744
No 10
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-89 Score=831.94 Aligned_cols=510 Identities=37% Similarity=0.571 Sum_probs=427.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
..++..|+++.++..++.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.++..+...+.
T Consensus 950 ~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~ 1029 (1495)
T PLN03232 950 GFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMN 1029 (1495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHH
Confidence 44677788888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..++.+++.++++++++|...++++++.++++++..++.+..++.++.+...++++.+++.|+++|+++||+||.++
T Consensus 1030 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1030 MFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 99999888888888888888766655555555445555566666677777778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD-------IGGKVGLAVTQTMTLMGVVQWA 295 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~i~~~~~~~~~~~~~~~~~ 295 (597)
++.+++.+..+...+..........|+......+..+.+.+.....+.... ..+.++.++.++..+..++.++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l 1189 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGV 1189 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 988888777665544433333334444444433322111111111111000 0233445566777778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEc
Q psy1502 296 MRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVG 374 (597)
Q Consensus 296 ~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG 374 (597)
...+..++.++++++|+.++++.++|.+.......++..||..|.|+|+||+|+|+ +.++||+|+||+|+|||+|||||
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG 1269 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVG 1269 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEEC
Confidence 99999999999999999999988766432111111233466678999999999995 44689999999999999999999
Q ss_pred CCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhc
Q psy1502 375 RTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE 453 (597)
Q Consensus 375 ~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~ 453 (597)
|||||||||+++|+|+|+ ++|+|+|||+|++++++++||++|+||||||+||+|||||||+++++++|+|+++|++.|+
T Consensus 1270 ~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~ 1349 (1495)
T PLN03232 1270 RTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAH 1349 (1495)
T ss_pred CCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 999999999999999995 7899999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q psy1502 454 LKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532 (597)
Q Consensus 454 l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 532 (597)
++|||+++ +||||.|||+|.+|||||||||||||||+|+|+||||||||||||++||+.|+++|++..+++|+|+||||
T Consensus 1350 l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHR 1429 (1495)
T PLN03232 1350 IKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHR 1429 (1495)
T ss_pred CHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhcCEEEEEeCCeEEE--------ec-CchhHhhHhhhcccchHH
Q psy1502 533 LHTIMDSDKVLVMDSGVAVV--------SS-FGFFFSKDLIEGTVSAKV 572 (597)
Q Consensus 533 lsti~~~D~Iivl~~G~Ive--------~~-~g~y~~l~~~~~~~~~~~ 572 (597)
++|+++||+|+|||+|+|+| ++ +|.|++|++.++..+.+.
T Consensus 1430 l~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~~ 1478 (1495)
T PLN03232 1430 LNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQY 1478 (1495)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhhhHH
Confidence 99999999999999999999 34 469999999887765544
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.7e-88 Score=774.01 Aligned_cols=525 Identities=18% Similarity=0.217 Sum_probs=427.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+..++.+..|.++..++|..+.... ........+.++++.++..++.+++.+.....+.++..++|.++|+++++
T Consensus 145 ~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 221 (686)
T TIGR03797 145 GLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLR 221 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455677777777888887664321 11112223334444555567788888889999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|++||+++++|++++|++ |++.+++++...+...+.+++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 222 ~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 300 (686)
T TIGR03797 222 LPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQV 300 (686)
T ss_pred CCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 799999999988888888888888899999999999998777766665555555555544
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 267 (597)
+..+......++..+.+.|.++|+++||++|.|+++.++|++..++..+...+......+...+...+..+... +++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 380 (686)
T TIGR03797 301 RKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAA 380 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445566788999999999999999999999999999887765554443333333333333332222111 11222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.++..++..+..++..+...+..++.+..+++|+.++++.+++.+... ....+..+.|+|+
T Consensus 381 ~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-----~~~~~~~~~I~~~ 455 (686)
T TIGR03797 381 ISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-----TDPGKLSGAIEVD 455 (686)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-----CCCCCCCceEEEE
Confidence 2211 3456677777777778889999999999999999999999999988665432111 0111234679999
Q ss_pred eeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|+ +++++|+|+||+|+|||++||||+||||||||+++|+|+|+ ++|+|++||+|+++++++++|++|||||||
T Consensus 456 nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 456 RVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred EEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 9999995 45789999999999999999999999999999999999995 689999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 423 PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
|+||+|||+|||+++++++++++++|++.++++++++.+ +||||.+||+|.+|||||||||+|||||+++|||||||||
T Consensus 536 ~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 536 GRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred CccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999998669999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
||+||++||+.|+++|+++ ++|+|+||||++++++||+|+||++|+|+| +++|.|++++..
T Consensus 616 TS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 616 TSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred ccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 9999999999999999987 689999999999999999999999999998 456777777753
No 12
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.9e-88 Score=778.99 Aligned_cols=526 Identities=21% Similarity=0.259 Sum_probs=427.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.++..++.+..|.++..++|..+..... .....+...+++++++..++.+++.++..+.+.++..++|.++|+++++
T Consensus 165 ~~~~~~~~l~~p~~~~~iiD~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 241 (708)
T TIGR01193 165 AIIVTLISIAGSYYLQKIIDTYIPHKMM---GTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFE 241 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444566677787788888876643211 0111122233334445567788888888999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|+.||+++++|++++|++ |++.+.+++...+...+..++.++++++++++++|++++++++.+++.+++...+.+..+
T Consensus 242 l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 320 (708)
T TIGR01193 242 LPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFN 320 (708)
T ss_pred CCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 899999999888888888888888888999999999998887777766666666666666
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 267 (597)
+..+......++..+.+.|+++|+++||++|.|+++.++|++...+..+...+..........+..++..+. +.+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555566677889999999999999999999999999988776654443332222222222222222111 1122222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.++..++..+..|+..+...+..++.+..+++|+.++++.+++.+.... .....+..++|+|+
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~---~~~~~~~~~~I~~~ 477 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK---RTELNNLNGDIVIN 477 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc---ccCCCCCCCcEEEE
Confidence 2222 34567777777888888899999999999999999999999999987665322111 01112235689999
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|+| |++|+|++||+|+++++.++||++|+||||||
T Consensus 478 ~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 557 (708)
T TIGR01193 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557 (708)
T ss_pred EEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence 99999976678999999999999999999999999999999999999 47899999999999999999999999999999
Q ss_pred CCCCccHHhhcccC--CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 424 VLFSGTLRKNLDPF--EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 424 ~LF~gTI~eNI~~~--~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
+||+|||+|||+++ ++++++++++|++.++++|||+.+ +||||.|||+|.+|||||||||+||||++++|+||||||
T Consensus 558 ~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE 637 (708)
T TIGR01193 558 YIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637 (708)
T ss_pred eehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999999999997 468999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhH
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKD 562 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~ 562 (597)
|||+||++||+.|+++|.+. +++|+|+||||+++++.||+|++|++|+++| +++|.|++++
T Consensus 638 ~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~ 706 (708)
T TIGR01193 638 STSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706 (708)
T ss_pred ccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHh
Confidence 99999999999999999985 7899999999999999999999999999998 3455666655
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.4e-88 Score=774.78 Aligned_cols=516 Identities=24% Similarity=0.305 Sum_probs=423.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 107 (597)
+..+.+++++..|.++..++|......... .....++.++++.++..++.+++.+...+++.++..++|.++|++++
T Consensus 169 ~~~~~~l~~~~~p~~~~~iid~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll 245 (711)
T TIGR00958 169 FLTLSSLGEMFIPFYTGRVIDTLGGDKGPP---ALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLL 245 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788888888888888766432110 11222344444555566777888888889999999999999999999
Q ss_pred cCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 108 ~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
++|++||++.++|++++|+++|++.+++.+...+..++.+++.++++++++++++|.+++++++.+++.+++...+.+..
T Consensus 246 ~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~ 325 (711)
T TIGR00958 246 RQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325 (711)
T ss_pred cCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888777777667777777666
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL-STILI 266 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 266 (597)
++..+......++..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+.............++..+.. .++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 405 (711)
T TIGR00958 326 QLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYY 405 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555566778899999999999999999999999999988776554433221111111111112111111 11111
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.... .++.|.+.+++.+...+..++..+...+.+++++.++.+|+.++++.+++.+.... ..+.+..+.|+|
T Consensus 406 g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~----~~~~~~~~~I~~ 481 (711)
T TIGR00958 406 GGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT----LAPLNLEGLIEF 481 (711)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC----CCCCCCCCeEEE
Confidence 22111 34567777888888888999999999999999999999999999987654321111 111123567999
Q ss_pred EeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 344 QNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 344 ~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+||+|+||+ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+|||
T Consensus 482 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 561 (711)
T TIGR00958 482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561 (711)
T ss_pred EEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEe
Confidence 999999975 3579999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|||++|+|||||||+++ ++++||++++|++.+++++|++++ +||||.+||+|.+||||||||||||||+++||+||||
T Consensus 562 Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILIL 641 (711)
T TIGR00958 562 QEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641 (711)
T ss_pred cCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999997 468899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||||+++|+.|++ ....+++|+|+||||++++++||+|+|||+|+|+|
T Consensus 642 DEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 642 DEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred EccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999998 33457899999999999999999999999999998
No 14
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.7e-87 Score=754.21 Aligned_cols=532 Identities=21% Similarity=0.306 Sum_probs=424.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
++..+.+++.+..|.++..+++.....+.. .......+++.++++.++..++.+++.+....++.++..++|.++|+++
T Consensus 30 ~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 108 (592)
T PRK10790 30 LMLWVAAAAEVSGPLLISYFIDNMVAKGNL-PLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAA 108 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667778888888888876543211 1000011112233333344556677777888889999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|+++|++.++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++.+++.+++...+.+.
T Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~ 188 (592)
T PRK10790 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188 (592)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877666555544444444444
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMG-FAYLIDFLCLLYLSTI- 264 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 264 (597)
.+...+......++..+.+.|.++|+++||+||.++++.++|.+..+...+........... ......++..+...++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (592)
T PRK10790 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445566788999999999999999999999999988766544432222111111 1111222221111111
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 265 LISFFFF--ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 265 ~~~~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++++... .++.|.+.+++.+...+..|+..+...+..++.+..+++|+.++++.++++... . ...+..++|+
T Consensus 269 ~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~-----~~~~~~~~i~ 342 (592)
T PRK10790 269 MLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D-----DRPLQSGRID 342 (592)
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C-----ccCCCCCeEE
Confidence 1111111 234566666777777888999999999999999999999999998765432111 1 1112245799
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+||+|+|++++++|+|+||+|++||++||||+||||||||+++|+|+|+ ++|+|.+||+|+++++++++|++|+||||
T Consensus 343 ~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q 422 (592)
T PRK10790 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422 (592)
T ss_pred EEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEcc
Confidence 99999999866779999999999999999999999999999999999995 68999999999999999999999999999
Q ss_pred CCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 422 DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
||+||+|||+|||+++++++|+++++|++.++++++++.+ +||||.+||+|.+|||||||||+|||||+++||||||||
T Consensus 423 ~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE 502 (592)
T PRK10790 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502 (592)
T ss_pred CCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999999999998889999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
|||+||++||+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|++ ++++.|+++++.+
T Consensus 503 pts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 503 ATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999988999999999999999999999999999998 5678888888644
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.7e-88 Score=813.30 Aligned_cols=527 Identities=20% Similarity=0.258 Sum_probs=405.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q psy1502 34 FVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAF 113 (597)
Q Consensus 34 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 113 (597)
.+..+.|.++..+++......... .....+.+++++++++..++.+++.++..+++.++..++|.++|++++++|++|
T Consensus 839 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~ 916 (1466)
T PTZ00265 839 GLYPVFALLYAKYVSTLFDFANLE--ANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISF 916 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344455555667666544321000 011233455556666677788889999999999999999999999999999999
Q ss_pred hcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy1502 114 FST--NPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS-- 189 (597)
Q Consensus 114 f~~--~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~-- 189 (597)
|++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|.+++++++++++... .+.+..+.
T Consensus 917 fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~ 993 (1466)
T PTZ00265 917 FDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMR---VFAIRARLTA 993 (1466)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 986 88999999999999999999999999999999999999999999999988776654433222 22221111
Q ss_pred ---HHHH-------------HHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 190 ---LKYL-------------EGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLI 253 (597)
Q Consensus 190 ---~~~~-------------~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (597)
..+. .....+.....++|+++|+++||+|+.|+++.++|++..+...+...........+..+.
T Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1466)
T PTZ00265 994 NKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFS 1073 (1466)
T ss_pred HHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1101 111233457889999999999999999999999999887765443332222112122222
Q ss_pred HHHHHHHH-HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy1502 254 DFLCLLYL-STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYE 329 (597)
Q Consensus 254 ~~~~~~~~-~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~ 329 (597)
..+..+.. .+++++.... .++.|.+..++.++.....++..+...+..++++.++++|++++++.+++.+......
T Consensus 1074 ~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~ 1153 (1466)
T PTZ00265 1074 QSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGG 1153 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcc
Confidence 22221111 1112222221 2334544444433333334556677788899999999999999998755322111100
Q ss_pred CCC-CCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC-------------
Q psy1502 330 DEN-EIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------------- 393 (597)
Q Consensus 330 ~~~-~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------------- 393 (597)
... ...+..+.|+|+||+|+||++ .+||+|+||+|++|+++|||||||||||||++||+|||++
T Consensus 1154 ~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1154 IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred cccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 000 011234689999999999753 4799999999999999999999999999999999999964
Q ss_pred ------------------------------------------CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 394 ------------------------------------------EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 394 ------------------------------------------~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+|+|++||+|+++++.++||++||||||||+||+||||
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIr 1313 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIY 1313 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHH
Confidence 89999999999999999999999999999999999999
Q ss_pred hhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 432 KNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 432 eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
|||+++ +++++|++++||+.|+++|||..+ +||||.|||+|.+|||||||||||||||+|||+||||||||||||++|
T Consensus 1314 eNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 999998 579999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeC----CeEE-E--------e-cCchhHhhHhhh
Q psy1502 510 DLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDS----GVAV-V--------S-SFGFFFSKDLIE 565 (597)
Q Consensus 510 e~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~----G~Iv-e--------~-~~g~y~~l~~~~ 565 (597)
|+.|+++|.+.. +++|+|+||||++++++||+|+||++ |+++ | + ++|.|++++..+
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999999999984 68999999999999999999999999 9965 5 4 478898888643
No 16
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.9e-87 Score=771.32 Aligned_cols=527 Identities=21% Similarity=0.263 Sum_probs=426.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS 109 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 109 (597)
++..++.+..|.++..++|..+..+.. .....+.+.++++.++..++.+++.++....+.++..++|.++|++++++
T Consensus 164 ~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 240 (710)
T TIGR03796 164 LLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRL 240 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444556677787788888876643311 01112233344444555677888888999999999999999999999999
Q ss_pred CchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 110 PLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS 189 (597)
Q Consensus 110 ~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 189 (597)
|+++|+++++|++++|+++| +.+++++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..++
T Consensus 241 ~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 319 (710)
T TIGR03796 241 PVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVD 319 (710)
T ss_pred CHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 68999999999999999999999999999999999988877777666666666665555
Q ss_pred HHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1502 190 LKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILISF 268 (597)
Q Consensus 190 ~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 268 (597)
..+......++..+.+.|.++|+++||++|.|+.+.++|++...+..+...+......+...+...+..+... +++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444555566788999999999999999999999999998877665544333322222222222222222111 112222
Q ss_pred HHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC--CCCCCC-CCCcccEE
Q psy1502 269 FFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNY--EDENEI-WPVLGKIE 342 (597)
Q Consensus 269 ~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~I~ 342 (597)
+.. .++.|.+.++..++..+..++..+...+..++.+..+++|+.++++.+++....... ...... .+..+.|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 221 345677777777888888999999999999999999999999999876553221100 000011 22356899
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+|+|++ .+++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+|||
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 559 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEe
Confidence 9999999974 4689999999999999999999999999999999999994 7899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|||+||+|||||||++++ +++++++++|++.+++++|+.++ +||||.+||+|.+|||||||||+|||||+++|+||||
T Consensus 560 Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliL 639 (710)
T TIGR03796 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639 (710)
T ss_pred cCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999874 68999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhH
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKD 562 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~ 562 (597)
||||||||++||+.|.+.|.+ .++|+|+||||++++++||+|+|||+|+|+| +++|.|++++
T Consensus 640 DEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 640 DEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred ECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 999999999999999999987 4899999999999999999999999999998 3556666665
No 17
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-87 Score=813.96 Aligned_cols=506 Identities=34% Similarity=0.567 Sum_probs=428.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
..++.+|+++.++..+..+++.+..+....+...++|.++|++++++|+.||+++++|++++|+++|++.++..+...+.
T Consensus 998 ~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 998 ATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566666666666666666666667777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..++.+++.++++++.+|.++++++++.++++.+..++.+..++.++......+++.+++.|+++|+++||+||.++
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 99999999999999999999977776666666666677778888888888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF------ADIGGKVGLAVTQTMTLMGVVQWAM 296 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~i~~~~~~~~~~~~~~~~~~ 296 (597)
++.++|.+..+...+..........|......++..+...+++++++.. ....|.++++++++..+..++.++.
T Consensus 1158 ~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~ 1237 (1560)
T PTZ00243 1158 LVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888776665554444566666665555433222222111111 1245667777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCC------------------------CCCCCC---CCCCCcccEEEEeeEEE
Q psy1502 297 RQAAEVENHMISVKRLVEYTKLEPEGNLSP------------------------NYEDEN---EIWPVLGKIEFQNTNVR 349 (597)
Q Consensus 297 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~------------------------~~~~~~---~~~~~~~~I~f~nVsf~ 349 (597)
..+..++.++.+++|+.++++..++++.+. ....++ +.++..|.|+|+||+|+
T Consensus 1238 ~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~ 1317 (1560)
T PTZ00243 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEE
Confidence 999999999999999999986432211000 000011 11234578999999999
Q ss_pred eCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 350 YLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 350 Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
|+++ ++||+||||+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|++++++++||++|+||||||+||+
T Consensus 1318 Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred eCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 9654 569999999999999999999999999999999999995 68999999999999999999999999999999999
Q ss_pred ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC-CCEEEeecCCCCC
Q psy1502 428 GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN-NVILVLDEATANV 505 (597)
Q Consensus 428 gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~-p~ILILDEaTSaL 505 (597)
|||||||+++++++|+|+++||+.|++++||.++ +||||.|||+|.||||||||||||||||+++ |+|||||||||+|
T Consensus 1398 gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1398 GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC
Confidence 9999999998889999999999999999999998 9999999999999999999999999999995 8999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------e-cCchhHhhHhhhccc
Q psy1502 506 DPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------S-SFGFFFSKDLIEGTV 568 (597)
Q Consensus 506 D~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~-~~g~y~~l~~~~~~~ 568 (597)
|++||+.|+++|++.++++|+|+||||++|+++||+|+|||+|+|+| + ++|.|++|++..+..
T Consensus 1478 D~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1478 DPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999999999 3 478999999877653
No 18
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-87 Score=814.11 Aligned_cols=506 Identities=32% Similarity=0.578 Sum_probs=438.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 67 GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQ 146 (597)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~ 146 (597)
++|+++.++..++.+++.++..+.+.+...++|.++++++++.|++||+++++|++++|+++|++.++..+...+..++.
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~ 1008 (1490)
T TIGR01271 929 YIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQ 1008 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455677788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHH
Q psy1502 147 GVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVE 226 (597)
Q Consensus 147 ~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~ 226 (597)
.++.+++.++++++++|++++++++++++++++..++.+..++.++.+...++++.+++.|+++|+.+||+||.++++.+
T Consensus 1009 ~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~ 1088 (1490)
T TIGR01271 1009 LTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFET 1088 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHH
Confidence 99999999999999999988877777666777777788777888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 227 EFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF-ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENH 305 (597)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (597)
+|.+..+...+.+........|+.....++......+++++.+.. ....|.++.+++++..+..++.++...+..+...
T Consensus 1089 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1089 LFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988766555554555556666666554432222222221111 2345667788888888888899999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCC--------------CCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEE
Q psy1502 306 MISVKRLVEYTKLEPEGNLSPNY--------------EDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKI 370 (597)
Q Consensus 306 ~~s~~ri~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~v 370 (597)
+.+++|+.++++.+++....... ..++..||..|.|+|+||+|+|+. .+++|+|+||+|+|||+|
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Gekv 1248 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRV 1248 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEE
Confidence 99999999999876653211100 012234677789999999999964 578999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHH
Q psy1502 371 GIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQ 450 (597)
Q Consensus 371 aIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~ 450 (597)
||||+||||||||+++|+|+|+++|+|+|||+|+++++++++|++|+||||||+||+|||||||+++.+++|+++++|++
T Consensus 1249 aIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~ 1328 (1490)
T TIGR01271 1249 GLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAE 1328 (1490)
T ss_pred EEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHH
Confidence 99999999999999999999998999999999999999999999999999999999999999999988899999999999
Q ss_pred HhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q psy1502 451 EVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTI 529 (597)
Q Consensus 451 ~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~I 529 (597)
.++++++|.++ +||||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+|
T Consensus 1329 ~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I 1408 (1490)
T TIGR01271 1329 EVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408 (1490)
T ss_pred HCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcccchHH
Q psy1502 530 AHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGTVSAKV 572 (597)
Q Consensus 530 aHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~~~~~~ 572 (597)
|||++++.+||+|+||++|+|+| +++|.|++|+++.++.....
T Consensus 1409 aHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~~~~~ 1459 (1490)
T TIGR01271 1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFP 1459 (1490)
T ss_pred ecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChhcccc
Confidence 99999999999999999999999 56899999998776655543
No 19
>KOG0056|consensus
Probab=100.00 E-value=2.6e-90 Score=706.99 Aligned_cols=522 Identities=21% Similarity=0.277 Sum_probs=410.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGL------FVAGISRSTAFYSACMRCSKGIHKKM 102 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~------~~~~~~~~~~~~~~~~~~~~~lr~~l 102 (597)
....-++.+..|.+...+++.+..+..+ ....++.+.++.++. .+++-+|++++..+.+-..+++-.++
T Consensus 224 l~i~rli~~~~pi~~k~iv~~ltap~~~-----~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 224 LIIGRLINVSLPILSKWIVDELTAPDTF-----QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHHHhhhhHHhHHHHHHhhcCcchh-----hHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHH
Confidence 3334455666666666777665532211 122234444443322 34556666666667888889999999
Q ss_pred HHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy1502 103 FEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSL-SVNPLFSIPVLILLYLFWRLSK 181 (597)
Q Consensus 103 ~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~-~~~~~l~l~~~~~~~~~~~~~~ 181 (597)
|+|+..+++.||-++.+|+++.-++...+.+. +......++...++.+...++..+ .+|||+++++.+...++.....
T Consensus 299 frHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheee
Confidence 99999999999999999999999988887776 666677777777776666665444 4899998877766655443322
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL 261 (597)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (597)
.......+.++.-..+..+-.+.-.+++-+.+|||-||+|+++.++|.++...+....++....... ++......+
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnf----LN~~Qn~Ii 453 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNF----LNIVQNGII 453 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhh
Confidence 1111111111111111222334667899999999999999999999999888776654443322222 222221111
Q ss_pred HHHHHHH-HH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q psy1502 262 STILISF-FF-------FADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENE 333 (597)
Q Consensus 262 ~~~~~~~-~~-------~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 333 (597)
++-++++ ++ .....|+.+.+.+|.+++..|+++....+..+|++...+++++++++.++|....+. .++
T Consensus 454 ~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~---a~p 530 (790)
T KOG0056|consen 454 GLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG---APP 530 (790)
T ss_pred hhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC---CCC
Confidence 1111111 11 034678888999999999999999999999999999999999999987665432222 122
Q ss_pred CCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHH
Q psy1502 334 IWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 334 ~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~l 412 (597)
.....|.|+|+||+|+|+.++|+|+||||+++||+++|+|||||+||||++++|.|||+ .+|+|.|||+||+.+..+++
T Consensus 531 l~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred ccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 22357899999999999888999999999999999999999999999999999999997 78999999999999999999
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|++||+||||..|||+||.+||.+++ .+++||+.+|++.|++||-|.+. +||+|+|||+|-+||||+|||+||||+++
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999999999975 79999999999999999999997 99999999999999999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE---------ecCchhHhh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV---------SSFGFFFSK 561 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive---------~~~g~y~~l 561 (597)
|+|.|++|||||||||..||+.||.+|.+++++||.|+|||||||+.+||.|+|+++|+|+| ...|.|++|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 448999999
Q ss_pred Hh
Q psy1502 562 DL 563 (597)
Q Consensus 562 ~~ 563 (597)
|+
T Consensus 771 Wq 772 (790)
T KOG0056|consen 771 WQ 772 (790)
T ss_pred HH
Confidence 96
No 20
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-86 Score=744.13 Aligned_cols=532 Identities=20% Similarity=0.201 Sum_probs=417.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFH-LLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~-~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
...+.+++.+..|.++..+++.......... .......+..+.++.++..++.++..+.....+.++..++|.++|+|+
T Consensus 24 ~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l 103 (574)
T PRK11160 24 LAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKL 103 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666667667777775542211000 000000112233334455667777778888899999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFW-RLSKAYLR 185 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~-~~~~~~~~ 185 (597)
+++|+++|++.++|++++|+++|++.++.++.+.+.+++.+++.++++++++++++|.+++++++++++.. ++...+.+
T Consensus 104 ~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 183 (574)
T PRK11160 104 LPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYR 183 (574)
T ss_pred hccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987765554433 23344444
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy1502 186 TSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI- 264 (597)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 264 (597)
..+...+......+++.+.+.|.++|+++||+||.|+++.++|++..++..+...+.............++..+...++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 263 (574)
T PRK11160 184 LGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLML 263 (574)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455566778899999999999999999999999999998877655443333222222222222222211111
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccE
Q psy1502 265 LISFFFF--ADIGGKVGLAVTQTM-TLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341 (597)
Q Consensus 265 ~~~~~~~--~~~~g~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 341 (597)
.++.... ..+.|.+.+++.+.. ....++..+...+..++.+..+++|+.++++.+++.+.+.. .. ..+..+.|
T Consensus 264 ~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~--~~--~~~~~~~i 339 (574)
T PRK11160 264 WLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTT--ST--AAADQVSL 339 (574)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc--cC--CCCCCCeE
Confidence 1111111 123344444444432 23456667777788899999999999999987654221111 01 11234679
Q ss_pred EEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 342 ~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+||
T Consensus 340 ~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 419 (574)
T PRK11160 340 TLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419 (574)
T ss_pred EEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE
Confidence 999999999753 579999999999999999999999999999999999995 789999999999999999999999999
Q ss_pred eCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 420 PQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
||||+||++||+|||+++. +++++++++|++.+++++|++.++||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 420 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ilil 499 (574)
T PRK11160 420 SQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLL 499 (574)
T ss_pred cccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999874 689999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~ 563 (597)
|||||+||++||+.|+++|.+..+++|+|+||||+++++.||+|++|++|+++| +++|.|+++|+
T Consensus 500 DE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 500 DEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 999999999999999999999988999999999999999999999999999998 56788888775
No 21
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.9e-86 Score=760.77 Aligned_cols=527 Identities=22% Similarity=0.246 Sum_probs=428.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
++..+.+++.+..|.++..++|..+..... .....+.+.++++.++..++.+++.++..+.+.++..++|.++|+|+
T Consensus 154 ~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 230 (694)
T TIGR03375 154 IASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERV 230 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667788888888888876543211 01111222333334455677888888999999999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|+.| +++++|++++|+ +|++.+++++...+...+..++.++++++++++++|++++++++.+++.+++...+.+.
T Consensus 231 l~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~ 308 (694)
T TIGR03375 231 LGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRP 308 (694)
T ss_pred hCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 789999999999 79999999999888888888888888899999999999988877777666666666666
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTIL 265 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 265 (597)
.++..+......++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+..........+...+..+. +++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 388 (694)
T TIGR03375 309 LSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVV 388 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556677889999999999999999999999999998877665544333222222222222222111 11112
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 266 ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 266 ~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++.... .++.|.+.+++.+...+..++..+...+..++.+..+++|+.++++.+++.+.... .....+..+.|+
T Consensus 389 ~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~---~~~~~~~~~~I~ 465 (694)
T TIGR03375 389 VGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR---FLHRPRLQGEIE 465 (694)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---CCCCCCccceEE
Confidence 222221 34567777777888888899999999999999999999999999987665322111 011112346799
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+|+|++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+ ++|+|.+||+|+++++.++||++|+|||
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~ 545 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC
Confidence 9999999974 4679999999999999999999999999999999999995 7899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|||++|+|||+|||++++ +++++++++|++.++++||++.+ +||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 546 Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred CChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999975 58999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEEecCchhHhhHh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive~~~g~y~~l~~ 563 (597)
|||||+||++||+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|+| .|.+.++.+
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e--~G~~~eLl~ 688 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVA--DGPKDQVLE 688 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEe--eCCHHHHHH
Confidence 999999999999999999999989999999999999999999999999999998 444555543
No 22
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4e-86 Score=744.90 Aligned_cols=488 Identities=23% Similarity=0.324 Sum_probs=411.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 72 LIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQV 151 (597)
Q Consensus 72 ~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~ 151 (597)
+.++..++.+++.++....+.++..++|.++|+++++.|+++|++.++|++++|+++|++.+++.+...+..++..++.+
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK11176 74 LMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHH
Q psy1502 152 SGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYH 231 (597)
Q Consensus 152 i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~ 231 (597)
+++++++++++|++++++++.+++.+++...+.+..++..+.......++.+.+.|.++|+++||+||.++++.++|++.
T Consensus 154 ~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~ 233 (582)
T PRK11176 154 IGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKV 233 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHH
Confidence 99999999999999888777766666666666665555555555566778899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 232 QDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMI 307 (597)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (597)
.+...+...+......+......++..+...++ .++.... .++.|.+.++..++..+..++..+...+..++.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 313 (582)
T PRK11176 234 SNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877655443333222322333333322222111 1111111 345677777777777888899999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHH
Q psy1502 308 SVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAA 386 (597)
Q Consensus 308 s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L 386 (597)
+.+|+.++++.+++.+.... ...+..++|+|+||+|+|++ .+++|+|+||+|++||++||||+||||||||+++
T Consensus 314 ~~~ri~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~l 388 (582)
T PRK11176 314 ACQTLFAILDLEQEKDEGKR-----VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred HHHHHHHHhcCCCcCCCCCc-----CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHH
Confidence 99999999876544221111 11123457999999999975 4689999999999999999999999999999999
Q ss_pred Hhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-C
Q psy1502 387 IFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-A 462 (597)
Q Consensus 387 L~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~ 462 (597)
|+|+|+ ++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++++ +++|+++++|++.+++++|++++ +
T Consensus 389 l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~ 468 (582)
T PRK11176 389 LTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468 (582)
T ss_pred HHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhccc
Confidence 999995 6899999999999999999999999999999999999999999863 47999999999999999999998 9
Q ss_pred CCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEE
Q psy1502 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV 542 (597)
Q Consensus 463 GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~I 542 (597)
||||.+||+|.+|||||||||+|||||+++|+||||||||||||++||+.+.++|.++.+++|+|+||||+++++.||+|
T Consensus 469 Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~I 548 (582)
T PRK11176 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEI 548 (582)
T ss_pred ccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 543 LVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 543 ivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
++|++|+|+| ++++.|++++..
T Consensus 549 i~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 549 LVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred EEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 9999999998 556788888763
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.5e-86 Score=737.00 Aligned_cols=499 Identities=19% Similarity=0.208 Sum_probs=394.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGI--YFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 105 (597)
+..+.+++.+..|.++..+++....... ....+... ++++.++..++.++..++....+.++..++|.++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 95 (529)
T TIGR02868 21 LGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDR 95 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777787776543211 01111111 1123344456677777788888999999999999999
Q ss_pred HHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLS-KAYL 184 (597)
Q Consensus 106 ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~-~~~~ 184 (597)
++++|++||++.++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++.++++.++. ....
T Consensus 96 ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 175 (529)
T TIGR02868 96 LARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSL 175 (529)
T ss_pred hhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887776655443333 3333
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-T 263 (597)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 263 (597)
+..+...+......+++.+.+.|.++|+++||+||.|+++.++|++..+...+...+.............++..+... +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (529)
T TIGR02868 176 RAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGA 255 (529)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444557788999999999999999999999999999887765554333322222222222222211111 1
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccc
Q psy1502 264 ILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGK 340 (597)
Q Consensus 264 ~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (597)
+.++.... .++.|.+.+++.+...+..++..+...+..++.+.++.+|+.++++.+++.+..... .+....+..++
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 334 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVP-AAGALGLGKPT 334 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCC-CCcccCCCCce
Confidence 11122111 234566667777777788888888888999999999999999998866542211110 01111123457
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|+|+ ++|+|++||+|++++ .++||++|+||
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V 413 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVF 413 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEE
Confidence 9999999999866679999999999999999999999999999999999995 789999999999999 99999999999
Q ss_pred eCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
||||+||+|||+|||+++ ++++||++++|++.|+++|||+++ +||||.|||+|.+||||||||||||||+++||||||
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999997 468999999999999999999998 999999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
|||||||||++||+.|+++|.+..+++|+|+||||+
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999998999999999996
No 24
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-86 Score=699.88 Aligned_cols=531 Identities=20% Similarity=0.240 Sum_probs=432.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1502 31 DTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSP 110 (597)
Q Consensus 31 ~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 110 (597)
+.++.-+..-.++...++..+..+. ......+++.++++.++..++.+.+..+.+..+.++...+|..+++++.+++
T Consensus 11 l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~g 87 (559)
T COG4988 11 LSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLG 87 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444444456677777776542 1122334455555566667888888889999999999999999999999999
Q ss_pred chhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 111 LAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSL 190 (597)
Q Consensus 111 ~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (597)
+.+-.+.++|++.+.++..+++++..+..++++.+...+.++.+++.++++||.-++++++.+|+..+++.......+..
T Consensus 88 p~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~ 167 (559)
T COG4988 88 PAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDA 167 (559)
T ss_pred hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999887776665554433333333333333
Q ss_pred HHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 191 KYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFF 270 (597)
Q Consensus 191 ~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (597)
.+..-.....+.+++.|.++|+.|+|+||..++..++..+..+++++...............++++..+.++++++...+
T Consensus 168 s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~ 247 (559)
T COG4988 168 SEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGF 247 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445667899999999999999999999999999998888887766666665555667777766655555544433
Q ss_pred HHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEe
Q psy1502 271 FADIGGKVGLAVTQTM-----TLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQN 345 (597)
Q Consensus 271 ~~~~~g~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~n 345 (597)
.....|.+.++..++. -++.|+..+...+..-..+.++.+.++.+++.+.+...... .....+....+|+++|
T Consensus 248 ~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~ 325 (559)
T COG4988 248 RLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLEN 325 (559)
T ss_pred HHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecc
Confidence 2222144444333222 24556666667777777788899999998886654322111 1111122233466679
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
++|.||+++++++|+||++++|+++||||+||||||||+++|+||.+ ++|+|.+||+|+++++.++||+++++|||+|+
T Consensus 326 l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~ 405 (559)
T COG4988 326 LSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405 (559)
T ss_pred eEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCc
Confidence 99999988899999999999999999999999999999999999985 89999999999999999999999999999999
Q ss_pred CCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC
Q psy1502 425 LFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 425 LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS 503 (597)
||+|||||||++++ +++||++++|++.+++.||++.++|+||.+||+|.+|||||+||+|+||||+++++++|||||||
T Consensus 406 lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA 485 (559)
T COG4988 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485 (559)
T ss_pred cccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 99999999999975 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 504 aLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
+||.|||+.|+++|.++.+++|+|+||||+..+++||+|+|||+|+++| +++|.|++|+.++.
T Consensus 486 ~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~ 556 (559)
T COG4988 486 HLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556 (559)
T ss_pred CCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999 77889999987653
No 25
>KOG0057|consensus
Probab=100.00 E-value=2.8e-86 Score=692.19 Aligned_cols=528 Identities=20% Similarity=0.248 Sum_probs=409.5
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Q psy1502 34 FVEMYGRSTFFKIVNNTINQ-HHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLA 112 (597)
Q Consensus 34 ~~~~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 112 (597)
++++..|.++..+++..-.. ..+..+......+..|+++-++..+++.++..++.++.+++.++.-.++|+++++++++
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~ 123 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLS 123 (591)
T ss_pred HhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 57777787777777655311 11111222345577788888888999999999999999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 113 FFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVS-LSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLK 191 (597)
Q Consensus 113 ~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
+|.+..+|++.+.+.+....|..++.-.+..++..++-+......+ .-..+..+++++.....+..+......+..+.+
T Consensus 124 ~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR 203 (591)
T KOG0057|consen 124 FFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFR 203 (591)
T ss_pred hhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHH
Confidence 9999999999999999999999888877777777665544444332 234555555444443333322222222222333
Q ss_pred HHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 192 YLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-SFFF 270 (597)
Q Consensus 192 ~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 270 (597)
+.-+.+.......+.|++.+..+||.||.|+++.++|+....++.++..+.........+....+.......+++ +...
T Consensus 204 ~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~g 283 (591)
T KOG0057|consen 204 KAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNG 283 (591)
T ss_pred HHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344455667899999999999999999999999999887765544333333222233333332222221111 1111
Q ss_pred H---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeE
Q psy1502 271 F---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTN 347 (597)
Q Consensus 271 ~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVs 347 (597)
. .+..|.+.....+..++..++..+...+..+.++..-+...+...+.+.. ... .+.+.....++|+|+||+
T Consensus 284 i~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~--i~~---~~~~i~~~~~~I~F~dV~ 358 (591)
T KOG0057|consen 284 IAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED--IQE---AALPIELFGGSIEFDDVH 358 (591)
T ss_pred hhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh--hhh---ccCCcccCCCcEEEEeeE
Confidence 1 33456666767777777778887777777777777666655443221111 100 111122345789999999
Q ss_pred EEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 348 f~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
|+|+.++++|+++||+||+||+|||||+|||||||++++|+||++++|+|+|||+|+++++++++|+.|||||||..|||
T Consensus 359 f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn 438 (591)
T KOG0057|consen 359 FSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN 438 (591)
T ss_pred EEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccc
Confidence 99987778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCC
Q psy1502 428 GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505 (597)
Q Consensus 428 gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 505 (597)
+||.+||.+|+ ++++||+.++||++++||-|..+ +||+|.|||+|..||||||||++||||++|||||++||||||+|
T Consensus 439 dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~L 518 (591)
T KOG0057|consen 439 DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSAL 518 (591)
T ss_pred hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccccc
Confidence 99999999985 79999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 506 DPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 506 D~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
|.+||+.+.+.+.+...+||+|+|+||++++++||+|++||+|+++| ++++.|.++|.++.
T Consensus 519 D~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 519 DSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999 66778888887553
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.9e-85 Score=746.22 Aligned_cols=528 Identities=22% Similarity=0.265 Sum_probs=428.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+..++.+..|.++..++|..+.... . .....+.+.++++.++..++.+++.++....+.++..++|.++|+++++
T Consensus 148 s~~~~ll~l~~p~~~~~iid~v~~~~~-~--~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 224 (694)
T TIGR01846 148 SLALQLFALVTPLLFQVVIDKVLVHRG-L--STLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLG 224 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455667777777888887664321 1 1112223334444455567788888999999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|+.||+++++|++++|+ +|++.+++++...+.+++..++.+++.++++++++|++++++++.++++.++...+.+..+
T Consensus 225 l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~ 303 (694)
T TIGR01846 225 LPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILR 303 (694)
T ss_pred CCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 6999999999988888888888888888899999999998877766666655555555444
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST-ILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 267 (597)
+..+......++..+.+.|.++|+++||++|.|+++.++|++..++..+...+......+......++..+...+ +.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 383 (694)
T TIGR01846 304 KRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFG 383 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 443334445567789999999999999999999999999998877665544333322222233333332222211 2222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.... .++.|.+.++..++..+..|+..+...+..++.+..+++|+.++++.+++.+.... .......+.|+|+
T Consensus 384 ~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~----~~~~~~~~~i~~~ 459 (694)
T TIGR01846 384 AHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGL----AALPELRGAITFE 459 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC----CCCCCCCCeEEEE
Confidence 2221 34567777777777888899999999999999999999999999987655321110 0111234679999
Q ss_pred eeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|++ .+++|+|+||+|++||++||||+||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+|||||
T Consensus 460 ~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 460 NIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 99999964 467999999999999999999999999999999999999 5789999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 423 PVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
|++|++||+|||++++ +++++++++||+.++++++++.+ +||||.+||+|.+|||||||||+||||++++|+||||||
T Consensus 540 ~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDE 619 (694)
T TIGR01846 540 NVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE 619 (694)
T ss_pred CeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999999999999864 68999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
|||+||+++|+.+.+.|.++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|++++..
T Consensus 620 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 691 (694)
T TIGR01846 620 ATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ 691 (694)
T ss_pred CCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHh
Confidence 9999999999999999999988999999999999999999999999999998 467788888763
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.2e-84 Score=726.20 Aligned_cols=534 Identities=21% Similarity=0.262 Sum_probs=421.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS 109 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 109 (597)
.+.+++.+..|.++..++|...... .....++.++++.++..+..++......+...++..+++.++|++++++
T Consensus 29 i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 29 VLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445667777777778887654321 1111222233333333333444444445555666667778999999999
Q ss_pred CchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 110 PLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS 189 (597)
Q Consensus 110 ~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 189 (597)
|+.+|++.++|++++|+++|++++.+.+...+..++..++.+++.++++++++|++++++++++++.+++...+.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888888888888889999999999888777777666666666666555
Q ss_pred HHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy1502 190 LKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTILISF 268 (597)
Q Consensus 190 ~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 268 (597)
..+......+++.+.+.|.++|+++||+||.++.+.++|.+..+...+..........+......++..+. +.+++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556677889999999999999999999999999988877655443322222221222222221111 11112222
Q ss_pred HHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEe
Q psy1502 269 FFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQN 345 (597)
Q Consensus 269 ~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~n 345 (597)
+.. .++.|.+.++..++..+..++..+...+..+..+..+++|+.++++.+++.+.... .....+..+.|+|+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~---~~~~~~~~~~I~~~~ 339 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG---AIDLGRVKGAVEFDD 339 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC---CCCcCCCCCeEEEEE
Confidence 221 34567777777777788888888888899999999999999998875443211111 001111235799999
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
|+|+||+++++|+|+||+++||+++||||+||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||+|+
T Consensus 340 vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 340 VSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 99999865679999999999999999999999999999999999995 68999999999999999999999999999999
Q ss_pred CCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 425 LFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 425 LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
||+|||+|||+++ ++++|+++++|++.+++++++..+ +|+||.+||+|.+|||||||||+|||||+++|+||||||||
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999997 468999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcccchHH
Q psy1502 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGTVSAKV 572 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~~~~~~ 572 (597)
|+||++||+.+++.|.+..+++|+|+||||++.++.||+|++|++|+++| ++++.|++++..+..+.++.
T Consensus 500 s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~~~~~~ 577 (588)
T PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQGMLQEDE 577 (588)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhhccccch
Confidence 99999999999999999888999999999999999999999999999998 46788999987554433333
No 28
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7e-84 Score=725.38 Aligned_cols=516 Identities=23% Similarity=0.318 Sum_probs=427.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+.+++.+..|.++..+++..+..... . ........++++.++..++.+++.++....+.++..++|..+|+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 99 (571)
T TIGR02203 23 MILVAATESTLAALLKPLLDDGFGGRDR-S--VLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG 99 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCch-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444556666676677777765543211 0 011122234455555667778888888999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
.|+++|++.++|++++|+++|++.+++++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 100 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~ 179 (571)
T TIGR02203 100 LPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179 (571)
T ss_pred CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888887777777777777666
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 267 (597)
+..+......+++.+.+.|.++|+++||++|.++++.++|++..+...+..........+...+..++..+... +++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 259 (571)
T TIGR02203 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIA 259 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777888999999999999999999999999999887766554433333223233333332222111 11222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.... .++.|.+.++..++..+..|+..+...+..++.+..+.+|+.++++.+++.+.... +. .+..++|+|+
T Consensus 260 ~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~--~~~~~~i~~~ 334 (571)
T TIGR02203 260 LFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR---AI--ERARGDVEFR 334 (571)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---CC--CCCCCeEEEE
Confidence 2221 34567777778888888999999999999999999999999999876544321110 11 1234579999
Q ss_pred eeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+||||+
T Consensus 335 ~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 335 NVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred EEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 99999964 4679999999999999999999999999999999999995 689999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 423 PVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|+||+|||+|||++++ ++++++++++++.+++++++.++ +||||.+||+|.+||||||||||||||++++|||||||
T Consensus 415 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD 494 (571)
T TIGR02203 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD 494 (571)
T ss_pred cccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999874 68999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||+||++||+.+++.|.+..+++|+|+||||++.+..||+|++|++|++++
T Consensus 495 Epts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 495 EATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999988999999999999999999999999999998
No 29
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.8e-83 Score=713.67 Aligned_cols=512 Identities=19% Similarity=0.240 Sum_probs=409.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
++..+.+++.+..|.++..++|........ ......+...+++++++..++.+++.+...+.+.++..++|.++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777787788888766422111 111112233344445555677888888888999999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|+++|++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|++++++++.+++..++...+.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887776666555544455554
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-L 265 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 265 (597)
.++..+......+++.+.+.|.++|+++||+|+.|+++.++|++..++..+...+......+......++..+...++ +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555678899999999999999999999999999988776554433222222222222222222111111 1
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 266 ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 266 ~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++++.. .++.|.+.++..++..+..++..+...+..++.+..+++|+.++++.+++... .. +...+..+.|+
T Consensus 248 ~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~----~~~~~~~~~i~ 322 (529)
T TIGR02857 248 YIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KA----PVTAAPAPSLE 322 (529)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc----CCCCCCCCeEE
Confidence 111111 23455566666667777888888888999999999999999999875432111 11 11111235799
Q ss_pred EEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+|+||+. +++|+|+||+|+||+++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+|||
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 99999999764 479999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|+|||+|||+++ ++++|+++++|++.+++++|++++ +||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999986 468999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
|||||+||++||+.+++.|.++.+++|+|+||||+++++.||+|++|
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999998899999999999999999999986
No 30
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-82 Score=713.56 Aligned_cols=530 Identities=20% Similarity=0.231 Sum_probs=421.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+.+++.+..|.++..++|........ ......++..++++.++..++.+++.++....+.++..++|.++|+++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 81 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSR 81 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566778888888888888865432111 00111122233333344455666667777778899999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVS-LSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
+|+++|+++++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++.+++.+++...+.+..
T Consensus 82 ~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 82 QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred CCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888788888887766666666555 58999998877777666666666666555
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLL-YLSTILI 266 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 266 (597)
++..+......+++.+.+.|.++|+++||+||.++.+.++|.+..++..+..................+..+ .+.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444445567788999999999999999999999999998877665443332222222112222211111 1111111
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.+.. .++.|.+.++..+...+..|+..+...+..++.+.++.+|+.++++.+++.+.... . ..+..+.|+|
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~---~--~~~~~~~I~~ 316 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE---P--VPEGRGELDV 316 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC---C--CCCCCCcEEE
Confidence 22211 23566777777777788888888888999999999999999999876543211110 0 1122457999
Q ss_pred EeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 344 QNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 344 ~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+||+|+|+. ++++|+|+||+|+||+++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+||||
T Consensus 317 ~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 396 (569)
T PRK10789 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ 396 (569)
T ss_pred EEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEcc
Confidence 999999974 3579999999999999999999999999999999999995 68999999999999999999999999999
Q ss_pred CCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 422 DPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+|+||++||+|||+++ ++++++++++|++.+++++++.++ +||||.+||+|.+|||||||||+||||++++|+|||||
T Consensus 397 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 397 TPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred CCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999987 468999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|++++..+
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999998 5678899988744
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.3e-82 Score=709.22 Aligned_cols=531 Identities=19% Similarity=0.231 Sum_probs=421.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 26 EILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105 (597)
Q Consensus 26 ~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 105 (597)
.++..+.+++.+..|.++..++|....... ...++..++++.++..+..++..++...+..++..++|.++|++
T Consensus 25 ~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 98 (585)
T TIGR01192 25 VIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGR 98 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777788878888886553211 11112222222233334444444455556666677788899999
Q ss_pred HHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLR 185 (597)
Q Consensus 106 ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~ 185 (597)
++++|++||+++++|++++|+++|++.+..++...+..++..++.++++++++++++|.+++++++++++.+++...+.+
T Consensus 99 l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 178 (585)
T TIGR01192 99 IISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQ 178 (585)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888999999999998888777777776666666
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 186 TSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTI 264 (597)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 264 (597)
..++..+......+++.+.+.|.++|+++||+||.++.+.++|++..+...+.................++..+. ++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 258 (585)
T TIGR01192 179 RTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCIL 258 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555556677889999999999999999999999999988877654433222221111111222221111 1112
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccE
Q psy1502 265 LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341 (597)
Q Consensus 265 ~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 341 (597)
+++.... .++.|.+.+++.++..+..++..+...+..+..+..+++|+.++++.+++.+.... .....+..+.|
T Consensus 259 ~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~~~~~~~~~~i 335 (585)
T TIGR01192 259 VIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD---APELPNVKGAV 335 (585)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc---CCCCCCCCCeE
Confidence 2222221 33567777777777788888888888899999999999999998876543211111 01111124579
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+|+||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++++|||
T Consensus 336 ~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 336 EFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 999999999865679999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|++|++|||.++ ++++++++++|++.+++++++.++ +|+||.+||+|.+|||||||||+|||||+++|+||||
T Consensus 416 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999987 468999999999999999999987 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
|||||+||+++|+.+++.|.+..+++|+|+||||++++..||+|++|++|++++ +++|.|++++..+
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhC
Confidence 999999999999999999999888999999999999999999999999999998 5677888888644
No 32
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.5e-82 Score=709.52 Aligned_cols=531 Identities=22% Similarity=0.314 Sum_probs=423.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 107 (597)
+.++.+++.+..|.++..+++..+..... ......+..++++.++..++.+++.++...++.++..++|.++|++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 102 (576)
T TIGR02204 26 ALLITAAATLSLPYAVRLMIDHGFSKDSS---GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLI 102 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777787788888765532211 011112233333344445667777788888999999999999999999
Q ss_pred cCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 108 ~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
++|+++|++.++|++++|+++|++.+++++...+..++.+++.++++++++++++|++++++++.+++.+++...+.+..
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 182 (576)
T TIGR02204 103 SLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRV 182 (576)
T ss_pred cCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877766665555555555555
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL-STILI 266 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 266 (597)
++..+.......++.+.+.|.++|+++||+++.++++.++|++..+...+...+......++..+...+..... .++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
T TIGR02204 183 RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWV 262 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566778899999999999999999999999999988776544433322222222222222211111 11111
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.... .++.|.+.++..++..+..++..+...+..+..+..+++|+.++++.+++.+.... ......+..+.|+|
T Consensus 263 g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~ 340 (576)
T TIGR02204 263 GAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH--PKTLPVPLRGEIEF 340 (576)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC--CccCCcCCCceEEE
Confidence 12111 23556676777777888899999999999999999999999999876543211110 00111122457999
Q ss_pred EeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 344 QNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 344 ~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+||+|+||++ +++|+|+||+|+|||++||+|+||||||||+++|+|+|+ .+|+|.+||+|+++++.+++|++|+|||
T Consensus 341 ~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~ 420 (576)
T TIGR02204 341 EQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420 (576)
T ss_pred EEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEc
Confidence 9999999742 579999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|+|||+|||++++ +.++++++++++.++++++++.+ +|+||.+||+|.+|||||||||+||||++++|+||||
T Consensus 421 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ilil 500 (576)
T TIGR02204 421 QDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLL 500 (576)
T ss_pred cCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 999999999999999864 67899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~ 563 (597)
|||||+||+++|+.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++ ++++.|++++.
T Consensus 501 DEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 501 DEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred eCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 999999999999999999999988999999999999999999999999999998 34455666554
No 33
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-84 Score=654.92 Aligned_cols=477 Identities=22% Similarity=0.310 Sum_probs=396.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 84 STAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIV-SLSVN 162 (597)
Q Consensus 84 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~-l~~~~ 162 (597)
..++...++.....+--+.|.|+.++++.|+.++.+|.+...+......|+..+...+.++++.++-+....++ ...++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 34566677888888999999999999999999999999999999888888888888888888777765555444 44589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 163 PLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLF 242 (597)
Q Consensus 163 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~ 242 (597)
||.++++++.+.++.++...........++.-+.+.++.++...+++-+..++|.||.|+++..+|+...+.+.....+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99888777666655444333322223334444456667788899999999999999999999999999988876655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1502 243 VYTNMGFAYLIDFLCLLYLSTIL-ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKL 318 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 318 (597)
.....++.+....+......... +..... .++.|+++..-++.+++..|+..+.....++.++...+++.+++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 43333333333333222221111 111111 34567777777888888889988888999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCC-CcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCce
Q psy1502 319 EPEGNLSPNYEDENEIWP-VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396 (597)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~-~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~ 396 (597)
+.+....++ .++.+| ..|.|.|+||+|.|...+++|+|+||++++|+++|+||+||+||||++.||.|||+ ++|.
T Consensus 243 ~~~v~d~pd---a~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 243 EAEVSDAPD---APPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred chhhccCCC---CccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 665433222 233342 35789999999999878899999999999999999999999999999999999996 7899
Q ss_pred EEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCC
Q psy1502 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTN 474 (597)
Q Consensus 397 I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~ 474 (597)
|.+||+|++++..+++|+.||.||||..|||+|+..||.+++ ++++||++.|++.|++++||+.+ +||||.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 999999999999999999999999999999999999999974 79999999999999999999998 9999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV-- 552 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive-- 552 (597)
||||||||+||||++||+|+||+|||||||||..||+.||.+|++..+++|+++|||||||+.+||+|+||++|+|+|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ecCchhHhhHh
Q psy1502 553 ------SSFGFFFSKDL 563 (597)
Q Consensus 553 ------~~~g~y~~l~~ 563 (597)
+.+|.|++||.
T Consensus 480 ~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAAGGLYAEMWR 496 (497)
T ss_pred cHHHHHHcCChHHHHhc
Confidence 66899999985
No 34
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-81 Score=651.45 Aligned_cols=480 Identities=21% Similarity=0.311 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 78 VAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIV 157 (597)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~ 157 (597)
+..|+-.+..+.+..++..++|.++|+++...++.-..+.++||+++|++.|++.+++.+...+.+.+.+++...+..+.
T Consensus 73 ~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~ 152 (573)
T COG4987 73 AARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIG 152 (573)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHH
Q psy1502 158 SLSVNPLFSIPVLILLYL-FWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHS 236 (597)
Q Consensus 158 l~~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~ 236 (597)
+.+++|.+++.+.+++.+ .++++..+.+..+...+.-...++.+.+.+.|.+.|..+.+.||+++.+.+.+.+......
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~ 232 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWL 232 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999988766654443 3444555555555554444556677889999999999999999999999999988766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy1502 237 STWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGG-----KVGLAVTQTMTLMGVVQWAM-RQAAEVENHMISVK 310 (597)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~ 310 (597)
+...+......|....+.++..+.+... +.+.......| ...+++..++..+.++..+. ..+.++.+...|++
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~-l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~ 311 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGL-LLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHH
Confidence 5544444444443333333322221111 11111111111 12222333355566666665 56688889999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCC-ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 311 RLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 311 ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
|+.++.+.+++...+.. ..+ .+.. .++++||||+||+++ ++|+|+||++++||+|||+|+||||||||+++|.|
T Consensus 312 Rl~~i~~q~~e~~~~~~--~~~--~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 312 RLNDILDQKPEVTFPDE--QTA--TTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred HHhhhccCCcccCCCcc--ccC--Cccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 99999887665433211 011 1112 699999999997654 79999999999999999999999999999999999
Q ss_pred ccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCch
Q psy1502 390 LAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNM 466 (597)
Q Consensus 390 l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT 466 (597)
-|+ ++|+|.++|.++..++.+.+|+.|++++|.++||+||+||||... +++||||+++|++.+++++++++. +||+|
T Consensus 387 ~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t 466 (573)
T COG4987 387 AWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNT 466 (573)
T ss_pred ccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhc
Confidence 885 789999999999999999999999999999999999999999986 589999999999999999999997 99999
Q ss_pred hhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 467 ~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
++||+|.+||||||||+||||+|++|+|++||||||.+||++||+.|++.|.+..++||+|+||||+..++.||||+|||
T Consensus 467 ~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~ 546 (573)
T COG4987 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLD 546 (573)
T ss_pred hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEE--------ecCchhHhhHh
Q psy1502 547 SGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 547 ~G~Ive--------~~~g~y~~l~~ 563 (597)
+|+|+| .++|.|+++++
T Consensus 547 ~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 547 NGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred CCeeeecCCHHhhhccccHHHHHhc
Confidence 999999 55677777664
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2e-78 Score=676.11 Aligned_cols=514 Identities=17% Similarity=0.183 Sum_probs=401.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 24 QFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMF 103 (597)
Q Consensus 24 ~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 103 (597)
...++..+.+++.+..|.++..++|..+..... .....+++.++++.++..++.+++.++....+.++..++|.++|
T Consensus 10 ~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 86 (544)
T TIGR01842 10 IVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV---PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIF 86 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677888888888888876532211 11112233333444455677788888888899999999999999
Q ss_pred HHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 104 EAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPK-AMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKA 182 (597)
Q Consensus 104 ~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~-~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~ 182 (597)
++++++|+. ..+...+++++|++.+++++.. .+..++..++.+ +.++++++++|++++++++.+++.+++...
T Consensus 87 ~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~l~~~i~~~ 160 (544)
T TIGR01842 87 AASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLLVCFLLHPWIGILALGGAVVLVGLALL 160 (544)
T ss_pred HHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999984 2366789999999999998877 444444444444 445678999999988776665555555444
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 183 YLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-L 261 (597)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 261 (597)
+.+..++..+......+++.+.+.|.++|+++||+||.++++.++|++..++..+...+..............+..+. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (544)
T TIGR01842 161 NNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQS 240 (544)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444456667788999999999999999999999999998877654433322221111111122221111 1
Q ss_pred HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCc
Q psy1502 262 STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVL 338 (597)
Q Consensus 262 ~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (597)
.++.++++.. .++.|.+.+++.++..+..++..+...+..++.+..+.+|+.++++.+++.... . . ..+..
T Consensus 241 ~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~---~--~~~~~ 314 (544)
T TIGR01842 241 LVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-M---P--LPEPE 314 (544)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-C---C--CCCCC
Confidence 1112222221 345677777777778888999999999999999999999999998765442211 0 0 11124
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+.|+++||+|+|++ ++++|+|+||+++||+++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 57999999999975 3689999999999999999999999999999999999985 789999999999999999999999
Q ss_pred EEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||||+|++|++|++|||++++ ++++++++++++.++++++++.+ +|+||.+||+|.+|||||||||+||||++++|+
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 58999999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||||+||+++|..+.+.|.++. +++|+|+||||++++..||+|++|++|++++
T Consensus 475 ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIAR 533 (544)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999885 5899999999999999999999999999998
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.2e-79 Score=734.43 Aligned_cols=479 Identities=22% Similarity=0.276 Sum_probs=386.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 66 IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145 (597)
Q Consensus 66 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i 145 (597)
.+.+++++++.+++.+++.+++.+++.++..++|.++|++++++|++||++.++|++.+++++|++.++..+...+..++
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~ 179 (1466)
T PTZ00265 100 IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIF 179 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHH
Q psy1502 146 QGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILV 225 (597)
Q Consensus 146 ~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~ 225 (597)
..+++++++++++|+++|.+++++++++++++++..++.+..+...+......++..+.+.|+++|+++||+|+.|+++.
T Consensus 180 ~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 259 (1466)
T PTZ00265 180 TYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTIL 259 (1466)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHH
Confidence 99999999999999999999998888888777776666666555555555555678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHH
Q psy1502 226 EEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTILISFFFFA-----------DIGGKVGLAVTQTMTLMGVVQ 293 (597)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~g~i~~~~~~~~~~~~~~~ 293 (597)
++|++......+...+.............++..+. ..+++++..... ...|.+.+++.+.+.....+.
T Consensus 260 ~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~ 339 (1466)
T PTZ00265 260 KKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLT 339 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHH
Confidence 99998776655443322222221111222211111 111111111111 112333322222222222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEE
Q psy1502 294 WAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIG 371 (597)
Q Consensus 294 ~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~va 371 (597)
.+...+..++.+.++++|++++++.+++.+.... . ...+..+.|+|+||+|+|+++ .++|+|+||+|++||++|
T Consensus 340 ~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~---~-~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~va 415 (1466)
T PTZ00265 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDD---G-KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---C-ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEE
Confidence 4455677889999999999999987654321111 0 111123479999999999753 369999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcccc-CCceEEE-cceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-----------
Q psy1502 372 IVGRTGAGKSSLIAAIFRLAE-VEGVIKI-DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE----------- 438 (597)
Q Consensus 372 IVG~SGsGKSTL~~LL~~l~~-~~G~I~i-dg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~----------- 438 (597)
||||||||||||+++|+|+|+ ++|+|++ ||+|+++++..+||++||||||+|.||++||+|||.++.
T Consensus 416 IvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~ 495 (1466)
T PTZ00265 416 FVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSN 495 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcc
Confidence 999999999999999999994 7899999 579999999999999999999999999999999998742
Q ss_pred -----------------------------------------------CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhC
Q psy1502 439 -----------------------------------------------KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYE 470 (597)
Q Consensus 439 -----------------------------------------------~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge 470 (597)
+++++++++||+.+++++|+..+ +||||.+|+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~ 575 (1466)
T PTZ00265 496 YYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575 (1466)
T ss_pred ccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC
Confidence 25678999999999999999998 999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
+|.+|||||||||+|||||+++|+|||||||||+||+++|..|+++|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999986 479999999999999999999999986
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.5e-78 Score=671.25 Aligned_cols=476 Identities=15% Similarity=0.142 Sum_probs=377.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 69 YFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGV 148 (597)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~ 148 (597)
++++.++..++.++..++...++.++..++|.++|++++++|++||+++++|++++|+++|++.+++++.. +.+++..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~ 137 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIAL 137 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHH
Confidence 44445555677788888888899999999999999999999999999999999999999999999998864 77888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH--HHHH
Q psy1502 149 MQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK--ILVE 226 (597)
Q Consensus 149 ~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~--~~~~ 226 (597)
++++++++++++++|.+++++++++++.+++..+..+..++.....+...+++.+.+.|.+.|++++|+|+.++ ...+
T Consensus 138 ~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~ 217 (555)
T TIGR01194 138 AIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG 217 (555)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999988776666555544444444344444444456678899999999999999999954 5567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 227 EFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-SFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENH 305 (597)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (597)
+|.+..++..+.................++..+..++.++ +.+...++.|.+.+++.++..+..|+..+...+..++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a 297 (555)
T TIGR01194 218 AIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQA 297 (555)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666554433222111111111112111111111111 111113456777777888888889999999999999999
Q ss_pred HHHHHHHHHhhccCCCC-CCC--CCCCCC--CCCCCCcccEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCC
Q psy1502 306 MISVKRLVEYTKLEPEG-NLS--PNYEDE--NEIWPVLGKIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRT 376 (597)
Q Consensus 306 ~~s~~ri~~~~~~~~~~-~~~--~~~~~~--~~~~~~~~~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~S 376 (597)
.++++|+.++++.++++ ... +..... .......+.|+|+||+|+|++. +++|+|+||++++|+++||||||
T Consensus 298 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~s 377 (555)
T TIGR01194 298 QIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGEN 377 (555)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCC
Confidence 99999999997632211 110 000000 0001123579999999999652 36999999999999999999999
Q ss_pred CCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHH
Q psy1502 377 GAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455 (597)
Q Consensus 377 GsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~ 455 (597)
|||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||+||++||++|+++|+. +++++++++++++.++++
T Consensus 378 GsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~ 455 (555)
T TIGR01194 378 GCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIA 455 (555)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCc
Confidence 999999999999998 57899999999999999999999999999999999999999963 467899999999999999
Q ss_pred HHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHH-h-cCCcEEEEeccC
Q psy1502 456 DMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-K-FADCTVLTIAHR 532 (597)
Q Consensus 456 ~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~-~-~~~~TvI~IaHr 532 (597)
++++.+ +||||. .+|||||||||+||||++++|||||||||||+||++||+.+++.+.+ . .+++|+|+||||
T Consensus 456 ~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 456 DKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred hhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 999998 999994 79999999999999999999999999999999999999999988743 3 468999999999
Q ss_pred chhHhhcCEEEEEeCCeEEE
Q psy1502 533 LHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 533 lsti~~~D~Iivl~~G~Ive 552 (597)
+++++.||+|++|++|+|+|
T Consensus 531 ~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 531 DQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999998
No 38
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.9e-74 Score=639.79 Aligned_cols=464 Identities=14% Similarity=0.143 Sum_probs=356.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 74 VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSG 153 (597)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~ 153 (597)
++..++.+++.++...++.++..++|.++|++++++|+++|+++++|++++|+++|++.+...+. .+..++.+++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 59 LLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33345667778888889999999999999999999999999999999999999999999998765 46778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchH---HHHHHHHHH
Q psy1502 154 ALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAA---KILVEEFDY 230 (597)
Q Consensus 154 ~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e---~~~~~~~~~ 230 (597)
+++++++++|.+++++++++++.+++...+.+..++..+......+++.+.+.|.++|+++++ ++.+ +.+.++|++
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 999999999999988777777666665556555554444445566778899999999999995 5443 456677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 231 HQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF-ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISV 309 (597)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 309 (597)
..+...+.................++.....++..+..... ....+...++..+...+..|+..+...+..++.+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 296 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAF 296 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554332222111111111111111111111111000000 01111222223333345578888888899999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 310 KRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 310 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+.++++.+++.+.+.. .+ .+..+.|+|+||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|
T Consensus 297 ~ri~~l~~~~~~~~~~~~---~~--~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 297 NKLNKLALAPYKAEFPRP---QA--FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred HHHHHHhccccccccccc---cc--cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999998754432211110 00 1123579999999999866679999999999999999999999999999999999
Q ss_pred ccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhh
Q psy1502 390 LAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV 468 (597)
Q Consensus 390 l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~v 468 (597)
+|+ ++|+|.+||+|+++++.+++|++|+|||||+++|++|++|| +.+.++++++++++.+++.+++...+|.
T Consensus 372 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 444 (547)
T PRK10522 372 LYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLELEDGR---- 444 (547)
T ss_pred CCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhccccC----
Confidence 994 78999999999999999999999999999999999999999 3467788888888888776665433332
Q ss_pred hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 469 YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 469 ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
.+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|+
T Consensus 445 -~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 523 (547)
T PRK10522 445 -ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMR 523 (547)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEE
Confidence 2489999999999999999999999999999999999999999999997654 4799999999999999999999999
Q ss_pred CCeEEE
Q psy1502 547 SGVAVV 552 (597)
Q Consensus 547 ~G~Ive 552 (597)
+|+++|
T Consensus 524 ~G~i~e 529 (547)
T PRK10522 524 NGQLSE 529 (547)
T ss_pred CCEEEE
Confidence 999998
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.4e-72 Score=680.87 Aligned_cols=508 Identities=16% Similarity=0.189 Sum_probs=368.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAG-ISR---STAFYSACMRCSKGIHKKMFE 104 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~---~~~~~~~~~~~~~~lr~~l~~ 104 (597)
+.+..++....|.++..+++....... .... +.+++++++..++. +.. .+....++.++...++..+|+
T Consensus 310 ~i~~~~~~~~~P~ll~~li~~~~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~ 382 (1495)
T PLN03232 310 KIGHDLSQFVGPVILSHLLQSMQEGDP-----AWVG--YVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFH 382 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-----cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778777777775433211 0111 11222222222221 111 112245677788888899999
Q ss_pred HHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy1502 105 AVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLI---LLYLFWRLSK 181 (597)
Q Consensus 105 ~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~---~~~~~~~~~~ 181 (597)
|++++|..++++.++|++++++++|++.+++++ ..+..++..++.+++++++++. .+++..++ +++++..+..
T Consensus 383 k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~---~lg~~~l~~~~v~~l~~pl~~ 458 (1495)
T PLN03232 383 KSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQ---QLGVASLFGSLILFLLIPLQT 458 (1495)
T ss_pred HHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886 5566666666655555444332 22222211 1111112223
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL 261 (597)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (597)
.+.+..++..+.......++.+.+.|.++|+++||+|+.|+.+.+++++..+...+...+......+......... ..+
T Consensus 459 ~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 537 (1495)
T PLN03232 459 LIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP-VVV 537 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3334444444444445566788999999999999999999999999988766544433222211111111111111 111
Q ss_pred HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCc
Q psy1502 262 STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVL 338 (597)
Q Consensus 262 ~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (597)
.++.++.+.. .++.|.+.+++.++..+..|+..+...+..+..+.++++|+.++++.+++..... ++ ..+..
T Consensus 538 ~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~----~~-~~~~~ 612 (1495)
T PLN03232 538 TLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN----PP-LQPGA 612 (1495)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc----CC-cCCCC
Confidence 1111222111 2345566666667777788888888889999999999999999987654321111 00 01123
Q ss_pred ccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcC
Q psy1502 339 GKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~ 415 (597)
+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+ .+|.+. .+|++
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 46999999999964 3679999999999999999999999999999999999986 578763 35889
Q ss_pred cEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+||||+|+||+|||||||.++++++++++++|++.|+++++++.+ +|+||.|||+|.+||||||||||||||+|++|+
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999889999999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 495 ILVLDEATANVDPKTDLLIQRT-IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||||||||||+++|+.|.+. +....+++|+|+||||++++..||+|++|++|+|++ +.++.|++++..+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence 9999999999999999988654 666778999999999999999999999999999998 4567788877643
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-71 Score=675.43 Aligned_cols=457 Identities=17% Similarity=0.187 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 88 YSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSI 167 (597)
Q Consensus 88 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l 167 (597)
..++.++...++..+|+|.+++|..++.+.++|++++++++|++.++.++ ..+..++..++.+++++++++..-.+.++
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888999999999999999999999999999999999999987 45666667777666665555442222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 168 PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247 (597)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (597)
+.++++++++.+...+.+..++..+.......++.+.+.|.++|+++||+|+.|+.+.+++.+..+...+...+......
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333333444444444556678899999999999999999999999998876654433222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy1502 248 GFAYLIDFLCLLYLSTILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNL 324 (597)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 324 (597)
+......... ..+.++.++.+.. .++.|.+.+++.++..+..|+..+...+..+..+.++++|+.++++.++....
T Consensus 525 ~~~~~~~~~~-~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIP-VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 1111111110 1111111222111 23455555555666667778888888889999999999999999875533211
Q ss_pred CCCCCCCCCCCCCcccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC-ceEEEc
Q psy1502 325 SPNYEDENEIWPVLGKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE-GVIKID 400 (597)
Q Consensus 325 ~~~~~~~~~~~~~~~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~-G~I~id 400 (597)
+. ++ ..+..+.|+|+||+|+|++ ++++|+|+||+|++|+++|||||||||||||+++|+|+++ .+ |+|.+
T Consensus 604 ~~----~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 PN----PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred cC----Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 11 00 0112346999999999964 3679999999999999999999999999999999999985 78 89974
Q ss_pred ceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhH
Q psy1502 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 401 g~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQ 479 (597)
|++|+||||+|+||+|||||||.++.+++++++++|++.|+++++++.+ +|++|.|||+|.+|||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 7799999999999999999999999889999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHH-HHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE------
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ-RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV------ 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~-~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive------ 552 (597)
|||||||||+|++|+||||||||||||+++++.|. +.+....+++|+|+||||++.+..||+|++|++|+|++
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999885 56777778999999999999999999999999999998
Q ss_pred --ecCchhHhhHhh
Q psy1502 553 --SSFGFFFSKDLI 564 (597)
Q Consensus 553 --~~~g~y~~l~~~ 564 (597)
++++.|++++..
T Consensus 826 L~~~~~~~~~l~~~ 839 (1622)
T PLN03130 826 LSNNGPLFQKLMEN 839 (1622)
T ss_pred HHhcchhHHHHHHh
Confidence 345667777653
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8.6e-71 Score=570.35 Aligned_cols=522 Identities=19% Similarity=0.223 Sum_probs=393.8
Q ss_pred hhhHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 17 ATREEYRQ----FEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACM 92 (597)
Q Consensus 17 ~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (597)
...-.||. -.++..+..++.+.+|.++.++-|..+...+.. +.....+..++++++..++.++|..+..+++.
T Consensus 16 a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~---TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~ 92 (580)
T COG4618 16 AVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP---TLVMLTVLALGLYAFQGLLDAIRSRVLVRIGE 92 (580)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445553 334444445677778888889998877654321 11222223334455666788899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 93 RCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKA-MLDAAQGVMQVSGALIVSLSVNPLFSIPVLI 171 (597)
Q Consensus 93 ~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~-~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~ 171 (597)
++...+...+|....+.|.. .+.+|+=.+-+ +|.+++++|+... ...++-...+ .+.++++|.++||+.+..+.
T Consensus 93 ~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~-P~yl~v~fl~Hp~lG~~a~~ 167 (580)
T COG4618 93 RLDRQLNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWM-PLYLAVIFLFHPWLGLIALA 167 (580)
T ss_pred HHHHHhccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877765 34455444444 6999999998763 3444444444 44566778899999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 172 LLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAY 251 (597)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (597)
...+++.+...-....++-.+.........+.....+..+.++|++.|......++|.+....+..........+..+..
T Consensus 168 ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~ 247 (580)
T COG4618 168 GAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGA 247 (580)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 65554444333333333333333344455567888899999999999999999999988876654432222111121111
Q ss_pred HHHHHHHHHH-HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy1502 252 LIDFLCLLYL-STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPN 327 (597)
Q Consensus 252 ~~~~~~~~~~-~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~ 327 (597)
..-.+=...- .++..+.+.. .+++|.+.+.-..+...+.|+-..+..|.++..+..|.+|+.+++...|.....
T Consensus 248 ~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-- 325 (580)
T COG4618 248 LSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-- 325 (580)
T ss_pred HHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC--
Confidence 1111111111 1111122211 345554444334445667889999999999999999999999998865542211
Q ss_pred CCCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC
Q psy1502 328 YEDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE 405 (597)
Q Consensus 328 ~~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~ 405 (597)
-+.+...|.+.+|++++.-|+ ++++|+|+||++++|+-+|||||||||||||+++|.|.+ |.+|.|.+||-|++
T Consensus 326 ----m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 326 ----MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred ----CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhh
Confidence 111123678999999997764 458999999999999999999999999999999999987 57899999999999
Q ss_pred CCChHHHhcCcEEEeCCCCCCCccHHhhcc-cCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHH
Q psy1502 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 406 ~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~-~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.+.+=++|||.|||..||+|||+|||+ |+++.++|.|.+|++.|+.||.|..+ +||||.|||+|..|||||||||
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred cCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 999999999999999999999999999996 56689999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++|||||.||.+++||||-|+||.+-|+.+.++|.+.. ++.|+|+||||++.+..+|+|+||++|++..
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA 551 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHh
Confidence 99999999999999999999999999999999998765 4899999999999999999999999999854
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.7e-67 Score=593.56 Aligned_cols=496 Identities=14% Similarity=0.115 Sum_probs=379.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 33 AFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSL----IVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 33 a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
+++.+..|.+...+++..+..... .....++.++++ .++..+..++..++......++..+++.++|++...
T Consensus 109 t~~~l~~~~l~~~iid~l~~~~~~----~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 184 (659)
T TIGR00954 109 TYLSVYVATLDGQIESSIVRRSPR----NFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTF 184 (659)
T ss_pred HHHHHHHHHHhhHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 345556666667777776643210 011112222222 223334445555556667777888888888888888
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLS-VNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
.+..+|++ ++|++.+|+++|++.+...+...+..++..++.++++++.++. .+|.+++++++..++..++.+++.+..
T Consensus 185 ~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 263 (659)
T TIGR00954 185 YKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPI 263 (659)
T ss_pred EEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccch
Confidence 88888886 7999999999999999999999999999999999988888886 999998888888888778888888777
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLL---YLSTI 264 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 264 (597)
.+..+......+++.+.+.|.++|+++||+|+.++.+.++|++..++..+..........++..+..++... .++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 777766777788899999999999999999999999999999988776655444433333333333333211 11111
Q ss_pred HHHH-HHH-------HhhhhHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC-------
Q psy1502 265 LISF-FFF-------ADIGGKVGL-AVTQ---TMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLS------- 325 (597)
Q Consensus 265 ~~~~-~~~-------~~~~g~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~------- 325 (597)
+.+. +.. .++.|.+.. ++.+ +..+..++..+.....+++.+.++.+|++++++.+++....
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111 110 012233222 3333 44567888888889999999999999999998753321100
Q ss_pred CCCCCC-------------CCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 326 PNYEDE-------------NEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 326 ~~~~~~-------------~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
...... .......+.|+++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|++|
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~ 503 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP 503 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 000000 0001123569999999999766679999999999999999999999999999999999986
Q ss_pred -CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--------CCChHHHHHHHHHhcHHHHHHhcCC
Q psy1502 393 -VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--------KYPDYVLWTALQEVELKDMIMEGAG 463 (597)
Q Consensus 393 -~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--------~~~~e~i~~a~~~a~l~~fI~~l~G 463 (597)
++|+|.+|+ |++|+||||+|++|++|++|||.++. +.++++++++++.+++++++..+.|
T Consensus 504 ~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 572 (659)
T TIGR00954 504 VYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGG 572 (659)
T ss_pred CCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCC
Confidence 679999874 67899999999999999999998742 3578899999999999999887799
Q ss_pred CchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEE
Q psy1502 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 464 ldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
|||..+ .+.+||||||||++||||++++|++||||||||+||++++..+.+.+++. ++|+|+||||+++++.||+|+
T Consensus 573 ~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il 649 (659)
T TIGR00954 573 WSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLL 649 (659)
T ss_pred cccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEE
Confidence 999987 46799999999999999999999999999999999999999999999874 899999999999999999999
Q ss_pred EEeC
Q psy1502 544 VMDS 547 (597)
Q Consensus 544 vl~~ 547 (597)
+|++
T Consensus 650 ~l~~ 653 (659)
T TIGR00954 650 YMDG 653 (659)
T ss_pred EEeC
Confidence 9974
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.1e-65 Score=619.36 Aligned_cols=513 Identities=16% Similarity=0.144 Sum_probs=364.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYI--GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 107 (597)
++..++....|.++..+++........ ....+. ..++++.++..++.....+.....+.++...++..+|+|++
T Consensus 327 l~~~~~~~~~P~ll~~li~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 402 (1522)
T TIGR00957 327 AIHDLMMFIGPQILSLLIRFVNDPMAP----DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL 402 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777654332211 011111 11112222222222222234556788899999999999999
Q ss_pred cCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 108 ~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
++|..++++.++|++++++++|++.+.... ..+..++..++.+++++++++..-.+.+++.++++++++.+...+.+..
T Consensus 403 ~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~ 481 (1522)
T TIGR00957 403 VITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKT 481 (1522)
T ss_pred hCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988754 4555565666655555544333222222222222222333333333333
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILIS 267 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (597)
+...+.......+..+.+.|.++|+++||.|+.|+.+.+++++..+...+........... ..........++.++.++
T Consensus 482 ~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~ 560 (1522)
T TIGR00957 482 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV-GTFTWVCTPFLVALITFA 560 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444445566778999999999999999999999999988776544332222111111 111111111111111111
Q ss_pred HHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 268 FFFF-----ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 268 ~~~~-----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
.+.. .+..+.+...+.++..+..|+..+...+..+..+.++++|+.++++.+++.+.... .........+.|+
T Consensus 561 ~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~ 638 (1522)
T TIGR00957 561 VYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIE--RRTIKPGEGNSIT 638 (1522)
T ss_pred HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc--ccccCCCCCCcEE
Confidence 1111 11223233333444456678888888899999999999999999976543211100 0000001123699
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
++|++|+|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.+|| +|+|||
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~ 705 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVP 705 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEc
Confidence 9999999964 3679999999999999999999999999999999999985 789999987 599999
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|+|++|++||+|||.++.+.++++..++++.|++.+++..+ +|++|.+||+|.+|||||||||+||||++++|+|+|||
T Consensus 706 Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 706 QQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred CCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999998777888899999999999999988 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHH---hcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHh
Q psy1502 500 EATANVDPKTDLLIQRTIRK---KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~---~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~ 563 (597)
|||||||+++++.|.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+|++ ++++.|.+++.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 860 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHH
Confidence 99999999999999999853 457899999999999999999999999999998 34567777765
No 44
>KOG0054|consensus
Probab=100.00 E-value=5.7e-64 Score=582.29 Aligned_cols=455 Identities=19% Similarity=0.226 Sum_probs=341.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 88 YSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSI 167 (597)
Q Consensus 88 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l 167 (597)
...+.++...+-..+|+|.++++-..-...++|+++|-+++|++.+.++. ..+..+...++.+++++.+++..=.+-++
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~ 345 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSAL 345 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 44667777788888999999999998888999999999999999999875 44455556666655555544432222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 168 PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247 (597)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (597)
+.++++++++.+..+..+..++.+........+....++|.++||++||.|+.|+.|.++..+..++..+...+......
T Consensus 346 ~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 346 AGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333344444444444555555666778899999999999999999999999998887665444333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy1502 248 GFAYLIDFLCLLYLSTILISFFF-F---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGN 323 (597)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~ 323 (597)
. ..+.....-.+..++.++... . ...+...-..++++..+-.|+..+...+..+.++.+|++|+.+++..++..+
T Consensus 426 ~-~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~ 504 (1381)
T KOG0054|consen 426 L-NSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDP 504 (1381)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 1 111111111111111111111 1 1122222223344445556777777788888899999999999987654322
Q ss_pred CCCCCCCCCCCCCCcccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEc
Q psy1502 324 LSPNYEDENEIWPVLGKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKID 400 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~id 400 (597)
.... .....+....|+++|.+|++++ .++.|+||||+|++|+.+||||+.|||||+|+..|+| +...+|++.++
T Consensus 505 ~~~~---~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~ 581 (1381)
T KOG0054|consen 505 DSVE---RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN 581 (1381)
T ss_pred cccc---cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence 1111 0111123446999999999953 4569999999999999999999999999999999999 55689999998
Q ss_pred ceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhH
Q psy1502 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 401 g~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQ 479 (597)
|. ++||||+||||||||||||.||.+++++...++++.|+|...++.+ .|-.|.|||+|.||||||
T Consensus 582 gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 582 GS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred Ce-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 73 9999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHH-HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEEecCchh
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFF 558 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I-~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive~~~g~y 558 (597)
||||++|||+|+|+||++||+|.||+|+.+.+.| .+.|..+.++||+|.|||.++.+++||+|++|++|+|++ .|.|
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~--~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVE--SGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEec--ccCH
Confidence 9999999999999999999999999999998887 566788889999999999999999999999999999998 5555
Q ss_pred HhhH
Q psy1502 559 FSKD 562 (597)
Q Consensus 559 ~~l~ 562 (597)
.++.
T Consensus 727 ~el~ 730 (1381)
T KOG0054|consen 727 EELL 730 (1381)
T ss_pred HHHH
Confidence 5555
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.2e-62 Score=594.43 Aligned_cols=498 Identities=16% Similarity=0.148 Sum_probs=359.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYI--GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
+++..++.+..|.++..+++........ .....+. ..++++.++..++.....+.....+.++...+...+|+|+
T Consensus 89 ~~~~~~~~~~~P~ll~~li~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~ 165 (1490)
T TIGR01271 89 LYFGEATKAVQPLLLGRIIASYDPFNAP---EREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKT 165 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777887777777654211110 0011111 1111222222233333444555677778888888889999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
++++...+++.++|++++++++|++.+...+... ..++..++.+++++++++...++.+++.++++++++.+..++.+.
T Consensus 166 L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 166 LKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred HhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876544 445566666666666666666655554444444444444455554
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI 266 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (597)
....++.......++.+.+.|.++||++||.|+.|+.+.+++.+..+...+..........+.. ...........++.+
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f 323 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYS-SAFFFSGFFVVFLSV 323 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444444445556778899999999999999999999999998877654443322221111111 111111111111111
Q ss_pred HHHHH--HhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF--ADIGGKVGLAVTQTMTLMGVV-QWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~--~~~~g~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.+.. ....+.+...++++..+..++ ..+...+..+..+.++++||.+++..++...... . .....|++
T Consensus 324 ~~y~~~~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~----~~~~~i~~ 395 (1490)
T TIGR01271 324 VPYALIKGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----N----LTTTEVEM 395 (1490)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----c----CCCCceEE
Confidence 11111 112223233334444443443 4577778888899999999999997654321110 0 01235889
Q ss_pred EeeEEEeCC---------------------------------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 344 QNTNVRYLS---------------------------------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 344 ~nVsf~Y~~---------------------------------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++|+|+. .+++|+|+||+|++|+.++|+||+|||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 999998842 13589999999999999999999999999999999998
Q ss_pred c-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhh
Q psy1502 391 A-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTV 468 (597)
Q Consensus 391 ~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~v 468 (597)
+ |.+|+|.+|| +|+||||+|++|++||+|||.++...++++..++++.|++.+++..+ +|++|.+
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~v 542 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVL 542 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccc
Confidence 8 4789999998 59999999999999999999988767777788899999999999998 9999999
Q ss_pred hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 469 YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT-IRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 469 ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
||+|.+|||||||||+||||++++|+|+||||||||||+++++.|.+. +.++.+++|+|+|||+++.+..||+|++|++
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~ 622 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHE 622 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 6777789999999999999999999999999
Q ss_pred CeEEE
Q psy1502 548 GVAVV 552 (597)
Q Consensus 548 G~Ive 552 (597)
|+|++
T Consensus 623 g~i~~ 627 (1490)
T TIGR01271 623 GVCYF 627 (1490)
T ss_pred CEEEE
Confidence 99987
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.6e-59 Score=565.29 Aligned_cols=509 Identities=13% Similarity=0.144 Sum_probs=368.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
+.+++..++.+..|.++..+++-...... .......++..+++..++..++.....+.....+.++...+...+|+|+
T Consensus 251 ~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~ 328 (1560)
T PTZ00243 251 PFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKC 328 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556778888777676654322111 0000001111111222222333333445556678888889999999999
Q ss_pred HcCCchhhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFS--TNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYL 184 (597)
Q Consensus 107 l~~~~~~f~--~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~ 184 (597)
++++...+. +.++|++++.+++|++.+..++ ..+..++..++.+++++++++.+-.+.+++.++++++++.+..++.
T Consensus 329 l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~-~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~ 407 (1560)
T PTZ00243 329 FTISSKSLAQPDMNTGRIINMMSTDVERINSFM-QYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407 (1560)
T ss_pred HhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 5689999999999999999987 4456777888888888888777766666655555555555555555
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI 264 (597)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (597)
+.....++.......+..+.+.|.++||++||.++.|+.+.+++.+..+...+..........+...+.. ....++.++
T Consensus 408 k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~-~~p~l~~~~ 486 (1560)
T PTZ00243 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNN-ATPTLMIAV 486 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5544444444455666788999999999999999999999999998876554443332222221111111 111111111
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-----CCC---------C
Q psy1502 265 LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGN-----LSP---------N 327 (597)
Q Consensus 265 ~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~-----~~~---------~ 327 (597)
+++.+.. .++.+.+...+.++..+..|+..+...+..+..+.+|++||.++++.++... ... .
T Consensus 487 ~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 566 (1560)
T PTZ00243 487 VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHST 566 (1560)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccc
Confidence 1222111 2345555555666667777888888899999999999999999997643100 000 0
Q ss_pred C-C------C-------C---------------------------CCCCCCcccEEEEeeEEEeC---------------
Q psy1502 328 Y-E------D-------E---------------------------NEIWPVLGKIEFQNTNVRYL--------------- 351 (597)
Q Consensus 328 ~-~------~-------~---------------------------~~~~~~~~~I~f~nVsf~Y~--------------- 351 (597)
. . + + +......+.+.++|++|+++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1560)
T PTZ00243 567 ACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGG 646 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 00000113477888877642
Q ss_pred ------------------------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC
Q psy1502 352 ------------------------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED 406 (597)
Q Consensus 352 ------------------------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~ 406 (597)
+++++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~------- 719 (1560)
T PTZ00243 647 HEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA------- 719 (1560)
T ss_pred ccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-------
Confidence 1245899999999999999999999999999999999987 57899986
Q ss_pred CChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 407 VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 407 ~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++|+||||+|++|++||+|||.++...+++++.++++.++++++++.+ +|++|.+|++|.+|||||||||+|
T Consensus 720 ------~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaL 793 (1560)
T PTZ00243 720 ------ERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSL 793 (1560)
T ss_pred ------CCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHH
Confidence 3579999999999999999999987666677888999999999999998 999999999999999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRT-IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||++.+|+|||||||||+||+.+++.+.+. +....+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 794 ARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~ 861 (1560)
T PTZ00243 794 ARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEF 861 (1560)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998888654 444557899999999999999999999999999987
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.9e-56 Score=450.63 Aligned_cols=229 Identities=36% Similarity=0.692 Sum_probs=214.9
Q ss_pred ccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 339 ~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
|.|+|+||+|+|+ +.+++|+|+||+|++||++||+|+||||||||+++|+|+++++|+|.+||.++..++...+|+.|+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 4689999999996 346799999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||||++.+|++|+++|+.+....++++++++++.+++.+++..+ +||+|.++|+|.+||||||||++||||++++|+||
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999865557789999999999999999998 99999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcc
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGT 567 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~ 567 (597)
||||||++||+++...+++.|.+...++|+|+||||++++..||||++|++|++++ +.++.|++++.+.+.
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 239 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDR 239 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcch
Confidence 99999999999999999999998888899999999999999999999999999999 445778888876654
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-51 Score=423.99 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=190.8
Q ss_pred CCCcccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC-
Q psy1502 335 WPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED- 406 (597)
Q Consensus 335 ~~~~~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~- 406 (597)
|+..+.|+|+|++|+|+ ..+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||+++.+
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 55667899999999996 34579999999999999999999999999999999999873 48999999999974
Q ss_pred -CChHHHhcCcEEEeCCCCCCCccHHhhcccCC---CCChHHH-----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh
Q psy1502 407 -VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDYVL-----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477 (597)
Q Consensus 407 -~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e~i-----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG 477 (597)
.+...+|+.++||||+|++|++|++|||.++. ..++++. .++++.++++ +++++.++++|.+|||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~------~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW------DEVKDDLDKAGNALSG 228 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc------chhhhhhhCCcccCCH
Confidence 45678899999999999999999999998642 2444443 3444444432 3567889999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCc
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFG 556 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g 556 (597)
|||||++||||++++|+|||||||||+||+++...+++.|+++.+++|+|+|||++.++.. ||+|+||++|+|+| .|
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e--~g 306 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE--AG 306 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE--eC
Confidence 9999999999999999999999999999999999999999999889999999999999987 99999999999998 33
Q ss_pred hhHhhH
Q psy1502 557 FFFSKD 562 (597)
Q Consensus 557 ~y~~l~ 562 (597)
...++.
T Consensus 307 ~~~~l~ 312 (329)
T PRK14257 307 ETKTIF 312 (329)
T ss_pred CHHHHh
Confidence 344443
No 49
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-51 Score=383.56 Aligned_cols=206 Identities=25% Similarity=0.403 Sum_probs=188.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
.++++|+++.|. .+.+|+|||++|++++.+|++|||||||||+++.+.|+.+ .+|+|.+||+|+.+. +...
T Consensus 7 ~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 489999999996 4679999999999999999999999999999999999863 269999999999885 7889
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---C----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---K----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+|++||+|+|.|.-|..||+||+++|. . .-||-++++++.|.|||.+... +.+.+..|||||+||+|
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr------L~~sa~~LSGGQQQRLc 159 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR------LHKSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH------hhCCccCCChhHHHHHH
Confidence 999999999999999999999999863 1 1245689999999999988752 44668899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||.-+|+||+||||||||||.+..+|.+.|.++.++-|+|+|||.+....+ +|+...+-.|+++|
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999999999999999999999866 79999999999999
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-50 Score=379.95 Aligned_cols=202 Identities=25% Similarity=0.380 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC-CChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED-VPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~-~~~~~lr~~I~ 417 (597)
-|+++||+.+|. +..||+||||+|++||.++|+||||||||||+++|.+|. +++|+|.+||.++.. .+...+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 389999999996 456999999999999999999999999999999999998 578999999987743 37888999999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC----CCChHHHH----HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE----KYPDYVLW----TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~----~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+|+..||. -|+.||+..+. ..+.+|.+ +.++++ |+......-..+|||||+||+|||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V----------GL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV----------GLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc----------CchhhhhhCccccCcHHHHHHHHHHH
Confidence 9999999996 79999997642 34444332 233333 33333444567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|.-+|+++++||||||||||.-.+|.+.+.++.+ +.|.|+|||.+...+. ||||+.||+|+|+|
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie 216 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE
Confidence 9999999999999999999999999999998875 6899999999999987 79999999999998
No 51
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-50 Score=395.50 Aligned_cols=202 Identities=30% Similarity=0.395 Sum_probs=174.9
Q ss_pred EEEEeeEEEeCC----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHH
Q psy1502 341 IEFQNTNVRYLS----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~l 412 (597)
|+|+|||+.|+. ...+|+||||+|++|+..||||+||+|||||++++.+|. |++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 799999999965 246999999999999999999999999999999999997 789999999999988874 556
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcccC---CCCChHHH----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDPF---EKYPDYVL----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|++||+++|++-|++ .|+.+|+++- ...+.+++ .+.++.+ |+.-.-+.-..+||||||||++
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV----------gL~dk~~~yP~qLSGGQKQRVa 151 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV----------GLSDKADRYPAQLSGGQKQRVA 151 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc----------CChhhhccCchhcCcchhhHHH
Confidence 789999999999998 8999999863 23444443 3333333 4444455567899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||..+|+||+.|||||||||+|.+.|.+-|.+.-+ +-|+++|||-++.+++ |||+.||++|+|+|
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 99999999999999999999999999999998876533 7899999999999986 99999999999999
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.3e-48 Score=391.67 Aligned_cols=216 Identities=51% Similarity=0.797 Sum_probs=201.1
Q ss_pred CcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhc
Q psy1502 337 VLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~ 414 (597)
..+.|+++|++++|+.. +++|+|+||+|++|+.+||+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45789999999999653 579999999999999999999999999999999999985 7899999999999998888999
Q ss_pred CcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
.|+||+|++.+|++|++||+.+.....++++.++++.+++.+++..+ .|+++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875444566788888999999998887 79999999999999999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++|||||||++||++++..+.+.|.++.+++|+|++||+++.+..||+|++|++|++++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~ 234 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE 234 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999998877899999999999999999999999999987
No 53
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.2e-48 Score=383.97 Aligned_cols=214 Identities=61% Similarity=0.972 Sum_probs=201.1
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|.|+++|++++|+. ++++|+|+||+|++|+.+||+||||||||||+++|+|++ |.+|+|.+||.++.+.+...+++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 35899999999964 357999999999999999999999999999999999987 5789999999999988888899999
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|+||++.+|++|++||+.+....+.+++.++++..++.+++..+ .|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999876556778899999999999999987 9999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+||||||++||+.+...+.+.|+++.+++|+|++||++..+..||++++|++|++++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE 217 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence 999999999999999999999999877899999999999999999999999999976
No 54
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.3e-48 Score=386.51 Aligned_cols=212 Identities=35% Similarity=0.537 Sum_probs=196.3
Q ss_pred EEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++||+++|++ .+++|+|+||++++||.++|+|+||||||||+++|+|++ |.+|+|.+||.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999964 457999999999999999999999999999999999998 578999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+||++.+|+.|++||+.+.. ..+.+++.++++..++.+++..+ .|+++.....+.+||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999998753 34556777888888889999887 89999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999877899999999999998899999999999987
No 55
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-45 Score=365.94 Aligned_cols=468 Identities=16% Similarity=0.190 Sum_probs=334.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 66 IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145 (597)
Q Consensus 66 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i 145 (597)
+..++++.++..+...+.......+++.+..++|.++.+++++.|+.-+++.+++.++.++++|+..|. +-...++.+.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHH
Confidence 344445555555666677778888999999999999999999999999999999999999999999998 5556777799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH-
Q psy1502 146 QGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL- 224 (597)
Q Consensus 146 ~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~- 224 (597)
++++..+++.+.++|.||.+.++.++.+.+.++...+...+..+..+..++...++.+..+..++|.++++......++
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 9999999999999999999887777666655554444433333333333445556778889999999999987544332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---Hh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 -VEEFDYHQDLHSSTWHLFVYTNMGFA-YLIDFLCLLYLSTILISFFFF---AD-IGGKVGLAVTQTMTLMGVVQWAMRQ 298 (597)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~-~~g~i~~~~~~~~~~~~~~~~~~~~ 298 (597)
.+.|....+...+ .......+. ....+....+.+++.+.++.. .. +......+......+-+|+.+....
T Consensus 210 h~~~~~~~a~~~r~----~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgi 285 (546)
T COG4615 210 HNNLYIPDAQEYRH----HIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGI 285 (546)
T ss_pred HhhhcCcchHHHHh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhh
Confidence 2222221111111 111111111 111111111111111111111 11 1111112222233345677778888
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCC
Q psy1502 299 AAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGA 378 (597)
Q Consensus 299 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGs 378 (597)
+..+.++.++.+++.++-..|+....+.. .+. |.-..||++||.|+|++...=+.-||++|++||.|-|+|.+||
T Consensus 286 lP~l~~AqvA~~kiakle~~~~~a~~~~~--q~~---p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGs 360 (546)
T COG4615 286 LPTLLTAQVAFNKIAKLELAPYKADFPRP--QAF---PDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGS 360 (546)
T ss_pred hhHHHHHHHHHHHHHHhhcCCccccCCCC--CcC---CcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCC
Confidence 88899999999999887543332222111 111 2234699999999997655568889999999999999999999
Q ss_pred CHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHH
Q psy1502 379 GKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457 (597)
Q Consensus 379 GKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~f 457 (597)
||||+++||.|+| |++|+|++||.+++.-+++++|+-++-|+-|-+||+.++ -+...++.+.+..-++...+..-
T Consensus 361 GKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~k 436 (546)
T COG4615 361 GKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAHK 436 (546)
T ss_pred cHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhhh
Confidence 9999999999999 688999999999999999999999999999999999876 22123666666655555544332
Q ss_pred HHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchh
Q psy1502 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHT 535 (597)
Q Consensus 458 I~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlst 535 (597)
..-.+|==+ -.+||-|||.|+|+-=|++-+-||++|||=-+-=||.=.+...+.+-.+++ |||++.|||+-..
T Consensus 437 tsl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 437 TSLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred hcccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 211132111 258999999999999999999999999999999999999988877755443 8999999999999
Q ss_pred HhhcCEEEEEeCCeEEE
Q psy1502 536 IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 536 i~~~D~Iivl~~G~Ive 552 (597)
...|||++.|++|+++|
T Consensus 512 F~~ADrll~~~~G~~~e 528 (546)
T COG4615 512 FIHADRLLEMRNGQLSE 528 (546)
T ss_pred hhhHHHHHHHhcCceee
Confidence 99999999999999999
No 56
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-48 Score=370.37 Aligned_cols=205 Identities=28% Similarity=0.407 Sum_probs=177.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+|+|||+.|. ++.+++|+||+|++||.+.++|||||||||++++|.||. |++|+|+|||.|+++++...||++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999996 567999999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch--hhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM--TVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT--~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
-|..-||. .||.|||+.-. .++.+++.+-++ | ...+-|++- ....-...|||||+||+++||||..+|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~-----E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD-----E-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHH-----H-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999995 79999997532 456555433211 1 112235543 233446899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
+||+||||+|||||.|...+|+-+.++.+ ++|+|+|||++... +-+|||.+|++|+|+.
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 99999999999999999999999877654 79999999999887 4599999999999998
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-47 Score=378.56 Aligned_cols=213 Identities=42% Similarity=0.630 Sum_probs=198.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
+|+++|++++|++.+++|+|+||++++|+.++|+||||||||||+++|+|+. |.+|+|.+||.++.+.+...+|+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 5899999999975457999999999999999999999999999999999987 478999999999998888889999999
Q ss_pred EeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+||++.+|++|++||+.+.. ....+++.++++..++.++.+.+ .|+++.++.....||||||||++|||||+.+|++|
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998753 34566788888889999998887 79999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+++|+|+|||+++.+..||++++|++|++++
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIE 217 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999877899999999999999999999999999986
No 58
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-47 Score=379.45 Aligned_cols=212 Identities=38% Similarity=0.568 Sum_probs=197.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++..++|+|+||+|++|+.+||+||+|||||||+++|+|++ |++|+|.+||.++.+.+...+|+.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 478999999975567999999999999999999999999999999999998 4789999999999988888899999999
Q ss_pred eCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
+|++.+|++|++||+.++. ..+++++.++++.+++.+++..+ .|+++.+......||||||||++|||||+++|++||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998753 45667788888888999988887 899999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~ 215 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998877889999999999999999999999999987
No 59
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-47 Score=376.59 Aligned_cols=212 Identities=34% Similarity=0.546 Sum_probs=196.2
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++|+|+||++++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+...+++.|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999653 36999999999999999999999999999999999997 578999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
++|++.+|+.|++||+.++. ..+.+++.++++..++.++++.+ .|+++.++.....||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998753 34556777788888899999887 79999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~ 216 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVE 216 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEee
Confidence 99999999999999999999999888899999999999999999999999999987
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.4e-46 Score=371.93 Aligned_cols=213 Identities=34% Similarity=0.531 Sum_probs=195.5
Q ss_pred cEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
+|+++|++++|++. .++|+|+||+|++|+.+||+||||||||||+++|+|+. |.+|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999643 56999999999999999999999999999999999997 57899999999998888777888999
Q ss_pred EEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|++|++.+|..|++||+.+.. ..+.+++.++++..++.+....+ .|++|.+......||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998753 33556788888999998888877 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 999999999999999999999999876789999999999988899999999999975
No 61
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-46 Score=363.79 Aligned_cols=202 Identities=27% Similarity=0.372 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHH-
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKL- 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~l- 412 (597)
++++||+..|..+ .++|+++||+|++||.+||+||||||||||+++|.++- |++|.|.++|.|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5799999999533 36999999999999999999999999999999999986 789999999999999984 334
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhccc---CCCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhh-CCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDP---FEKYP----DYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~---~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vg-e~G~~LSGGQrQRI 483 (597)
|++||||+|+..|++ -|++||+.+ ..... .+...+.++.. |+.-... .....||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l----------gl~~~~~~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL----------GLEDRLLKKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc----------CChhhhccCCchhcCHHHHHHH
Confidence 467999999999997 599999973 12222 22233333333 3332233 45679999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||+.+|+|++.||||++||++|.+.|++.+.++.+ ++|+|+|||+......|||++.|+||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998843 689999999999999999999999999643
No 62
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.4e-43 Score=381.51 Aligned_cols=468 Identities=19% Similarity=0.216 Sum_probs=325.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChh------HHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSG------RILNRFSKDMGAVDEV 136 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG------~l~~rit~D~~~i~~~ 136 (597)
...+.+|.+++.+...+...+.++...+..+...-|...+.++.+... .||.-...| ..=+|+..|+......
T Consensus 86 ~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~ 164 (604)
T COG4178 86 WQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTET 164 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhh
Confidence 344556666666666666777777777777777778888888888777 444433333 3447999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy1502 137 LPKAMLDAAQGVMQVSGALIVSLSVNPLF---------------SIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPV 201 (597)
Q Consensus 137 ~~~~~~~~i~~~~~~i~~~i~l~~~~~~l---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
.......++.++++++...++++-.+-.+ ..++++..++..++..++.+...++.......++.+
T Consensus 165 t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~f 244 (604)
T COG4178 165 TLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADF 244 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 77778888888888777777766333322 112222222222222233332222222222233444
Q ss_pred HHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHhhhhH
Q psy1502 202 FTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYL---IDFLCLLYLSTILISFFF-FADIGGK 277 (597)
Q Consensus 202 ~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~g~ 277 (597)
...+.-.-++...|-.|+.|+.+.++.++........+.........+..+ ...++.++..++..--++ ..+..|.
T Consensus 245 R~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~ 324 (604)
T COG4178 245 RYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGG 324 (604)
T ss_pred HHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHH
Confidence 455666667788899999999988888776665544444433222222221 111111110000000000 0234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeC
Q psy1502 278 VGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKL------EPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYL 351 (597)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~------~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~ 351 (597)
+......+.++...+.++...+..+..-.+.+.|+.++.+. +++.+..... ...........|.|+|++..-|
T Consensus 325 lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~nl~l~~p 403 (604)
T COG4178 325 LMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGR-RIDFDDNADHGITLENLSLRTP 403 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccc-cccccccccceeEEeeeeEECC
Confidence 55555566667777788888888888888899999887532 1111110000 0000000135799999999998
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccH
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI 430 (597)
++...|++.||++++|+.+-|.|+||||||||++.|+|++| -+|+|..-. -+.+-|+||.|++=.||+
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTL 472 (604)
T ss_pred CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccH
Confidence 88889999999999999999999999999999999999999 579986631 246899999999999999
Q ss_pred HhhcccC--C-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 431 RKNLDPF--E-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 431 ~eNI~~~--~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
||=|+|- . +++|+++.+++.+++|.++++.+++.+.. ..-||||||||||.||.++++|++++|||||||||+
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W----~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRW----DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcH----hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 9999873 2 48999999999999999999998665553 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 508 KTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 508 ~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
++|..+.+.+++.+++.|+|.|+||.......++.+.+++
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 9999999999999999999999999998888888777654
No 63
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.1e-46 Score=365.21 Aligned_cols=200 Identities=59% Similarity=0.932 Sum_probs=179.3
Q ss_pred CCcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHh
Q psy1502 336 PVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 336 ~~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr 413 (597)
+..+.|+++|++++|+.. .++|+|+||+|++|+.+||+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 445679999999999643 479999999999999999999999999999999999984 789999999999988888889
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|+||||++.+|++|++||+.+....+++++.++++ ++.....|||||+||++||||++.+|
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~-----------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-----------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh-----------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999998654444444444332 34567899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 99999999999999999999999999877899999999999998899999999999976
No 64
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=364.83 Aligned_cols=197 Identities=23% Similarity=0.303 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.+++++|+.+|+. ..||+|+||+|++||+|+||||||||||||+++|.||. |++|+|.++|.++..- ...++|
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEE
Confidence 3789999999975 67999999999999999999999999999999999997 6889999999998543 468999
Q ss_pred EeCCCCCCC-ccHHhhcccCCCC---C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEKY---P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~~---~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. -|++||+.++-+. + .+.+.++++.+|+.+|- ..-...||||||||+||||||+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~----------~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE----------DKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh----------hcCccccChHHHHHHHHHHHHh
Confidence 999999999 5999999875321 2 23455556666555543 3446799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
.+|+||+||||+||||+.|...+|+-+.++.+ ++|+++|||+++..-. +|||+||.+ |+|.+
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~ 213 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGE 213 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceee
Confidence 99999999999999999999999999988775 4899999999988764 999999999 56644
No 65
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-46 Score=387.90 Aligned_cols=207 Identities=25% Similarity=0.328 Sum_probs=177.3
Q ss_pred cEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-------
Q psy1502 340 KIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV------- 407 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~------- 407 (597)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 48999999999642 36999999999999999999999999999999999998 4789999999998753
Q ss_pred ---------ChHHHhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCC
Q psy1502 408 ---------PLSKLRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGG 472 (597)
Q Consensus 408 ---------~~~~lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G 472 (597)
....+|++|+||+|+| .+|++|++|||.++. ..+.++..+ .+ .++++. -|++ ...+..+
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~--~~~l~~-~gL~~~~~~~~~ 174 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---LA--KFYLNK-MGLDDSYLERSP 174 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---HH--HHHHHH-cCCChhHhcCCc
Confidence 3567899999999998 799999999998752 234433322 22 233333 3665 5678889
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH-hhcCEEEEEeCCeE
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI-MDSDKVLVMDSGVA 550 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti-~~~D~Iivl~~G~I 550 (597)
.+||||||||++|||||+++|+|||||||||+||+.++..+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|+|
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998764 478999999999987 56999999999999
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
++
T Consensus 255 ~~ 256 (320)
T PRK13631 255 LK 256 (320)
T ss_pred EE
Confidence 98
No 66
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.1e-46 Score=370.20 Aligned_cols=213 Identities=32% Similarity=0.484 Sum_probs=192.9
Q ss_pred cccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhc
Q psy1502 338 LGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~ 414 (597)
.+.|+++|++++|++. .++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999642 46999999999999999999999999999999999997 57899999999998888788889
Q ss_pred CcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
.++|++|++.+|++|++||+.++. .....++.+.++...+.++++.+ .|+++.+.+...+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998743 33445556666667788888887 6999999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998778899999999999999999999999975
No 67
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.2e-46 Score=371.30 Aligned_cols=212 Identities=37% Similarity=0.591 Sum_probs=194.3
Q ss_pred EEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
|+++|++++|++ +.++|+|+||++++|+.+||+|+||||||||+++|+|++ |++|+|.+||.++.+.+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 346999999999999999999999999999999999997 57899999999998888878888999
Q ss_pred EEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|++|++.+|+.|++||+.++. ....+++.+.++..++.+++..+ .|+++.++....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998753 33456677778888888888887 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~ 217 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999998877899999999999999999999999999987
No 68
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.1e-46 Score=367.73 Aligned_cols=202 Identities=25% Similarity=0.383 Sum_probs=180.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+++|.|+. |.+|+|++||+|+.+++...+-+++||
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 378999999997 568999999999999999999999999999999999976 578999999999999999999999999
Q ss_pred EeCCC-CCCCccHHhhcccCC-----------CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDP-VLFSGTLRKNLDPFE-----------KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~-~LF~gTI~eNI~~~~-----------~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++ .-|.-|++|=+.+|+ +.+++.+.+|++..++.++.... -..||||||||+.||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~----------~~~LSGGerQrv~iA 150 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP----------VDELSGGERQRVLIA 150 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc----------ccccChhHHHHHHHH
Confidence 99995 566789999886542 11333588889999988875432 347999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
|||.++|+||+||||||+||..+..+|++.++++.+ ++|+|+|.|+++.. +.||++++|++|+|+.
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999998874 59999999999877 5699999999999998
No 69
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.1e-46 Score=390.19 Aligned_cols=202 Identities=28% Similarity=0.361 Sum_probs=174.0
Q ss_pred EEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
|+++||+++|+. ..++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999953 246999999999999999999999999999999999998 57899999999999887654 58
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
++|+||||++.+|. .|++||+.+.. ..+.+ ++.++++..++.+ ........||||||||++|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~----------~~~~~~~~LSgGqkQRV~I 151 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD----------KHDSYPSNLSGGQKQRVAI 151 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch----------hhhCChhhCCHHHHHHHHH
Confidence 89999999999995 79999997531 23332 3444454444433 3344567999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||+.+|++||||||||+||+++...+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++
T Consensus 152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~ 221 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 (343)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998764 6899999999999965 99999999999998
No 70
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-46 Score=357.70 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCC---ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhc
Q psy1502 340 KIEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~---~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~ 414 (597)
.++++|+++.|+.++ ++|+||||+|.+||++||||+||||||||+++|+|+. |.+|+|.+||.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 388999999997654 6999999999999999999999999999999999997 67899999998776643 346788
Q ss_pred CcEEEeCCCC-CCC--ccHHhhcc----cC-CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPV-LFS--GTLRKNLD----PF-EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~-LF~--gTI~eNI~----~~-~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
.|.+|+|||+ =+| .||++=|. .+ -+-..++++++++.+++.+-. .-.....||||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~---------l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF---------LDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH---------HhcCchhcChhHHHHHHHH
Confidence 9999999998 223 46666663 21 123345578888888774322 2345678999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCc--EEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC--TVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~--TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||.-+|++||||||||+||.-..+.|.+-+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE
Confidence 99999999999999999999999999999998887765 99999999999986 99999999999999
No 71
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.3e-46 Score=368.30 Aligned_cols=200 Identities=28% Similarity=0.377 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcC
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~ 415 (597)
|+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999643 46999999999999999999999999999999999998 5789999999999876543 47889
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCC---CC----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFE---KY----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~---~~----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
++||||++.+|. .|++||+.++. .. .++++.++++..++.++ ......+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK----------AHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh----------hhCChhhCCHHHHHHHHHHH
Confidence 999999999987 59999997531 11 12345555555554433 33344689999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999988743 7899999999999875 899999999985
No 72
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-45 Score=361.23 Aligned_cols=196 Identities=27% Similarity=0.410 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcC
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~ 415 (597)
|+++||+++|++. +++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 4799999999654 37999999999999999999999999999999999997 5789999998 6
Q ss_pred cEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+||||+|.+|++|++||+.+....++++..++++.+++.+++..+ .|++|.+++.+..||||||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999986555666788888888999999887 899999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHH-HHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 495 ILVLDEATANVDPKTDLLIQRT-IRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~-l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
++||||||++||+++...+.+. +.+.. .++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998888774 55553 3689999999999999999999999985
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1e-45 Score=367.54 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=172.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----c-CCceEEEcceeCCCCC--hHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----E-VEGVIKIDDIDTEDVP--LSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----~-~~G~I~idg~di~~~~--~~~l 412 (597)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ + .+|+|.++|.++...+ ...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999964 46999999999999999999999999999999999987 5 6899999999998776 5677
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCC--CCCCChhHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEG--GTNFSVGQRQL 482 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~--G~~LSGGQrQR 482 (597)
+++++||||++.+|+.|++||+.+.. .. . ++++.++++..++.+. .... +..||||||||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE----------VKDRLHALGLSGGQQQR 149 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH----------HhccCCcccCCHHHHHH
Confidence 88999999999999889999997631 11 1 2234444444444332 2223 57999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||+++|++|||||||++||+++...+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999876689999999999886 599999999999986
No 74
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=369.01 Aligned_cols=201 Identities=26% Similarity=0.381 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr~~I 416 (597)
|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. ..+|+.|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 478999999964 56999999999999999999999999999999999987 578999999999987764 5678999
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||||++.+|.+ |++||+.++. ..+.++ +.++++.. |+..........||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~ia~ 149 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAV----------GLRGAEDLYPAELSGGMKKRVALAR 149 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHc----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 999999999986 9999997631 123322 23333333 3333344455689999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+++|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~ 217 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999998754 7899999999998875 99999999999987
No 75
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.2e-46 Score=378.64 Aligned_cols=200 Identities=29% Similarity=0.422 Sum_probs=176.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+.+|++.. +|+|+||+|++||.++|+||||||||||+++|+||. |++|+|.|||.|+++++++ .+.||+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEEE
Confidence 589999999996544 999999999999999999999999999999999998 5889999999999999987 589999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|+.-||. .|++|||+|+- ..+ ++++.++++..++.+. +......||||||||+||||||.
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l----------L~r~P~~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL----------LNRKPLQLSGGQRQRVALARALV 149 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH----------HhcCcccCChhhHHHHHHHHHHh
Confidence 999999996 69999999852 222 4456777776666554 44567899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++++||||.|+||++....+...|.++.+ +.|+|.|||+-..+. -+|||.||++|+|.+
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999999999999999888887654 579999999988776 599999999999998
No 76
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=370.92 Aligned_cols=205 Identities=21% Similarity=0.399 Sum_probs=178.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc----cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA----EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~----~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|+++||++.|++ +++|+|+||++++||.++|+||||||||||+++|+|++ |.+|+|.+||.++.+.+...+|+.|
T Consensus 3 ~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 3 AKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 789999999974 57999999999999999999999999999999999986 3689999999999988888889999
Q ss_pred EEEeCCCCCCCccHHhhcccCC---CC------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE---KY------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~---~~------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+|+||++.+|+.|++||+.++. .. .++++.++++..++.+++. +...+.+.+||||||||++|||
T Consensus 82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK------DKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh------HHhcCCcccCCHHHHHHHHHHH
Confidence 9999999999999999997642 11 1223445555555544332 2345667899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++++|++|||||||++||+++...+.+.|.++..++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 99999999999999999999999999999999877899999999999886 599999999999997
No 77
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-45 Score=362.23 Aligned_cols=203 Identities=28% Similarity=0.456 Sum_probs=181.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC-CCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE-DVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~-~~~~~~lr~~I~ 417 (597)
-|+++|++|+|+++.++|+|+||+|++|+.++|+|+||||||||+++|.|+. |++|.|.+||.++. +.+...+|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 3789999999976678999999999999999999999999999999999987 57899999999998 488999999999
Q ss_pred EEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+|+| .+|..||.|.++|+. ..+.++ +.++++.+++.++ ....-.+||||||||+|||.+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~----------~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL----------LDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh----------ccCCccccCCcceeeHHhhHH
Confidence 999999 899999999999873 355554 4555555555544 344567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCC--cEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~--~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|..+|++||||||||+||+.....+.+.+.++.++ +|+|+|||++..+.. ||++++|++|+++.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 99999999999999999999999999999998764 799999999999987 99999999999976
No 78
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-45 Score=364.71 Aligned_cols=204 Identities=24% Similarity=0.359 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH----H
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK----L 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~----l 412 (597)
|+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+... +
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 57999999999999999999999999999999999998 57899999999998876432 4
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+++++||||++.+|.+ |++||+.++. ..+.++.. ..+.+.++. -|++........+||||||||++||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLER-VGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHH-cCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 5789999999999986 9999997632 12211111 112233333 255555666678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||++++|++|++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 155 LANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999998865 7899999999999989999999999985
No 79
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-45 Score=358.96 Aligned_cols=197 Identities=25% Similarity=0.379 Sum_probs=168.2
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++||+++|++.+++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.+||.++.. ..++++|+|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 46899999964357999999999999999999999999999999999997 578999999998864 45678999999
Q ss_pred CCC--CCCCccHHhhcccCC-C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 421 QDP--VLFSGTLRKNLDPFE-K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 421 Q~~--~LF~gTI~eNI~~~~-~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|++ .+|+.|++||+.++. . ..++++.++++..++.++ .......||||||||++|||||+++|++
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL----------KERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh----------cCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 998 477899999998642 1 123456666666655443 2333458999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999998873 57899999999999975 9999999999985
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=373.64 Aligned_cols=203 Identities=24% Similarity=0.366 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|+..+++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.+.+...++++|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 3899999999975567999999999999999999999999999999999997 578999999999998888888899999
Q ss_pred EeCCC--CCCCccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDP--VLFSGTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~--~LF~gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|||+| .+|..|++||+.++. ..+. +++.++++..++.++ .......||||||||++|||||
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF----------RDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH----------hcCChhhCCHHHHHHHHHHHHH
Confidence 99998 688999999998642 2222 234444555454433 2333458999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988753 789999999999985 599999999999988
No 81
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-45 Score=359.07 Aligned_cols=199 Identities=28% Similarity=0.357 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++|+|.++ +||+||||+|++|+.+||+||+|||||||+|+|+|+. |.+|+|.++|.+.++... +.+|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 48999999999765 6999999999999999999999999999999999965 789999999998876543 578999
Q ss_pred EeCCC---CCCCccHHhhcccCC-----------CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 419 IPQDP---VLFSGTLRKNLDPFE-----------KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 419 V~Q~~---~LF~gTI~eNI~~~~-----------~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|||.. +=|.-|++|=+.++. ..+.+++.+|++.+++.++... .+| .|||||+||+.
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r------~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR------QIG----ELSGGQKQRVL 149 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC------ccc----ccCcHHHHHHH
Confidence 99954 567889999986542 1235889999999999988543 343 69999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|+|||||+++|+.++..+.+-|.++.. ++|+++|+|+|+.+.. ||+|+.|++..+..
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~ 219 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIAS 219 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEec
Confidence 99999999999999999999999999999999998876 7999999999999975 99999999876654
No 82
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-45 Score=350.21 Aligned_cols=203 Identities=27% Similarity=0.420 Sum_probs=180.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC---hHHHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP---LSKLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~---~~~lr~~ 415 (597)
.|+++||+..||+++.+|+||||+|++||.|||+||||||||||++.|.|+.+ ++|+|.++|.++...+ +..||++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 48999999999988999999999999999999999999999999999999885 7899999999998887 6778999
Q ss_pred cEEEeCCCCCCC-ccHHhhcccC------------CCCChH---HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPF------------EKYPDY---VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~------------~~~~~e---~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
||+++|++-|-+ .|+.+|+..| .-++.+ +..+|+++.++.|.. ..+..+|||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A----------~qra~~LSGGQ 152 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA----------YQRASTLSGGQ 152 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH----------HHHhccCCcch
Confidence 999999999997 5999998422 123333 466777777776653 34567999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||+||||||.++|+|++=|||+|+|||++.+.|++.|++.. .+.|+|+.-|.+...++ ||||+-|++|+|+-
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 999999999999999999999999999999999999998765 47899999999999975 99999999999997
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-45 Score=366.21 Aligned_cols=202 Identities=26% Similarity=0.441 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC---hHHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP---LSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~---~~~lr~~I 416 (597)
++++||+++|++++++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999964357999999999999999999999999999999999998 57899999999998876 45678899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCCC------------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFEK------------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~~------------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+||||++.+|. .|++||+.+... .+ ++++.++++. -|++.........||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALER----------VGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHH----------cCChhhhCCCcccCCHHHH
Confidence 99999999887 699999975311 01 1122222222 2455555667789999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+++|+|||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||++++|++|++++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999875 3789999999999998 599999999999987
No 84
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.4e-45 Score=358.76 Aligned_cols=208 Identities=26% Similarity=0.355 Sum_probs=184.5
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHHhcCc
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKLRSNI 416 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~lr~~I 416 (597)
.+.|++|+|+.+.++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. ...|+.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999976678999999999999999999999999999999999998 578999999999876542 3456789
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++|++.+|+.|++||+.+....++++..++++..++.+++..+ .|++|.++....+||||||||++||||++++|++
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999875445566778888888888888776 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 496 LVLDEATANVDPKTDLLIQR--TIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~--~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
|||||||++||+.+...+.+ .++.+. .+.|+|++||+++.+..||++++|++|.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999988877 344433 3689999999999999999999999984
No 85
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-45 Score=337.99 Aligned_cols=202 Identities=28% Similarity=0.369 Sum_probs=176.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~I 416 (597)
|+|+||+..|+.++++|+||||+|++||++-++||||||||||++||++.. |+.|+|.++|.|+..+... -+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 799999999988888999999999999999999999999999999999965 8899999999999988754 489999
Q ss_pred EEEeCCCCCCC-ccHHhhcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
|+|+||--|.. -|+.||+++- ...+ .+++.++++.+++.+-. -.-...|||||+||+|||||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~----------~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA----------RALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhh----------hcCccccCchHHHHHHHHHH
Confidence 99999999885 5999999863 1223 34466677666665443 33457899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhc-CEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDS-DKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~-D~Iivl~~G~Ive 552 (597)
+..+|++||-||||-+|||++...|++.+.++- .|.||+|.||+.+.+..+ -|++.+++|+++.
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 999999999999999999999999999988764 388999999999999876 6789999999986
No 86
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-45 Score=333.10 Aligned_cols=197 Identities=26% Similarity=0.384 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|.+++|.|+|...+ -..+++|++||++||+||||||||||+|||+||. |.+|+|.|+|+|.....+. ++-++++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSML 76 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhh
Confidence 56899999996543 3678999999999999999999999999999997 7899999999999887775 6789999
Q ss_pred eCCCCCCC-ccHHhhcccCC----C---CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE----K---YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~----~---~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||.-||. -||++|+.+|- . .+.+++..|+..+|+.+|.+.+ ...||||||||+|+||+|+|
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RL----------P~~LSGGqRQRvALARclvR 146 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRL----------PGELSGGQRQRVALARCLVR 146 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhC----------ccccCchHHHHHHHHHHHhc
Confidence 99999996 69999998752 1 2355688999999998876654 34899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+-|||+||||+|||||.-.++...-+.+++. +.|++||||.++-++. +|+++++++|+|+.
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 9999999999999999999999888887764 5799999999999975 99999999999987
No 87
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-45 Score=359.57 Aligned_cols=199 Identities=29% Similarity=0.414 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. ++++++||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEE
Confidence 478999999964 57999999999999999999999999999999999987 578999999999976543 57889999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|. .|++||+.+.. ..+.+ ++.++++.. |++........+||||||||++|||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrl~la~al~~ 147 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV----------GLEGLLNRYPHELSGGQQQRVALARALAR 147 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc----------CChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 99999886 69999997532 12222 233333333 44444555567899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 148 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 148 EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999999999999998753 7899999999998765 99999999999975
No 88
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-45 Score=372.60 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=176.1
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.|+++||+++|+. .+++|+|+||+|++||++||+|+||||||||+++|+|++ |.+|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 3899999999964 246999999999999999999999999999999999997 5789999999999888888889999
Q ss_pred EEEeCCC--CCCCccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||+|+| .++..|++|||.++. ..+. +++.++++..++.+ .......+||||||||++|||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~LSgGq~qrv~lAr 153 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD----------FKEREPARLSGGQKQRVAIAG 153 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh----------HhhCCcccCCHHHHHHHHHHH
Confidence 9999998 366789999998642 2333 23445555555443 344455799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||++..+..||+|++|++|++++
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~ 220 (279)
T PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVES 220 (279)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998764 789999999999998899999999999987
No 89
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.5e-45 Score=360.49 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=172.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
|+++||+++|++ .++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||.++...+...+ +++++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 578999999964 46999999999999999999999999999999999998 478999999999988876654 678999
Q ss_pred EeCCCCCCCc-cHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|||++.+|.+ |++||+.+... ....+..+ .+.+.++.+.+++.........||||||||++||||++++|++|
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 154 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999986 99999976422 11111111 11222222233455556677899999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||++||+++...+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 9999999999999999999998875 47899999999998765 99999999999987
No 90
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-45 Score=363.08 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
++++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+... +|
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 8999999999642 46999999999999999999999999999999999997 57899999999998887643 33
Q ss_pred -cCcEEEeCCCCCCCc-cHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 -SNISIIPQDPVLFSG-TLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 -~~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+.|+||||++.+|++ |++||+.+. ...+.++..+. +.+.++. .|++........+||||||||++||||
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~-~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR-----ALEMLAA-VGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-cCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 689999999999975 999999752 12222221111 1122222 355555666678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++.+|+||||||||++||+++...+.+.|.++. +++|+|+|||+++.+..+|++++|++|+|++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999999999999874 4789999999999999999999999999987
No 91
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.2e-45 Score=359.83 Aligned_cols=199 Identities=26% Similarity=0.376 Sum_probs=169.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~I 416 (597)
|+++|++++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+++.. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 689999999964467999999999999999999999999999999999997 5789999999999887643 467899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+||++.+|. .|++||+.+.. ..+ ++++.++++..++.++ .......||||||||++||||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK----------ADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999996 69999997531 111 2344555555554433 223345899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
|+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999875 37899999999999986 89999999985
No 92
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.7e-45 Score=364.99 Aligned_cols=202 Identities=29% Similarity=0.432 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr~~I 416 (597)
|+++||+++|+.++++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++..++. ..+|+++
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 689999999963457999999999999999999999999999999999998 578999999999987654 3468899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCCC------------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFEK------------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~~------------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+||||++.+|. .|++||+.++.. .. ++++.++++.. |++.........||||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV----------GLADKAYQRADQLSGGQQ 151 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc----------CcHhhhcCCcccCCHHHH
Confidence 99999999886 699999975321 01 11222222222 455555667789999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+++|++||||||||+||+++...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999999999999999999999999999998753 689999999999985 599999999999987
No 93
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.6e-45 Score=358.93 Aligned_cols=200 Identities=30% Similarity=0.414 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr~~I 416 (597)
|+++|++++|++.+++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. ..+|+.|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999975467999999999999999999999999999999999998 578999999999987764 3478899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+|. .|++||+.++. ..+.+ ++.++++..++ +.........||||||||++||||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~G~~qrv~lara 150 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL----------SHKHRALPAELSGGEQQRVAIARA 150 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----------HHHhhCChhhcCHHHHHHHHHHHH
Confidence 99999999998 59999997531 12222 23344444333 333344456899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
++++|+++||||||++||+++...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999874 47899999999999985 899999999975
No 94
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=366.96 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=177.9
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CCh
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPL 409 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~ 409 (597)
.+.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.+||.++.. .+.
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 346999999999964 469999999999999999999999999999999999863 58999999999863 456
Q ss_pred HHHhcCcEEEeCCCCCCCccHHhhcccCC----CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFE----KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 410 ~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~----~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
..+|++|+||||++.+|+.|++||+.++. ..+. +++.++++.+++.+. +.....+...+|||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE------VKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh------hHHHHhcCCCCCCHHHHH
Confidence 67889999999999999999999997631 1222 234455555544322 234456778899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+++|+||||||||++||+.+...+.+.|.++.+++|+|+|||++..+. .||++++|++|++++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999877789999999999986 599999999999987
No 95
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=9.1e-45 Score=359.26 Aligned_cols=205 Identities=25% Similarity=0.352 Sum_probs=171.3
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
|+++||+++|++. +++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 46999999999999999999999999999999999987 57899999999998877544 34
Q ss_pred -cCcEEEeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 -SNISIIPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 -~~I~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+.|+||+|++.+|+ .|++||+.+. ...+.++..+. +.++++. -|++.........||||||||++||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEK-VGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 68999999999996 6999999752 12222211111 1122222 355555666678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Iv 551 (597)
++++|+||||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|+++
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998753 68999999999999999999999999986
No 96
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=366.02 Aligned_cols=206 Identities=22% Similarity=0.354 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
-|+++|++++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 4899999999964 569999999999999999999999999999999999985 37999999999864 34556
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---C-CC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---K-YP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~-~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|+.|++|||.++. . .+ ++++.++++.+++.+.+. ........+||||||||+
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK------DKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH------HHHhCCcccCCHHHHHHH
Confidence 789999999999999999999997642 1 11 234555555555533322 123345789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998778899999999999855 99999999999987
No 97
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-45 Score=366.68 Aligned_cols=206 Identities=23% Similarity=0.356 Sum_probs=176.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||+++.. .+...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 3899999999964 56999999999999999999999999999999999985 258999999999875 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|+.|++||+.++. .. . ++++.++++.+++.+++ .+.......+||||||||+
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV------KDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh------hHHhhCCcccCCHHHHHHH
Confidence 789999999999999999999997531 11 1 23445555555554332 2345666789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|+|++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877889999999999985 599999999999987
No 98
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.1e-45 Score=359.24 Aligned_cols=201 Identities=24% Similarity=0.376 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|+++||+++|++. +++|+|+||+|++|+.+||+|+||||||||+++|+|++ |++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 6899999999643 16999999999999999999999999999999999997 578999999999975 456778999
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+||++.+|.+ |++||+.+.. ..+.+ ++.++++.. |++.........||||||||++||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL----------GMEELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCHHHHhhhhhhcCHHHHHHHHHHHH
Confidence 999999999985 9999997521 12222 233333333 45555566778999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999998875 37899999999998865 99999999999975
No 99
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1e-44 Score=358.60 Aligned_cols=201 Identities=21% Similarity=0.343 Sum_probs=171.0
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++||+++|++. +++|+|+||++++|+.+||+||||||||||+++|+|++ |++|+|.+||.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 5789999999643 57999999999999999999999999999999999997 5789999999998764 3567889999
Q ss_pred EeCCCCCC-CccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLF-SGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF-~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+| +.|++||+.+.. ..+.+ ++.++++.. |++.........||||||||++||||++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVL----------GLTDKANKRARTLSGGMKRKLSLAIALI 149 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 99999999 579999997531 22222 233333333 3333334445689999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+.. ||++++|++|++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 212 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC 212 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999999999998778999999999999865 99999999999987
No 100
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-45 Score=356.52 Aligned_cols=199 Identities=28% Similarity=0.445 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+|+|++ .++|+|+||++++| .+||+||||||||||+++|+|++ |++|+|.++|.++.+.+ ..++++++||
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 579999999964 46999999999999 99999999999999999999987 57899999999998776 6788999999
Q ss_pred eCCCCCCCc-cHHhhcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|.+ |++||+.+. ...+ ++++.++++..++.++ .......||||||||++||||+++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR----------AKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH----------HhCchhhCCHHHHHHHHHHHHHhc
Confidence 999999986 999999752 1222 2334555555555433 223446899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+. .||++++|++|++++
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999877899999999999996 499999999999975
No 101
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-44 Score=362.24 Aligned_cols=210 Identities=24% Similarity=0.375 Sum_probs=174.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+ ++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 478999999964 56999999999999999999999999999999999987 478999999999988876554 578999
Q ss_pred EeCCCCCCCc-cHHhhcccCCC-CChHHH-------HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEK-YPDYVL-------WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i-------~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|||++.+|.+ |++||+.++.. .....+ ........+.++++. -|++.........||||||||++|||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLER-VGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHH-cCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999986 99999976321 100000 000011122344443 3666667777889999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999998875 57899999999999965 99999999999987
No 102
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.3e-44 Score=364.13 Aligned_cols=205 Identities=26% Similarity=0.395 Sum_probs=174.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cC-----CceEEEcceeCCCC--ChHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EV-----EGVIKIDDIDTEDV--PLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~-----~G~I~idg~di~~~--~~~~l 412 (597)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ |+ +|+|.+||.++... +...+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999964 46999999999999999999999999999999999987 45 89999999999763 45667
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---C-CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---K-YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~-~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+++|+||||++.+|+.|++||+.+.. . .+. +++.++++..++.+++. .........||||||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK------DRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh------hHhhCCcccCCHHHHHHHH
Confidence 88999999999999999999997531 1 121 23344444444432221 3455667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877789999999999886 499999999999987
No 103
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.3e-44 Score=354.72 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=172.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||++++|+.++|+||||||||||+++|+|+. |++|+|.+||.++... ..++++++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 478999999964 57999999999999999999999999999999999987 5789999999998764 5678899999
Q ss_pred eCCCCCC-CccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+| +.|++||+.+.. ..+++++.++++..++.+.. ......||||||||++||||++++|++
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA----------KKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH----------hhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999888 579999997531 23455666777766665443 334568999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++. .++|+|++||++..+.. ||++++|++|++++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999998875 47899999999999865 99999999999975
No 104
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-44 Score=356.38 Aligned_cols=198 Identities=28% Similarity=0.436 Sum_probs=169.0
Q ss_pred EEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 342 ~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+++||+++|++. +++|+|+||++++|+.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+...++++|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999642 56999999999999999999999999999999999987 5789999999999888888889999999
Q ss_pred eCCC--CCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 420 PQDP--VLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 420 ~Q~~--~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
||++ .+++.|++||+.+.. ..+.. ++.++++.. |++..+......||||||||++|||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELV----------GLEGLRDRSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 9998 467889999997631 12222 222333333 4444455666899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999988754 7899999999999987 99999999985
No 105
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=360.65 Aligned_cols=202 Identities=31% Similarity=0.455 Sum_probs=174.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4899999999964 56999999999999999999999999999999999987 578999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCCCC---ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKY---PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~---~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||++.+|+.|++||+.+.... .++++.+.++.. |++ .........||||||||++||||++++|+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV----------GLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHc----------CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999864211 122333333333 333 23455677999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999998753 7899999999999875 99999999999987
No 106
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=379.49 Aligned_cols=201 Identities=27% Similarity=0.384 Sum_probs=173.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+++.++|+|+||+|++||.+||+||||||||||+++|+|+. |++|+|.+||.++.+.++. ++.|+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 3899999999954567999999999999999999999999999999999997 5789999999999887764 579999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++|||.++. ..+. +++.++++..++.++ .......||||||||+||||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL----------LDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH----------hhCChhhCCHHHHHHHHHHHHHh
Confidence 999999995 69999998742 2232 234455555555443 44455699999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999988765 689999999999775 599999999999987
No 107
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=376.93 Aligned_cols=206 Identities=28% Similarity=0.379 Sum_probs=173.8
Q ss_pred EEEEeeEEEeC--C-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYL--S-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~--~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
|+++||+++|+ + .+++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996 2 357999999999999999999999999999999999997 57899999999998887654 47
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
++|+||||++.+|. .|++||+.++. ..+.++..+. +.+.++. -|++.........||||||||++|||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~-~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR-----VTELLEL-VGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH-cCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999999996 69999997631 2333322211 1222222 2444445556679999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~ 221 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998754 6899999999999875 99999999999997
No 108
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-44 Score=368.38 Aligned_cols=206 Identities=28% Similarity=0.455 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC--hHHHh
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP--LSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~--~~~lr 413 (597)
|+++||+|+|+.. +++|+||||+|++||++||+||||||||||+++|+|+. |.+|+|.+||.++.+.+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999642 46999999999999999999999999999999999987 57899999999998754 45778
Q ss_pred cCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc--hhhhCCCCCCChhHHHHHHHH
Q psy1502 414 SNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN--MTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 414 ~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld--T~vge~G~~LSGGQrQRIaIA 486 (597)
++|+||||+| .+|+.|++|||.++. ..+.++..+.++ +.++. -|++ +........||||||||++||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~-~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVK-----RAMNI-VGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHH-----HHHHH-cCCCchhhccCCcccCCHHHHHHHHHH
Confidence 9999999998 688999999998642 234443322211 11111 2443 445666789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988754 789999999999985 599999999999997
No 109
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2e-44 Score=344.82 Aligned_cols=174 Identities=35% Similarity=0.575 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++|+|+||+|++||.++|+||||||||||+++|+|+++ .+|+|.+||.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 5789999999654 479999999999999999999999999999999999974 689999999998766 6678899999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++.+|+.|++||+ ...||||||||++||||++++|++|||
T Consensus 80 ~~q~~~~~~~tv~~~i-------------------------------------~~~LS~G~~qrv~laral~~~p~~lll 122 (178)
T cd03247 80 LNQRPYLFDTTLRNNL-------------------------------------GRRFSGGERQRLALARILLQDAPIVLL 122 (178)
T ss_pred EccCCeeecccHHHhh-------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998 568999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||++||+.+...+.+.|.++.+++|+|++||++..+..||++++|++|++++
T Consensus 123 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 123 DEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred ECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999998877899999999999999999999999999975
No 110
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.1e-44 Score=358.31 Aligned_cols=206 Identities=28% Similarity=0.376 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr 413 (597)
|+++||+++|++. .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999654 27999999999999999999999999999999999998 578999999999988774 5778
Q ss_pred cCcEEEeCCC--CCC-CccHHhhcccC----C-CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHH
Q psy1502 414 SNISIIPQDP--VLF-SGTLRKNLDPF----E-KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 414 ~~I~~V~Q~~--~LF-~gTI~eNI~~~----~-~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIa 484 (597)
++++|++|++ .++ +.|++||+.++ . ...+++..+++ .+.++. .|+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVG-VGLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHH-CCCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 57999999642 1 11111111111 122222 2453 4567777899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999999998764 789999999999987 599999999999975
No 111
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-44 Score=359.91 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. .+++++||
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEE
Confidence 789999999965 57999999999999999999999999999999999998 578999999999876553 36789999
Q ss_pred eCCCCCCC-ccHHhhcccCCC---C----ChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK---Y----PDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~---~----~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||++.+|. .|++||+.++.. . +.+ ++.++++.. |++.........||||||||++|||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV----------QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc----------CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999996 699999986421 1 111 122222222 4544455666799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+++|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ 217 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 99999999999999999999999999999998754 6899999999998764 99999999999987
No 112
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=365.04 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=177.0
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+++|++ +++|+|+||+|++|+.++|+|+||||||||+++|+|+++ ++|+|.+||.++.. .+..
T Consensus 18 ~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 18 IKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred ceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 46999999999964 569999999999999999999999999999999999874 58999999999875 3456
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
.+|+.|+||+|++.+|++|++||+.++. .. + ++++.++++..++.+++ ..........|||||||
T Consensus 97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV------KDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh------hHHhhCCcccCCHHHHH
Confidence 7889999999999999999999997531 11 1 22344555555543322 22445667899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999877889999999999995 489999999999987
No 113
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-44 Score=368.10 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=174.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
-|+++||+|+|+.++++|+|+||+|++||.+||+|+||||||||+++|+|++ |.+|+|.+||.++. ..+...+|+.|
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 3899999999964567999999999999999999999999999999999997 57899999999984 34456788999
Q ss_pred EEEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||||++ .+|+.|++||+.++. ..+.++ +.++++.. |++........+||||||||++|||
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT----------GIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC----------CChhhhhCCcccCCHHHHHHHHHHH
Confidence 9999998 678999999997631 233332 33333333 4444455667899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||+.+|+||||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988764 789999999999997 599999999999988
No 114
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.1e-44 Score=352.74 Aligned_cols=202 Identities=27% Similarity=0.328 Sum_probs=171.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHH---HhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSK---LRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~---lr~~I 416 (597)
|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++..++... +|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 7899999999545679999999999999999999999999999999999985 7899999999998776543 68899
Q ss_pred EEEeCCCCCC-CccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLF-SGTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF-~gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+| +.|++||+.+. ...+.++ +.++++..+ ++.........||||||||++||||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVG----------LLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcC----------ChhhhhCCchhCCHHHHHHHHHHHH
Confidence 9999999874 67999999763 1233333 233333333 3333444567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++++|++|||||||++||+++...+.+.|.++. ++.|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999874 36899999999999976 89999999999976
No 115
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=363.69 Aligned_cols=206 Identities=28% Similarity=0.349 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC------CceEEEcceeCC--CCChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDIDTE--DVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------~G~I~idg~di~--~~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++++ +|+|.+||.++. +.+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 3899999999964 5699999999999999999999999999999999999743 899999999997 455667
Q ss_pred HhcCcEEEeCCCCCCCc-cHHhhcccCC---CC--Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 412 LRSNISIIPQDPVLFSG-TLRKNLDPFE---KY--PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~g-TI~eNI~~~~---~~--~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
+|++++||||++.+|.+ |++||+.++. .. +. +++.++++..++.+++ ..........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV------KDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch------hhhhccChhhCCHHHHH
Confidence 88999999999999975 9999997531 11 22 2334444444433222 23345667899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998777999999999999865 99999999999987
No 116
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.8e-44 Score=341.23 Aligned_cols=170 Identities=35% Similarity=0.600 Sum_probs=160.3
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++++|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+++...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999643 46999999999999999999999999999999999998 478999999999999988889999999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++.+|++|++||+ ||||||||++||||++++|++|||
T Consensus 81 ~~q~~~~~~~tv~~~l----------------------------------------LS~G~~qrv~la~al~~~p~~lll 120 (173)
T cd03246 81 LPQDDELFSGSIAENI----------------------------------------LSGGQRQRLGLARALYGNPRILVL 120 (173)
T ss_pred ECCCCccccCcHHHHC----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 121 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 121 DEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred ECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999988754 7899999999999999999999999975
No 117
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-44 Score=355.86 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=166.8
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|+++|++++|++. +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 4789999999642 57999999999999999999999999999999999987 578999999998863 46789
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+|. .|++||+.+.. ..+ ++++.++++.. |++.........||||||||++||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrl~la~a 145 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV----------GLSGFENAYPHQLSGGMRQRVALARA 145 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 99999999997 69999997531 122 12233334433 34444445557899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEe--CCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMD--SGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~--~G~Ive 552 (597)
|+++|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|+ +|++++
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999999999999999999998874 3789999999999875 599999999 799987
No 118
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=372.68 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=177.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+.+|. +..+++|+||+|++||.+++.||||||||||+++|+||. |++|+|.+||.|+.+++++ ++.|++
T Consensus 5 ~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~ 81 (352)
T COG3842 5 ALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGM 81 (352)
T ss_pred eEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccce
Confidence 589999999997 567999999999999999999999999999999999998 6889999999999999887 789999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC----CChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK----YPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~----~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|+|+--||. .||+|||.|+-. ..++ ++.++++.+++.+|- ......|||||+||+||||||
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~----------~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA----------DRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh----------hhChhhhChHHHHHHHHHHHh
Confidence 999999995 899999998622 2323 567777777776653 345679999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
..+|++|+||||.||||.+-...++..++++.+ +.|.|+|||+-+.. .-+|||.||++|+|..
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 999999999999999999999999988877654 78999999997776 5689999999999988
No 119
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.5e-44 Score=354.05 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++...+.. +++++||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEE
Confidence 478999999965 57999999999999999999999999999999999997 5789999999999766543 5789999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|. .|++||+.++. ..+.++ +.++++.. |++.........||||||||++||||+++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELL----------QIEHLLDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCHHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999995 69999997631 122222 23333333 44444555667999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 9999999999999999999999999998753 7899999999998875 99999999999986
No 120
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=361.00 Aligned_cols=207 Identities=25% Similarity=0.430 Sum_probs=175.7
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++.+ .+..
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 35899999999964 469999999999999999999999999999999999853 48999999999875 4556
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
.+|+.|+||+|++.+|+.|++||+.++. .. + ++++.++++.+++.+. +..........||||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE------VKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh------hHHHHhcCCCCCCHHHHHH
Confidence 7889999999999999999999997632 11 1 2234444444444322 2234456678999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998778999999999998865 99999999999987
No 121
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-44 Score=360.34 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=174.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++.+++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999964256999999999999999999999999999999999997 4789999999999988888888999999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch--hhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM--TVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT--~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
||++.+|. .|++||+.++. ..+.++. ...+.+.++.+ |++. .......+||||||||++||||++++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l-~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV-GLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc-CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999996 69999997532 1221111 11122333332 4443 456677899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999998753 789999999999875 599999999999987
No 122
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-44 Score=365.53 Aligned_cols=206 Identities=27% Similarity=0.418 Sum_probs=175.2
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~ 411 (597)
|+++||+|+|+.. +++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999632 36999999999999999999999999999999999987 5789999999999764 3457
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaI 485 (597)
+|++||||||+| .+|+.|++|||.++. ..+.++..+.+ .+.++. -|+++ .......+||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~-~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMD-LGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHH-cCCChhhhhCCcccCCHHHHHHHHH
Confidence 889999999997 689899999998742 23433333221 223332 47764 4566788999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999875 3789999999999885 589999999999997
No 123
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.5e-44 Score=340.60 Aligned_cols=206 Identities=27% Similarity=0.425 Sum_probs=175.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~ 415 (597)
-|++++|+++|. ++.||+||||+|++||.++|+||||||||||+++|.|+. |++|+|.++|.|+.+++.+ .+|++
T Consensus 8 ~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 499999999995 457999999999999999999999999999999999987 6899999999999999864 46899
Q ss_pred cEEEeCCCCCCCc-cHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhC-CCCCCChhHHHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE-GGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge-~G~~LSGGQrQRIaIARAl 489 (597)
+|+++|+.-||+. ||+||+.+- .+.+++++++.+. .. + ++-|+...+.+ -...||||++.|.|||||+
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~-~K----L-~~VGL~~~~~~~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL-MK----L-ELVGLRGAAADLYPSELSGGMRKRVALARAI 160 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHH-HH----H-HhcCCChhhhhhCchhhcchHHHHHHHHHHH
Confidence 9999999999975 999999862 2455555544321 00 1 11455555333 2578999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.-||+|+++|||||+|||.+...+-+-|.++.. +.|+|+|||++.++.. |||++++.||+|+-
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence 999999999999999999999988888877654 7899999999999976 79999999999987
No 124
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.1e-44 Score=357.49 Aligned_cols=204 Identities=24% Similarity=0.408 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+... +++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVV 79 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEe
Confidence 689999999964 56999999999999999999999999999999999998 57899999999998776544 4589999
Q ss_pred eCCCCC-CCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVL-FSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+ +..|++||+.+.. ..+.++..+ .+.++++. .|++.........||||||||++||||++++|++
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLAR-LGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999988 4689999997532 222222111 12233333 3666667777889999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++. .++|+|++||+++.+..||+|++|++|++++
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLA 212 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999875 3789999999999998899999999999987
No 125
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-44 Score=357.72 Aligned_cols=202 Identities=31% Similarity=0.402 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH---HHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS---KLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~---~lr 413 (597)
|+++|++++|++. +++|+|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999653 279999999999999999999999999999999999985 789999999999877654 347
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+.|+|+||++.+|. .|++||+.+.. ..+. +++.++++.. |++.........||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrv~l 151 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV----------GLEDKADAYPAQLSGGQKQRVGI 151 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC----------CChhhhhcChhhCCHHHHHHHHH
Confidence 89999999999997 69999997531 1222 2233333333 44444555667999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||++++|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221 (233)
T ss_pred HHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998753 7899999999999865 99999999999987
No 126
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=365.61 Aligned_cols=202 Identities=25% Similarity=0.394 Sum_probs=175.7
Q ss_pred EEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++||+++|++ .+++|+|+||+|++||.+||+||||||||||+++|+|+. |++|+|.+||.++...+...+++.|+|
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence 899999999964 457999999999999999999999999999999999987 578999999999998888788899999
Q ss_pred EeCCC--CCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDP--VLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~--~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|+|++ .+++.|++|||.++. ..+.+ ++.++++..++.+ .+......||||||||++|||||
T Consensus 86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED----------FLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh----------hhhCCcccCCHHHHHHHHHHHHH
Confidence 99998 567889999998641 22332 2444444444443 34445569999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.+|+||||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~ 220 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILE 220 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999998864 689999999999999999999999999987
No 127
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.5e-44 Score=354.85 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---H
Q psy1502 340 KIEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---L 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---l 412 (597)
.|+++||+++|++. .++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 48999999999643 35999999999999999999999999999999999997 57899999999998877643 2
Q ss_pred -hcCcEEEeCCCCCCCc-cHHhhcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 -RSNISIIPQDPVLFSG-TLRKNLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 -r~~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++.++|+||++.+|.+ |++||+.+. ...+ .+++.++++..++.+ .+......||||||||+
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~Ge~qrl 155 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK----------RLDHLPAQLSGGEQQRV 155 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh----------HhhCChhhCCHHHHHHH
Confidence 3689999999999985 999999752 1222 223444444444433 33344568999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+..||++++|++|++++
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999988743 689999999999998999999999999976
No 128
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-44 Score=362.05 Aligned_cols=202 Identities=24% Similarity=0.414 Sum_probs=172.2
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++.. .+..
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 35999999999964 569999999999999999999999999999999999863 68999999999863 4567
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCCC---CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEK---YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
.+|+.|+||||++.+|..|++||+.++.. .. ++++.++++.+++.+ +++.........||||||||++
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD------ECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc------hhhhhhCCCcccCCHHHHHHHH
Confidence 78899999999999999999999986421 11 233444455444432 2334455667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeC
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDS 547 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~ 547 (597)
|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+. .||++++|++
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999999999999999999999877889999999999885 5999999997
No 129
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-44 Score=360.71 Aligned_cols=206 Identities=22% Similarity=0.336 Sum_probs=174.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---c---CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---E---VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~---~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ | .+|+|.+||.++... +...
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 3899999999964 56999999999999999999999999999999999984 3 379999999998653 3456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.++||||++.+|+.|++||+.++. ... ++++.++++.+++.++ +.+........||||||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE------VKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh------HHHHHhcCcccCCHHHHHHH
Confidence 788999999999999999999997531 111 1233444444444322 22345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877799999999999876 599999999999987
No 130
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=365.05 Aligned_cols=206 Identities=23% Similarity=0.361 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----CChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----VPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----~~~~~ 411 (597)
|+++||+|+|+.. +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999632 25999999999999999999999999999999999987 578999999999863 34567
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||+|+| .+|+.|+.||+.++. ..+.+++.+.+ .+.++. -|++ .........||||||||++|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~-~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIA-----AEKLEM-VGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHH-----HHHHHH-cCCChhhccCCcccCCHHHHHHHHH
Confidence 899999999998 799999999998752 23333322111 122221 2443 23456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998875 3789999999999885 599999999999998
No 131
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-44 Score=360.36 Aligned_cols=206 Identities=26% Similarity=0.349 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChHHHh
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~~lr 413 (597)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++.+.+...+|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 3899999999964 569999999999999999999999999999999999874 489999999999888888899
Q ss_pred cCcEEEeCCCCCC-CccHHhhcccCC---CC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 414 SNISIIPQDPVLF-SGTLRKNLDPFE---KY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 414 ~~I~~V~Q~~~LF-~gTI~eNI~~~~---~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+.|+||||++.+| +.|++||+.++. .. . ++++.++++..++.+++ +.........||||||||+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV------KDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch------hhhhcCCcccCCHHHHHHH
Confidence 9999999999755 679999997531 11 1 23345555555543322 1233455678999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+++|+||||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999999877899999999999985 599999999999987
No 132
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.6e-44 Score=350.22 Aligned_cols=203 Identities=25% Similarity=0.371 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC--CChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED--VPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~--~~~~~lr~~I~ 417 (597)
|+++||+++|++ +++|+|+||++++|+++||+||||||||||+++|+|+++ ++|+|.+||.++.. .+...++++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999965 569999999999999999999999999999999999984 78999999999853 34566789999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
||||++.+|. .|++||+.++. ..+.++..+. +.+.++. .|++..+......||||||||++||||++++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEK-VGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHH-cCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 9999999996 69999997631 2232222111 1222322 2555556666789999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|+|
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999998754 6899999999999965 999999999985
No 133
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=361.37 Aligned_cols=206 Identities=22% Similarity=0.359 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.+||+++.. .+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 3899999999964 579999999999999999999999999999999999873 58999999999864 34556
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCCh-----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYPD-----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~-----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.++||+|++.+|+.|++||+.++. ...+ +++.++++..++++. ..........+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE------TKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc------hHHHhccChhhCCHHHHHHH
Confidence 788999999999999999999997531 1111 223333333333211 11234566789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998778999999999999865 99999999999987
No 134
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-44 Score=361.00 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=174.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc---cc---CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL---AE---VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l---~~---~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++|+++.|++ +++|+|+||+|++||.+||+||||||||||+++|+|+ ++ ++|+|.+||.++... +...
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 4899999999964 5699999999999999999999999999999999997 34 379999999998764 3457
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++++|+||||++.+|+.|++||+.++. ... . +++.++++..++.++ +++.....+..||||||||+
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE------VKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc------hhhhhhCCcccCCHHHHHHH
Confidence 788999999999999999999997531 111 1 223334443333222 23445677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999985 599999999999987
No 135
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-44 Score=360.53 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=174.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
-|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 12 ~l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 12 VYQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 4899999999964 469999999999999999999999999999999999863 38999999999864 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC----CChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK----YPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~----~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|++|++||+.++.. .++++ +.++++..++.+++ ..........||||||||+
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV------KDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------hhhhhCCcccCCHHHHHHH
Confidence 7899999999999999999999976421 12222 33334444433222 2345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999986 599999999999987
No 136
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=361.52 Aligned_cols=206 Identities=23% Similarity=0.393 Sum_probs=176.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||++++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 20 ~l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 20 ALSTKDLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred EEEEeeEEEEECC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 5999999999964 679999999999999999999999999999999999873 58999999999864 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|.+|++||+.++. .. + ++++.++++..++.+++ ++..+.....||||||||+
T Consensus 99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i------~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV------KDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh------hhhhcCCcccCCHHHHHHH
Confidence 788999999999999999999997631 11 1 22344445555543332 3445677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+.+...+.+.|.++.++.|+|+|||+++.+. .||+|++|++|++++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999885 599999999999998
No 137
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-44 Score=362.52 Aligned_cols=203 Identities=28% Similarity=0.416 Sum_probs=175.3
Q ss_pred cEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++|++++|+ +++++|+|+||+|++||.++|+||||||||||+++|+|+++ .+|+|.+||.++...+...+|++|+
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 489999999996 35679999999999999999999999999999999999984 7899999999998887788899999
Q ss_pred EEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||||++ .+++.|++||+.++. ..+.++ +.++++.. |++..+.....+||||||||++||||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrl~lara 156 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV----------GMEDYLDKEPQNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc----------CCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 999998 456789999998631 233333 23333333 44444556678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|+++|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||++++|++|++++
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIA 222 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 489999999999998999999999999987
No 138
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.3e-44 Score=352.44 Aligned_cols=193 Identities=32% Similarity=0.417 Sum_probs=162.6
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++. .+|++++|||
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 36899999964 56999999999999999999999999999999999987 57899999998874 4688999999
Q ss_pred CCCCC---CCccHHhhcccCCCC-----------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 421 QDPVL---FSGTLRKNLDPFEKY-----------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 421 Q~~~L---F~gTI~eNI~~~~~~-----------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|++.+ |+.|++||+.+.... .++++.++++..++.+ .......+||||||||++||
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE----------LADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH----------HHhCCcccCCHHHHHHHHHH
Confidence 99987 668999999753210 1223444444444433 33344568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
|||+.+|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|.+
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 99999999999999999999999999999998875 57899999999999865 899999998744
No 139
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=362.42 Aligned_cols=202 Identities=30% Similarity=0.475 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~~I~~ 418 (597)
|+++||+++|++++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.++|.++...+ ...+++.|+|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 689999999965567999999999999999999999999999999999987 57899999999998765 3567889999
Q ss_pred EeCCCC--CCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDPV--LFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~~--LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|||+|. +++.|++|||.++. ..+.++ +.++++.. |++.........||||||||++|||||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI----------GLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC----------CCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 999985 67789999998642 123222 23333332 454455566789999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.+|+||||||||++||+.+...+.+.|+++.. ++|+|++||+++.+..||+|++|++|++++
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~ 215 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL 215 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988753 789999999999998899999999999987
No 140
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.5e-44 Score=355.33 Aligned_cols=203 Identities=27% Similarity=0.401 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++||++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++...+... +++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 478999999974 46999999999999999999999999999999999998 57899999999998877654 4678999
Q ss_pred EeCCCCCCCc-cHHhhcccCC-C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE-K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~-~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||++.+|.+ |++||+.++. . ...++. ..+.+..+++++.........||||||||++||||++++|+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999986 9999997532 1 111111 11222222334445566677999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998764 6899999999999985 99999999999987
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=348.74 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=167.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++. . .|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++...+. .++.++|+
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 5789999999642 2 39999999999999999999999999999999984 78999999999987654 36789999
Q ss_pred eCCCCCCCc-cHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|.+ |++||+.+... .+++++.++++..++.++ .......||||||||++||||+++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL----------EKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH----------HhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999975 99999975321 123345555555555443 333446899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999999999999999999998753 7899999999999965 99999999999975
No 142
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=362.07 Aligned_cols=207 Identities=26% Similarity=0.379 Sum_probs=177.4
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.+||.++.. .+..
T Consensus 24 ~~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 45999999999964 569999999999999999999999999999999999974 48999999999875 3456
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
.+|+.++|+||++.+|++|++||+.++. .. . ++++.++++.+++.+++ .+..+..+..||||||||
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV------KDRLHENAFGLSGGQQQR 176 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH------HHHhhCCcccCCHHHHHH
Confidence 7889999999999999999999997531 11 1 12345555555543332 234567788999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|+|++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877899999999999986 599999999999987
No 143
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=371.63 Aligned_cols=200 Identities=28% Similarity=0.361 Sum_probs=172.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|.+||.++.+.++ .+++|+|
T Consensus 6 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICM 82 (351)
T ss_pred EEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 5899999999964 569999999999999999999999999999999999984 78999999999987765 3689999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. .|++|||.++- ..+.+ ++.++++..++. .........||||||||+||||||+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~----------~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA----------GFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc----------hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999996 59999998742 23333 344444444443 3334456789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. -||+|++|++|+|++
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~ 217 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ 217 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988765 689999999999985 599999999999998
No 144
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=357.46 Aligned_cols=206 Identities=24% Similarity=0.404 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC------CceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+|+|++ +++|+|+||+|++|+.+||+||||||||||+++|+|++++ +|+|.+||.++... +...
T Consensus 4 ~l~~~~l~~~~~~-~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECC-eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4899999999964 5699999999999999999999999999999999999853 59999999998653 4567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.++||||++.+|+.|++||+.+.. ... . +.+.++++..++.++ ++......+.+||||||||+
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE------VKDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh------hhhHhhCCcccCCHHHHHHH
Confidence 889999999999999999999997642 111 1 223333444444332 23445677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 9999999999999999999999999999999999988667999999999999876 79999999999987
No 145
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.7e-44 Score=354.86 Aligned_cols=205 Identities=25% Similarity=0.384 Sum_probs=173.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
|+++||+++|++ +++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+ ++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 478999999964 56999999999999999999999999999999999987 578999999999988776554 568999
Q ss_pred EeCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||++.+|.+ |++||+.++. ....++..+ .+.++++. -|++.........||||||||++||||++.+|+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEE-FHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999986 9999997531 122222111 12233333 366666677788999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999988754 789999999998775 599999999999987
No 146
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=356.99 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=169.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++. .++++++|
T Consensus 12 ~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEE
Confidence 4999999999964 57999999999999999999999999999999999997 57899999998763 46789999
Q ss_pred EeCCCCCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|+|++.+|+ .|++||+.++. ...++++.++++..++ +.........||||||||++|||||+++|++|
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl----------~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGL----------ADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCC----------hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999997 69999998642 2123444555554444 33445566799999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 3689999999999885 599999999999987
No 147
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-44 Score=360.59 Aligned_cols=204 Identities=26% Similarity=0.440 Sum_probs=172.3
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCC--hHHHh
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVP--LSKLR 413 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~--~~~lr 413 (597)
+++||+|+|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.++|.++.+.+ ...+|
T Consensus 7 ~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 6899999996 3579999999999999999999999999999999999863 4899999999987653 34578
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCC---CC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFE---KY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~---~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+.++||||++.+|++|++||+.++. +. . ++++.++++..++.++ +.+.++..+..||||||||++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~Gq~qrv~ 159 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE------LGDRLKDSAFELSGGQQQRLC 159 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch------hhhHhhcChhhCCHHHHHHHH
Confidence 8999999999999999999997531 11 1 1223344444443221 123456677899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 160 IARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988778999999999999865 99999999999987
No 148
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-44 Score=360.31 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=173.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCC--hHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVP--LSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~--~~~ 411 (597)
.|+++|+++.|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++...+ ...
T Consensus 12 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYGE-KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 5999999999964 569999999999999999999999999999999999874 5899999999986532 446
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+|+.++||||++.+|+.|++||+.+.. ..+.+ ++.++++.+++.++ .+.........||||||||++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE------TSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc------hhhhhcCChhhCCHHHHHHHH
Confidence 788999999999999999999997531 22322 23344444433221 123345567799999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|+|||++..+.. ||+|++|++|++++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988778999999999999865 99999999999987
No 149
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=357.83 Aligned_cols=207 Identities=24% Similarity=0.378 Sum_probs=175.1
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~ 410 (597)
+.|+++|++++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++... +..
T Consensus 3 ~~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 45899999999964 569999999999999999999999999999999999863 379999999998653 445
Q ss_pred HHhcCcEEEeCCCCCCC-ccHHhhcccCC---C-CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 411 KLRSNISIIPQDPVLFS-GTLRKNLDPFE---K-YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~-~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
.+|+.|+||||++.+|. .|++||+.++. . .+. +++.++++..++.+++. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK------DRLKSNAMELSGGQQQ 155 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh------HHhhCCcCcCCHHHHH
Confidence 67889999999999998 69999997531 1 121 23444444544433322 2344567899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|+|++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887899999999999985 599999999999987
No 150
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=363.35 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----CChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----VPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----~~~~~ 411 (597)
|+++||+|+|+.. .++|+||||+|++||.+||+||||||||||+++|+|+. |++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 46999999999999999999999999999999999987 578999999999864 34567
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||||+| .+|+.|++|||.++. ..+.++..+.+ .+.++. -|++ .........||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~-~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKA-----REMIEL-VGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-CCCChhhhhCCcccCCHHHHHHHHH
Confidence 788999999998 688999999998642 23433332211 122222 2443 22355677999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988753 789999999999985 599999999999987
No 151
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.9e-43 Score=357.04 Aligned_cols=199 Identities=29% Similarity=0.403 Sum_probs=179.2
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.+.|+++|+++. .+++|+|+||+|++|+++||+|+||||||||+++|+|+++ .+|+|.+|| .|
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 456999999995 3569999999999999999999999999999999999985 689999988 39
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++|++.+|++|++||+.++....+.++.++++.+++.+++..+ .+++|.+++.+..||||||||++|||||+++|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875444445667777888888888887 8899999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHH-HHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTI-RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.+ ..+..+.|+|+|||++..+..||++++|++|++++
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~ 238 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999888754 55656899999999999999999999999999987
No 152
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=361.21 Aligned_cols=206 Identities=22% Similarity=0.409 Sum_probs=173.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.++|.++.. .+...
T Consensus 21 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeCC-ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 4899999999964 56999999999999999999999999999999999974 368999999999865 34456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++++|+||+|++.+|++|++||+.++. .. . ++.+.++++..++.+ ++.........+||||||||+
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD------EVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc------chHHHHhcCcccCCHHHHHHH
Confidence 788999999999999999999997531 11 1 122333333333321 112345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877789999999999876 599999999999987
No 153
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=351.11 Aligned_cols=200 Identities=25% Similarity=0.317 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|++ |++|+|.++|.++... ...++++++||
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 578999999964 56999999999999999999999999999999999987 5789999999998753 35678899999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|.+ |++||+.+.. ..+ ++++.++++..++.++ .......||||||||++||||++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA----------ADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH----------hhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999874 9999997521 122 2234445555544433 233346899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999988754 6899999999999875 99999999999987
No 154
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-44 Score=349.47 Aligned_cols=201 Identities=21% Similarity=0.362 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++++|+.+||+||||||||||+++|+|++ |++|+|.+||.++.. .++++++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 478999999964 56999999999999999999999999999999999997 578999999998753 567899999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+|.+ |++||+.+.. ..+..+.. ..+.++++. .|++........+||||||||++||||++.+|++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLER-LELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHH-cCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999975 9999997531 12211111 112233333 2555556667789999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|+++. +++|+|++||++..+.. ||++++|++|++++
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999999999998875 36899999999999865 99999999999975
No 155
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=356.00 Aligned_cols=206 Identities=22% Similarity=0.381 Sum_probs=176.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCC-CCChHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTE-DVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~-~~~~~~l 412 (597)
.++++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|.+||.++. ..+...+
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4889999999964 579999999999999999999999999999999999875 3799999999986 4566778
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|+.++||||++.+|..|++||+.++. ... + +++.++++.+++.+. +.+........||||||||++
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE------VKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh------hhHHhhcCcccCCHHHHHHHH
Confidence 89999999999999999999997631 111 1 223344444444332 224456667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+.. ||++++|++|+|++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998778999999999999876 99999999999987
No 156
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=361.09 Aligned_cols=202 Identities=23% Similarity=0.330 Sum_probs=174.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++..++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++...+...+++.++||
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 789999999965556999999999999999999999999999999999987 5789999999999887777889999999
Q ss_pred eCCC--CCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 420 PQDP--VLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 420 ~Q~~--~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+|++ .+|+.|++||+.++. ..+.+ .+.++++..++.+ ........||||||||++|||||+
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE----------LRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh----------HhcCCcccCCHHHHHHHHHHHHHH
Confidence 9997 478899999997532 23333 2344444444433 334445799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 99999999999999999999999999988764 689999999999985 699999999999987
No 157
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=357.44 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+++|+|+.+ ++|+|.+||.++... +...
T Consensus 6 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGE-KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECC-eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 3899999999964 569999999999999999999999999999999999852 279999999999876 4566
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---C-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---Y-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
.++.|+|++|++.+|++|++||+.++.. . + ++++.++++.+++.+ ++.+..+..+..||||||||+
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD------EVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch------hhHHHhhcChhhCCHHHHHHH
Confidence 7889999999999999999999986421 1 1 112333444333322 334456777889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++.+|+++||||||++||+++...+.+.|.++.+++|+|++||++..+. .||++++|++|++++
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877799999999999996 599999999999987
No 158
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-43 Score=373.01 Aligned_cols=204 Identities=22% Similarity=0.325 Sum_probs=173.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. |++|+|.+||.++.+.++. ++.|+|
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 3899999999964 56999999999999999999999999999999999997 5789999999999877654 688999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+|++.+|. .|++||+.++. ..+..+..+ .+.+.++. -|++.........||||||||+||||||+++|+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~-l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE-----RVAELLDL-VGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999996 79999998742 223222211 11222222 245555566778999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. -||+|++|++|++++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~ 215 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ 215 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988755 689999999999875 599999999999997
No 159
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.2e-44 Score=374.36 Aligned_cols=190 Identities=28% Similarity=0.352 Sum_probs=165.6
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----hcCcEEEeCCCCCCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL----RSNISIIPQDPVLFS 427 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l----r~~I~~V~Q~~~LF~ 427 (597)
++.+|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.|+...+...+ |++|+||+|++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 456999999999999999999999999999999999998 578999999999999998887 789999999999997
Q ss_pred -ccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 428 -GTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 428 -gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
.|++|||.++. ..+. +++.++++.+ |++........+||||||||++|||||+++|+|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 59999998642 2232 2334444444 4444566677799999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
||||+||+.+...+++.+.++.+ ++|+|+|||+++.+ +.||+|++|++|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999988743 79999999999986 5599999999999997
No 160
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=357.34 Aligned_cols=201 Identities=23% Similarity=0.361 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++++|+.++|+|+||||||||+++|+|++ |++|+|.++|.++...+...+++.++||
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999964 57999999999999999999999999999999999997 5789999999999888888888899999
Q ss_pred eCCCCCCCc-cHHhhcccCC-C-------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE-K-------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~-~-------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||++.+|.+ |++||+.++. . .. ++++.++++..+ ++.........||||||||++|||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR----------INHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcC----------CHHHHcCCcccCCHHHHHHHHHHH
Confidence 999999876 9999997641 1 01 122334444333 433445567799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999988753 789999999999986 599999999999987
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.8e-43 Score=359.49 Aligned_cols=206 Identities=25% Similarity=0.375 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCC--------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLS--------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
|+++||+|+|+. ++++|+|+||+|++||.+||+||||||||||+++|+|++ |.+|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 789999999953 357999999999999999999999999999999999998 57899999999998876543
Q ss_pred ---HhcCcEEEeCCCC--CC-CccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHH
Q psy1502 412 ---LRSNISIIPQDPV--LF-SGTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 ---lr~~I~~V~Q~~~--LF-~gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQr 480 (597)
+|+.|+||||++. ++ ..|++||+.+. .....++. ...+.+.++. .|++ .........||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~-~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDM-VGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHH-cCCChhhhhCChhhCCHHHH
Confidence 6788999999983 44 47999998532 11121111 1111223322 2454 345667789999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||++..+. .||++++|++|++++
T Consensus 157 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999998764 789999999999997 499999999999988
No 162
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.8e-43 Score=356.97 Aligned_cols=205 Identities=24% Similarity=0.373 Sum_probs=172.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-----------
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----------- 408 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----------- 408 (597)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 579999999964 57999999999999999999999999999999999987 57899999999997653
Q ss_pred --hHHHhcCcEEEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 409 --LSKLRSNISIIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 409 --~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
...+|+.++||+|++.+|. .|++||+.++. ....++..+ .+.+.++. -|++.........|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDM-VGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCChhHhhcChhhcCHHHHH
Confidence 2467889999999999985 79999997631 122222111 12233333 25555566677899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||++++|++|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998754 789999999999985 599999999999987
No 163
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.9e-43 Score=350.81 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++..++...+++.++|
T Consensus 7 ~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 4899999999964 56999999999999999999999999999999999997 578999999999998888888999999
Q ss_pred EeCCCCCCCccHHhhcccCC---CC--ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE---KY--PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~---~~--~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+|++.+|+.|++||+.+.. .. .++++. +.++. -|+. +........||||||||++|||||+++
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL---------DDLER-FALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHH---------HHHHH-cCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999997531 11 111222 23322 2453 456677889999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEe--CCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMD--SGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~--~G~Ive 552 (597)
|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||++++|+ +|+|.|
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQE 219 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhh
Confidence 999999999999999999999999998753 789999999999999999999996 566543
No 164
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=359.28 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||+|++|+.+||+||||||||||+++|+|+++ ++|+|.+||.++.+.+...+++.++|
T Consensus 11 ~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 4899999999964 579999999999999999999999999999999999985 78999999999988888888999999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC-----------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK-----------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~-----------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++.+|. .|++||+.+... ..++++.++++.+++.++ .......||||||||++||
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL----------AHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH----------hcCCcccCCHHHHHHHHHH
Confidence 999987765 499999975310 112335555555555433 2333458999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999998753 789999999999986 599999999999987
No 165
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-43 Score=362.39 Aligned_cols=206 Identities=21% Similarity=0.280 Sum_probs=171.1
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC---------
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED--------- 406 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~--------- 406 (597)
|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 8899999999643 25999999999999999999999999999999999987 578999999987632
Q ss_pred ---------------CChHHHhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-
Q psy1502 407 ---------------VPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN- 465 (597)
Q Consensus 407 ---------------~~~~~lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld- 465 (597)
.+...+|+.||||||+| .+|..|++|||.++. ..+.+++.+.+ .+.++. -|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~-~gL~~ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRA-----AKYIEL-VGLDE 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHH-cCCCh
Confidence 13456889999999986 688999999998752 23443332211 122221 2443
Q ss_pred hhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH-hhcCEEE
Q psy1502 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI-MDSDKVL 543 (597)
Q Consensus 466 T~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti-~~~D~Ii 543 (597)
.........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+ ..||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 345667789999999999999999999999999999999999999999999988753 78999999999987 4699999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+|++
T Consensus 237 vl~~G~i~~ 245 (305)
T PRK13651 237 FFKDGKIIK 245 (305)
T ss_pred EEECCEEEE
Confidence 999999987
No 166
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=359.78 Aligned_cols=203 Identities=26% Similarity=0.384 Sum_probs=173.7
Q ss_pred cEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++|++++|++. +++|+|+||+|++||.+||+||||||||||+++|+|++ |.+|+|.+||.++.+.+...++++|+
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999643 46999999999999999999999999999999999998 47899999999998888888999999
Q ss_pred EEeCCCC--CCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDPV--LFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~~--LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+|++. ++..|+++|+.++. ..+.+ ++.++++..+ +..........||||||||++||||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrl~lara 156 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVD----------MLERADYEPNALSGGQKQRVAIAGV 156 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcC----------CchhhhCCcccCCHHHHHHHHHHHH
Confidence 9999984 45678999997642 12222 2333333333 3333445567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~ 222 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYK 222 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 689999999999998899999999999987
No 167
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-44 Score=362.03 Aligned_cols=200 Identities=26% Similarity=0.299 Sum_probs=168.1
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----hcCc
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL----RSNI 416 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l----r~~I 416 (597)
.++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4678888885 356999999999999999999999999999999999998 478999999999988775543 4689
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+|. .|++||+.+.. ..+ ++++.++++..++.+ .+......||||||||++||||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~Gq~qrv~lAra 174 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG----------WEHKYPDELSGGMQQRVGLARA 174 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh----------HhhCCcccCCHHHHHHHHHHHH
Confidence 99999999995 69999997531 122 223444444444433 3344456899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|+++|+||||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 175 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 175 LAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999988753 689999999999875 599999999999987
No 168
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.5e-43 Score=352.77 Aligned_cols=210 Identities=20% Similarity=0.319 Sum_probs=174.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++|++++|++ +++|+|+||+|++|+.++|+|+||||||||+++|+|++ |++|+|.+||.++...+... .++.++|
T Consensus 3 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 789999999964 56999999999999999999999999999999999987 57899999999998877654 3567999
Q ss_pred EeCCCCCCCc-cHHhhcccCCCCChH---HH---HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEKYPDY---VL---WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~~~~e---~i---~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||++.+|.+ |++||+.++...... .+ ........+.++++. -|++.........||||||||++||||+++
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLET-IGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHH-cCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999986 999999763211000 00 000011112233333 356666677778999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+++...+.+.|+++.+++|+|++||+++.+.+ ||+|++|++|++++
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA 222 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence 99999999999999999999999999998778999999999999975 99999999999987
No 169
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=356.20 Aligned_cols=206 Identities=25% Similarity=0.422 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
-|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.+||.++... +...
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGE-KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCC-ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 3899999999964 579999999999999999999999999999999999874 589999999998753 3456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.++|+||++.+|+.|++||+.++. .. . ++++.++++..++++.+ +.........||||||||+
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV------KSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh------HHHHhCChhhcCHHHHHHH
Confidence 788999999999999999999997531 11 1 12234444444443222 2345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|+||||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999875 599999999999987
No 170
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.2e-43 Score=351.11 Aligned_cols=205 Identities=21% Similarity=0.344 Sum_probs=172.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC--ChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV--PLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~--~~~~lr~~I~ 417 (597)
|+++|++++|++ +++|+|+||++++||++||+|+||||||||+++|+|++ |++|+|.+||.++... +...++++++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 689999999964 56999999999999999999999999999999999998 4789999999999864 3456788999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+||++.+|. .|++||+.++. ..+..+..+ .+.+.++. .|++.........||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAK-VGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHH-cCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 69999997632 122222111 11233332 3566666667789999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999988753 7899999999999965 99999999999987
No 171
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=353.63 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC------CCChHHHh
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE------DVPLSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~------~~~~~~lr 413 (597)
|+++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|++ |++|+|.+||.++. ..+...+|
T Consensus 3 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 789999999964 57999999999999999999999999999999999998 47899999999873 22345678
Q ss_pred cCcEEEeCCCCCCCc-cHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 SNISIIPQDPVLFSG-TLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~g-TI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
++|+|+||++.+|.+ |++||+... ...+.++..+ .+.++++. -|++..+......||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLER-LRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 899999999999974 999999642 1122222111 12233333 356666666778999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++++|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||++++|++|++++
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 7999999999999965 99999999999987
No 172
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-43 Score=356.36 Aligned_cols=206 Identities=25% Similarity=0.394 Sum_probs=176.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 10 ~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 4899999999964 469999999999999999999999999999999999863 57999999999853 45567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---C---ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---Y---PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~---~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
++++|+||+|++.+|+.|++||+.++.. . .++++.++++.+++.+++. ......+.+||||||||++|
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK------DKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH------HHhcCCcccCCHHHHHHHHH
Confidence 7889999999999999999999976421 1 1234555566666654443 23456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe---------CCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD---------SGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~---------~G~Ive 552 (597)
||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999877889999999999886 589999999 799988
No 173
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-43 Score=359.44 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=173.1
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~ 411 (597)
|+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999642 46999999999999999999999999999999999997 5789999999998764 3467
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||||++ .+|+.|++||+.+.. ..+.++..+.+ .++++. .|++ .........||||||||++|
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLAL-VGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCCChhhhhCCcccCCHHHHHHHHH
Confidence 888999999998 688999999997632 23333332211 122222 3554 24466678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988754 789999999999886 499999999999987
No 174
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.9e-43 Score=352.85 Aligned_cols=205 Identities=25% Similarity=0.406 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC--------hHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP--------LSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~--------~~~ 411 (597)
++++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ ...
T Consensus 4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 899999999964 46999999999999999999999999999999999998 47899999999987542 346
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
+|++++||||++.+|. .|++||+.++ .....++..+. +.+.++. .|++.........||||||||++||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAK-VGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-cCCcchhhCChhhCChHHHHHHHHH
Confidence 7889999999999986 6999999753 12222222111 1233333 2555555667889999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999988754 7899999999999965 99999999999987
No 175
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=352.32 Aligned_cols=205 Identities=25% Similarity=0.383 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+... +|+.++|
T Consensus 4 l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 789999999964 57999999999999999999999999999999999987 57899999999998877644 5788999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|||++.+|. .|++||+.+... .+.++. ...+.++++.+ |++.........||||||||++||||++++|
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF-HIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc-CCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998 599999976421 222211 11223444433 6666667778899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++.+ ++|+|++||++..+. .||++++|++|++++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 99999999999999999999999987653 789999999998775 599999999999987
No 176
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.3e-43 Score=369.77 Aligned_cols=199 Identities=24% Similarity=0.329 Sum_probs=170.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+. .++.|+||
T Consensus 3 L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEE
Confidence 789999999964 56999999999999999999999999999999999998 578999999999987654 46789999
Q ss_pred eCCCCCCC-ccHHhhcccCCC-------CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK-------YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~-------~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+|++.+|. .|++||+.++.. .+. +++.++++..++ +.........||||||||++|||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L----------~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL----------AHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCC----------chhhhCChhhCCHHHHHHHHHHH
Confidence 99999997 599999986421 222 233344444433 33344556799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+++|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998765 6899999999998765 99999999999998
No 177
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-43 Score=351.38 Aligned_cols=207 Identities=21% Similarity=0.324 Sum_probs=171.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~ 417 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++...+... +++.++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 3899999999964 57999999999999999999999999999999999998 47899999999998887654 678899
Q ss_pred EEeCCCCCCCc-cHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||+|++.+|.+ |++||+.+... .+.++..+.+ .+.+..+.+++.........||||||||++||||++++|+|
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i 158 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999985 99999976421 2222222211 12222222222223445678999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (237)
T PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL 217 (237)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe
Confidence 99999999999999999999998875 4799999999999764 599999999999987
No 178
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3e-43 Score=373.98 Aligned_cols=202 Identities=22% Similarity=0.348 Sum_probs=177.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|++ |.+|+|.++|.++.+++...++++|+|
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 3899999999964 67999999999999999999999999999999999987 578999999999999998899999999
Q ss_pred EeCCCCC-CCccHHhhcccCCC-----------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVL-FSGTLRKNLDPFEK-----------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~~~-----------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|+|++.+ |+.|++||+.++.. .+++.+.++++..++.++. ......||||||||++||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~----------~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA----------DRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh----------cCChhhCCHHHHHHHHHH
Confidence 9999987 67899999976421 1233466666666665443 234568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|+||||||||++||+.+...+++.|+++. .++|+|+++|+++.+. .|||+++|++|++++
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999886 4789999999999995 599999999999987
No 179
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-43 Score=357.64 Aligned_cols=203 Identities=29% Similarity=0.367 Sum_probs=175.4
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
-|+++||+++|++ .+++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++...+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 3899999999964 2469999999999999999999999999999999999984 789999999999887777889999
Q ss_pred EEEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||+|++ .+++.|+.|||.++. ..+.++ +.++++.+++.+ ........||||||||++|||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~qrv~lAr 153 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD----------FKTREPARLSGGQKQRVAVAG 153 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh----------HhhCCcccCCHHHHHHHHHHH
Confidence 9999998 477899999998631 233333 334444444433 334456789999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+++|+||||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++
T Consensus 154 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 154 IIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIK 220 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998864 789999999999998999999999999988
No 180
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-43 Score=356.07 Aligned_cols=206 Identities=25% Similarity=0.407 Sum_probs=174.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.++++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 24 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 24 VFDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 4999999999964 469999999999999999999999999999999999863 68999999999854 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCChHH-----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDYV-----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e~-----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++++++|+||++.+|..|++||+.++. ..++++ +.++++..++. +++.......+..||||||||+
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW------DELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc------chHHHHHhcCcccCCHHHHHHH
Confidence 788999999999999999999997531 222221 22222222221 2344556677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998778999999999999865 99999999999987
No 181
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=359.77 Aligned_cols=203 Identities=24% Similarity=0.363 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCC---ceEEEcceeCCCCChHHHhc
Q psy1502 340 KIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVE---GVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~---G~I~idg~di~~~~~~~lr~ 414 (597)
.|+++|++|+|++ ..++|+|+||+|++||.+||+||||||||||+++|+|++ |++ |+|.+||.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 4899999999964 346999999999999999999999999999999999998 455 99999999998877778889
Q ss_pred CcEEEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 415 NISIIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 415 ~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+|+||||++ .+++.|++|||.++. ..+.++ +.++++..++ +........+||||||||++|
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L----------~~~~~~~~~~LS~G~~qrv~l 154 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM----------LDYIDSEPANLSGGQKQRVAI 154 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC----------hhHhcCCcccCCHHHHHHHHH
Confidence 999999998 467899999998641 233333 3444444444 334455567999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLA 223 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988754 689999999999999999999999999998
No 182
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=356.02 Aligned_cols=206 Identities=21% Similarity=0.347 Sum_probs=173.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 3899999999974 579999999999999999999999999999999999853 38999999999864 34456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccC---CCCC-----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPF---EKYP-----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~---~~~~-----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.++||||++.+|+.|+++|+.+. .... ++++.++++.+++.+ ++..........||||||||+
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD------EVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc------chhhHHhcCcccCCHHHHHHH
Confidence 78899999999999999999999753 1111 122333344443322 223445666789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+.+...+.+.|.++.++.|+|+|||+++.+. .||+|++|++|++++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877789999999999986 499999999999987
No 183
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=354.25 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=174.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++|++++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.+||.++... +...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 3899999999964 569999999999999999999999999999999999863 579999999999653 3456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.++||||++.+|+.|++||+.++. .. +. +++.++++.+++.+. +..........||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE------VKDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh------hhhHhhCCcccCCHHHHHHH
Confidence 788999999999999999999998642 11 11 233445555444322 22335566789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||++++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999988778999999999999865 99999999999987
No 184
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-43 Score=356.91 Aligned_cols=207 Identities=22% Similarity=0.335 Sum_probs=175.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCC-hHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVP-LSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~-~~~l 412 (597)
.++++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+||.++.+.+ ...+
T Consensus 21 ~l~i~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 21 AMAAVNLTLGFAG-KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEEEeeEEEEECC-EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 4899999999964 579999999999999999999999999999999999974 4899999999998763 4567
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhc---CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEG---AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++|+||||++.+|+.|++||+.++. ..++++..+.+ .+.++.+ ..+++.+......||||||||++|
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 89999999999999999999997631 13444433221 1122221 122345667788999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||++++|++|+|++
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999988777899999999999865 99999999999987
No 185
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=372.40 Aligned_cols=200 Identities=23% Similarity=0.325 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++|+|
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 3899999999964 56999999999999999999999999999999999997 578999999999987665 3578999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++||+.++. ..+.+ ++.++++.. |++.........||||||||++|||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~l----------gL~~~~~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL----------QLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc----------CChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998642 22322 233444433 3443444556789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 789999999999876 599999999999987
No 186
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-43 Score=356.09 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=176.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+||+++.. .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEECC-eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 5899999999964 569999999999999999999999999999999999874 37999999999864 44567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC----CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE----KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~----~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.|+||||++.+|+.|++||+.++. ..+ ++.+.++++.+++.+++. ......+..||||||||+
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LS~G~~qrv 159 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK------DKLNKSALGLSGGQQQRL 159 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh------hHhcCCcccCCHHHHHHH
Confidence 888999999999999999999997531 112 223455566666544432 234456779999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe-----CCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD-----SGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~-----~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 160 CIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 9999999999999999999999999999999999998778999999999999865 89999998 599988
No 187
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-43 Score=361.10 Aligned_cols=209 Identities=22% Similarity=0.332 Sum_probs=172.7
Q ss_pred cccEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----C-
Q psy1502 338 LGKIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----V- 407 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----~- 407 (597)
.+.|+++|++++|++. .++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 3569999999999653 25999999999999999999999999999999999998 578999999999853 2
Q ss_pred ChHHHhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHH
Q psy1502 408 PLSKLRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQ 481 (597)
+...+|++|+||+|++ .+|+.|++||+.++. ..+.++..+.+ .+.++. .|+. .........|||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~-~~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKL-VQLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCCChhHhcCChhhCCHHHHH
Confidence 3567888999999998 578889999997632 22333322211 122222 2442 3455667899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988753 789999999999875 599999999999987
No 188
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4e-43 Score=355.46 Aligned_cols=207 Identities=22% Similarity=0.318 Sum_probs=172.0
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCC----------
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV---------- 407 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~---------- 407 (597)
+.|+++||++.|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++ ++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 35999999999964 569999999999999999999999999999999999984 789999999998642
Q ss_pred ---ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCCCChh
Q psy1502 408 ---PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTNFSVG 478 (597)
Q Consensus 408 ---~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~LSGG 478 (597)
....+++.++||||++.+|. .|++||+.++. ....++..+ .+.++++. .|+.... ......||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAK-VGIDERAQGKYPVHLSGG 156 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHH-cCCChhhhhCCcccCCHH
Confidence 13467889999999999997 59999997521 122221111 11222222 2444433 5567899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++|||||+++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988754 7999999999999986 99999999999997
No 189
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=359.46 Aligned_cols=206 Identities=26% Similarity=0.414 Sum_probs=174.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.+ .+...
T Consensus 39 ~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 117 (285)
T PRK14254 39 VIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117 (285)
T ss_pred eEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence 4899999999964 569999999999999999999999999999999999873 58999999999865 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++.++||||++.+|..|++||+.+.. ... ++++.++++..++.+.+ ...+......||||||||++|
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i------~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV------KDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh------HHHHhCCcccCCHHHHHHHHH
Confidence 889999999999999999999997531 111 23445555555443222 123456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE-EEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL-VMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii-vl~~G~Ive 552 (597)
||||+++|+||||||||++||+++...+.+.|+++.+++|+|++||++..+.. ||+++ +|++|+|++
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999998777899999999999875 99975 579999987
No 190
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-43 Score=352.78 Aligned_cols=205 Identities=24% Similarity=0.387 Sum_probs=176.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---c---CCceEEEcceeCCCC--ChHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---E---VEGVIKIDDIDTEDV--PLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~---~~G~I~idg~di~~~--~~~~l 412 (597)
++++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+. | ++|+|.+||.++... +...+
T Consensus 4 l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 4 IEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 789999999964 56999999999999999999999999999999999974 3 689999999998753 45678
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---CC-Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---KY-PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
++.++||||++.+|+.|++||+.++. .. +. +++.++++.+++.+++.. .+...+..||||||||++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~------~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD------KLDKSALGLSGGQQQRLC 156 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH------HHhCCcccCCHHHHHHHH
Confidence 89999999999999999999997531 11 22 235556666666555432 245567899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++++|++|||||||++||+.+...+.+.|.++.+++|+|++||++..+.. ||++++|++|++++
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999998778999999999998876 89999999999987
No 191
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.3e-42 Score=362.35 Aligned_cols=207 Identities=26% Similarity=0.352 Sum_probs=172.3
Q ss_pred cEEEEeeEEEeCC------------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC
Q psy1502 340 KIEFQNTNVRYLS------------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED 406 (597)
Q Consensus 340 ~I~f~nVsf~Y~~------------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~ 406 (597)
-|+++|++++|+. ..++++|+||+|++||++||||+||||||||+++|+|++ |++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 3899999999952 246999999999999999999999999999999999998 478999999999998
Q ss_pred CChHH---HhcCcEEEeCCC--CCC-CccHHhhcccC-----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCC
Q psy1502 407 VPLSK---LRSNISIIPQDP--VLF-SGTLRKNLDPF-----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTN 474 (597)
Q Consensus 407 ~~~~~---lr~~I~~V~Q~~--~LF-~gTI~eNI~~~-----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~ 474 (597)
.+... +|++|+||+|+| .|| ..||.|||.+. ...+.++..+.++ +.++. -|++ .........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~-----~~l~~-vgl~~~~~~~~p~~ 161 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK-----AMMLK-VGLLPNLINRYPHE 161 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHH-cCCChHHhcCCccc
Confidence 87544 678999999998 477 47999998631 1234444332221 22222 2332 234556779
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
||||||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 7899999999999975 9999999999999
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
|
T Consensus 242 e 242 (331)
T PRK15079 242 E 242 (331)
T ss_pred E
Confidence 8
No 192
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-43 Score=354.61 Aligned_cols=208 Identities=26% Similarity=0.351 Sum_probs=178.1
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC----C
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED----V 407 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~----~ 407 (597)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ ++|+|.+||.++.. .
T Consensus 14 ~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 456999999999964 479999999999999999999999999999999999863 58999999988752 3
Q ss_pred ChHHHhcCcEEEeCCCCCCCccHHhhcccCC---CC-----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 408 PLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
+...+++.|+|+||++.+|.+|++||+.++. .. .++++.++++.+++.+ ++.+..+.....|||||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD------EVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch------hhhHHHhCCcccCCHHH
Confidence 4457788999999999999999999997531 11 1244555555554432 33345667788999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||++||||++++|++|||||||++||+++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999877889999999999996 599999999999987
No 193
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=351.54 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|++ |.+|+|.+||.++...+...++++++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 789999999964 56999999999999999999999999999999999987 5789999999999888888888899999
Q ss_pred eCCCCC-CCccHHhhcccCCC---CC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc-
Q psy1502 420 PQDPVL-FSGTLRKNLDPFEK---YP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~~---~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll- 490 (597)
||++.+ ++.|++||+.++.. .+ ++++.++++.. |++.........||||||||++|||||+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV----------DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc----------CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999987 67899999976421 11 12233334333 3443445566799999999999999999
Q ss_pred -----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 -----RNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 -----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 5999999999999999999999999999875 4789999999999986 599999999999987
No 194
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-43 Score=352.47 Aligned_cols=209 Identities=23% Similarity=0.336 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~ 417 (597)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+ +..++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 3899999999964 57999999999999999999999999999999999997 578999999999988876555 45699
Q ss_pred EEeCCCCCCCc-cHHhhcccCCC-CCh--------------HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEK-YPD--------------YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~-~~~--------------e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
||||++.+|.+ |++||+.++.. ..+ .+-.++ ...+.++++. -|++........+|||||||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLER-VGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHh-CChhhhhhCChhhCCHHHHH
Confidence 99999999985 99999986421 000 000011 1112233333 36666777888899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++||||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 99999999999999999999999999999999999988754 6899999999999865 99999999999987
No 195
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-43 Score=356.50 Aligned_cols=201 Identities=25% Similarity=0.336 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I~ 417 (597)
|+++||+++|++ +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||.++. +.+...+|++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999964 56999999999999999999999999999999999987 57899999999985 334567788999
Q ss_pred EEeCCCC--CCCccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDPV--LFSGTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~~--LF~gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||||++. +|..|+.+|+.++ ...+.++ +.++++..++.+ ........||||||||++||||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH----------FRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh----------HhcCCchhCCHHHHHHHHHHHH
Confidence 9999985 6778999999753 1223322 233333333332 2334567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||++..+. .||++++|++|++++
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~ 216 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998875 4789999999999985 499999999999987
No 196
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.1e-43 Score=343.38 Aligned_cols=197 Identities=26% Similarity=0.378 Sum_probs=167.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|+. +++|+||++++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+ .+++.++||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 368999999962 578999999999999999999999999999999987 57899999999987644 467889999
Q ss_pred eCCCCCCC-ccHHhhcccC-C-C-----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPF-E-K-----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~-~-~-----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|. .|++||+.+. . . .+++++.++++..++.+. .......||||||||++||||+++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY----------LDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHH----------hhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999997 4999999752 1 1 122345555665555443 333345899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++||||||++||+++...+.+.|.++.+ ++|+|+|||++..+.. ||++++|++|++++
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999998753 6899999999999865 99999999999987
No 197
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-43 Score=358.33 Aligned_cols=203 Identities=25% Similarity=0.385 Sum_probs=173.6
Q ss_pred cEEEEeeEEEeCC-----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC-hHHH
Q psy1502 340 KIEFQNTNVRYLS-----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP-LSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~-~~~l 412 (597)
-|+++|++++|++ .+++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 3899999999963 2469999999999999999999999999999999999985 7899999999997654 3567
Q ss_pred hcCcEEEeCCC--CCCCccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDP--VLFSGTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|++++||||+| .+|..|+.+|+.++. ..+. +++.++++.+++.+ ........||||||||+
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~LS~G~~qrv 153 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE----------YRRHAPHLLSGGQKQRV 153 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh----------HhhCCcccCCHHHHHHH
Confidence 89999999998 477789999998642 1222 23444444444443 34445579999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||++++|++|+|++
T Consensus 154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~ 224 (280)
T PRK13633 154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVM 224 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998753 789999999999998899999999999987
No 198
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1e-42 Score=366.57 Aligned_cols=202 Identities=26% Similarity=0.372 Sum_probs=173.2
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCC--ceEEEcceeCCCCChHHHhc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVE--GVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~--G~I~idg~di~~~~~~~lr~ 414 (597)
.++|+++||+++|++ .++|+|+||+|++|+.++|+||||||||||+++|+|++ |++ |+|.+||.++.+.+. .++
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred ceEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 357999999999964 56999999999999999999999999999999999997 578 999999999987665 367
Q ss_pred CcEEEeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
.|+||+|++.+|. .|++|||.++- ..+.++ +.++++.. |++.........||||||||+|||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~----------gL~~~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV----------GLGDAAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------CCCchhhCChhhCCHHHHHHHHHH
Confidence 8999999999996 49999998641 233333 33333333 444445566679999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~ 219 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988765 689999999999875 599999999999998
No 199
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-43 Score=354.79 Aligned_cols=202 Identities=19% Similarity=0.273 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+...+++.|+|
T Consensus 7 ~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 7 RLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred EEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 5999999999974 56999999999999999999999999999999999987 478999999999998888888889999
Q ss_pred EeCCCCCCC-ccHHhhcccCC-C-------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE-K-------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~-~-------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++.+|. .|++||+.++. . .. ++++.++++..++ +.........||||||||++||
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI----------THLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC----------HHHhcCCcccCChHHHHHHHHH
Confidence 999999885 69999997531 1 01 1234444444444 3334456789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++++|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998754 6899999999998755 99999999999987
No 200
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.5e-43 Score=369.38 Aligned_cols=200 Identities=26% Similarity=0.355 Sum_probs=172.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++++|++ .++|+|+||++++||.++|+||||||||||+++|+|+++ ++|+|.+||.++.+.+++ ++.|+|
T Consensus 14 ~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred eEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 4899999999964 569999999999999999999999999999999999985 689999999999877654 578999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. .|++|||.++- ..+.. ++.++++..++. .........||||||||+||||||+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE----------EFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc----------hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998742 22322 334444444443 3344455799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998764 689999999999875 599999999999998
No 201
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-43 Score=357.38 Aligned_cols=202 Identities=23% Similarity=0.336 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC--CChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED--VPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~--~~~~~lr~~I~ 417 (597)
|+++||+++|+..+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||.++.. .+...++++|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 6899999999754579999999999999999999999999999999999985 68999999999852 23456789999
Q ss_pred EEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
|+||++ .+|+.|++||+.++. ..+.++ +.++++..++ +.........|||||+||++||||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L----------~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGM----------EGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----------chhhcCChhhCCHHHHHHHHHHHH
Confidence 999997 578899999997532 222222 3333333333 222334456899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||++..+. .||+|++|++|++++
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 789999999999987 599999999999998
No 202
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-43 Score=353.47 Aligned_cols=206 Identities=26% Similarity=0.423 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.++++||+++|++ .++|+|+||+|++|+.+||+||||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 4899999999964 469999999999999999999999999999999999873 48999999999853 44567
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccCC---C-CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPFE---K-YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~-~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
+|+.|+||+|++.+|. .|++||+.++. . .+. +.+.++++..++.+++ .........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------KDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------hhHhhCCcccCCHHHHHH
Confidence 8899999999999997 59999997521 1 111 2234444444443222 234556678999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe------CCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD------SGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~------~G~Ive 552 (597)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999998877799999999999986 599999997 799987
No 203
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=9.4e-43 Score=352.56 Aligned_cols=201 Identities=23% Similarity=0.316 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+||.++...+...+++.++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 689999999964 579999999999999999999999999999999999984 789999999999998888888899999
Q ss_pred eCCCC-CCCccHHhhcccCCC-C----------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPV-LFSGTLRKNLDPFEK-Y----------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~-LF~gTI~eNI~~~~~-~----------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||++. .+..|++||+.++.. . .++++.++++..++ ..........||||||||++|||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~G~~qrl~la~ 150 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL----------SHLADRDMSTLSGGERQRVHVAR 150 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc----------HhhhcCCcccCCHHHHHHHHHHH
Confidence 99985 456899999976421 0 11233444444443 33344556789999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++.+|+++||||||++||+++...+.+.|.++.+ +.|+|++||+++.+. .||+|++|++|++++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 99999999999999999999999999999998754 689999999999995 599999999999987
No 204
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.9e-43 Score=346.09 Aligned_cols=204 Identities=27% Similarity=0.367 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH---HHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS---KLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~---~lr 413 (597)
++++||++.|++. +++|+|+||++++|+.+||+|+||||||||+++|+|+++ ++|+|.+||.++.+.+.. .++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 569999999999999999999999999999999999985 789999999999877643 467
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+.|+|+||++.+|. .|+.||+.+.. ..+.++..+. +.+.++. -|++.........||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER-----ARAMLEA-VGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHH-cCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 89999999999998 69999997532 2233322211 1222222 245555556667999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
++++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999988764 7999999999998888999999999986
No 205
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=332.96 Aligned_cols=171 Identities=33% Similarity=0.491 Sum_probs=158.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC--hHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP--LSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~--~~~lr~~I~ 417 (597)
|+++|++++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++ ++|+|.+||.++.+++ ...++++++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 478999999964 569999999999999999999999999999999999985 6899999999998876 567889999
Q ss_pred EEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|++|++.+|. .|++||+.+. ||||||||++||||++++|+++
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG-------------------------------------LSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred EEecCCccCCCCCHHHheeec-------------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence 9999999986 5999999763 9999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCe
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGV 549 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~ 549 (597)
||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999998765 589999999999998 599999999985
No 206
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=331.36 Aligned_cols=169 Identities=30% Similarity=0.515 Sum_probs=156.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++ .++|+|+||++++||.++|+||||||||||+++|+|++ |.+|+|.+||.++...+ ..+|+.++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 478999999964 46999999999999999999999999999999999998 47899999999998765 5678899999
Q ss_pred eCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 420 PQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
||++.+|.+ |++||+. ||||||||++|||||+++|++|||
T Consensus 79 ~q~~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 79 PEEPSLYENLTVRENLK---------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred ecCCccccCCcHHHHhh---------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999986 9999984 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~I 550 (597)
||||++||+.+...+.+.|+++.+ +.|+|++||+.+.+. .||+|++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999998754 589999999999887 5899999999975
No 207
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.2e-43 Score=346.46 Aligned_cols=208 Identities=20% Similarity=0.321 Sum_probs=167.4
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr 413 (597)
++|+||+|.|++. +++|+|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999754 689999999999999999999999999999999999864 6899999999875 34678
Q ss_pred cCcEEEeCCCCCCCc-cHHhhcccCCC-CChHHHHHHHHHhcHHH-HHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 414 SNISIIPQDPVLFSG-TLRKNLDPFEK-YPDYVLWTALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i~~a~~~a~l~~-fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+.|+|+||++.+|++ |++||+.+... .......++.......+ .++. -|++.........|||||+||++||||++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD-LALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh-hcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 899999999999987 99999975311 00000011111111112 1221 24444445566899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCc-hh-HhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRL-HT-IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl-st-i~~~D~Iivl~~G~Ive 552 (597)
++|++|||||||++||+.+...+.+.|.++. .++|+|++||++ .. ...||+|++|++|++++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999998875 368999999998 34 46799999999999975
No 208
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=353.47 Aligned_cols=206 Identities=24% Similarity=0.385 Sum_probs=176.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++.. .+...
T Consensus 20 ~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 20 VFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred eEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 5999999999964 469999999999999999999999999999999999863 38999999999864 34456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---C---ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---Y---PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~---~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||||++.+|+.|+.||+.++.. . .++++.++++.+++.+++. .........||||||||++|
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK------DKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH------HHhcCCcccCCHHHHHHHHH
Confidence 7899999999999999999999976421 1 1334555666666544432 23445677999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe---------CCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD---------SGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~---------~G~Ive 552 (597)
||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||++++|+ +|++++
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999877899999999999986 599999998 899988
No 209
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.8e-42 Score=352.88 Aligned_cols=202 Identities=20% Similarity=0.288 Sum_probs=170.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~ 415 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+.. .++++
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 4899999999964 56999999999999999999999999999999999998 5789999999999876643 35788
Q ss_pred cEEEeCCCCCCCc-cHHhhcccC-C---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPF-E---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~-~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|+||||++.+|.+ |++||+.+. . ..+.+ ++.++++.. |++.........||||||||++||
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV----------GLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHc----------CChhhhhCChhhCCHHHHHHHHHH
Confidence 9999999999986 999999752 1 12222 122222222 444334445678999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|++++
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999999999999998753 6899999999998865 99999999999987
No 210
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-43 Score=357.93 Aligned_cols=206 Identities=26% Similarity=0.363 Sum_probs=173.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---c---CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---E---VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~---~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+. | ++|+|.+||.++... +...
T Consensus 39 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 39 HVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred EEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 4899999999964 46999999999999999999999999999999999974 3 689999999998653 3345
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||+|++.+|++|++||+.++. ... . +++.++++..++.+. +..........||||||||+
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE------VSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc------hhhHhhCChhhCCHHHHHHH
Confidence 788999999999999999999998632 121 1 223344444443221 12234556789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988777899999999999865 99999999999987
No 211
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=361.07 Aligned_cols=205 Identities=22% Similarity=0.291 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHH
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~l 412 (597)
|+++|++++|+.. ..+|+||||+|++||.+||||+||||||||+++|+|+++ ++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7999999999643 369999999999999999999999999999999999874 57999999999999887665
Q ss_pred h----cCcEEEeCCCC--CCC-ccHHhhcc----cCCCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh
Q psy1502 413 R----SNISIIPQDPV--LFS-GTLRKNLD----PFEKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477 (597)
Q Consensus 413 r----~~I~~V~Q~~~--LF~-gTI~eNI~----~~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG 477 (597)
+ +.|+||||++. ++. -|+.+|+. .....+ .+++.++++..++.+. ...+......|||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~-------~~~l~~~p~~LSg 156 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP-------ASRLDVYPHQLSG 156 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------HHHHhCCchhCCH
Confidence 4 37999999995 443 46665553 221122 2334445554444321 2335567789999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||++|||||+.+|++||+|||||+||+.+...+.+.|.++.+ +.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998754 789999999999995 599999999999999
No 212
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=352.22 Aligned_cols=207 Identities=25% Similarity=0.445 Sum_probs=175.4
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC------CceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+++|++ +++|+|+||++++|+.+||+|+||||||||+++|+|++++ +|+|.+||.++.. .+..
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 35999999999964 4699999999999999999999999999999999999864 7999999999853 3456
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
.+|+.++|++|++.+|..|++||+.+.. .. + ++++.++++..++.+++. ...+.....||||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK------HKIHKSALDLSGGQQQR 158 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh------hHhcCCcccCCHHHHHH
Confidence 7789999999999999999999997531 11 2 223445555555544333 23456778999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeC-----CeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDS-----GVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~-----G~Ive 552 (597)
++||||++++|++|||||||++||+++...+.+.|.++. .++|+|+|||++..+. .||+|++|++ |++++
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 999999999999999999999999999999999998864 4799999999999986 4899999999 99987
No 213
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.8e-42 Score=358.62 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++... ...+|++|+|
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEE
Confidence 3899999999964 56999999999999999999999999999999999987 5789999999998754 3567889999
Q ss_pred EeCCCCCCC-ccHHhhcccC-C--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF-E--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~-~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+|. .|++||+.+. . ..+..+..+.++ +.++. .|++.........||||||||++|||||+.+|+
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~-~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEF-ARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999985 6999999742 1 233333322211 12211 233333344456899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+.+...+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~ 215 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIA 215 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998874 47899999999999965 99999999999987
No 214
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=350.13 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-----CceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-----EGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-----~G~I~idg~di~~--~~~~~ 411 (597)
-++++||+++|++ +++|+|+||+|++|+.+||+|+||||||||+++|+|+++ + +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGD-KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECC-EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 3789999999964 579999999999999999999999999999999999873 2 7999999999875 34557
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccCC---CC-ChHHHHHH----HHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPFE---KY-PDYVLWTA----LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~-~~e~i~~a----~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
+|+.|+|++|++.+|. .|++||+.++. .. .+++..+. ++..++.+. +.........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE------VKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh------hhhhhcCCcccCCHHHHHH
Confidence 7889999999999998 59999997531 11 23333222 222222222 1122334467899999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998778999999999999985 89999999999987
No 215
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-42 Score=359.44 Aligned_cols=201 Identities=26% Similarity=0.397 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ ..+|+||||+|++||++||+||+|||||||+++|+|++ |++|+|.++|.|+...+ ...|++|||
T Consensus 7 ~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~ 84 (306)
T PRK13537 7 PIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGV 84 (306)
T ss_pred eEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEE
Confidence 5899999999964 56999999999999999999999999999999999987 57899999999997654 457899999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHHHH----HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYVLW----TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~----~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||++.+|. .|++||+.+.. ..+..+.. ++++..++. +..++.+ .+||||||||++|||||+
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE------NKADAKV----GELSGGMKRRLTLARALV 154 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc------hHhcCch----hhCCHHHHHHHHHHHHHh
Confidence 999999986 69999997521 23333222 222222221 2334444 589999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||.++.+.. ||+|++|++|++++
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998754 7899999999999965 99999999999998
No 216
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=358.42 Aligned_cols=206 Identities=23% Similarity=0.435 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|++ |.+|+|.+||.++... +...
T Consensus 45 ~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 45 KLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred eEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 5899999999964 56999999999999999999999999999999999986 3589999999998753 4567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---------------C-----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCC
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---------------Y-----PDYVLWTALQEVELKDMIMEGAGLNMTVYEG 471 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---------------~-----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~ 471 (597)
+|+.|+||||++.+|++|++||+.++.. . .++++.++++.+++.+ ++++.+...
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~ 197 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD------EVNDRLDDN 197 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch------hhhHHhcCc
Confidence 7889999999999999999999975311 0 1122334444443322 344566777
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEE-EEEeCCe
Q psy1502 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKV-LVMDSGV 549 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~I-ivl~~G~ 549 (597)
..+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|++|+
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~ 277 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGE 277 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCE
Confidence 8899999999999999999999999999999999999999999999998878999999999999865 9997 5689999
Q ss_pred EEE
Q psy1502 550 AVV 552 (597)
Q Consensus 550 Ive 552 (597)
+++
T Consensus 278 i~~ 280 (305)
T PRK14264 278 LVE 280 (305)
T ss_pred EEE
Confidence 987
No 217
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-42 Score=353.59 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~ 411 (597)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+. |++|+|.+||.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999632 46999999999999999999999999999999999987 5789999999998653 3456
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaI 485 (597)
.++.|+||||+| .+|+.|++|||.++. ..+.++..+. +.++++. -|+++ ........||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~-~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKK-VGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH-cCCChhHhhCCcccCCHHHHHHHHH
Confidence 778999999998 588899999997531 2333322211 1122222 35542 4456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+++...+.+.|+++. .+.|+|++||+++.+. .||++++|++|++++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999875 4789999999999985 599999999999987
No 218
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-42 Score=329.09 Aligned_cols=169 Identities=48% Similarity=0.781 Sum_probs=159.8
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++|+|+||+|++|+.++|+||+|||||||+++|+|++ |.+|+|.++|.++..++...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999653 36999999999999999999999999999999999997 478999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
++|++.+|+.|+.||+ ||||||||++||||++.+|++|||
T Consensus 81 ~~~~~~~~~~t~~e~l----------------------------------------LS~G~~~rl~la~al~~~p~llll 120 (171)
T cd03228 81 VPQDPFLFSGTIRENI----------------------------------------LSGGQRQRIAIARALLRDPPILIL 120 (171)
T ss_pred EcCCchhccchHHHHh----------------------------------------hCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
||||++||+.+...+.+.|.++.+++|+|++||++..+..||++++|++|+
T Consensus 121 DEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred ECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999998877899999999999998899999999985
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=350.55 Aligned_cols=205 Identities=23% Similarity=0.330 Sum_probs=176.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~l 412 (597)
+.++++++.|. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+||.++... ....+
T Consensus 9 ~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 87 (261)
T PRK14263 9 MDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87 (261)
T ss_pred EEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence 78999999995 3579999999999999999999999999999999999984 489999999998653 44567
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
++.|+||||++.+|+.|++|||.++.. ...+++.++++.+++.+.+. ...++...+|||||+||++||
T Consensus 88 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~------~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK------DKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred hhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh------hhhhCCcccCCHHHHHHHHHH
Confidence 889999999999999999999986421 12245666777766644432 234567789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe--------CCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD--------SGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~--------~G~Ive 552 (597)
|||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|++++
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 999999999999999999999999999999999877889999999999886 599999996 899998
No 220
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.2e-42 Score=345.88 Aligned_cols=199 Identities=27% Similarity=0.363 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++.+||.+||+||||||||||+++|+|+++ .+|+|.+||.++...+. .++.++||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEE
Confidence 478999999974 569999999999999999999999999999999999975 68999999999986653 47889999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|++ |++||+.+.. ..+ ++++.++++..+ +.-.......+|||||+||++||||+++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~lS~G~~qrl~laral~~ 147 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQ----------LEGLGDRYPNQLSGGQRQRVALARALAV 147 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcC----------CHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999975 9999997632 122 122333333333 3333344557899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++||||||++||+++...+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 148 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 148 EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999999999999999999999998754 6899999999999765 99999999999988
No 221
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-42 Score=348.27 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=166.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+ + |++|+|.+||.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECC-EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 478999999964 5699999999999999999999999999999999998 3 578999999999988877665 4559
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----C------CChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCC-CCChhHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----K------YPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGT-NFSVGQRQLI 483 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~------~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~-~LSGGQrQRI 483 (597)
+||||++.+|.+ |++||+.+.. . .+.++..+ .+.+.++. -|++... ..... .||||||||+
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLAL-LGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHH-cCCchhhcccccccCcCHHHHHHH
Confidence 999999999975 8999986421 0 11111111 11222222 2443222 22223 5999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence 999999999999999999999999999999999998753 6899999999999976 79999999999987
No 222
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-42 Score=342.42 Aligned_cols=197 Identities=25% Similarity=0.379 Sum_probs=167.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|+. . ..|+||+|++|+.+||+||||||||||+++|+|+++ .+|+|.+||.++...+.. ++.++||
T Consensus 2 l~~~~l~~~~~~-~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH-L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76 (232)
T ss_pred eEEEEEEEEECC-c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEEE
Confidence 689999999964 2 249999999999999999999999999999999985 789999999998876542 5789999
Q ss_pred eCCCCCCCc-cHHhhcccCC--C-----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE--K-----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~--~-----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|.+ |++||+.+.. . ..++++.++++..++.+++ ......||||||||++||||+++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLL----------ARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHH----------hCCcccCCHHHHHHHHHHHHHhc
Confidence 999999985 9999997531 1 1133456666666554443 33345899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 210 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW 210 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988753 7899999999999865 89999999999987
No 223
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=346.97 Aligned_cols=199 Identities=25% Similarity=0.340 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.+||+++.+.+.. ++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceEEE
Confidence 478999999964 479999999999999999999999999999999999985 679999999999876543 6789999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|.+ |++||+.+.. ..+ ++++.++++.. |++..+......||||||||++||||+++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~lS~G~~qrl~laral~~ 147 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV----------QLEGYANRKPSQLSGGQQQRVAIARALVN 147 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999975 9999997531 112 22333334433 44444455567999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 148 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 148 EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999999999999998764 7899999999999865 89999999999987
No 224
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=348.84 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++... +..++||
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 789999999964 57999999999999999999999999999999999997 5789999999998643 3469999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++.+|. .|++||+.+.. ..+..+.. ..+.+.++. -|++........+||||||||++|||||+++|++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~-~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKK-VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHH-cCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999987 69999997531 22222111 111222222 2444445556789999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEe--CCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMD--SGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~--~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999874 37999999999999865 99999998 599998
No 225
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=359.61 Aligned_cols=204 Identities=22% Similarity=0.277 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeCC---------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh
Q psy1502 340 KIEFQNTNVRYLS---------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~ 409 (597)
-|+++|++++|+. ...+|+||||+|++||++||||+||||||||+++|+|+.+ ++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 3899999999952 2469999999999999999999999999999999999974 78999999999998875
Q ss_pred H---HHhcCcEEEeCCCC--CCC-ccHHhhccc----CCCCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCC
Q psy1502 410 S---KLRSNISIIPQDPV--LFS-GTLRKNLDP----FEKYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF 475 (597)
Q Consensus 410 ~---~lr~~I~~V~Q~~~--LF~-gTI~eNI~~----~~~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~L 475 (597)
. .+|++|+||+|+|. |+. .|+.+|+.. ....+. +++.++++.+++.+ .........|
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~p~~L 155 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP---------EHYDRYPHMF 155 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh---------HHhcCCCccC
Confidence 3 56789999999984 555 599998852 112222 23444444444421 1223446789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++||+||||++||..+...|.+.|.++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988754 7899999999999975 99999999999998
No 226
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.4e-42 Score=326.47 Aligned_cols=163 Identities=29% Similarity=0.410 Sum_probs=150.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++++++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.++|. ++++|+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 478999999975567999999999999999999999999999999999997 47899999873 689999
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+|++.++++|++||+.++ ....||||||||++||||++++|++||||
T Consensus 70 ~q~~~~~~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred CCCCccccccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999763 34789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
|||++||+++...+.+.|.++ ++|+|++||+++....||+|++|++|-
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999987 589999999999888899999998864
No 227
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.6e-42 Score=358.39 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=170.1
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC----CceEEEcceeCCCCChHHH
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----EGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~----~G~I~idg~di~~~~~~~l 412 (597)
-++++|++++|+. ..++|+||||+|++||++||||+||||||||+++|+|++++ +|+|.+||.|+..++...+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 24699999999999999999999999999999999999853 8999999999999887765
Q ss_pred h----cCcEEEeCCC--CCCC-ccHHhhccc----CCCCChHHH----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh
Q psy1502 413 R----SNISIIPQDP--VLFS-GTLRKNLDP----FEKYPDYVL----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477 (597)
Q Consensus 413 r----~~I~~V~Q~~--~LF~-gTI~eNI~~----~~~~~~e~i----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG 477 (597)
+ ++|+||+|++ .++. .|+.+|+.. ....+.++. .++++.+++. ++ ...++.....|||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~------~~-~~~~~~~p~~LSg 164 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP------EA-RKRMKMYPHEFSG 164 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------Ch-HHHhcCCcccCCH
Confidence 3 4899999998 4554 588887742 222333332 2222222211 11 2345677889999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||++|||||+.+|++||+|||||+||+.+...|.+.|.++.+ +.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999988765 789999999999997 599999999999999
No 228
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.6e-42 Score=351.23 Aligned_cols=203 Identities=24% Similarity=0.293 Sum_probs=168.6
Q ss_pred EEEEeeEEEeCC--------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLS--------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
|+++||+++|+. ..++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 84 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY 84 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhh
Confidence 899999999952 246999999999999999999999999999999999998 57899999999997656666
Q ss_pred HhcCcEEEeCCCC--CCC-ccHHhhcccC----CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 412 LRSNISIIPQDPV--LFS-GTLRKNLDPF----EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 lr~~I~~V~Q~~~--LF~-gTI~eNI~~~----~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+++.|+||||++. +++ -|+.+|+.+. .... ++++.++++..++.+ -........||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~~LS~G~~ 155 (267)
T PRK15112 85 RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP---------DHASYYPHMLAPGQK 155 (267)
T ss_pred HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh---------HHHhcCchhcCHHHH
Confidence 6778999999985 444 4889998531 1112 233445555554421 112234468999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++||||++++|+||||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||++++|++|++++
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999998753 7899999999999986 99999999999987
No 229
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=349.79 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=173.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C--------CceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V--------EGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~--------~G~I~idg~di~~~~~~~ 411 (597)
|+++|++++|++ +++|+|+||+|++|+.+||+||||||||||+++|+|+++ + +|+|.+||.++...+...
T Consensus 2 l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 689999999964 579999999999999999999999999999999999875 5 899999999998888888
Q ss_pred HhcCcEEEeCCCC-CCCccHHhhcccCC-C-------CCh---HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 412 LRSNISIIPQDPV-LFSGTLRKNLDPFE-K-------YPD---YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 412 lr~~I~~V~Q~~~-LF~gTI~eNI~~~~-~-------~~~---e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
+++.++||||++. +|+.|++||+.++. . .+. +.+.++++. .|+++.++.....|||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL----------AGATALVGRDVTTLSGGE 150 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH----------cCcHhhhcCCcccCCHHH
Confidence 8889999999986 67899999997632 1 111 112222222 366666777788999999
Q ss_pred HHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeC
Q psy1502 480 RQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDS 547 (597)
Q Consensus 480 rQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~ 547 (597)
|||++|||||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||++++|++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999 59999999999999999999999999998754 689999999999996 5999999999
Q ss_pred CeEEE
Q psy1502 548 GVAVV 552 (597)
Q Consensus 548 G~Ive 552 (597)
|+|++
T Consensus 231 G~i~~ 235 (272)
T PRK13547 231 GAIVA 235 (272)
T ss_pred CeEEE
Confidence 99987
No 230
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=366.53 Aligned_cols=188 Identities=29% Similarity=0.350 Sum_probs=160.2
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----hcCcEEEeCCCCCCC-c
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL----RSNISIIPQDPVLFS-G 428 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l----r~~I~~V~Q~~~LF~-g 428 (597)
.+|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.|+.+.+...+ +++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 3899999999999999999999999999999999998 578999999999998876553 468999999999996 5
Q ss_pred cHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 429 TLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 429 TI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
|++||+.++. ..+. +++.++++.. |++........+||||||||++|||||+.+|+|||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~----------gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQV----------GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999998642 2222 2233344444 344344455679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 502 TANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||+||+.+...+++.|.++. .++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999998874 3789999999999985 599999999999987
No 231
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=7.2e-42 Score=353.68 Aligned_cols=204 Identities=23% Similarity=0.353 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++|++++|++ +.+|+|+||+|++||.+||+||+|||||||+++|+|++ |++|+|.+||.++.. +...+|+++||+
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~ 80 (301)
T TIGR03522 3 IRVSSLTKLYGT-QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEECC-EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEe
Confidence 789999999964 56999999999999999999999999999999999987 578999999999976 445678999999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+|.+ |++||+.+.. ..+.++..+.+ .+.++. -|++.........||||||||++|||||+++|++
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~-~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV-----EEMIEL-VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-CCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999975 9999997532 12222222211 122222 2566556667789999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~ 212 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA 212 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998778999999999998875 99999999999997
No 232
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=364.58 Aligned_cols=200 Identities=24% Similarity=0.348 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+. |++|+|.+||.++.+.+. .++.|||
T Consensus 19 ~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 19 LLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred eEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 4999999999964 56999999999999999999999999999999999998 578999999999987664 5789999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. .|++|||.++. ..+..+ +.++++.. |++.........||||||||+||||||+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l----------~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLV----------HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998742 233332 23333333 3443444556789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++|+||||||+||+.+...+.+.|.++.+ +.|+|+|||+++.+. -||+|++|++|+|++
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~ 230 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999988877643 689999999999875 599999999999998
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-42 Score=334.27 Aligned_cols=177 Identities=22% Similarity=0.339 Sum_probs=157.7
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHh
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr 413 (597)
.|+++|++|+|++ ++++|+|+||++++|+.++|+||||||||||+++|+|++ |++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 3899999999964 257999999999999999999999999999999999975 46899999999885 5678
Q ss_pred cCcEEEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++++|++|++.+|.+ |++||+.+.. .+ . .||||||||++||||++++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~------------~-----------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LL------------R-----------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HH------------h-----------cCCHHHhHHHHHHHHHhcC
Confidence 899999999988875 9999997421 00 0 8999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--HhhcCEEEEEeC-CeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--IMDSDKVLVMDS-GVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i~~~D~Iivl~~-G~Ive 552 (597)
|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++. ...||+|++|++ |++++
T Consensus 127 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 127 PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 999999999999999999999999988754 7899999999984 467999999999 99975
No 234
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-42 Score=334.65 Aligned_cols=185 Identities=26% Similarity=0.343 Sum_probs=158.7
Q ss_pred EEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHh
Q psy1502 341 IEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr 413 (597)
+.++||+|.|+. ++++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++...+ ..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 689999999963 4579999999999999999999999999999999999874 5899999999998765 4567
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++++|++|++.+|. .|++||+.+..... ..+....||||||||++||||++++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence 89999999998887 59999997632110 1234468999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccC-chhH-hhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHR-LHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHr-lsti-~~~D~Iivl~~G~Ive 552 (597)
|++|||||||++||+++.+.+.+.|.++.+ +.|+|+++|+ ++.+ +.||++++|++|++++
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 999999999999999999999999998764 4676766554 5565 5699999999999975
No 235
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.2e-41 Score=344.85 Aligned_cols=206 Identities=20% Similarity=0.269 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEccee-----CCCCChHH--
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDID-----TEDVPLSK-- 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~d-----i~~~~~~~-- 411 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 3899999999964 56999999999999999999999999999999999998 578999999998 87776544
Q ss_pred --HhcCcEEEeCCCC--CCC-ccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHH
Q psy1502 412 --LRSNISIIPQDPV--LFS-GTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 412 --lr~~I~~V~Q~~~--LF~-gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQ 481 (597)
+++.++||||++. ++. .|+.+|+.+. ...+..++.+ .+.++++.+ |++ +.....+..|||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV-EIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc-CCChhHHhCCCccCCHHHHH
Confidence 3668999999984 443 5888888531 1111122211 224455443 454 4677888999999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+++...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988754 789999999999997 599999999999987
No 236
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.9e-42 Score=330.11 Aligned_cols=170 Identities=28% Similarity=0.459 Sum_probs=154.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC-hHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP-LSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~-~~~lr~~I~~ 418 (597)
|+++|++++| +|+|+||++++|+.++|+||||||||||+++|+|+++ ++|+|.+||.++...+ .+.+|++++|
T Consensus 5 l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 5 LEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 8999999999 8999999999999999999999999999999999985 7899999999998887 3457889999
Q ss_pred EeCCC----CCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDP----VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~----~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
++|++ .+++.|++||+.+... ||||||||++||||++++|+
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~~qrl~la~al~~~p~ 124 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGNQQKVVLARWLARDPR 124 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHHHHHHHHHHHHccCCC
Confidence 99995 3445799999976311 99999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
+|||||||++||+++...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 125 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999875 37899999999999876 999999999975
No 237
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=347.61 Aligned_cols=202 Identities=20% Similarity=0.292 Sum_probs=169.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C---CceEEEcceeCCCC-----ChH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V---EGVIKIDDIDTEDV-----PLS 410 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~---~G~I~idg~di~~~-----~~~ 410 (597)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ + +|+|.+||.++... +..
T Consensus 4 ~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQ-HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCC-eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 3899999999964 579999999999999999999999999999999999984 3 49999999998654 245
Q ss_pred HHhcCcEEEeCCCCCCC-ccHHhhcccCCC-C-----------C---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCC
Q psy1502 411 KLRSNISIIPQDPVLFS-GTLRKNLDPFEK-Y-----------P---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTN 474 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~-~-----------~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~ 474 (597)
.+++.++|+||++.+|. .|++||+.++.. . . .+++.++++.. |++.........
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~ 152 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV----------GMVHFAHQRVST 152 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc----------CCHHHHhCCccc
Confidence 67889999999999887 599999975321 0 0 11233333333 343344556678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Iv 551 (597)
||||||||++||||++.+|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998863 689999999999864 59999999999998
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
+
T Consensus 233 ~ 233 (262)
T PRK09984 233 Y 233 (262)
T ss_pred E
Confidence 7
No 238
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.1e-41 Score=344.45 Aligned_cols=202 Identities=22% Similarity=0.283 Sum_probs=167.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c----CCceEEEcceeCCCCChHHHhc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E----VEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~----~~G~I~idg~di~~~~~~~lr~ 414 (597)
.|+++||+++| ++++|+|+||+|++||.++|+|+||||||||+++|+|++ | ++|+|.+||.++... +..++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 48999999999 357999999999999999999999999999999999987 4 679999999998632 22346
Q ss_pred CcEEEeCCCC-CCC--ccHHhhccc-----CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPV-LFS--GTLRKNLDP-----FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~-LF~--gTI~eNI~~-----~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
.|+||||++. .|. .|+.+|+.. +....++++.++++..++.+ .++.++.....||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN-------AARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC-------hhhhhhcCCcccCHHHHHHHHHH
Confidence 8999999985 454 588888643 11223344555555444422 22356777889999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988753 689999999999986 599999999999987
No 239
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.6e-41 Score=355.30 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ ..+|+|+||+|++|+.+||+||+|||||||+++|+|++ |++|+|.++|.++...+ ..+++.|||
T Consensus 41 ~i~i~nl~k~y~~-~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~ 118 (340)
T PRK13536 41 AIDLAGVSKSYGD-KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGV 118 (340)
T ss_pred eEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEE
Confidence 4999999999964 46999999999999999999999999999999999987 57899999999997654 467899999
Q ss_pred EeCCCCCC-CccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLF-SGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF-~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+| +.|++||+.+.. ..+.++..+.+ .++++. .|++-.......+||||||||++|||||+.+|+
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~-~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEF-ARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999987 569999997521 22323222221 122221 233323333445899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|+|+.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998754 7999999999999965 99999999999997
No 240
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-42 Score=357.83 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHH
Q psy1502 341 IEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~l 412 (597)
|+++|++++|+. ...+|+||||+|++||++||||+||||||||+++|+|+.+ ++|+|.+||+++.+.+...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999952 3469999999999999999999999999999999999863 57999999999998887655
Q ss_pred h----cCcEEEeCCCCC--C-CccHHhhcccC---C---C--CC-----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCC
Q psy1502 413 R----SNISIIPQDPVL--F-SGTLRKNLDPF---E---K--YP-----DYVLWTALQEVELKDMIMEGAGLNMTVYEGG 472 (597)
Q Consensus 413 r----~~I~~V~Q~~~L--F-~gTI~eNI~~~---~---~--~~-----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G 472 (597)
+ +.|+||+|++.. + ..|+.+|+... . . .. ++++.++++..++.+. ........
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~-------~~~~~~~p 156 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH-------KDAMRSFP 156 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh-------HHHHhCCc
Confidence 3 479999999973 3 35899998521 0 0 01 1234444444444221 12234556
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
..||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998764 6899999999999965 99999999999
Q ss_pred EEE
Q psy1502 550 AVV 552 (597)
Q Consensus 550 Ive 552 (597)
|+|
T Consensus 237 ive 239 (330)
T PRK15093 237 TVE 239 (330)
T ss_pred EEE
Confidence 998
No 241
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.6e-42 Score=331.83 Aligned_cols=178 Identities=30% Similarity=0.435 Sum_probs=158.2
Q ss_pred cEEEEeeEEEeCC-----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--c-CCceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRYLS-----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--E-VEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~-~~G~I~idg~di~~~~~~~ 411 (597)
.|+++||+|+|++ .+++|+|+||++++|+.++|+||||||||||+++|+|++ + .+|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 3899999999975 367999999999999999999999999999999999987 5 68999999999875 36
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+++.++|++|++.+|. .|++||+.+... + . .||||||||++||||++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--------------~-------~-----------~LS~G~~qrv~laral~ 127 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--------------L-------R-----------GLSGGERKRVSIALELV 127 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--------------h-------c-----------cCCHHHHHHHHHHHHHH
Confidence 7889999999999987 599999854210 0 0 89999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCch-hH-hhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLH-TI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrls-ti-~~~D~Iivl~~G~Ive 552 (597)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++ .+ ..||++++|++|++++
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 99999999999999999999999999998753 789999999997 45 4599999999999975
No 242
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=9.3e-42 Score=347.30 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCC--------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh--
Q psy1502 341 IEFQNTNVRYLS--------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-- 409 (597)
Q Consensus 341 I~f~nVsf~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-- 409 (597)
|+++||+|+|+. ++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 889999999963 467999999999999999999999999999999999997 578999999999988765
Q ss_pred -HHHhcCcEEEeCCCC--CC-CccHHhhcccC-C---CCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHH
Q psy1502 410 -SKLRSNISIIPQDPV--LF-SGTLRKNLDPF-E---KYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQR 480 (597)
Q Consensus 410 -~~lr~~I~~V~Q~~~--LF-~gTI~eNI~~~-~---~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQr 480 (597)
..+++.++||+|++. ++ +.|+++|+.+. . ..+.+ .....+.+.+.. .|+++ ........||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRA-VDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHH-cCCChhHhhCCCccCChHHH
Confidence 346889999999983 44 47999998542 1 11111 112223344443 36764 56777889999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|++|||||||++||+++...+.+.|+++.+ ++|+|++||++..+.. ||++++|++|++++
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999999999988754 7899999999999975 99999999999987
No 243
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.3e-42 Score=350.50 Aligned_cols=202 Identities=26% Similarity=0.434 Sum_probs=177.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+.+|+..+.+|+||||+|++|+.+|++||+|||||||+++|+|+. |++|+|.++|.|...- ...++++|||
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEE
Confidence 4789999999964567999999999999999999999999999999999987 6889999999998766 6788999999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---C----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---K----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||+|.++. -|++||+.+.. . ..++.+.++++..++.+. -...-..||+|||||++||+||+
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK----------ANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh----------hCcchhhcCHHHHHHHHHHHHHh
Confidence 999999886 59999997531 1 224556667666665431 13445789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCC--cEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~--~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.++ +|+++.||.++.+.. ||+|++|++|+++.
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999998763 699999999999987 99999999999998
No 244
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=344.19 Aligned_cols=206 Identities=22% Similarity=0.313 Sum_probs=171.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEE------cceeCCCCChHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI------DDIDTEDVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~i------dg~di~~~~~~~l 412 (597)
.|+++|++++|++ +++|+|+||++++||.+||+|++|||||||+++|+|+++ ++|+|.+ +|.++...+...+
T Consensus 10 ~i~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYIND-KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecCC-ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 4899999999964 569999999999999999999999999999999999984 6655554 4577777777788
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccCC---CC-ChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPFE---KY-PDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~~---~~-~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|+.++|+||++.+|.+ |++||+.++. .. ++++ +.++++..++.+++ +......+..||||||||+
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV------YDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc------hhhhcCCcccCCHHHHHHH
Confidence 9999999999999975 9999998531 12 2222 23333333332211 1234567789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++.+|+++||||||++||+.++..+.+.|.++..++|+|++||+++.+. .||++++|++|++++
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE 232 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877899999999999994 699999999999987
No 245
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.8e-42 Score=335.44 Aligned_cols=192 Identities=24% Similarity=0.338 Sum_probs=160.8
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHHhcCcE
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKLRSNIS 417 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~lr~~I~ 417 (597)
++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|++ |++|+|.++|.++..++. +.+++.++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4799999964 56999999999999999999999999999999999987 578999999999765442 24678999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
||+|++.+|. .|++||+.+.. ..+ ++++.++++..++ +........+||||||||++|||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL----------NLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc----------hhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999997 69999997531 112 2233444444443 3334455678999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl 545 (597)
+++|++|||||||++||+++...+.+.|+++.+ ++|+|++||++..+..||+|++|
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999988754 78999999999988889999875
No 246
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.2e-42 Score=353.19 Aligned_cols=192 Identities=24% Similarity=0.352 Sum_probs=162.0
Q ss_pred EeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 349 ~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++.. ....+|++|+||||++.+|.
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCC
Confidence 464 356999999999999999999999999999999999987 578999999999876 44567889999999999997
Q ss_pred c-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 428 G-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 428 g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
. |++||+.+.. ..+.. ++.++++.. |++.........||||||||++|||||+++|++||||
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 149 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELF----------ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5 9999997531 22222 233333333 3333344456789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~ 204 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA 204 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999998875 36899999999999975 99999999999997
No 247
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=339.02 Aligned_cols=198 Identities=26% Similarity=0.368 Sum_probs=168.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.++|.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 478999999964 3899999999999999999999999999999999987 468999999999987654 36899999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|. .|++||+.+.. ..+ ++++.++++..++.+ .+......||||||||++||||+++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH----------LLNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh----------HHhcCcccCCHHHHHHHHHHHHHHc
Confidence 99999995 79999997531 122 223344444444433 3444557899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++++|||||++||+.+.+.+.+.|+++.. ++|+|++||++..+.. ||+|++|++|++++
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998754 7899999999999875 99999999999987
No 248
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-41 Score=333.70 Aligned_cols=201 Identities=23% Similarity=0.328 Sum_probs=166.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHHhcC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~lr~~ 415 (597)
+++ ||+++|++. .+ |+||+|++ |.++|+||||||||||+++|+|++ |++|+|.++|.++.+.+ ...+++.
T Consensus 2 ~~~-~l~~~~~~~-~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPDF-TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCCe-ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 355 999999653 34 99999999 999999999999999999999997 57899999999986532 3456789
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++||||++.+|. .|++||+.+... .+.++ ....+.++++. -|++.........||||||||++||||++.+|
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDL-LGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHH-cCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 999999999996 599999976421 12111 11122333333 35666667778899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999988754 689999999999986 599999999999975
No 249
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=356.69 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=168.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHHHhcC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~lr~~ 415 (597)
|++ ||+++|++ . .+ |+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+. +...++++
T Consensus 2 l~~-~l~k~~~~-~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 677 99999964 2 23 999999999999999999999999999999997 5789999999998753 24456889
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|+||+|++.+|. .|++||+.++. ...++++.++++..++ +.........||||||||++|||||+++|
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl----------~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGI----------EPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCC----------chhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999999999996 69999998752 2334445555555444 33445556799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA 209 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999988764 6899999999998865 99999999999987
No 250
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.1e-41 Score=334.50 Aligned_cols=197 Identities=26% Similarity=0.355 Sum_probs=168.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++ +++|+|+||++++||.+||+||||||||||+++|+|++ |++|+|.++|.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 478999999964 57999999999999999999999999999999999987 57899999999876432 3589999
Q ss_pred eCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+|. .|++||+.+. ...+++++.++++..++.++ .......||||||||++||||++++|++
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT----------GKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHH----------HhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 6999999752 12344555555555554433 3334568999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|.++.+ ++|+|++||++..+. .||+|++|++|++++
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999999999999999999999988753 689999999999985 599999999999987
No 251
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.3e-41 Score=324.19 Aligned_cols=174 Identities=30% Similarity=0.462 Sum_probs=156.5
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++||+++|++ +++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+...+++.++|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 47899999965 56999999999999999999999999999999999998 57899999999999988888899999999
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
| +++..++.++ +......||||||||++||||++++|+++||||
T Consensus 80 q--------------------------~l~~~gl~~~----------~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 80 Q--------------------------ALELLGLAHL----------ADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred H--------------------------HHHHcCCHhH----------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9 5555555443 234567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
||++||+++...+.+.|.++.+ ++|+|++||+++.+ ..||++++|++|++++
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999998765 68999999999998 5599999999999875
No 252
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=335.25 Aligned_cols=200 Identities=26% Similarity=0.360 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce---eCCCCChHHHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI---DTEDVPLSKLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~---di~~~~~~~lr~~ 415 (597)
+|.++|++..|+. .++++||||+|+.||.+|+.||||||||||+++|+|+. |+.|.|.+||. |.+... .-.++
T Consensus 2 ~i~i~~~~~~~~~-~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhccc-ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 4788999999864 46899999999999999999999999999999999986 78999999999 655533 33578
Q ss_pred cEEEeCCCCCC-CccHHhhcccCCC-----CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 416 ISIIPQDPVLF-SGTLRKNLDPFEK-----YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 416 I~~V~Q~~~LF-~gTI~eNI~~~~~-----~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
||+|+|+.-|| +.||++||+||-. .++ .++.+.++.+++. |+. ..-..+||||||||+|+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-------~la---~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-------GLA---DRYPAQLSGGQRQRVAL 148 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-------chh---hcCchhcChHHHHHHHH
Confidence 99999999999 5899999998742 222 2233334444332 221 23367999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||...|++|+||||++|||+.-.+.+.+-|++... +.|+++|||+...+. .||||+||++|+|..
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 9999999999999999999999999999888877654 689999999998875 599999999999987
No 253
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.6e-41 Score=315.28 Aligned_cols=158 Identities=29% Similarity=0.484 Sum_probs=146.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh-HHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL-SKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~-~~lr~~I~~ 418 (597)
|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|.+||.++...+. +..+++++|
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 478999999965 469999999999999999999999999999999999985 78999999999998875 456788999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
++| ||||||||++||||++++|++|||
T Consensus 80 ~~q-----------------------------------------------------LS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 80 VYQ-----------------------------------------------------LSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred EEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++||+++...+.+.|+++. ++.|+|++||++..+.. ||++++|++|++++
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998874 37899999999998764 99999999999975
No 254
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.8e-41 Score=326.84 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=157.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
++++|++++|++ +++|+|+||++++||.+||+|+||||||||+++|+|+ + |++|+|.+||.++.+.+.... |.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGG-KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCC-EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 478999999974 5799999999999999999999999999999999998 3 578999999999998876654 5569
Q ss_pred EEEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||||++.+|++ |+++|+ .. ....||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~~~~~~~~~~~l------------------------~~----------~~~~LS~G~~qrv~laral~~~p~i 125 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL------------------------RY----------VNEGFSGGEKKRNEILQLLLLEPDL 125 (200)
T ss_pred EEeecChhhccCccHHHHH------------------------hh----------ccccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999875 555544 00 1247999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh--hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM--DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~--~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999998754 789999999999998 599999999999987
No 255
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=5.4e-41 Score=339.17 Aligned_cols=206 Identities=19% Similarity=0.276 Sum_probs=170.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEccee-----CCCCChHH--
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDID-----TEDVPLSK-- 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~d-----i~~~~~~~-- 411 (597)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 3899999999964 46999999999999999999999999999999999998 478999999988 77666543
Q ss_pred --HhcCcEEEeCCCC--C-CCccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHH
Q psy1502 412 --LRSNISIIPQDPV--L-FSGTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 412 --lr~~I~~V~Q~~~--L-F~gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQ 481 (597)
+++.|+|++|++. + +..|+.+|+... ......+. ...+.++++.+ |++ +........|||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l-~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV-EIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc-CCChhhhhcCchhcCHHHHH
Confidence 3467999999985 2 345888888531 11111111 12334555554 454 5677888999999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+.+...+.+.|.+..+ +.|+|+|||++..+.. ||++++|++|++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988643 7899999999999985 99999999999987
No 256
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-41 Score=341.41 Aligned_cols=198 Identities=23% Similarity=0.332 Sum_probs=163.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHh-cCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLR-SNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr-~~I~ 417 (597)
.|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.. ..+ +.++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEE
Confidence 4899999999975567999999999999999999999999999999999997 578999999998752 233 4699
Q ss_pred EEeCCCCC---CCccHHhhcccCC-------CC----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDPVL---FSGTLRKNLDPFE-------KY----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~~L---F~gTI~eNI~~~~-------~~----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|+||++.+ +..++++|+.++. .. .++++.++++..++.++ .......||||||||+
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF----------RHRQIGELSGGQKKRV 151 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH----------hcCCcccCCHHHHHHH
Confidence 99999865 4568999986421 00 12234444555544333 2334467999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||+++++ +|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 999999999999999999999999999999999988754 789999999999875 59999777 899987
No 257
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.2e-41 Score=354.28 Aligned_cols=189 Identities=24% Similarity=0.301 Sum_probs=159.9
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce----eCCCCChHHHh----cCcEEEeCCCC
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI----DTEDVPLSKLR----SNISIIPQDPV 424 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~----di~~~~~~~lr----~~I~~V~Q~~~ 424 (597)
..+|+|+||+|++||+++|+|+||||||||+++|+|++ |++|+|++||. ++...+...++ ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999998 57899999996 67777665543 58999999999
Q ss_pred CCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 425 LFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 425 LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+|+ .|++||+.++. ..+.+ ++.++++..++.+ ........||||||||++|||||+.+|+||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~----------~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ----------WADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 997 79999998642 22222 2344444444433 334445689999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
|||||||+||+.+...+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999988764 78999999999997 5599999999999998
No 258
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.3e-40 Score=335.38 Aligned_cols=211 Identities=18% Similarity=0.250 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHh-cCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLR-SNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr-~~I 416 (597)
|+++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+. |++|+|.+||.++..++....+ +.+
T Consensus 2 i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 789999999974 56999999999999999999999999999999999983 5789999999999888776655 579
Q ss_pred EEEeCCCCCCCc-cHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc---CCCch-hhhCCC-CCCChhHHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG---AGLNM-TVYEGG-TNFSVGQRQLICLARAI 489 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l---~GldT-~vge~G-~~LSGGQrQRIaIARAl 489 (597)
+||+|++.++.. |..+++... +........+.+...++.+++... .|+.. ...... ..||||||||++||||+
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 999999987764 444443211 000000000011111122222221 12211 111122 37999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
+++|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~ 226 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence 999999999999999999999999999988754 6899999999999987 89999999999987
No 259
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.4e-40 Score=351.28 Aligned_cols=199 Identities=23% Similarity=0.315 Sum_probs=165.2
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHHhcCcEEE
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKLRSNISII 419 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~lr~~I~~V 419 (597)
|++++|++ .. + |+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++...+ ...+++.|+||
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 89999964 33 4 999999999999999999999999999999997 57899999999987543 34568899999
Q ss_pred eCCCCCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
+|++.+|. .|++||+.++. .....+.. ..+.+.++. -|++.........||||||||++|||||+.+|++||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~-~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIEL-LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHH-cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999997 49999998742 21211110 111222222 355555666778999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999998764 6899999999999865 99999999999987
No 260
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.6e-40 Score=324.01 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=164.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|++ |.+|+|.++|.++...+ ..++++++|+
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 478999999964 56999999999999999999999999999999999998 47899999999987543 4678899999
Q ss_pred eCCCCCC-CccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
||++.++ +.|++||+.+.. ..+++++.++++..++.++. ......||||||||++||||++++|++||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE----------DRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh----------cCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999887 589999997643 33556677777777765432 22346899999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH-hhcCEEEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI-MDSDKVLVM 545 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti-~~~D~Iivl 545 (597)
|||||++||+.+...+.+.|.++.+ ++|+|++||+...+ ..||+.+++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999987653 78999999986665 568999887
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.5e-40 Score=334.67 Aligned_cols=200 Identities=20% Similarity=0.302 Sum_probs=166.7
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+++||++. .+|+|+||+|++|+++||+|+||||||||+++|+|+++++|+|.+||.++...+...+++.++||||
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 46777774 2899999999999999999999999999999999998889999999999998888888889999999
Q ss_pred CCC-CCCccHHhhcccCCC--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-------
Q psy1502 422 DPV-LFSGTLRKNLDPFEK--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR------- 491 (597)
Q Consensus 422 ~~~-LF~gTI~eNI~~~~~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~------- 491 (597)
++. ++..|+++|+.++.. .+.++. ...+++.++. -|++.........||||||||++|||||+.
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p 150 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEA-LGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150 (248)
T ss_pred cCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHH-cCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCC
Confidence 985 456899999986421 111111 1112233333 245545566678999999999999999997
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 679999999999999999999999998875 4789999999999775 599999999999987
No 262
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.8e-41 Score=325.33 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=160.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.. ....++++++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEe
Confidence 689999999964 56999999999999999999999999999999999998 578999999999875 345678999999
Q ss_pred eCCCCCC-CccHHhhcccCCC--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFEK--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||++.++ ..|++||+.++.. ..+.++.++++..++. .........||||||||++||||++++|++|
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE----------HLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc----------hhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999987 5799999986421 1222333333333332 2223333579999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
||||||++||+.+...+.+.|+++. .++|+|++||+...+.+||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999863 47899999999999999997654
No 263
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-40 Score=325.56 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=164.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.... ..++++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 689999999964 56999999999999999999999999999999999987 57899999999987654 4567899999
Q ss_pred eCCCCCCC-ccHHhhcccCC---C-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---K-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+|++.++. .|++||+.+.. . .+++++.++++..++.++. ......||||||||++||||++++|+
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE----------DVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh----------hCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998886 69999997532 1 2344566666666654432 33456899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhc-CEEEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDS-DKVLVM 545 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~-D~Iivl 545 (597)
+|||||||++||+++...+.+.|.++. .++|+|++||+++.+..| +|++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998864 368999999999999665 777776
No 264
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-41 Score=305.23 Aligned_cols=192 Identities=26% Similarity=0.379 Sum_probs=167.9
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccH
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI 430 (597)
++.++|+|+||++.+||.+||.||||||||||++.++-|. |++|++++.|.|++.++++.+|++|+|+-|.|-||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 4567999999999999999999999999999999999987 589999999999999999999999999999999999999
Q ss_pred Hhhccc-C----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCC
Q psy1502 431 RKNLDP-F----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505 (597)
Q Consensus 431 ~eNI~~-~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 505 (597)
.||+.| + +..+.......++++++ -++.+..+-.+||||+||||||+|-|---|+||+|||+||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l---------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL---------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC---------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999975 2 12333333333333333 345566778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccCchh-HhhcCEEEEEeCCeEEE
Q psy1502 506 DPKTDLLIQRTIRKKF--ADCTVLTIAHRLHT-IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 506 D~~te~~I~~~l~~~~--~~~TvI~IaHrlst-i~~~D~Iivl~~G~Ive 552 (597)
|+.+.+.|.+.|.++. ++..++-|||.... ++++|+.+.+-.|++-+
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999998887 46799999999988 88999999999998755
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.8e-40 Score=332.94 Aligned_cols=190 Identities=29% Similarity=0.443 Sum_probs=165.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGY 71 (251)
T ss_pred EEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEE
Confidence 3899999999964 56999999999999999999999999999999999987 5789999987 357999
Q ss_pred EeCCCCCCC---ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPVLFS---GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~LF~---gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||++.++. .|+++|+......+++++.++++..++.++.. .....||||||||++||||++++|++
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID----------APMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred eccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998875 48999986544455677778887777765532 23568999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++ +|++
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 999999999999999999999988754 789999999999985 5999999975 6776
No 266
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.7e-40 Score=332.85 Aligned_cols=209 Identities=21% Similarity=0.261 Sum_probs=168.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHHhc-C
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKLRS-N 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~lr~-~ 415 (597)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ + |++|+|.+||.++..++...+++ .
T Consensus 7 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 3899999999964 4699999999999999999999999999999999997 4 57899999999999888766655 4
Q ss_pred cEEEeCCCCCCCc-cHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCC-CCChhHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGT-NFSVGQRQLICL 485 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~-~LSGGQrQRIaI 485 (597)
++|++|++.+|.+ |+.+|+.+... ..+.+..+.. ..+.+.++. -|+. +.+..... .||||||||++|
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKL-VGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHH-cCCchhhhccccccCCCHHHHHHHHH
Confidence 8999999999985 88999864211 0100000000 011122222 2343 33444444 599999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
|||++++|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999988754 7899999999999875 89999999999987
No 267
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-40 Score=362.87 Aligned_cols=206 Identities=21% Similarity=0.343 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeCCCCChHH-HhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDTEDVPLSK-LRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di~~~~~~~-lr~~ 415 (597)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++...+... +|+.
T Consensus 5 ~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFGG-VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeCC-eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 3899999999964 579999999999999999999999999999999999875 4899999999998777554 4678
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
++||||++.+|. .|++||+.++.. .+.++..+ .+.++++.+ |++.........||||||||++||||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL-KLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc-CCCCCcccchhhCCHHHHHHHHHHHH
Confidence 999999999887 599999976421 12222211 122333332 44434455567899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999998874 46899999999999875 99999999999987
No 268
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7e-40 Score=321.01 Aligned_cols=192 Identities=23% Similarity=0.290 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.. .. ++++++|+
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHYL 78 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEEe
Confidence 789999999964 46999999999999999999999999999999999997 578999999998753 22 78899999
Q ss_pred eCCCCCC-CccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++.++ +.|++||+.+.. ...++++.++++..++.++. ......||||||||++||||++++|++
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA----------HLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH----------cCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9988776 579999997532 23345566777766665432 222347999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
|||||||++||+.+...+.+.|.++. +++|+|++||++..+.. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999998763 47899999999999988 99988854
No 269
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.1e-40 Score=327.84 Aligned_cols=185 Identities=25% Similarity=0.347 Sum_probs=152.8
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNL 434 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI 434 (597)
|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999997 578999999999876543 2489999999997 6999999
Q ss_pred ccC-----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 435 DPF-----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 435 ~~~-----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
.+. ...++++..+. +.++++. -|++.........||||||||++|||||+.+|++|||||||++||+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAI-----VEEHIAL-VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred HHHHHhcccCCCHHHHHHH-----HHHHHHH-cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 753 12232222111 1122222 244444555667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 510 DLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 510 e~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 9999999988753 6899999999998865 99999999999987
No 270
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.8e-40 Score=321.98 Aligned_cols=194 Identities=21% Similarity=0.214 Sum_probs=161.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++|++++|++ +++++|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.++|+++... ..++.++|
T Consensus 11 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 4899999999964 469999999999999999999999999999999999985 789999999998753 34568999
Q ss_pred EeCCCCCCCc-cHHhhcccCC---CCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE---KYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~---~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|++.+|.+ |++||+.+.. ... ++.+.++++..+ +..........||||||||++||||++++|
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVG----------LAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcC----------ChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 9999996531 111 222333333333 322234445689999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeC
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDS 547 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~ 547 (597)
++|||||||++||+++.+.+.+.|.++. +++|+|++||+++.+. -||++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999998754 3689999999999996 5899999874
No 271
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.6e-40 Score=326.83 Aligned_cols=192 Identities=22% Similarity=0.303 Sum_probs=155.3
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe-CCCCCC-CccH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP-QDPVLF-SGTL 430 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~-Q~~~LF-~gTI 430 (597)
+++|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 46999999999999999999999999999999999987 5789999999987653 346788999997 666776 5799
Q ss_pred HhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 431 RKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 431 ~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
+||+.+.. ..+.++..+.++ +.++. .|++.........||||||||++||||++.+|++|||||||++||+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~-~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLD-----ELSEL-LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99996531 233333322211 11221 1333333334567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 508 KTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 508 ~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 999999999998753 6899999999998865 89999999999975
No 272
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=360.81 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+++||+++|++ +++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++...+. +.+|++|+
T Consensus 4 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPG-VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECC-EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 3899999999964 56999999999999999999999999999999999998 578999999999876543 45688999
Q ss_pred EEeCCCCCCCc-cHHhhcccCC-----C-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFE-----K-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~-----~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
||||++.+|.+ |++||+.++. . .+..+..+ .+.++++.+ |++.........||||||||++|||||+
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL-GVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc-CCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 99999999875 9999998642 1 12222111 122333332 4433334456789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999998874 36899999999999865 99999999999986
No 273
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-39 Score=357.82 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHh-cCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLR-SNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr-~~I~ 417 (597)
.|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++...+...++ ..++
T Consensus 11 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999964 56999999999999999999999999999999999987 5789999999999887766654 5799
Q ss_pred EEeCCCCCCCc-cHHhhcccCCCCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEKYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
||||++.+|.. |++||+.++.... ++++.++++.. |++.........||||||||++|||||+.+|
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL----------GCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc----------CCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998874 9999998742211 12233333322 3433344556789999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999988743 6899999999999865 99999999999987
No 274
>KOG0060|consensus
Probab=100.00 E-value=7.2e-37 Score=321.88 Aligned_cols=470 Identities=15% Similarity=0.154 Sum_probs=298.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHH----HHHHHHHHHHHHHHHHHHHH
Q psy1502 67 GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRI----LNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l----~~rit~D~~~i~~~~~~~~~ 142 (597)
..++.++++...+..+..+.......+...++.+.+++++++- ..||.=.+.++. =.|+++|++.....+.....
T Consensus 126 ~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~-~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s 204 (659)
T KOG0060|consen 126 FKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKG-FTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYS 204 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhcc-ceEEEecccccccCChHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444555555556666666667777777777776654 334432222222 36899999987776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLY-LFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAA 221 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e 221 (597)
+++.+++.++....-++...+|...+.+..-+ +...+.+.+.+..-+....+++...+..-.-.+...+.+.|--|+.+
T Consensus 205 ~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~ 284 (659)
T KOG0060|consen 205 NLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGG 284 (659)
T ss_pred hhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccC
Confidence 66666555554444444444444433332222 22233333333222222222222333333334455677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----H-HhhhhHHHH----HHHHHHHH
Q psy1502 222 KILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFF----F----F-ADIGGKVGL----AVTQTMTL 288 (597)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~-~~~~g~i~~----~~~~~~~~ 288 (597)
+.+....++..+..............|+.++.+++..+ ..++.++.. + . ..+...+.. -..++..+
T Consensus 285 ~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Yl-g~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~L 363 (659)
T KOG0060|consen 285 QVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYL-GGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYL 363 (659)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHH
Confidence 77766666555544443333333444444444433311 111100000 0 0 111111111 11222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----C--C-C------CCCCCCC-----CCCCCCCCCcccEEEEeeEEEe
Q psy1502 289 MGVVQWAMRQAAEVENHMISVKRLVEYTKL----E--P-E------GNLSPNY-----EDENEIWPVLGKIEFQNTNVRY 350 (597)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~----~--~-~------~~~~~~~-----~~~~~~~~~~~~I~f~nVsf~Y 350 (597)
+..+..+......+.+-.+-..||-|+.+. . . + ...+... ......++....|+|++|+++=
T Consensus 364 i~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~t 443 (659)
T KOG0060|consen 364 ISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLST 443 (659)
T ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecC
Confidence 444444444444444444555666665431 1 0 0 0000000 0112234445679999999999
Q ss_pred CC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc
Q psy1502 351 LS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428 (597)
Q Consensus 351 ~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g 428 (597)
|+ ++.+.+|+||+|+.|+.+.|.||||||||+|++.|.||+| .+|.+.--...- -+.+-||||.|+.=.|
T Consensus 444 Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~G 515 (659)
T KOG0060|consen 444 PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLG 515 (659)
T ss_pred CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEecCCCCcccc
Confidence 87 5557778999999999999999999999999999999998 789997522111 0458899999999999
Q ss_pred cHHhhcccC--------CCCChHHHHHHHHHhcHHHHHHhcCCCchhhh-CCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 429 TLRKNLDPF--------EKYPDYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 429 TI~eNI~~~--------~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vg-e~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|+||-+.+- +.++|+++.+-++.+++.+.++..+|+|+++- +=..-||+||+||+|.||-+|.+|++-|||
T Consensus 516 TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 516 TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD 595 (659)
T ss_pred chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee
Confidence 999999642 24789999999999999988777799998776 447899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
|+|||+|.+.|..+.+-+++. +.|.|.|.||-|.-+.-|.++-|+.+
T Consensus 596 E~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 596 ECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred chhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 999999999999999999886 89999999999999999999999874
No 275
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=357.87 Aligned_cols=205 Identities=19% Similarity=0.294 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++...+... .+++|+|
T Consensus 5 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 5 LQLKGIDKAFPG-VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EEEeeeEEEeCC-eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 899999999964 57999999999999999999999999999999999987 57899999999997665444 4678999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. -|++||+.++.. .+..+..+ .+.+.++. -|+.........+||||||||++|||||+
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLAR-LNLRFSSDKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHH-cCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 999998886 599999986421 11222111 11233333 24433334445689999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999998864 36899999999999864 99999999999987
No 276
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=9.1e-40 Score=318.00 Aligned_cols=191 Identities=20% Similarity=0.238 Sum_probs=159.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ ..++++++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRGE-RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 478999999964 56999999999999999999999999999999999998 57899999999988765 4567899999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++.+|. .|++||+.+.. ...++++.++++..++.++. ......||||||||++||||++++|++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE----------DLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh----------cCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 69999997532 11133466666666665443 233468999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
+||||||++||+.+...+.+.|.++. .+.|+|++||+...+ .||+.+.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 99999999999999999999998863 478999999998543 3466554
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=358.54 Aligned_cols=206 Identities=22% Similarity=0.340 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~ 417 (597)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++...+... .+++|+
T Consensus 5 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGP-VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 3899999999964 56999999999999999999999999999999999987 57899999999998877654 456899
Q ss_pred EEeCCCCCCCc-cHHhhcccCCC-------C---ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEK-------Y---PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~-------~---~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
||||++.+|.. |++||+.++.. . +.++..+ .+.+.++. -|++........+||||||||++||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLR-VGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHH-cCCCCCcccchhhCCHHHHHHHHHH
Confidence 99999998874 99999976321 0 1111111 11222222 2443334445568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+.+|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999988753 6899999999999975 99999999999986
No 278
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.2e-40 Score=327.22 Aligned_cols=188 Identities=27% Similarity=0.331 Sum_probs=153.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHHhcCcEEEeCCCC-CCC--
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV-LFS-- 427 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~-LF~-- 427 (597)
+|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+||.++... +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 5889999999999999999999999999999999874 589999999998754 223468999999995 444
Q ss_pred ccHHhhcccC----CCCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 428 GTLRKNLDPF----EKYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 428 gTI~eNI~~~----~~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
.|+.+|+.+. .... ++++.++++..++.+ .++........||||||||++||||++++|+||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------hHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5899997532 1111 122333333333221 1245667778999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999998764 689999999999996 599999999999987
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=356.77 Aligned_cols=203 Identities=22% Similarity=0.356 Sum_probs=169.1
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcEEEe
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~~V~ 420 (597)
++|++++|++ +++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. +.+++.++|||
T Consensus 1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 4789999964 56999999999999999999999999999999999997 578999999999976654 44678899999
Q ss_pred CCCCCCC-ccHHhhcccCC----C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 421 QDPVLFS-GTLRKNLDPFE----K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 421 Q~~~LF~-gTI~eNI~~~~----~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|++.+|. .|++||+.++. . .+.++..+ .+.+.++. .|++.........||||||||++|||||+++|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDE-LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHH-cCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 9998775 59999997642 1 12222221 12233333 25555555667899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998874 36899999999999864 99999999999987
No 280
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=347.64 Aligned_cols=203 Identities=27% Similarity=0.340 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCC------C----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEccee--CCC
Q psy1502 340 KIEFQNTNVRYLS------G----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDID--TED 406 (597)
Q Consensus 340 ~I~f~nVsf~Y~~------~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~d--i~~ 406 (597)
-++++|++..|.. . ..+++||||++++||++||||+||||||||+++|+|+. |++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 3789999999952 1 25899999999999999999999999999999999998 468999999987 333
Q ss_pred CChHHHhcCcEEEeCCCCCC---CccHHhhccc----CCCCC----hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCC
Q psy1502 407 VPLSKLRSNISIIPQDPVLF---SGTLRKNLDP----FEKYP----DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTN 474 (597)
Q Consensus 407 ~~~~~lr~~I~~V~Q~~~LF---~gTI~eNI~~----~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~ 474 (597)
-....+|+++-+|+|||+-. ..||+++|.- ..... .+.+.+.++.+ |+.. ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V----------gL~~~~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV----------GLPPEFLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc----------CCCHHHHhcCchh
Confidence 33556788999999999843 3799999852 11111 11233333333 3333 35566789
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
||||||||+||||||..+|++||+||||||||+-+.+.|.+.|.++.+ +.|.|+|||+++.++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988765 5899999999999986 9999999999999
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
|
T Consensus 510 E 510 (539)
T COG1123 510 E 510 (539)
T ss_pred E
Confidence 9
No 281
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-39 Score=321.95 Aligned_cols=199 Identities=20% Similarity=0.283 Sum_probs=158.4
Q ss_pred EEEEeeEEEeCC------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEc--ce--eCCCCCh
Q psy1502 341 IEFQNTNVRYLS------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKID--DI--DTEDVPL 409 (597)
Q Consensus 341 I~f~nVsf~Y~~------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~id--g~--di~~~~~ 409 (597)
|+++||+++|+. .+++|+|+||+|++||.++|+|+||||||||+++|+|++ |++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999953 146999999999999999999999999999999999998 478999998 42 6666665
Q ss_pred HH---H-hcCcEEEeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHH
Q psy1502 410 SK---L-RSNISIIPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQR 480 (597)
Q Consensus 410 ~~---l-r~~I~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQr 480 (597)
.. + ++.++||||++.+|. .|++||+.+. ...+.++..+ .+.++++.+ |++. .....+..||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL-NIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-CCchhhhhCCcccCCHHHH
Confidence 43 2 467999999999886 5999999642 1222222111 112222222 3322 12345779999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVM 545 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl 545 (597)
||++|||||+++|++|||||||++||+++...+.+.|+++.. ++|+|+|||++..+. .||+++.+
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999988753 789999999999886 59999876
No 282
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-39 Score=362.89 Aligned_cols=207 Identities=27% Similarity=0.385 Sum_probs=170.5
Q ss_pred cEEEEeeEEEeCC----------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCCh
Q psy1502 340 KIEFQNTNVRYLS----------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 340 ~I~f~nVsf~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~ 409 (597)
-|+++||+++|+. ++++|+|+||+|++|+++||+||||||||||+++|+|+++++|+|.+||.++...+.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 4899999999952 356999999999999999999999999999999999998889999999999987664
Q ss_pred H---HHhcCcEEEeCCC--CCCC-ccHHhhcccCC-----CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCCh
Q psy1502 410 S---KLRSNISIIPQDP--VLFS-GTLRKNLDPFE-----KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSV 477 (597)
Q Consensus 410 ~---~lr~~I~~V~Q~~--~LF~-gTI~eNI~~~~-----~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSG 477 (597)
. .+|++|+||||++ .+|. .|++||+.++. ..+..+..+ .+.++++. -|+. .........|||
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ-----QVIAVMEE-VGLDPETRHRYPAEFSG 428 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH-----HHHHHHHH-cCCCHHHHhcCCccCCH
Confidence 3 3577899999998 3665 59999997531 122111111 11233332 2443 234556679999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998753 6899999999999875 99999999999987
No 283
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=301.90 Aligned_cols=201 Identities=26% Similarity=0.382 Sum_probs=172.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+++.+++.+|++...+++||||+++.||.+||.|++||||||+++.|..|. |++|.|+|||.|.... +...|++||++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGVl 80 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGVL 80 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhccee
Confidence 678999999977555899999999999999999999999999999999976 8899999999999865 56689999999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+-+.-|+. .|.+|||.|+. +.++.+ +.+.-+..++.+ .+..+-.+||-|+|||++|||||.+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~----------~~~rRv~~~S~G~kqkV~iARAlvh 150 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE----------YLDRRVGEFSTGMKQKVAIARALVH 150 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH----------HHHHHHhhhchhhHHHHHHHHHHhc
Confidence 98888886 59999998742 344443 333333333333 3333444799999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||+|+|||||||+||.-+-..+++-+.++.. ++++|+-||-++.++ -||+++++.+|++|.
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~ 213 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL 213 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE
Confidence 9999999999999999999999999998876 899999999999998 699999999999998
No 284
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-39 Score=356.04 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+...+++.++||
T Consensus 4 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 4 LQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 899999999964 45999999999999999999999999999999999987 5789999999988777777778889999
Q ss_pred eCCCCC---------CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 420 PQDPVL---------FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 420 ~Q~~~L---------F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+|++.+ +..|+++|+.++. ..++++.++++..++ +.........||||||||++|||||+
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l----------~~~~~~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGI----------TALLDRRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCC----------HhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 998753 2458899886531 122344444444443 33344556799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||++..+.+ ||+|++|++|+++.
T Consensus 152 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 152 SEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 6899999999999865 99999999999987
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.2e-39 Score=355.50 Aligned_cols=205 Identities=21% Similarity=0.347 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeCCCCChHH-HhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDTEDVPLSK-LRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di~~~~~~~-lr~~I 416 (597)
|+++|++++|++ +++|+|+||++++|+++||+||||||||||+++|+|+++ ++|+|.++|.++...+... +++.|
T Consensus 2 l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFGG-VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeCC-eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 689999999964 569999999999999999999999999999999999975 4899999999998877544 46789
Q ss_pred EEEeCCCCCCC-ccHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~LSGGQrQRIaIAR 487 (597)
+||||++.+|. .|++||+.++.. .+.++..+ .+.+.++.+ |++... ......||||||||++|||
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL-QLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc-CCCCCcccCchhhCCHHHHHHHHHHH
Confidence 99999998887 499999976421 11122111 122333332 332221 1234589999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999988643 6899999999999875 99999999999987
No 286
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-39 Score=314.08 Aligned_cols=187 Identities=22% Similarity=0.301 Sum_probs=156.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +.++ ++||+|++|+.+||+|++|||||||+++|+|++ |++|+|.+||.++.+.+ ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYI 75 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEec
Confidence 789999999964 4455 599999999999999999999999999999987 57899999999987543 4569999
Q ss_pred eCCCCC-CCccHHhhcccCCC--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVL-FSGTLRKNLDPFEK--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+|++.+ |+.|++||+.+... ..++++.++++..++.+ .....+.+||||||||++||||++++|++|
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD----------LLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh----------hhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 998754 67899999976321 13344555555555443 344557799999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhhcCEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKK-FADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~-~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
||||||++||+++...+.+.|++. .+++|+|++||+++.++.||-+.
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999753 35799999999999999999763
No 287
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=363.93 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=169.0
Q ss_pred cEEEEeeEEEeCC----------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC
Q psy1502 340 KIEFQNTNVRYLS----------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP 408 (597)
Q Consensus 340 ~I~f~nVsf~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~ 408 (597)
-|+++||+++|+. ..++|+||||+|++||++||||+||||||||+++|+|+. |++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 4899999999962 136999999999999999999999999999999999987 57899999999998775
Q ss_pred hH---HHhcCcEEEeCCCC--CCC-ccHHhhcccC---CCC-ChH----HHHHHHHHhcHHHHHHhcCCCc-hhhhCCCC
Q psy1502 409 LS---KLRSNISIIPQDPV--LFS-GTLRKNLDPF---EKY-PDY----VLWTALQEVELKDMIMEGAGLN-MTVYEGGT 473 (597)
Q Consensus 409 ~~---~lr~~I~~V~Q~~~--LF~-gTI~eNI~~~---~~~-~~e----~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~ 473 (597)
.. .+|++|+||+|+++ ++. .|+.+|+.+. ... +.+ ++.++++.. |++ ........
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~----------gL~~~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV----------GLLPEHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc----------CCCHHHhhCCcc
Confidence 43 46789999999984 665 6999998642 111 221 222233322 443 23445567
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
.||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988754 6899999999999975 999999999999
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
++
T Consensus 543 v~ 544 (623)
T PRK10261 543 VE 544 (623)
T ss_pred EE
Confidence 98
No 288
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.5e-39 Score=311.79 Aligned_cols=174 Identities=26% Similarity=0.354 Sum_probs=143.9
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC--CChHHHhcCcEEEeCCC--CCC
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED--VPLSKLRSNISIIPQDP--VLF 426 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~--~~~~~lr~~I~~V~Q~~--~LF 426 (597)
+++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.. .....+++.++||+|++ .+|
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4467999999999999999999999999999999999998 478999999999852 23456788999999998 588
Q ss_pred CccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 427 SGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 427 ~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+.|++||+.+.. ..+++ ++.++++..++ +.........||||||||++|||||+++|++||||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA----------SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc----------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 899999997631 23332 23344444443 33344455789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT 535 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst 535 (597)
|||++||+.+...+.+.|.++.+ ++|+|+|||++..
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999988754 6899999999864
No 289
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.2e-39 Score=358.43 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=167.6
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChH
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLS 410 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~ 410 (597)
-|+++||+++|++ .+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 3899999999963 2479999999999999999999999999999999999975 489999999999887654
Q ss_pred H---Hh-cCcEEEeCCCC--CCC-ccHHhhcccC----CCCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCC
Q psy1502 411 K---LR-SNISIIPQDPV--LFS-GTLRKNLDPF----EKYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF 475 (597)
Q Consensus 411 ~---lr-~~I~~V~Q~~~--LF~-gTI~eNI~~~----~~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~L 475 (597)
. +| ++|+||||++. ++. .|+++|+.+. ...+. +++.++++..++.++ ..........|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA-------AKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------HHHHhhCCccc
Confidence 3 34 58999999985 444 5899998531 12222 223334433333211 11234556799
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998875 36899999999999875 99999999999987
No 290
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-39 Score=320.55 Aligned_cols=205 Identities=27% Similarity=0.364 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~~ 411 (597)
++++|++.+|... ..+++||||++++||++||||.|||||||+.+.|+|+.| .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999532 369999999999999999999999999999999999875 2599999999999999875
Q ss_pred H---h-cCcEEEeCCCC-CCC--ccHHhhcc----cCCCC-Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCC
Q psy1502 412 L---R-SNISIIPQDPV-LFS--GTLRKNLD----PFEKY-PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF 475 (597)
Q Consensus 412 l---r-~~I~~V~Q~~~-LF~--gTI~eNI~----~~~~~-~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~L 475 (597)
+ | +.||+|+|||. =|| -||.+-+. ..... +. ++..++++.+++.+- +..+..-...|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~-------~~~~~~YPhel 154 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP-------ERRLKSYPHEL 154 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH-------HHHHhhCCccc
Confidence 4 3 48999999986 233 35555542 21122 12 234445555554322 22344556899
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||+.||-||+.+|++||-||||+|||..+.+.|.+-|+++.+ +.|+|+|||++..+.. ||||+||..|+|||
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 99999999999999999999999999999999999999999988875 7899999999999865 99999999999999
No 291
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=303.69 Aligned_cols=206 Identities=23% Similarity=0.351 Sum_probs=176.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
++++|++-.|.. -++|++|||++++||.++++||+|+|||||++.|+|+.+ .+|+|.++|.|+...+++.. |.-|+|
T Consensus 4 L~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 4 LEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred eeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 789999999964 579999999999999999999999999999999999986 58999999999999987764 667999
Q ss_pred EeCCCCCCC-ccHHhhcccCCCC-ChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEKY-PDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~~-~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|||.-.+|. -|++|||..+... .+++-.+ .. -|.+-++ .-+......+|.+|||||+|-+||||||..+|++
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~-~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RD-LEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhccccccccc----cc-HHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 999999997 6999999875321 1111111 01 1233333 5566677888999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|+|||||.+|-|.--+.|.+.|+++.+ +.|++.|-++..... -+||-|||++|+|+.
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~ 217 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL 217 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE
Confidence 999999999999999999999999875 569999999999876 599999999999997
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-39 Score=361.00 Aligned_cols=207 Identities=24% Similarity=0.353 Sum_probs=166.1
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCC----------
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTE---------- 405 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~---------- 405 (597)
-|+++|++++|+. ..++|+||||++++||++||||+||||||||+++|+|+++ .+|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 4899999999953 2469999999999999999999999999999999999984 6899999998552
Q ss_pred CCCh---HHHh-cCcEEEeCCC--CCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCC---chhhhCC
Q psy1502 406 DVPL---SKLR-SNISIIPQDP--VLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGL---NMTVYEG 471 (597)
Q Consensus 406 ~~~~---~~lr-~~I~~V~Q~~--~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~Gl---dT~vge~ 471 (597)
+.+. ..+| +.||||+|+| .++. .|++||+.++. ..+..+..+. +.+.++. -|+ +......
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~gL~~~~~~~~~~ 165 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVE-----AKRMLDQ-VRIPEAQTILSRY 165 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-CCCCChhhHHhCC
Confidence 1222 2334 5799999998 5776 59999997531 2222221111 1122222 234 2345566
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCC
Q psy1502 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSG 548 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G 548 (597)
...||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G 245 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245 (623)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCC
Confidence 789999999999999999999999999999999999999999999998753 7899999999999865 9999999999
Q ss_pred eEEE
Q psy1502 549 VAVV 552 (597)
Q Consensus 549 ~Ive 552 (597)
+|++
T Consensus 246 ~i~~ 249 (623)
T PRK10261 246 EAVE 249 (623)
T ss_pred eecc
Confidence 9997
No 293
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.6e-38 Score=358.86 Aligned_cols=190 Identities=21% Similarity=0.299 Sum_probs=159.9
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C--CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-cc
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V--EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GT 429 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~--~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gT 429 (597)
+++|+|+|+++++||++||+||||||||||+++|+|+.+ . +|+|.+||.++.. .++++++||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 469999999999999999999999999999999999864 3 7999999998742 45678999999999996 59
Q ss_pred HHhhcccCC------CCChHHHHHHHHHhcHHHHHHhc---CCCchhhhCC-CCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 430 LRKNLDPFE------KYPDYVLWTALQEVELKDMIMEG---AGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 430 I~eNI~~~~------~~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~-G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
++||+.+.. ..++++..+. +++.++.+ +..||.+|+. ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999997531 2333332221 23444442 3458889864 6789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchh-H-hhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHT-I-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlst-i-~~~D~Iivl~~G~Ive 552 (597)
||||+||+.++..+.+.|+++. +++|+|+++|+++. + +.||+|++|++|+++.
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~ 287 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE
Confidence 9999999999999999999876 48999999999984 4 5699999999999987
No 294
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=359.79 Aligned_cols=207 Identities=22% Similarity=0.327 Sum_probs=177.5
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHH---
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL--- 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~l--- 412 (597)
.|+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++...+...+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 3899999999963 2469999999999999999999999999999999999984 78999999999999887654
Q ss_pred -hcCcEEEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 413 -RSNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 413 -r~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
|+.++|++|++.+|+ .|+.||+.+.. ..+.++ ....+.++++.+ |++..+......|||||+||++|||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l-gl~~~~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL-GLEDRVEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC-CChhhhcCCcccCCHHHHHHHHHHH
Confidence 578999999999997 59999997521 112111 112233444443 6666677778899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||++..+..||++++|++|++++
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR 223 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998875 4799999999999999999999999999998
No 295
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=319.79 Aligned_cols=204 Identities=29% Similarity=0.431 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCC----------CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCCh
Q psy1502 340 KIEFQNTNVRYLSG----------PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~----------~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~ 409 (597)
-++.+||...||-. -.+.++|||+.++||++||||.||||||||-..|+||.+++|+|.++|.|+..++.
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~ 355 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSR 355 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccCh
Confidence 47899999999521 23799999999999999999999999999999999999988999999999999986
Q ss_pred HH---HhcCcEEEeCCCC-CCC--ccHHhhcccC----C-CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCC
Q psy1502 410 SK---LRSNISIIPQDPV-LFS--GTLRKNLDPF----E-KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTN 474 (597)
Q Consensus 410 ~~---lr~~I~~V~Q~~~-LF~--gTI~eNI~~~----~-~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~ 474 (597)
.. +|+++-+|+|||| -++ .||.+=|.-| + ..+ ++.+.+|++.+|++.-.. ..-...
T Consensus 356 ~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r---------~RYPhE 426 (534)
T COG4172 356 KEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR---------NRYPHE 426 (534)
T ss_pred hhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh---------hcCCcc
Confidence 65 6899999999998 222 5776666421 1 222 455777887777754332 233578
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
+|||||||||||||++-+|++++|||||||||-.-...|.+-|+++-+ +-+-++|+|+|..++. ||+++||.+|+||
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV 506 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV 506 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe
Confidence 999999999999999999999999999999999999999999887643 6799999999999986 9999999999999
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
|
T Consensus 507 E 507 (534)
T COG4172 507 E 507 (534)
T ss_pred e
Confidence 9
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=351.31 Aligned_cols=207 Identities=23% Similarity=0.313 Sum_probs=168.8
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCCh-HHHhc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPL-SKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~-~~lr~ 414 (597)
-|+++||+++|+. +.++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999952 3569999999999999999999999999999999999974 68999999999875543 34677
Q ss_pred CcEEEeCCC---CCCC-ccHHhhcccCC--CC------ChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHH
Q psy1502 415 NISIIPQDP---VLFS-GTLRKNLDPFE--KY------PDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQ 481 (597)
Q Consensus 415 ~I~~V~Q~~---~LF~-gTI~eNI~~~~--~~------~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQ 481 (597)
.|+||||++ .+|. .|+.||+.++. .. +.++. ...+.++++.+ |++. ........|||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL-KVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc-CccCCCcccccccCCHHHHH
Confidence 899999996 3664 69999997531 11 11111 11223444432 4432 345556799999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||++++|++|+|+.
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998764 47899999999999865 99999999999986
No 297
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-38 Score=286.87 Aligned_cols=206 Identities=23% Similarity=0.256 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---H
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---L 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---l 412 (597)
-|++++++..-++ .-.||++|+|.|++||.+|||||||||||||+-++.|+- |++|+|.+.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 3788888887743 236999999999999999999999999999999999997 68899999999999998554 4
Q ss_pred h-cCcEEEeCCCCCCC-ccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 413 R-SNISIIPQDPVLFS-GTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 413 r-~~I~~V~Q~~~LF~-gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
| +++|+|+|...|.. .|-.||...- .+...+....| .++.+. -|+.-.+..-..+||||+.||+|||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A------~~lL~~-vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA------KALLEA-VGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHH------HHHHHH-hCcccccccCccccCchHHHHHHHH
Confidence 5 68999999999884 7999998631 12122211111 122222 3666667777889999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+.-.|+||+-||||-+||.+|...|-+-+..+-. +.|.++|||+.+...+|||++-|.+|+|++
T Consensus 159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999998876543 679999999999999999999999999985
No 298
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.9e-38 Score=312.35 Aligned_cols=194 Identities=20% Similarity=0.209 Sum_probs=151.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+.++|++..|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~-- 94 (224)
T cd03220 23 LGILGRKGEVGE-FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG-- 94 (224)
T ss_pred hhhhhhhhhcCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc--
Confidence 667888888854 57999999999999999999999999999999999997 5789999999986421 11111
Q ss_pred eCCCCCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+..+.|++||+.+.. ..+.++..+.+ .+..+. .|++.........||||||||++||||++++|++|
T Consensus 95 ----~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 95 ----FNPELTGRENIYLNGRLLGLSRKEIDEKI-----DEIIEF-SELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred ----CCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 223579999997531 22222222211 111111 23433344445689999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999988754 589999999999986 599999999999975
No 299
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=339.64 Aligned_cols=205 Identities=27% Similarity=0.366 Sum_probs=168.4
Q ss_pred cEEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C----CceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V----EGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~----~G~I~idg~di~~~~~~~ 411 (597)
-++++|++..|... .++++||||+|.+||.+||||.|||||||++..|+|+.| . +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 38999999999422 259999999999999999999999999999999999864 2 799999999999998766
Q ss_pred Hh----cCcEEEeCCCC-CCC--ccHHhhcc----cCCCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCC
Q psy1502 412 LR----SNISIIPQDPV-LFS--GTLRKNLD----PFEKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476 (597)
Q Consensus 412 lr----~~I~~V~Q~~~-LF~--gTI~eNI~----~~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LS 476 (597)
+| +.|+||||+|+ .+| .||.+-|. .....+ .++..+.++.+++.+-.. . ..-...||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~-------~-~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-------R-DRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh-------h-ccCCcccC
Confidence 53 58999999987 666 47776663 122222 223444444444422111 1 33578999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||+.||+||..||++||+||||.|||+.+.+.|.+.|+++. .+.++|+|||.+..+.. ||||+||++|++||
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999887 47899999999999976 99999999999999
No 300
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.4e-38 Score=350.57 Aligned_cols=205 Identities=26% Similarity=0.390 Sum_probs=163.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEc-----------------
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKID----------------- 400 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~id----------------- 400 (597)
|+++|++++|++ +++|+|+||++++|+++||+||||||||||+++|+|+. |++|+|.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDG-KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECC-eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 478999999964 57999999999999999999999999999999999984 678999997
Q ss_pred ------ceeCC-------CCC---hHHHhcCcEEEeCC-CCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHH
Q psy1502 401 ------DIDTE-------DVP---LSKLRSNISIIPQD-PVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIM 459 (597)
Q Consensus 401 ------g~di~-------~~~---~~~lr~~I~~V~Q~-~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~ 459 (597)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.+. ...+.++..+ .+.+.++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~ 154 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDLIE 154 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHH
Confidence 33331 111 13467889999998 56776 5999999752 1222222111 1112222
Q ss_pred hcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh
Q psy1502 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM 537 (597)
Q Consensus 460 ~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~ 537 (597)
. -|++.........||||||||++|||||+.+|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.
T Consensus 155 ~-~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 155 M-VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred H-cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 2 2444444556679999999999999999999999999999999999999999999988743 689999999999986
Q ss_pred h-cCEEEEEeCCeEEE
Q psy1502 538 D-SDKVLVMDSGVAVV 552 (597)
Q Consensus 538 ~-~D~Iivl~~G~Ive 552 (597)
. ||+|++|++|+++.
T Consensus 234 ~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 234 DLSDKAIWLENGEIKE 249 (520)
T ss_pred HhcCEEEEEeCCEEee
Confidence 5 99999999999986
No 301
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-38 Score=347.47 Aligned_cols=204 Identities=17% Similarity=0.292 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+++|+++.|. .+|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+. ..+++.|+
T Consensus 265 ~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 499999999873 3899999999999999999999999999999999987 578999999999876543 45678899
Q ss_pred EEeCCC---CCCC-ccHHhhcccCCCC------------ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHH
Q psy1502 418 IIPQDP---VLFS-GTLRKNLDPFEKY------------PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQR 480 (597)
Q Consensus 418 ~V~Q~~---~LF~-gTI~eNI~~~~~~------------~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQr 480 (597)
||||++ .+|. -|++||+.++... +..+ ....+.+.++.+ |+. -........||||||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL-ALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc-CCCCCCccCccccCChHHH
Confidence 999984 5775 5999999764211 1111 111223333332 443 234455568999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++. .++|+|+|||++..+. .||+|++|++|++++
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998864 4789999999999886 599999999999987
No 302
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-38 Score=360.14 Aligned_cols=204 Identities=17% Similarity=0.265 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeC--------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC----CceEEEcceeCCCC
Q psy1502 340 KIEFQNTNVRYL--------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----EGVIKIDDIDTEDV 407 (597)
Q Consensus 340 ~I~f~nVsf~Y~--------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~----~G~I~idg~di~~~ 407 (597)
+++|.++. +++ +++++|+|+|+++++||.+||+||||||||||+++|+|..++ +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46677776 552 246799999999999999999999999999999999997642 699999999875
Q ss_pred ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC------CCChHHHHHHHHHhcHHHHHHh--c-CCCchhhhCC--CCCC
Q psy1502 408 PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE------KYPDYVLWTALQEVELKDMIME--G-AGLNMTVYEG--GTNF 475 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~------~~~~e~i~~a~~~a~l~~fI~~--l-~GldT~vge~--G~~L 475 (597)
...+|+.++||+|++.+|+ .|++|||.++. +.+.++ +...+++.++. + +..||.+|+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 3568899999999999996 59999997532 122232 22233455554 3 5689999985 4789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--HhhcCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i~~~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.. ++|+|+++|+++. ...||++++|++|+++.
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999999999999999999999999999999999999998764 7999999999963 56799999999999998
No 303
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-38 Score=351.79 Aligned_cols=207 Identities=24% Similarity=0.393 Sum_probs=165.7
Q ss_pred cEEEEeeEEEeCC----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEc-cee---CCCCC--
Q psy1502 340 KIEFQNTNVRYLS----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKID-DID---TEDVP-- 408 (597)
Q Consensus 340 ~I~f~nVsf~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~id-g~d---i~~~~-- 408 (597)
-|+++||+++|++ .+++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999952 246999999999999999999999999999999999987 578999996 643 33332
Q ss_pred -hHHHhcCcEEEeCCCCCCC-ccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCch-----hhhCCCCCCChhH
Q psy1502 409 -LSKLRSNISIIPQDPVLFS-GTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNM-----TVYEGGTNFSVGQ 479 (597)
Q Consensus 409 -~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT-----~vge~G~~LSGGQ 479 (597)
...+|++|+||||++.+|. .|++||+.+.. ....++.. ..+.++++.+ |++. ........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~-~l~~~~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV-GFDEEKAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC-CCCCccchhhhhCChhhCCHHH
Confidence 2345778999999998887 59999997421 11111111 1112333332 3321 3455567899999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||++..+.. ||+|++|++|++++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988753 6899999999999875 99999999999987
No 304
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-38 Score=309.86 Aligned_cols=174 Identities=28% Similarity=0.388 Sum_probs=150.8
Q ss_pred EEEEeeEEEeCCC--------CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLSG--------PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~--------~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
++.+|++..|+.. ..+++||||+|++||++||||.||||||||.++|+||+ |++|+|.++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 7899999999532 25899999999999999999999999999999999998 58999999999988766
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
.....+++.+.++.+++.+.. .......|||||||||+|||||.-
T Consensus 82 --------------------------~~~~~~~v~elL~~Vgl~~~~---------~~ryPhelSGGQrQRi~IARALal 126 (268)
T COG4608 82 --------------------------KEERRERVLELLEKVGLPEEF---------LYRYPHELSGGQRQRIGIARALAL 126 (268)
T ss_pred --------------------------hhHHHHHHHHHHHHhCCCHHH---------hhcCCcccCchhhhhHHHHHHHhh
Confidence 222345677777777764322 233457899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++++||||||||.-.++.|.+-|.++.+ +-|.++|||+++.+++ ||||.||..|+|||
T Consensus 127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 9999999999999999999999988877643 6899999999999997 99999999999999
No 305
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.1e-38 Score=378.28 Aligned_cols=203 Identities=20% Similarity=0.307 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeC---CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHH
Q psy1502 340 KIEFQNTNVRYL---SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~---~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~l 412 (597)
.++++||+++|+ +++++|+|||+++++|+.+||+||||||||||+++|+|+.+ ++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999995 34579999999999999999999999999999999999864 5699999999985 257
Q ss_pred hcCcEEEeCCCC-CCCccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 413 RSNISIIPQDPV-LFSGTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 413 r~~I~~V~Q~~~-LF~gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
|+.+|||+|++. ++..|++||+.+. .+.++++ +.++++..++. +-.|+.+|+.|.+|||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~------~~~d~~v~~~~~~LSgGqrq 908 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME------SYADAVVGVPGEGLNVEQRK 908 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh------hhCCCeeCCCCCCCCHHHhh
Confidence 899999999876 4567999999752 1233333 33444444332 34799999999999999999
Q ss_pred HHHHHHHHccCCC-EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH--hhcCEEEEEeCC-eEEE
Q psy1502 482 LICLARAIVRNNV-ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI--MDSDKVLVMDSG-VAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~-ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti--~~~D~Iivl~~G-~Ive 552 (597)
|++|||||+.+|+ ||+||||||+||+.+...|++.|+++. +++|+|+++|+++.. ..||++++|++| ++++
T Consensus 909 Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 909 RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 9999999999997 999999999999999999999999874 579999999999974 579999999997 9988
No 306
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.2e-38 Score=311.30 Aligned_cols=175 Identities=26% Similarity=0.373 Sum_probs=145.7
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCC---CCccHHhhcccC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL---FSGTLRKNLDPF 437 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~L---F~gTI~eNI~~~ 437 (597)
|+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++. ..+++++||||++.+ |+.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999987 57899999999864 357789999999976 457999998653
Q ss_pred C---------C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC
Q psy1502 438 E---------K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506 (597)
Q Consensus 438 ~---------~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 506 (597)
. . ..++++.++++..++.+ ........||||||||++||||++++|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTE----------LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCch----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 1 0 11223455555554433 2333455799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 507 PKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 507 ~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+.+...+.+.|.++. +++|+|++||+++.+. .||+|+++ +|++++
T Consensus 146 ~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~ 192 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA 192 (223)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 999999999999875 4789999999999886 59999999 799987
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.8e-37 Score=286.16 Aligned_cols=142 Identities=29% Similarity=0.499 Sum_probs=132.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++|++++|++ .++|+|+||++++||.++|+||||||||||+++|+|+++ .+|+|.+||. ..++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 478999999965 469999999999999999999999999999999999984 7899999994 579999
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|| |||||+||++||||++++|+++|||
T Consensus 69 ~~-----------------------------------------------------lS~G~~~rv~laral~~~p~illlD 95 (144)
T cd03221 69 EQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred cc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99 9999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
|||++||+.+...+.+.|+++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999987 5799999999999965 89999999996
No 308
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=330.23 Aligned_cols=190 Identities=20% Similarity=0.228 Sum_probs=155.9
Q ss_pred cEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.++++|++|+|+++ +++|+|+||+|++|+++||+||+|||||||+++|+|++ |++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 48999999999654 46999999999999999999999999999999999997 5789999999752
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCChHHHH----HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLW----TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~----~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
++++.+.+++ .|++||+.+.. ..+.++.. ++++.+ |++.........||||||||++||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~l----------gL~~~ld~~~~~LSGGQrQRVaLArA 157 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFA----------DIGKFIYQPVKTYSSGMKSRLGFAIS 157 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHc----------CChhHhhCCcccCCHHHHHHHHHHHH
Confidence 2233344443 59999997531 23333332 233333 34334455567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 L~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~ 223 (549)
T PRK13545 158 VHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223 (549)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998864 37899999999999865 99999999999987
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.1e-37 Score=342.79 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCCh-HHHhc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPL-SKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~-~~lr~ 414 (597)
-|+++|++++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+.+ .+|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4899999999942 3569999999999999999999999999999999999874 58999999999875443 45688
Q ss_pred CcEEEeCCC---CCCC-ccHHhhcccCC--CCCh-HHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDP---VLFS-GTLRKNLDPFE--KYPD-YVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~---~LF~-gTI~eNI~~~~--~~~~-e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIA 486 (597)
+|+||||++ .+|. .|+++|+.++. .... ..+........+.++++.+ |+.. ........||||||||++||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL-KVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc-CccCCCccCccccCCHHHHHHHHHH
Confidence 999999996 4665 69999997631 1100 0000000111222333332 3321 23344568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+.+|++|||||||++||+.+...+++.|.++. .+.|+|+|||+++.+.. ||++++|++|+|+.
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988764 37899999999999865 99999999999986
No 310
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3e-37 Score=344.88 Aligned_cols=199 Identities=21% Similarity=0.316 Sum_probs=163.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++ +..|+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 3899999999963467999999999999999999999999999999999987 5789999975 257999
Q ss_pred EeCCCCCCC-ccHHhhcccCC-C-----------------CCh---------HHHHHHHHHhcHHHH---HHh-c--CCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE-K-----------------YPD---------YVLWTALQEVELKDM---IME-G--AGL 464 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~-~-----------------~~~---------e~i~~a~~~a~l~~f---I~~-l--~Gl 464 (597)
|||+|.+|+ .|++||+.++. . ..+ +++.++++.+++++. +.. + .|+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 999999986 59999997531 0 011 235555555554322 111 1 344
Q ss_pred chhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE
Q psy1502 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL 543 (597)
Q Consensus 465 dT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii 543 (597)
+. ......+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||+++.+.. ||+|+
T Consensus 153 ~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 153 PP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred Cc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 32 34556799999999999999999999999999999999999999999999886 3699999999999976 89999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+++.
T Consensus 230 ~l~~g~i~~ 238 (552)
T TIGR03719 230 ELDRGRGIP 238 (552)
T ss_pred EEECCEEEE
Confidence 999999874
No 311
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-37 Score=326.81 Aligned_cols=202 Identities=22% Similarity=0.340 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
++++|++.+|++ .++|+||||++.+||..|++|.+|||||||+|+|.|.| |++|+|.+||.+..-.++.+ ...-|+.
T Consensus 9 l~~~~i~K~Fgg-V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 9 LELRGISKSFGG-VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eeeecceEEcCC-ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 789999999974 56999999999999999999999999999999999998 57899999999999777555 5567999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhc---CCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEG---AGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
|.||..|++ -||.|||-+++. .+..++.+.++ +.+..+ ...++.| .+||+||||-++|||
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~~~~~v----~~LsiaqrQ~VeIAr 158 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDIDPDTLV----GDLSIAQRQMVEIAR 158 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCChhhhh----hhCCHHHHHHHHHHH
Confidence 999999996 599999976543 23344444433 223332 1245555 479999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+..+++|||||||||+|+....+.+.+.++++. ++.++|+|||||..+.. ||||.||.||+.+.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999998888999998886 58999999999999965 99999999999988
No 312
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=306.81 Aligned_cols=187 Identities=27% Similarity=0.349 Sum_probs=163.1
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHh----cCcEEEeCCCCCCC-cc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLR----SNISIIPQDPVLFS-GT 429 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr----~~I~~V~Q~~~LF~-gT 429 (597)
-++|+||+|+.||+..|.|-||||||||+.++.||+ |+.|+|++||.|+..++...|| +++++|+|+.-||+ .|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 378999999999999999999999999999999998 5789999999999999977764 58999999999996 79
Q ss_pred HHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 430 LRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 430 I~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
|.||..||- ..+.+ ...++++.+++++|-.. ....||||++||+.|||||..||+||++|||+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~----------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK----------YPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc----------CcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 999999873 33433 35666666666665432 34689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||--....|+.|.++-+ .||+++|||+|.... -.|||..|+||+|+.
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence 99999999999999876643 689999999999874 589999999999998
No 313
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=309.91 Aligned_cols=180 Identities=21% Similarity=0.213 Sum_probs=149.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~ 431 (597)
+++|+|+||+|++|+.+||+||+|||||||+++|+|+++ .+|+|.+||. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 468999999999999999999999999999999999974 7899999984 467888887764 6999
Q ss_pred hhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 432 KNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
+|+.+. ...+.++..+.+. +.+ ...|++..+......||||||||++||||++++|+||||||||++||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~-----~~l-~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTP-----KII-EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH-----HHH-HHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 999752 1334444433221 111 1134555566677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 509 TDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 509 te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+...+.+.|.++. .++|+|++||++..+.. ||+|++|++|+|++
T Consensus 178 ~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 178 FAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 9999999998764 47899999999999865 99999999999987
No 314
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1e-37 Score=314.29 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=157.0
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEE-----------EcceeCCCCChHH
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIK-----------IDDIDTEDVPLSK 411 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~-----------idg~di~~~~~~~ 411 (597)
.||+++|+...++|+|+|+ +++|+++||+||||||||||+++|+|++ |++|+|. +||+++.+...+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 5789999755579999995 9999999999999999999999999998 5789996 8899987764443
Q ss_pred Hhc--CcEEEeCCCCCCCccHHhhcccC-CCCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 412 LRS--NISIIPQDPVLFSGTLRKNLDPF-EKYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 412 lr~--~I~~V~Q~~~LF~gTI~eNI~~~-~~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
.+. .+++++|++.+++.++.+|+... .... ++++.++++. .|++..+......||||||||++|||
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~----------~gl~~~~~~~~~~LS~G~~qrv~lar 152 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQ----------LELRHVLDRNIDQLSGGELQRVAIAA 152 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHH----------cCCchhhcCChhhCCHHHHHHHHHHH
Confidence 433 47888888777765555554321 1111 2223333333 25555566777899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++++|+++|||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+ |++++
T Consensus 153 al~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 153 ALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 99999999999999999999999999999988754 6899999999999985 99999995 55654
No 315
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-37 Score=298.92 Aligned_cols=208 Identities=24% Similarity=0.381 Sum_probs=174.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
++.+|++.+|. +-.+++||||++++||.+||+||+||||||++|+|.|+| |++|+|.++|.||...+++.. |.-|+-
T Consensus 5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 57899999995 456999999999999999999999999999999999999 578999999999999997775 456999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC------------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK------------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~------------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
-+|.+-+|. .|+.||+..+.. ....+-.++.++|. +.++. -|++-.-.+...+||+||+.|+-|
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~--~~Le~-vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--ELLEF-VGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHH--HHHHH-cCCchhhcchhhcCChhHhHHHHH
Confidence 999999997 599999864311 11011122222221 22221 467777778888999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||..+|++|+||||.++|.++....+.+.|+++.+ +.|+++|-|+++.+.+ ||||+||+.|+++.
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 9999999999999999999999999999999999875 4899999999999986 99999999999876
No 316
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=341.15 Aligned_cols=201 Identities=19% Similarity=0.307 Sum_probs=165.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+++|+++ ++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+. +.+|++|+
T Consensus 257 ~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 489999984 3799999999999999999999999999999999987 578999999999987664 34678899
Q ss_pred EEeCCC---CCC-CccHHhhcccCCC---------CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDP---VLF-SGTLRKNLDPFEK---------YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~---~LF-~gTI~eNI~~~~~---------~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRI 483 (597)
||||++ .+| +.|++||+.++.. .+.++. ...+.++++.+ |+. .........||||||||+
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~~LSgGekqrv 404 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF-NIKTPSMEQAIGLLSGGNQQKV 404 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc-CCCCCCccCchhhCCHHHHHHH
Confidence 999997 355 4799999975310 111111 11223444332 442 235566778999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+.
T Consensus 405 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred HHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999875 37899999999999865 99999999999986
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-37 Score=310.31 Aligned_cols=182 Identities=23% Similarity=0.360 Sum_probs=150.4
Q ss_pred EEeCCCCccceeeeEEEc-----CCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 348 VRYLSGPRVIKNLNITIH-----PKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 348 f~Y~~~~~vL~~isl~I~-----~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+|++....|+|++|+++ +|++++|+||||||||||+++|+|++ |++|+|.++|. .|+|+||
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q 68 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQ 68 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecc
Confidence 678766668899999997 68999999999999999999999987 57899999984 6999999
Q ss_pred CCC-CCCccHHhhcccCC-CC-C-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 422 DPV-LFSGTLRKNLDPFE-KY-P-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 422 ~~~-LF~gTI~eNI~~~~-~~-~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
++. .++.|++||+.... .. . .+...++++. .|++.........||||||||++|||||+++|+++|
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~----------l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~lll 138 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP----------LQIEQILDREVPELSGGELQRVAIAACLSKDADIYL 138 (246)
T ss_pred cccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH----------cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 987 46899999996431 11 1 1122233333 344444556667899999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
|||||++||+++...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|+++..+
T Consensus 139 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 139 LDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCee
Confidence 9999999999999999999998753 7899999999999985 9999999876544
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-37 Score=341.57 Aligned_cols=196 Identities=19% Similarity=0.279 Sum_probs=156.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|. ..|+||
T Consensus 2 l~i~~ls~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFGA-KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeCC-cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 789999999964 57999999999999999999999999999999999987 57899999872 469999
Q ss_pred eCCCCCCC-ccHHhhcccCCC-----------------CChHH---HHHHH----------HHhcHHHHHHhcCCCchhh
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK-----------------YPDYV---LWTAL----------QEVELKDMIMEGAGLNMTV 468 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~-----------------~~~e~---i~~a~----------~~a~l~~fI~~l~GldT~v 468 (597)
+|++.+|. .|++||+.++.. ...+. +.+.. ....+.+.++. -|++...
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~ 148 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLG-VGIPEEQ 148 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHh-CCCChhH
Confidence 99998886 499999875310 00000 00000 01112222222 3554333
Q ss_pred -hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe
Q psy1502 469 -YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD 546 (597)
Q Consensus 469 -ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~ 546 (597)
.....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .+.|+|+|||+++.+.. ||+|++|+
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 234679999999999999999999999999999999999999999999975 37899999999999865 99999999
Q ss_pred CCeEE
Q psy1502 547 SGVAV 551 (597)
Q Consensus 547 ~G~Iv 551 (597)
+|+++
T Consensus 227 ~g~i~ 231 (530)
T PRK15064 227 YGELR 231 (530)
T ss_pred CCEEE
Confidence 99995
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-36 Score=339.80 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=159.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++ +.+|||
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 4899999999963467999999999999999999999999999999999987 5789999975 247999
Q ss_pred EeCCCCCCCc-cHHhhcccCC-C----------------CCh----------HHHHHHHHHhcH---HHHHHh-c--CCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE-K----------------YPD----------YVLWTALQEVEL---KDMIME-G--AGL 464 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~-~----------------~~~----------e~i~~a~~~a~l---~~fI~~-l--~Gl 464 (597)
|||+|.+|+. |++||+.++. . ..+ .++.++++.++. .+-+.. + .|+
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 9999999975 9999997531 0 000 112222222211 111111 1 344
Q ss_pred chhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE
Q psy1502 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL 543 (597)
Q Consensus 465 dT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii 543 (597)
+ ........||||||||++|||||+.+|++||||||||+||+++...+.+.|+++ +.|+|+|||+++.+.. ||+|+
T Consensus 155 ~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 155 P-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred C-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 3 234556789999999999999999999999999999999999999999999887 3599999999999976 89999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+++.
T Consensus 232 ~l~~g~i~~ 240 (556)
T PRK11819 232 ELDRGRGIP 240 (556)
T ss_pred EEeCCEEEE
Confidence 999999874
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-37 Score=341.74 Aligned_cols=202 Identities=21% Similarity=0.297 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCC-CChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTED-VPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~-~~~~~lr~~I 416 (597)
-|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+.+ ++|+|.++|.++.. .+...+|++|
T Consensus 260 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 260 RIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred eEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 4999999999964 469999999999999999999999999999999999876 38999999987643 2334567899
Q ss_pred EEEeCCCCCCC---ccHHhhcccC--C------CCCh---HHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHH
Q psy1502 417 SIIPQDPVLFS---GTLRKNLDPF--E------KYPD---YVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQ 481 (597)
Q Consensus 417 ~~V~Q~~~LF~---gTI~eNI~~~--~------~~~~---e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQ 481 (597)
+||+|++.++. .|+++++.++ . .... +++.++++.. |++. ........|||||||
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL----------GIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc----------CCchhhccCchhhCCHHHHH
Confidence 99999987642 4677776421 1 0111 1222222222 4443 344556789999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-D-CTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|++|||||||++||+++...+.+.|.++.+ + .|+|+|||+++.+.. ||++++|++|+|++
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 99999999999999999999999999999999999998754 3 469999999999974 79999999999987
No 321
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-36 Score=369.19 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++||++.|+ +++++|+|+||++++||.+||+||||||||||+++|+|+. |++|+|.++|.|+.. +...+|+++|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999995 3567999999999999999999999999999999999987 678999999999975 5667889999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|+||++.+|+ .|++|||.+.. ..+.++..+ .+.+.++. -|++........+||||||||++|||||+.+|
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~-vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLED-TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999997 59999997631 223222211 11222222 24555556677899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|+++.
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998788999999999999975 99999999999987
No 322
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.6e-38 Score=289.48 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~ 417 (597)
.+..+|+..+|. .++|.+|+||++++||.||+.||+|+||||.+..+.||. |++|.|.+||.|++.++.... |--||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 478899999995 457999999999999999999999999999999999997 689999999999999997664 45699
Q ss_pred EEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|+||+|.+|.+ |++|||...-+..+.....+-++..+++.+++ .++...-...|..||||||.|+-|||||..||+.+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~e-f~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEE-FHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH-hchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 99999999975 99999964222222112222233233333332 14455556778999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCc-hhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRL-HTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl-sti~~~D~Iivl~~G~Ive 552 (597)
+||||++++||.+-..|++-+..+.. +--+++.-|.. +|+.-|||.|++.+|+|..
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla 219 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA 219 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEe
Confidence 99999999999999999999988764 55677777885 5677899999999999987
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=337.58 Aligned_cols=200 Identities=18% Similarity=0.271 Sum_probs=164.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++| ++.++|
T Consensus 319 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 386 (530)
T PRK15064 319 ALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGY 386 (530)
T ss_pred eEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEE
Confidence 5999999999964 56999999999999999999999999999999999987 5789999987 357999
Q ss_pred EeCCCC--CCC-ccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPV--LFS-GTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~--LF~-gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|||++. +++ .|+++|+.... ...++++.++++..++. ..........||||||||++||||++.+|
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~~LSgGq~qrv~la~al~~~p 457 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS---------QDDIKKSVKVLSGGEKGRMLFGKLMMQKP 457 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC---------hhHhcCcccccCHHHHHHHHHHHHHhcCC
Confidence 999974 443 69999986421 22234455555444431 12344556799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCchhHhhHh
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDL 563 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g~y~~l~~ 563 (597)
+||||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|++++. .|.+.+..+
T Consensus 458 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~-~g~~~~~~~ 525 (530)
T PRK15064 458 NVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDF-SGTYEEYLR 525 (530)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEc-CCCHHHHHH
Confidence 999999999999999999999999987 4599999999999875 999999999999841 344544443
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-37 Score=338.00 Aligned_cols=202 Identities=18% Similarity=0.288 Sum_probs=163.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~~I~ 417 (597)
.++++|+++. .+++|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ .+.+++.|+
T Consensus 257 ~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 4899999852 4899999999999999999999999999999999987 47899999999987543 345678999
Q ss_pred EEeCCCC---CC-CccHHhhcccCCC-C--------ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDPV---LF-SGTLRKNLDPFEK-Y--------PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~~---LF-~gTI~eNI~~~~~-~--------~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRI 483 (597)
|+||++. +| +.|+.||+.++.. . ...+- ...+.+++.. -|++ .........||||||||+
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~-~~l~~~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRS-LNIKTPSREQLIMNLSGGNQQKA 405 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHh-cCcccCCccCccccCCHHHHHHH
Confidence 9999973 55 4799999976321 0 11111 1112233333 2442 234455679999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||++.+|++|||||||++||+.+...+.+.|.++.+ +.|+|+|||+++.+.. ||++++|++|+++.
T Consensus 406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988754 7899999999999964 99999999999987
No 325
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=284.12 Aligned_cols=201 Identities=23% Similarity=0.352 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+.+|+|++-. ++.+|+++||+++|||.+||+||+|+|||||++.|+|- -|.+|++.++|+++.+.+.+.+-++-++.
T Consensus 2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 78899999884 46699999999999999999999999999999999994 57899999999999999999999999999
Q ss_pred eCCCCC-CCccHHhhcccCC-------CCChHH--HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 420 PQDPVL-FSGTLRKNLDPFE-------KYPDYV--LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~-------~~~~e~--i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
||+..| |.-|++|=+.+|. +..+++ ..+|+..+++..|- +..-..|||||+||+.+||.|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la----------~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA----------GRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh----------ccchhhcCchHHHHHHHHHHH
Confidence 999885 8999999997652 222333 56677777765553 223358999999999999999
Q ss_pred cc------CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 490 VR------NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~------~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.. ++++|+|||||||||......+++..+++.. +..|++|=|+|+... .||||++|.+||++.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee
Confidence 65 3459999999999999999999999988764 689999999999885 699999999999998
No 326
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=278.94 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=170.0
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
+..++++.+|++. ..+|+|+|++|.+||.+.++||||||||||+|+++||. |..|+|.+||.+|..-. ..=|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----cccee
Confidence 5678999999643 34999999999999999999999999999999999997 56799999999987654 34689
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHh--cCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIME--GAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~--l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+|++-|+. -|+.||+.|+- .++..+ +..-.+++... +++++ -..-..||||||||+.|||||.-+
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~-----R~~~a~q~l~~VgL~~~~---~~~i~qLSGGmrQRvGiARALa~e 150 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQ-----RREIAHQMLALVGLEGAE---HKYIWQLSGGMRQRVGIARALAVE 150 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHhCccccc---ccceEeecchHHHHHHHHHHhhcC
Confidence 999999999 59999999862 344332 12222233322 23333 233468999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeC--CeEEEecCchhHhhHhhhcc
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDS--GVAVVSSFGFFFSKDLIEGT 567 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~--G~Ive~~~g~y~~l~~~~~~ 567 (597)
|+.|+||||++|||+-|...+|+.|-++.+ ++-+++|||.++..- -+++++||+- |+|++.-.--|.+-|....+
T Consensus 151 P~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~aage~ 230 (259)
T COG4525 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGEP 230 (259)
T ss_pred cceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHhhcCCC
Confidence 999999999999999999999999987664 789999999998876 5999999976 79999332225555543333
No 327
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=331.34 Aligned_cols=204 Identities=17% Similarity=0.293 Sum_probs=164.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH-HHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS-KLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~-~lr~~I~ 417 (597)
.|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+. |++|+|.+||.++...+.. .+++.++
T Consensus 250 ~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 48999999985 35999999999999999999999999999999999987 5789999999999876654 3577899
Q ss_pred EEeCCCC---CCC-ccHHhhccc-----C-C--C-CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDPV---LFS-GTLRKNLDP-----F-E--K-YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~~---LF~-gTI~eNI~~-----~-~--~-~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRI 483 (597)
|+||++. +|. .|+.+|+.. . . . .+..+..+ ...++++.+ |+. -........||||||||+
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LSgGq~qrv 400 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM-RVKTPGHRTQIGSLSGGNQQKV 400 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc-CccCCCcccccccCCcHHHHHH
Confidence 9999963 565 577777422 1 1 1 11111111 122344443 332 124556679999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||++++|++|+++.
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998764 4789999999999986 499999999999986
No 328
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-36 Score=280.72 Aligned_cols=154 Identities=35% Similarity=0.547 Sum_probs=143.7
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++|++|+|++ +++|+++||+|++|+.++|+|++|||||||+++|.|+++ .+|+|.+||.++.+.....++++++|++
T Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 37899999965 469999999999999999999999999999999999885 6899999999998887788889999999
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
| |||||+||++||||++.+|+++||||
T Consensus 80 q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 80 Q-----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred e-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
||++||.++...+.+.|.+..+ ++|++++||+++.+.+ ||++++|++|+
T Consensus 107 p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999988755 4899999999999998 59999999985
No 329
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=271.44 Aligned_cols=202 Identities=25% Similarity=0.363 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce--eCCCCC----hHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI--DTEDVP----LSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~--di~~~~----~~~l 412 (597)
+|+++|++|.|+. ..+|.||+|+-+.|+++.+.||||+|||||++.|.=+. |.+|+..|-|. |.+... ...+
T Consensus 2 sirv~~in~~yg~-~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGA-HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccccc-chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 4899999999964 45999999999999999999999999999999998775 78999999765 555443 3468
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcc--cC--CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLD--PF--EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~--~~--~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|+.+|+|+|+-.|.. -|+-||+. +- ...++++ -.+.+++..+.+|.. .-...|||||.||+
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~ad----------r~plhlsggqqqrv 150 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYAD----------RYPLHLSGGQQQRV 150 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccc----------cCceecccchhhhH
Confidence 999999999999996 69999984 21 1334443 233344444444422 23468999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||.-+|++|++||||+||||+-.+.|.+-|+++.. |.|-++|||.....+. |.+++.||+|+|||
T Consensus 151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive 221 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEe
Confidence 999999999999999999999999999999999988865 7899999999999976 89999999999999
No 330
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.5e-36 Score=311.60 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH-HHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS-KLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~-~lr~~I~ 417 (597)
-++++|++..|| +-.+++||||+|++||.-||.|.+|+|||||++.|.|+| |++|+|.+||+.++--++. ..|.-||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 389999999998 566899999999999999999999999999999999999 6899999999999877654 5778899
Q ss_pred EEeCCCCCCCc-cHHhhcccCCCCCh---HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEKYPD---YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~~~~---e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
+|.|++.|++. |+.|||.++.+.+. -...++.++ +.+..+. -|++-...+.-..||-||+||+-|-+|||++|
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~--i~~l~~~-yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR--IKELSER-YGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHH--HHHHHHH-hCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 99999999975 99999988643210 011122111 1222222 35555556666789999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||||-|-|..-..+.+.++++.+ |+|+|+|||+|..++. |||+-||.+|+++.
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 99999999999999999999999988764 8999999999999986 99999999999988
No 331
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.6e-36 Score=331.61 Aligned_cols=201 Identities=21% Similarity=0.321 Sum_probs=164.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~ 417 (597)
-|+++|++. .+|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+... +++.|+
T Consensus 268 ~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 489999984 2699999999999999999999999999999999987 57899999999998776554 467899
Q ss_pred EEeCCC---CCCC-ccHHhhcccC--C--C--CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHH
Q psy1502 418 IIPQDP---VLFS-GTLRKNLDPF--E--K--YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 418 ~V~Q~~---~LF~-gTI~eNI~~~--~--~--~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIA 486 (597)
||||++ .+|. .|+.+|+... . . ....+. ...+.++++.+ |++ .........||||||||++||
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL-NIKFNHAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc-CCCCCCccCccccCCcHHHHHHHHH
Confidence 999986 3665 5999998531 0 1 011111 11223444432 454 345566678999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||++++|++|+|+.
T Consensus 416 ~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 416 KCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred HHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988753 7899999999999975 99999999999986
No 332
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1e-35 Score=360.76 Aligned_cols=203 Identities=19% Similarity=0.281 Sum_probs=172.9
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
..|+++|++++|++ .+++|+|+||+|++||++||+||+|||||||+++|+|+. |++|+|.++|.++.. +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 35999999999965 357999999999999999999999999999999999987 688999999999965 455678899
Q ss_pred EEEeCCCCCCC-ccHHhhcccC---CCCChHHH----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPF---EKYPDYVL----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+||++.+++ -|++||+.+. ...+.+++ .++++.. |++.........||||||||++||||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~l----------gL~~~~dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL----------GLSLYADRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999986 5999999752 12333332 2233333 34444455567899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|+||+|||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||||++|++|+++.
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC 2150 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998864 47999999999999975 99999999999987
No 333
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.6e-36 Score=315.04 Aligned_cols=169 Identities=28% Similarity=0.350 Sum_probs=142.3
Q ss_pred EEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC---CCChHH--
Q psy1502 372 IVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYV-- 444 (597)
Q Consensus 372 IVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~-- 444 (597)
|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++|+||+|++.+|. .|++||+.++. ..+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999998 478999999999987664 4688999999999997 49999998642 223222
Q ss_pred --HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC
Q psy1502 445 --LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522 (597)
Q Consensus 445 --i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~ 522 (597)
+.++++.. |++.........||||||||++|||||+++|++||||||||+||+.+...+.+.|.++.+
T Consensus 79 ~~~~~~l~~~----------~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 79 PRVLEALRLV----------QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHc----------CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 23333333 444445556678999999999999999999999999999999999999999999988754
Q ss_pred --CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 523 --DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 523 --~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 6899999999998765 99999999999987
No 334
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-36 Score=275.16 Aligned_cols=205 Identities=21% Similarity=0.328 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-----------
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----------- 407 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----------- 407 (597)
.++.+|+..+|.. ..||++|||+.++|+.|.|+|.|||||||++++|.=|. |..|.|.++|..|+-.
T Consensus 6 ~l~v~dlHK~~G~-~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhccc-chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 4889999999954 46999999999999999999999999999999998775 7789999999987533
Q ss_pred --ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC----CCChH-HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 408 --PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE----KYPDY-VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 408 --~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e-~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
..+.+|.+.++|+|+.-|.+ .|+.||..-.+ ..+.. .+.+|- .+... -|++..-..-...|||||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae------~~L~k-VGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAE------KYLAK-VGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHH------HHHHH-hCchhhhhcCccccCchH
Confidence 24568899999999999996 79999984211 22322 222221 12221 233333334467899999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.||.||||||.-+|+++++|||||||||+---+|.+.++++.. ++|.++|||-+...++ +.+++.|.+|.|.|
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 9999999999999999999999999999999999999988764 8999999999999998 69999999999977
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.7e-36 Score=296.74 Aligned_cols=174 Identities=17% Similarity=0.209 Sum_probs=141.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEE-EcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHh
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIK-IDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRK 432 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~-idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~e 432 (597)
+|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|. ++|.++ .+.|++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 799999999999999999999999999999999987 5789997 777543 13467788875 9999
Q ss_pred hcccC---CCCChHHHHHHH-HHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 433 NLDPF---EKYPDYVLWTAL-QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 433 NI~~~---~~~~~e~i~~a~-~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
|+.+. ...+.++..+.+ +..++. +.+++.+ ..||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLE------QCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChh------HHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99753 133444433222 111111 2334444 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 509 te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+...+.+.|.+..+++|+|++||+++.+. .||++++|++|++++
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~ 183 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM 183 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE
Confidence 99999998876667789999999999996 599999999999987
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.2e-35 Score=329.99 Aligned_cols=216 Identities=20% Similarity=0.226 Sum_probs=166.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++ + ..|||
T Consensus 324 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~ 391 (556)
T PRK11819 324 VIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAY 391 (556)
T ss_pred EEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEE
Confidence 5999999999964 46999999999999999999999999999999999987 5789999954 2 16999
Q ss_pred EeCCC-CCCC-ccHHhhcccCCC---CC--hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDP-VLFS-GTLRKNLDPFEK---YP--DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~-~LF~-gTI~eNI~~~~~---~~--~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||++ .++. .|++||+.++.. .. +.+..++++ . -|+.. ........||||||||++||||++
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~---------~-~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVG---------R-FNFKGGDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHH---------h-CCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 99997 5664 599999976321 11 122222222 2 23422 234456789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeC-CeEEEecCchhHhhHhhhccc
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDS-GVAVVSSFGFFFSKDLIEGTV 568 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~-G~Ive~~~g~y~~l~~~~~~~ 568 (597)
.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||+++.+.. ||+|++|++ |++.+- .|.|.+..++ .++
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~-~g~~~~~~~~-~~~ 537 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWF-EGNFQEYEED-KKR 537 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEe-cCCHHHHHHH-HHH
Confidence 999999999999999999999999999987 3 499999999998875 999999996 787752 4556554333 333
Q ss_pred chHHHHHHHhHhH
Q psy1502 569 SAKVLSSRKRREK 581 (597)
Q Consensus 569 ~~~~~~~~~~~~~ 581 (597)
......+++++++
T Consensus 538 ~~~~~~~~~~~~~ 550 (556)
T PRK11819 538 RLGADAARPHRIK 550 (556)
T ss_pred HHHHHHhhHHHHh
Confidence 3333444444443
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-35 Score=281.37 Aligned_cols=144 Identities=27% Similarity=0.321 Sum_probs=130.3
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
.||+++|++ .++++++ |++++|++++|+||||||||||+++|+|++ |++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~~-~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYGV-FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEECC-EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 688999964 5689884 999999999999999999999999999987 578999999963 7899987
Q ss_pred CCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 423 PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
+. ||||||||++||||++.+|+++||||||
T Consensus 70 ~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 70 ID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 53 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|+++-.+
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999988753 3899999999999984 9999999988655
No 338
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-35 Score=355.45 Aligned_cols=204 Identities=22% Similarity=0.305 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeC------------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeC
Q psy1502 340 KIEFQNTNVRYL------------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDT 404 (597)
Q Consensus 340 ~I~f~nVsf~Y~------------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di 404 (597)
.+.|+||+|..+ ++..+|+|||++++||+.+||+||||||||||+++|+|..+ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 689999999983 12369999999999999999999999999999999999864 479999999886
Q ss_pred CCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCC-
Q psy1502 405 EDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGG- 472 (597)
Q Consensus 405 ~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G- 472 (597)
. ...+++.+|||+|++.++. .|++|||.+. .+.++++ +.++++..++.+ -.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~------~~~~~vg~~~~ 1017 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN------LKDAIVGLPGV 1017 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh------HhCCccCCCCC
Confidence 4 3456788999999988876 5999999752 1233332 344454444433 2477888655
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--HhhcCEEEEEeC-C
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--IMDSDKVLVMDS-G 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i~~~D~Iivl~~-G 548 (597)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++. ...||++++|++ |
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999998754 7899999999984 467999999996 8
Q ss_pred eEEE
Q psy1502 549 VAVV 552 (597)
Q Consensus 549 ~Ive 552 (597)
+++.
T Consensus 1098 ~~v~ 1101 (1470)
T PLN03140 1098 QVIY 1101 (1470)
T ss_pred EEEE
Confidence 9886
No 339
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-35 Score=288.57 Aligned_cols=184 Identities=24% Similarity=0.313 Sum_probs=159.1
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHHHhcCcEEEeCCCCCCC-ccHHh
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSKLRSNISIIPQDPVLFS-GTLRK 432 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~lr~~I~~V~Q~~~LF~-gTI~e 432 (597)
++||+.+....+||-|+||||||||+|+|.|+. |++|.|.+||.-+.+- ...--+++||||+||.-||. -|++.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 689999988999999999999999999999987 7899999999977554 34456889999999999996 79999
Q ss_pred hcccCCCCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 433 NLDPFEKYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 433 NI~~~~~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
|++|+...+ .++..+++ .+-|+...+.....+||||+|||+||+|||+.+|++|+||||.|+||-...+
T Consensus 96 NL~YG~~~~~~~~fd~iv----------~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLV----------ALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred chhhhhcccchHhHHHHH----------HHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 999986544 33333332 3346666777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC--cEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 512 LIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 512 ~I~~~l~~~~~~--~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+++--|+++.++ --++.|||.+..+.+ ||++++|++|++..
T Consensus 166 EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 166 EILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 999999888763 579999999999865 99999999999987
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=278.08 Aligned_cols=200 Identities=27% Similarity=0.364 Sum_probs=168.0
Q ss_pred CCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCC--CC-
Q psy1502 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LF- 426 (597)
Q Consensus 351 ~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~--LF- 426 (597)
+..+++|+++||+|++|++|-|+|.+|||||||++.|.|- .|++|+|.|||+|+...+.+.--..++-|+|||. .|
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 3456899999999999999999999999999999999995 5789999999999999999988889999999997 44
Q ss_pred CccHHhhcccCC------CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 427 SGTLRKNLDPFE------KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 427 ~gTI~eNI~~~~------~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+-||.||+.... ..+.. ...-++....+-+..+ .|++-.++.+-.-|||||||-++++-|.++.|+||+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 369999996421 11211 1111223333445666 89999999998899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhc-CEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDS-DKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~-D~Iivl~~G~Ive 552 (597)
|-|+||||.+...|++.=.+..+ +-|++||||.+.-.-++ +|.++|++|+||-
T Consensus 174 EHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred chhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 99999999999999877555432 56999999999988764 9999999999987
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.3e-35 Score=326.80 Aligned_cols=196 Identities=19% Similarity=0.239 Sum_probs=158.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++ + ..|+|
T Consensus 322 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~ 389 (552)
T TIGR03719 322 VIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAY 389 (552)
T ss_pred EEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEE
Confidence 4999999999964 56999999999999999999999999999999999986 5789999954 2 16999
Q ss_pred EeCCCC-CCC-ccHHhhcccCCC---CC--hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPV-LFS-GTLRKNLDPFEK---YP--DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~-LF~-gTI~eNI~~~~~---~~--~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||++. ++. .|++||+.++.. .. +.+.. +.+.. -|++. ........||||||||++|||||+
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGR-FNFKGSDQQKKVGQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHh-CCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999973 564 599999976421 11 11122 22222 24432 234556789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeC-CeEEEecCchhHh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDS-GVAVVSSFGFFFS 560 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~-G~Ive~~~g~y~~ 560 (597)
.+|++|||||||++||+.+...+.+.|.++. .|+|+|||++..+.. ||+|++|++ |+++.- .|.|.+
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~-~g~~~~ 528 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWF-EGNYSE 528 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEe-CCCHHH
Confidence 9999999999999999999999999999873 499999999999875 999999997 587652 344543
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.1e-35 Score=331.60 Aligned_cols=190 Identities=24% Similarity=0.320 Sum_probs=156.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++ +.+|+|
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igy 576 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAV 576 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEE
Confidence 5999999999965567999999999999999999999999999999999987 5789999875 347999
Q ss_pred EeCCCCCCCccHHhhccc-----CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVLFSGTLRKNLDP-----FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~-----~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|++. ...++.+|... ....+++++.++++..++.+ .........||||||||++||||++.+|
T Consensus 577 v~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~---------~~~~~~~~~LSgGqkqRvaLAraL~~~p 646 (718)
T PLN03073 577 FSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG---------NLALQPMYTLSGGQKSRVAFAKITFKKP 646 (718)
T ss_pred Eecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh---------HHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 999863 23355555321 12334555665555555421 1233456799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.+. + .|+|+|||++..+.. ||++++|++|++++
T Consensus 647 ~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~ 704 (718)
T PLN03073 647 HILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTP 704 (718)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999875 3 499999999999975 99999999999984
No 343
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1e-34 Score=275.43 Aligned_cols=156 Identities=21% Similarity=0.320 Sum_probs=130.5
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
..++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ..+ .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 356899999999999999999999999999999985 368999998763 222 2456888887
Q ss_pred hcccCCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHccC--CCEEEeecCCCCCCHHH
Q psy1502 433 NLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRN--NVILVLDEATANVDPKT 509 (597)
Q Consensus 433 NI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~~--p~ILILDEaTSaLD~~t 509 (597)
.++ ++.+ |+.. ........||||||||++||||++++ |+++||||||++||+++
T Consensus 68 -------------~~~---------l~~~-~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQF---------LIDV-GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHH---------HHHc-CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 122 2222 3332 25667889999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 510 DLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 510 e~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+.
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 999999998875 47999999999999999999999977643
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.6e-34 Score=327.36 Aligned_cols=189 Identities=20% Similarity=0.289 Sum_probs=154.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+ |.++ .|||
T Consensus 319 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAY 386 (635)
T ss_pred eEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEE
Confidence 4899999999964 56999999999999999999999999999999999987 57899998 4332 5999
Q ss_pred EeCCC-CCCC-ccHHhhcccCC-CC--C--hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDP-VLFS-GTLRKNLDPFE-KY--P--DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~-~LF~-gTI~eNI~~~~-~~--~--~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll 490 (597)
++|++ .++. .|+.||+.++. .. + ..++. +.+.. .|+.. ........||||||||++||||++
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVL---------GYLQD-FLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHH---------HHHHh-cCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 99986 4665 59999997532 11 1 11222 22222 13321 233445689999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe-CCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD-SGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~-~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|++. +.|+|+|||++..+.. ||+|++|+ +|+|.+
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 999999999999999999999999999886 4699999999999865 99999998 899987
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=325.52 Aligned_cols=189 Identities=21% Similarity=0.324 Sum_probs=154.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++. .+|||
T Consensus 312 ~l~~~~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred eEEEEeeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 4899999999964 56999999999999999999999999999999999987 57899999741 26999
Q ss_pred EeCCC--CCCC-ccHHhhccc-CCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDP--VLFS-GTLRKNLDP-FEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~--~LF~-gTI~eNI~~-~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|++ .++. .|+.+++.. .....++++.++++.. |+.. .+......||||||||++||||++++|
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----------~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF----------GFQGDKVTEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc----------CCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99985 3443 478888642 1122233333333333 3321 234455689999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++ + .|+|+|||++..+.. ||+|++|++|+|+.
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~ 507 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEP 507 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999987 3 599999999999975 99999999999985
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-34 Score=320.98 Aligned_cols=198 Identities=20% Similarity=0.270 Sum_probs=153.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|++ |++|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWV 69 (638)
T ss_pred EEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEE
Confidence 789999999964 56999999999999999999999999999999999987 578999998842 48999
Q ss_pred eCCCCCCCccHHhhcccCC----CCCh-----------HHHHHHHHH------hcHHHHHHh-c--CCCc-hhhhCCCCC
Q psy1502 420 PQDPVLFSGTLRKNLDPFE----KYPD-----------YVLWTALQE------VELKDMIME-G--AGLN-MTVYEGGTN 474 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~----~~~~-----------e~i~~a~~~------a~l~~fI~~-l--~Gld-T~vge~G~~ 474 (597)
+|++..+..|..+++.-.. ..+. ..+...... ....+-+.. + -|+. ......-..
T Consensus 70 ~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 149 (638)
T PRK10636 70 NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD 149 (638)
T ss_pred ecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence 9977666667666553110 0000 000000000 001111222 1 3443 234445678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+++.
T Consensus 150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999886 5799999999999975 99999999999976
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.3e-34 Score=319.17 Aligned_cols=187 Identities=22% Similarity=0.319 Sum_probs=155.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-++++|++++|++ ..|+++||+|++||.+||+||||||||||+++|+|+. |++|+|.++ ..|+|
T Consensus 340 ~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISY 404 (590)
T ss_pred EEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEE
Confidence 4899999999964 3599999999999999999999999999999999987 578999986 15999
Q ss_pred EeCCCCC-CCccHHhhcccCC-CCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPVL-FSGTLRKNLDPFE-KYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~~-~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||++.+ ++.|++||+.++. ... ...+.++++.. |++......-..||||||||++|||||+++|++
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l----------~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL----------QLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC----------CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 4679999997642 222 22233333333 344344555678999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|+++.+ ++|+|+|||++..+.. ||++++|++ ++..
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 999999999999999999999998754 6899999999999865 999999976 6554
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-34 Score=288.84 Aligned_cols=205 Identities=25% Similarity=0.330 Sum_probs=170.1
Q ss_pred EEEEeeEEEeC---CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYL---SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~---~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~~ 411 (597)
++++|++..|. +...+++||||+|.+||++|+||.||||||--+..++|+.| ++|+|.++|.|+-..+...
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 78999988883 23569999999999999999999999999999999999853 3799999999999999888
Q ss_pred Hhc----CcEEEeCCCCCC-C--ccHHhhc----ccCCC----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCC
Q psy1502 412 LRS----NISIIPQDPVLF-S--GTLRKNL----DPFEK----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476 (597)
Q Consensus 412 lr~----~I~~V~Q~~~LF-~--gTI~eNI----~~~~~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LS 476 (597)
+|. +|++|+|||.-- | -||..-| .+... +-.+++.+.++.+++.+--. .+..-...||
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~-------rl~~yPHeLS 159 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK-------RLDAYPHELS 159 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh-------hhhhCCcccC
Confidence 775 899999999722 2 2554444 33322 33455666666666644322 2334468999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||+.||-||..+|++||-||||.|||....+.|.+-|+++.+ +..+++|||+|+.++. ||||+||.+|+|+|
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9999999999999999999999999999999999999999987754 6799999999999986 89999999999999
No 349
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=271.30 Aligned_cols=205 Identities=22% Similarity=0.300 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+|+||+++|. ++++|+|||++|++||.-+|+||+|||||||++++++.++ .+|.+.+.|+..-..+. .++|++||
T Consensus 31 li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 31 LIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred eEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 499999999995 5679999999999999999999999999999999999775 68999999999998887 99999999
Q ss_pred EEeCC---CCCCCccHHhhccc--------CC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 418 IIPQD---PVLFSGTLRKNLDP--------FE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 418 ~V~Q~---~~LF~gTI~eNI~~--------~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+|+-+ -+.=+.+++|=+.. .. +.++++..+|-.. -...|.....+..=..||-|||||+-|
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l-------le~~g~~~la~r~~~~LS~Ge~rrvLi 182 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL-------LELLGAKHLADRPFGSLSQGEQRRVLI 182 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH-------HHHcchhhhccCchhhcCHhHHHHHHH
Confidence 99853 22334566666531 12 4555554433221 111344444555567999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCchhHhhc-CEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTIMDS-DKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrlsti~~~-D~Iivl~~G~Ive 552 (597)
||||+++|++|||||||++||........+.|.++.. ..|+|+|||+.+.+..| ++++.+++|+++.
T Consensus 183 aRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999888888888754 46899999999999765 9999999999975
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.2e-33 Score=313.95 Aligned_cols=196 Identities=23% Similarity=0.294 Sum_probs=149.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|++ |++|+|.++|.. .++++
T Consensus 4 l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~l 71 (635)
T PRK11147 4 ISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVARL 71 (635)
T ss_pred EEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEEe
Confidence 889999999964 56999999999999999999999999999999999987 578999998721 36788
Q ss_pred eCCCCC-CCccHHhhcccCC-------------------CCChHHHHHHHHH------h---cHHHHHHhc---CCCchh
Q psy1502 420 PQDPVL-FSGTLRKNLDPFE-------------------KYPDYVLWTALQE------V---ELKDMIMEG---AGLNMT 467 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~-------------------~~~~e~i~~a~~~------a---~l~~fI~~l---~GldT~ 467 (597)
+|++.. ..+++.+++..+. +..++.+...... . ...+.+... -|++
T Consensus 72 ~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-- 149 (635)
T PRK11147 72 QQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-- 149 (635)
T ss_pred ccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--
Confidence 887643 2357776642110 0001111110000 0 011122221 2442
Q ss_pred hhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe
Q psy1502 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD 546 (597)
Q Consensus 468 vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~ 546 (597)
....-..||||||||++|||||+.+|+||||||||++||+++...+.+.|.++ +.|+|+|||+...+.. ||+|++|+
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIVDLD 227 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 23445689999999999999999999999999999999999999999999887 3699999999999975 99999999
Q ss_pred CCeEEE
Q psy1502 547 SGVAVV 552 (597)
Q Consensus 547 ~G~Ive 552 (597)
+|+++.
T Consensus 228 ~G~i~~ 233 (635)
T PRK11147 228 RGKLVS 233 (635)
T ss_pred CCEEEE
Confidence 999986
No 351
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-34 Score=264.23 Aligned_cols=201 Identities=25% Similarity=0.364 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+.+|. .+.||+++|++||+|+.++|+||+|+|||||+..+.||.+ ++|+|.|||.++.+++.+.|-+.+++.
T Consensus 2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 78999999995 4679999999999999999999999999999999999985 899999999999999999999999999
Q ss_pred eCCCCCCC-ccHHhhcccCC-CC-----ChH---HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE-KY-----PDY---VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~-~~-----~~e---~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
-|+..+-. -|+||=..||+ ++ +.| -+.+|++-.++.+.- ..-=..||||||||--||-.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~----------dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS----------DRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH----------HHhHHhcccchhhhhhhheee
Confidence 99998775 59999998764 22 222 255666555443321 111247999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.++.+-++||||-.+||-+....+++.|+++.. +||+++|-|+.+.... +|+|+-|++|+++.
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~ 216 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence 999999999999999999999999999988765 7999999999999974 89999999999987
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.4e-34 Score=318.41 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=154.7
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEE-----------EcceeCCCCChHH
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIK-----------IDDIDTEDVPLSK 411 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~-----------idg~di~~~~~~~ 411 (597)
++++++|+....+|++++ .+++|+++||+||||||||||+++|+|++ |++|+|. ++|.++.++...-
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 348999965456999999 89999999999999999999999999987 5789998 9999987553211
Q ss_pred --HhcC----cEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 --LRSN----ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 --lr~~----I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
.+.+ +.|++|.|.+|.+|++||+.... ..+++.++++..+ ++......-.+||||||||++|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~----------l~~~~~~~~~~LSgGe~qrv~i 223 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLG----------LENILDRDISELSGGELQRVAI 223 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcC----------CchhhcCChhhCCHHHHHHHHH
Confidence 1123 44556677788899999997421 1233444444333 3333444556899999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCC
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G 548 (597)
||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 224 a~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 224 AAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999998668999999999999975 8999999874
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-33 Score=339.99 Aligned_cols=193 Identities=25% Similarity=0.272 Sum_probs=157.7
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-c
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-G 428 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-g 428 (597)
++|+|+|+++++||.+||+||||||||||+++|+|+. +.+|+|.+||.++.+.. ..+|+.++||+|++.+|. .
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCC
Confidence 5899999999999999999999999999999999974 46899999999986554 346778999999998886 5
Q ss_pred cHHhhcccCC----------CCChHHHHHHHHHhcHHHHHHh--c-CCCchhhhC-CCCCCChhHHHHHHHHHHHccCCC
Q psy1502 429 TLRKNLDPFE----------KYPDYVLWTALQEVELKDMIME--G-AGLNMTVYE-GGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 429 TI~eNI~~~~----------~~~~e~i~~a~~~a~l~~fI~~--l-~GldT~vge-~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|++||+.+.. +.+.++..+.. .++.++. + +-.||.||+ ....||||||||++|||||+.+|+
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHI----ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH----HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 9999997531 12333221110 0112222 3 346888885 456899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCch-hH-hhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH-TI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrls-ti-~~~D~Iivl~~G~Ive 552 (597)
||+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ .+ ..||++++|++|+++.
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~ 291 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY 291 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEE
Confidence 9999999999999999999999999864 789999999974 45 4599999999999987
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.3e-32 Score=312.66 Aligned_cols=211 Identities=19% Similarity=0.183 Sum_probs=159.0
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc----ccCCceEEEcceeCCCCC--h---
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----AEVEGVIKIDDIDTEDVP--L--- 409 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l----~~~~G~I~idg~di~~~~--~--- 409 (597)
..|+++|++|+|++ +++|+|+||+|++|+++|||||||||||||+++|+|. .|++|+|.+.++++..-+ .
T Consensus 176 ~~I~i~nls~~y~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGG-RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCC-CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 35999999999964 4699999999999999999999999999999999985 357899986555432111 1
Q ss_pred ---------HHHhcCcEEEeCCCCCCCccHHhhcccC--CCCCh----HHHHHHHHHhcHH------HHHHh-c--CCCc
Q psy1502 410 ---------SKLRSNISIIPQDPVLFSGTLRKNLDPF--EKYPD----YVLWTALQEVELK------DMIME-G--AGLN 465 (597)
Q Consensus 410 ---------~~lr~~I~~V~Q~~~LF~gTI~eNI~~~--~~~~~----e~i~~a~~~a~l~------~fI~~-l--~Gld 465 (597)
..+++.+++++|++.+...+..+|.... ...+. +++.++++..++. +-+.. + -|++
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 1135568999998876555555554321 11122 2333443333321 11111 1 3443
Q ss_pred h-hhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE
Q psy1502 466 M-TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL 543 (597)
Q Consensus 466 T-~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii 543 (597)
. .....-..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. ||+|+
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~ 412 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDIL 412 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 2 223344689999999999999999999999999999999999999999999887 6899999999999976 99999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+++.
T Consensus 413 ~l~~g~i~~ 421 (718)
T PLN03073 413 HLHGQKLVT 421 (718)
T ss_pred EEECCEEEE
Confidence 999999975
No 355
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.6e-33 Score=255.98 Aligned_cols=135 Identities=38% Similarity=0.613 Sum_probs=122.2
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHhhc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNL 434 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~eNI 434 (597)
|+|+||+|++|++++|+|++|||||||+++|+|++ +.+|+|.+||.++...+...+++.++|++|++.+|++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999988 5789999999999999999999999999999999986 59999
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS 503 (597)
..++++.++++..++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34556777777666544 36778888899999999999999999999999999999997
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.98 E-value=7.8e-33 Score=334.03 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=157.2
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cC---CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-c
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EV---EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-G 428 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~---~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-g 428 (597)
+++|+|+|+.|+||+.++|+||||||||||+++|+|+. +. +|+|.+||.++.+... |+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999986 44 8999999999876543 788999999988886 6
Q ss_pred cHHhhcccCCC-------------CChH----------HH---HHHHHHhc------HHHHHHh--c-CCCchhhhCCC-
Q psy1502 429 TLRKNLDPFEK-------------YPDY----------VL---WTALQEVE------LKDMIME--G-AGLNMTVYEGG- 472 (597)
Q Consensus 429 TI~eNI~~~~~-------------~~~e----------~i---~~a~~~a~------l~~fI~~--l-~GldT~vge~G- 472 (597)
|++||+.+... .+.+ ++ .+++...+ .++.++. + +-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999975210 0111 11 11111111 1223333 2 33578888653
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCch--hHhhcCEEEEEeCC
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH--TIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrls--ti~~~D~Iivl~~G 548 (597)
..||||||||++|||+++.+|++|+|||||++||+.+...+.+.|+++.+ ++|+|+++|+++ ....||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 58999999999999999999999999999999999999999999999853 789999999974 44679999999999
Q ss_pred eEEE
Q psy1502 549 VAVV 552 (597)
Q Consensus 549 ~Ive 552 (597)
+++.
T Consensus 415 ~ivy 418 (1470)
T PLN03140 415 QIVY 418 (1470)
T ss_pred eEEE
Confidence 9987
No 357
>KOG0064|consensus
Probab=99.98 E-value=6.5e-29 Score=258.38 Aligned_cols=447 Identities=17% Similarity=0.180 Sum_probs=279.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCh-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 84 STAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPS-GR---ILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSL 159 (597)
Q Consensus 84 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~s-G~---l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~ 159 (597)
.++..+.+..+..++....++.+++.. .||.-.+. |. .=+++|+|+....+...+...++.-.++.++++...+.
T Consensus 178 ryle~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~ 256 (728)
T KOG0064|consen 178 RYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLL 256 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344555666777777777777777766 66653222 21 22458889887777777777666666655555444443
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHH
Q psy1502 160 SVNPLFSI----PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLH 235 (597)
Q Consensus 160 ~~~~~l~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~ 235 (597)
--+-.... .+.+...+...+.+.+.+..-++...+....+.+...=...+.+-.+|-.|+..+.+.+..++..+..
T Consensus 257 ~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L 336 (728)
T KOG0064|consen 257 DSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRL 336 (728)
T ss_pred hhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHH
Confidence 33332211 11111122223334444444444444444455555555677889999999999999888887776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHH--HH--HhhhhH----------HHHHHH---HHHHHHHHHHHHH
Q psy1502 236 SSTWHLFVYTNMGFAYLIDFLC-LLYLS-TILISFF--FF--ADIGGK----------VGLAVT---QTMTLMGVVQWAM 296 (597)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~--~~~~g~----------i~~~~~---~~~~~~~~~~~~~ 296 (597)
............|+...-.++. ....+ .+++..+ +. ..+.+. .-.+++ ........+..++
T Consensus 337 ~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM 416 (728)
T KOG0064|consen 337 VEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM 416 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222222221111110 00000 0000000 00 000010 001111 1112223333444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc----C---------CCCC-CCCC----CCCCCC---CCCCcccEEEEeeEEEeCCCCc
Q psy1502 297 RQAAEVENHMISVKRLVEYTKL----E---------PEGN-LSPN----YEDENE---IWPVLGKIEFQNTNVRYLSGPR 355 (597)
Q Consensus 297 ~~~~~~~~~~~s~~ri~~~~~~----~---------~~~~-~~~~----~~~~~~---~~~~~~~I~f~nVsf~Y~~~~~ 355 (597)
...-++.+-.+--.|+++.++. . ++.. .... +..+.+ .......|.++||-.--|+...
T Consensus 417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~v 496 (728)
T KOG0064|consen 417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDV 496 (728)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcce
Confidence 4444444444444555543221 0 0000 0000 000000 0011234899999887788777
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
+..+++|+|++|..+.|.||+|||||+|.++|.|++| ..|...+-- +.+|-|+||.|+.=-||+||-|
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQI 565 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQI 565 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCccccee
Confidence 8999999999999999999999999999999999998 567665421 4569999999999999999999
Q ss_pred ccC--------CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC
Q psy1502 435 DPF--------EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506 (597)
Q Consensus 435 ~~~--------~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 506 (597)
.|- +.++|.++...+..++++...+.-.|+|.+-.-. .-||||+|||+++||-++++|+--+|||+|||+-
T Consensus 566 IYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvs 644 (728)
T KOG0064|consen 566 IYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVS 644 (728)
T ss_pred ecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhcccc
Confidence 642 2578999999999999976555447788765543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 507 PKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 507 ~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
.+.|..+.++.++. +-+.|.|+||++..+.-...+-.
T Consensus 645 idvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 645 IDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999886 88999999999999877777666
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=1.6e-31 Score=291.53 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=156.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|.++|++++|+ .+++|+|+||++.+|+++||||++|||||||+++|.|.. |++|+|..++- -+|+|
T Consensus 3 ~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70 (530)
T ss_pred eEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEE
Confidence 489999999994 567999999999999999999999999999999999965 78999998641 37999
Q ss_pred EeCCCCCCCc-cHHhhcccCCC-C--ChHHHHHH------------------HHHhcHH---HHHHh-cCC--CchhhhC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEK-Y--PDYVLWTA------------------LQEVELK---DMIME-GAG--LNMTVYE 470 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~-~--~~e~i~~a------------------~~~a~l~---~fI~~-l~G--ldT~vge 470 (597)
++|++.+.++ |+++.+..+.. . -..+..++ ....+.+ .-+.. +.| +... ..
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~ 149 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR 149 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC
Confidence 9999999965 99998864321 0 00111111 1111100 11112 122 2222 23
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
.-..||||||-|++|||||+.+|+||+|||||.+||.++-..+.+-|.+. ++ |+|+|||+-..+.+ |++|+.+|.|+
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCc
Confidence 34689999999999999999999999999999999999999999999876 55 99999999999987 89999999999
Q ss_pred EEE
Q psy1502 550 AVV 552 (597)
Q Consensus 550 Ive 552 (597)
+..
T Consensus 228 l~~ 230 (530)
T COG0488 228 LTP 230 (530)
T ss_pred eeE
Confidence 876
No 359
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=5.6e-32 Score=247.20 Aligned_cols=203 Identities=26% Similarity=0.318 Sum_probs=161.5
Q ss_pred EEEEeeE--EEeC------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTN--VRYL------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVs--f~Y~------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
++++|++ |.|. ....+.+.|||+.++|+++||+|.+|||||||++.|.|+. |++|+|++||.++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4667775 4442 1235899999999999999999999999999999999987 57999999999998777777
Q ss_pred HhcCcEEEeCCCC-CCC-----ccH-----HhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 412 LRSNISIIPQDPV-LFS-----GTL-----RKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 lr~~I~~V~Q~~~-LF~-----gTI-----~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
..++|-+++|||. -|| |+| +-|-.+.+....+++.+-++.+|+...-. .-....||-|||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdha---------n~~~~~la~~QK 155 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA---------NYYPHMLAPGQK 155 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccc---------ccchhhcCchhH
Confidence 7789999999985 233 222 22222323344566888888888743211 112468999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+|+||||+-+|+|+|-|||-.+||......+..-..++- -|-.-|.|++++-.+++ +|+|+||++|+++|
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE 230 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE 230 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee
Confidence 99999999999999999999999999998888776654432 37789999999999997 89999999999999
No 360
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3.2e-32 Score=259.92 Aligned_cols=200 Identities=22% Similarity=0.393 Sum_probs=173.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.+++++|+.+|. ++.+++||||++++|+..|++|++|+||||.+++|+||. |++|+|.++|.+++.. .+++|||
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRIGY 76 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhccc
Confidence 378999999995 467999999999999999999999999999999999987 5799999999998754 4789999
Q ss_pred EeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhc--CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEG--AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l--~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
.|-+--|+. .|+.|-|.|. ..++..|+.+- +..|.+.+ .|+.| .+-..||-|..|+|.+--|++++
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~~~---~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGKKT---KKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccccc---chHHHhhhhhhHHHHHHHHHhcC
Confidence 999999996 6999999874 35666665543 34667665 34433 44568999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+++|||||+|+|||.+.+.+.+++.++. .|.|+|+-+||++-++. ||+++.|++|+-|-
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~ 210 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVL 210 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEE
Confidence 99999999999999999999999998876 48999999999999975 99999999998775
No 361
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.4e-31 Score=249.54 Aligned_cols=205 Identities=24% Similarity=0.256 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
++++|++.+-.+.+++|+++||+|++||+.||.||+|||||||.+.|+|. | .++|+|++||.||.+++++.. |.-|
T Consensus 4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 78999999885445899999999999999999999999999999999997 5 479999999999999998764 5679
Q ss_pred EEEeCCCCCCCc-cHHhhcccC--C--C------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPF--E--K------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~--~--~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
.+-+|.|.=+.| |+.+=|+.. . . ...+++.++++..++++.. ++-.|+ ..||||+|.|.-|
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-----l~R~vN---~GFSGGEkKR~Ei 155 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF-----LERYVN---EGFSGGEKKRNEI 155 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH-----hhcccC---CCcCcchHHHHHH
Confidence 999999999998 888777531 1 1 1244566777777665511 122233 4799999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhc--CEEEEEeCCeEEEe
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDS--DKVLVMDSGVAVVS 553 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~--D~Iivl~~G~Ive~ 553 (597)
+..++-+|++.|||||-|+||..+-+.|-+.++++.. ++++++|||+-..+... |++.||-+|+|+..
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999988764 78999999999988875 99999999999983
No 362
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=236.07 Aligned_cols=193 Identities=23% Similarity=0.326 Sum_probs=154.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr~~ 415 (597)
.+.++||+..-+ +...|.|+||+|.+||.+-|.||||||||||+.-+.|..+ -+|++.+|++++..++.. ++|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhh
Confidence 367899998775 3568999999999999999999999999999999999763 379999999999988865 789
Q ss_pred cEEEeCCCCCCC-ccHHhhcccC--CC----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPF--EK----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~--~~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+.+||++||+ -++-+||.+. .+ +.......|+++.+++++ -......||||||-|+|+-|+
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~----------f~~dP~tlSGGQrARvaL~R~ 148 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA----------FHQDPATLSGGQRARVALLRA 148 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchh----------hhcChhhcCcchHHHHHHHHH
Confidence 999999999997 5999999763 22 223334445555554443 345567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEeccCchhHhhcCEEEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRK-KF-ADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
|+..|+.|+||||+|.||..-.....+-..+ .. .+.-+|+|||++.-+..-.|++.|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999766665544322 21 377899999999987755555544
No 363
>KOG0061|consensus
Probab=99.97 E-value=3.6e-31 Score=296.30 Aligned_cols=205 Identities=23% Similarity=0.317 Sum_probs=170.9
Q ss_pred ccEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChH
Q psy1502 339 GKIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~ 410 (597)
-.++|+|+++.-+.. +.+|+|||.+++|||..||.||||||||||++.|+|..+ .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 358999999988543 679999999999999999999999999999999998653 5799999994 35677
Q ss_pred HHhcCcEEEeCCCCCCC-ccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhC-CCCCCChh
Q psy1502 411 KLRSNISIIPQDPVLFS-GTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYE-GGTNFSVG 478 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~-gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge-~G~~LSGG 478 (597)
.+++..|||+||..++. -||+|++.+. +..+.++ +.+..+.-++. +==||.+|. ++..+|||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~------~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE------KCADTLIGNPGIRGLSGG 174 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh------hhccceecCCCCCccccc
Confidence 88999999999999996 5999999642 2234333 33333333332 124778873 44689999
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH--hhcCEEEEEeCCeEEE
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI--MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti--~~~D~Iivl~~G~Ive 552 (597)
||+|++||--++.||+||+||||||+||+.+...+.+.|+++.+ |||||+.=|.++.- ...|++++|.+|+++-
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 99999999999999999999999999999999999999998764 89999999999875 4689999999999986
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.3e-30 Score=258.56 Aligned_cols=190 Identities=23% Similarity=0.315 Sum_probs=126.5
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHH-HHHhccccCCceEEEc-c------eeCCCC---ChHHHh-cCcEEE
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI-AAIFRLAEVEGVIKID-D------IDTEDV---PLSKLR-SNISII 419 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~-~LL~~l~~~~G~I~id-g------~di~~~---~~~~lr-~~I~~V 419 (597)
.+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+ ....++ ...++.
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 345699999999999999999999999999996 4432 12333211 0 011000 111112 133444
Q ss_pred eCCCCC-CC--ccHH---hhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVL-FS--GTLR---KNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~L-F~--gTI~---eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
.|++.. ++ .++. +...+... ...++..+ ..+.++. -|+.. ........||||||||++||||+++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~l~~-~~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE------RLGFLVD-VGLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH------HHHHHHH-CCCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 454432 11 1211 11111000 00011110 0122222 34544 3667788999999999999999999
Q ss_pred CC--CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 492 NN--VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 492 ~p--~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
+| ++|||||||++||+.+...+.+.|.++. .+.|+|+|||+++.+..||+|++| ++|+|++
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence 98 5999999999999999999999998864 478999999999999999999999 9999987
No 365
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=8.5e-30 Score=245.59 Aligned_cols=178 Identities=24% Similarity=0.284 Sum_probs=146.3
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
.++|+||||++.+||++||||++|||||||+++|.|.| |++|+|.++|.--.-+.. ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 36899999999999999999999999999999999988 578999999853322221 233322 247899
Q ss_pred hcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCC
Q psy1502 433 NLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505 (597)
Q Consensus 433 NI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 505 (597)
||.+. ...+ ++.+.+..+-|++.||+..| | .+.|-|++-|||.|=|.--+|+|||+||+.|..
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~P------v----ktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQP------V----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCc------h----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99642 1233 44566667777788887665 2 478999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 506 DPKTDLLIQRTIRKK-FADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 506 D~~te~~I~~~l~~~-~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.=.++=.+.++++ .+++|+|+|+|.++.+++ ||++++|++|+|..
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 999777777778777 678999999999999986 99999999999987
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=3.6e-30 Score=249.83 Aligned_cols=163 Identities=20% Similarity=0.194 Sum_probs=131.8
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC----------CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----------EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~----------~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
++++|++++| .++|+||||||||||+++|.++.++ .|++.++|.++.... .+.+|++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPA---NFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCC---ceEEEEEEEEcCCCc-
Confidence 5789999999 9999999999999999999987532 257888888775422 367899999999887
Q ss_pred ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecCCC
Q psy1502 428 GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV----RNNVILVLDEATA 503 (597)
Q Consensus 428 gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll----~~p~ILILDEaTS 503 (597)
+.. ...+++.++++. .++ .......||||||||++||||+. ++|+++||||||+
T Consensus 89 --------~~~-~~~~~~~~~l~~----------~~~---~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~ 146 (197)
T cd03278 89 --------YSI-ISQGDVSEIIEA----------PGK---KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDA 146 (197)
T ss_pred --------eeE-EehhhHHHHHhC----------CCc---cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence 111 123445555444 111 22345689999999999999986 5779999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 504 aLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
+||+++...+.+.|+++.++.|+|+|||++..+..||+++.+..
T Consensus 147 ~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 147 ALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999998778999999999999999999998854
No 367
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.2e-29 Score=226.07 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=160.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcc-----eeCCCCChHH---
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDD-----IDTEDVPLSK--- 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg-----~di~~~~~~~--- 411 (597)
++++++|..|... .--+||||++-|||..||||.||||||||+++|.+ +.|+.|+|.++. .|+..++...
T Consensus 7 L~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 7 LSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred eeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 7889999999543 36889999999999999999999999999999996 678899999865 3444444333
Q ss_pred -HhcCcEEEeCCCCCCCccHHhhccc----CCCCChHHHHHH-H-----HHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 412 -LRSNISIIPQDPVLFSGTLRKNLDP----FEKYPDYVLWTA-L-----QEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 -lr~~I~~V~Q~~~LF~gTI~eNI~~----~~~~~~e~i~~a-~-----~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+|..-|+|.|+| +|-+++ |.++-+ ..+.. . -++.+.+|.++.+=-.+.+.+....+|||.+
T Consensus 86 L~RTeWG~VhQnP-------~DGLRm~VSAG~NiGE-Rlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 86 LLRTEWGFVHQNP-------RDGLRMQVSAGGNIGE-RLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred HhhhccceeecCc-------cccceeeeccCCccch-hHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 345679999999 333332 222221 11110 0 0122347777653334567888999999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+.|||-|...|++.++||||-+||....+++.+.++.+.. +-.+++|||++..++- +||..||++|+++|
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999999999999999999988765 5689999999999985 99999999999999
No 368
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.2e-29 Score=232.88 Aligned_cols=202 Identities=21% Similarity=0.343 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcc-eeCCCCChHHH-hcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDD-IDTEDVPLSKL-RSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg-~di~~~~~~~l-r~~I 416 (597)
.++++||+.++++ -.+|+|+||++.+||.-+|+||+|+||||+++.|.|-. |++|+++++| .|++.++.... |.-|
T Consensus 5 iL~~~~vsVsF~G-F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFGG-FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEcc-eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 3789999999954 45999999999999999999999999999999999987 5679999999 99999986665 5569
Q ss_pred EEEeCCCCCCCc-cHHhhcccC--C----------CCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPF--E----------KYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~--~----------~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
|-=+|.|..|.. |++||+... . ..+ ..++.+.+...++ .-....-...||-|||
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL----------~~~~~~~A~~LSHGqK 153 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL----------GDERDRLAALLSHGQK 153 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHccc----------chhhhhhhhhhccchh
Confidence 999999999975 999998531 1 111 1234444444443 3334445579999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++-|+--+..+|++|+||||++++-.+.....-+-|+++.+.+++++|-|++..++. ||++-||..|.+..
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceee
Confidence 9999999999999999999999999665555667788888889999999999999985 99999999999986
No 369
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.4e-29 Score=243.89 Aligned_cols=191 Identities=25% Similarity=0.338 Sum_probs=147.1
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe-CCCCCC-CccHH
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP-QDPVLF-SGTLR 431 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~-Q~~~LF-~gTI~ 431 (597)
++.+||||+||+|+.++++|++|+||||++|+|.|+. |++|.|.++|.+-..- .+++-+++++|. |...|. +--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechhh
Confidence 4899999999999999999999999999999999975 8899999999987653 344445555553 322211 11122
Q ss_pred hhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 432 KNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
|-+... .+++|.+..+-. +|..+.-+++..+-..-..||=|||-|.-||-||+++|+||+|||||=+||..
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~------~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~ 190 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL------DFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH------HHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence 222110 133444332211 22222346777777778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 509 TDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 509 te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+...|.+.+++.. .++||+..||.++-+.. ||||+.++.|+++-
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 9999999997754 47899999999999965 99999999999997
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=3.2e-29 Score=251.82 Aligned_cols=189 Identities=25% Similarity=0.350 Sum_probs=131.6
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-----c-cc-----cCCc-----------eEEEcceeCCCCChHH-
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-----R-LA-----EVEG-----------VIKIDDIDTEDVPLSK- 411 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-----~-l~-----~~~G-----------~I~idg~di~~~~~~~- 411 (597)
..|+|+|++||.|..++|+|+||||||||++-++ + +. |..+ -|.||..+|..-....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998552 2 21 1112 2445554443221100
Q ss_pred ---------Hhc----------------CcEEEeCCCCC-CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCc
Q psy1502 412 ---------LRS----------------NISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465 (597)
Q Consensus 412 ---------lr~----------------~I~~V~Q~~~L-F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~Gld 465 (597)
+|+ .+.|..++... .+.|+.||+.+..... ++ ....+.++. -|++
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--~~------~~~~~~L~~-vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--KI------ARKLQTLCD-VGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--hH------HHHHHHHHH-cCCc
Confidence 000 12222222221 1234444443321110 01 111122222 3666
Q ss_pred h-hhhCCCCCCChhHHHHHHHHHHHccC---CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcC
Q psy1502 466 M-TVYEGGTNFSVGQRQLICLARAIVRN---NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 466 T-~vge~G~~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D 540 (597)
. ..++....||||||||++|||||.++ |+++||||||++||+.+...+.+.|.++.+ +.|+|+|+|++..++.||
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD 239 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCAD 239 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 5 47888999999999999999999996 799999999999999999999999988764 789999999999999999
Q ss_pred EEEEE------eCCeEEE
Q psy1502 541 KVLVM------DSGVAVV 552 (597)
Q Consensus 541 ~Iivl------~~G~Ive 552 (597)
+|++| ++|+|++
T Consensus 240 ~ii~Lgp~~g~~~G~iv~ 257 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVA 257 (261)
T ss_pred EEEEecCCcCCCCCEEEE
Confidence 99999 8999986
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=8.3e-29 Score=270.24 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-++++|++++|++++++++++||.|.+|++||||||+|+|||||+++|+|- -|.+|+|.++- .-+|||
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~igy 389 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVKIGY 389 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceEEEE
Confidence 489999999997667899999999999999999999999999999999995 46799998753 136999
Q ss_pred EeCCC-CCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDP-VLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~-~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
.+|+. .++. .|+.|++.-.. +..+.+++..+...++..- - +...-..||||||-|+.+|+.++.+|.+
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~-----~----~~~~v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE-----D----QEKPVGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH-----H----HhCchhhcCHhHHHHHHHHHHhccCCCE
Confidence 99988 3443 48999987533 3346667777666554221 1 2333458999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCchhHhhH
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKD 562 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g~y~~l~ 562 (597)
|||||||..||.+|-..+.++|.+. +-|+|+|||+...+.+ |++|+++++ ++.+ -.|-|.+..
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~-~~g~y~~y~ 524 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEE-FEGGYEDYL 524 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeE-cCCCHHHHH
Confidence 9999999999999999999999987 4599999999999987 899999998 5554 334454443
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=3e-29 Score=246.81 Aligned_cols=192 Identities=17% Similarity=0.112 Sum_probs=144.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEc-CCcEEEEEcCCCCCHHHHHHHHhc-cc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIH-PKEKIGIVGRTGAGKSSLIAAIFR-LA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~-~G~~vaIVG~SGsGKSTL~~LL~~-l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.|+++|+. +|.+. ++|+|+.. +|+.++|+||||||||||+++|.+ +| +..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 58999998 77433 56777654 589999999999999999999995 66 344555443 222233344456789
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-----
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR----- 491 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~----- 491 (597)
++++|++ +....+.++. ..+.++..+... ....++++.+...+.+||||||||++||||++.
T Consensus 79 ~~~f~~~----~~~~~~~r~~-gl~~~~~~~~~~--------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 79 SFTFQLG----GKKYRVERSR-GLDYDQFTRIVL--------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EEEEEEC----CeEEEEEEec-CCCHHHHHHhhh--------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 9999997 3344444442 444444433221 011346667778888999999999999999974
Q ss_pred -----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 492 -----NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 492 -----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
+|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|+++++|-+
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988865 7899999999998865 799999999854
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=3.6e-29 Score=251.26 Aligned_cols=189 Identities=21% Similarity=0.249 Sum_probs=136.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----------------cCCc--------
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----------------EVEG-------- 395 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----------------~~~G-------- 395 (597)
|+++|.- +|. +..++.+++ |++++|+||||||||||+++|.++. +.+|
T Consensus 4 i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 5666541 243 345777776 8999999999999999999998432 2234
Q ss_pred eEEEcceeCCCC---ChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHH----------HHHhcC
Q psy1502 396 VIKIDDIDTEDV---PLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD----------MIMEGA 462 (597)
Q Consensus 396 ~I~idg~di~~~---~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~----------fI~~l~ 462 (597)
+|.+++.+-... .....+++++++||++.+++ ..++.++++.+++..++.. .+..+.
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~ 146 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLT 146 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhh
Confidence 455554322110 12234566777776665533 2346677777777766532 111121
Q ss_pred CCchhhhCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh
Q psy1502 463 GLNMTVYEGGTNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD 538 (597)
Q Consensus 463 GldT~vge~G~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~ 538 (597)
+++....+.+..||||||||++||||++ ++|+++||||||++||+.+...+.+.|.++.++.|+|+++|+.+..+.
T Consensus 147 ~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~ 226 (243)
T cd03272 147 NMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEV 226 (243)
T ss_pred hccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence 2233356788899999999999999996 468999999999999999999999999998778899999999988888
Q ss_pred cCEEEEEe
Q psy1502 539 SDKVLVMD 546 (597)
Q Consensus 539 ~D~Iivl~ 546 (597)
||+|++|+
T Consensus 227 ~d~i~~l~ 234 (243)
T cd03272 227 ADKFYGVK 234 (243)
T ss_pred CCEEEEEE
Confidence 99999985
No 374
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-28 Score=223.84 Aligned_cols=186 Identities=22% Similarity=0.318 Sum_probs=155.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++.+|++..- ++..++.++||++.+||.+-|+||+|||||||+++|+|+. |.+|+|.++|.+++... +++++..-|+
T Consensus 3 L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yL 80 (209)
T COG4133 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYL 80 (209)
T ss_pred chhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHh
Confidence 3455665544 3456899999999999999999999999999999999986 67899999999998764 3457788888
Q ss_pred eCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
.-.+-+-. -|++||+.|.. ..+++.+++|+..+++.++. |..+ .+||-||+.|+||||-++..+|
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~------dlp~----~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE------DLPV----GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc------ccch----hhcchhHHHHHHHHHHHcCCCC
Confidence 88888775 59999998753 35678899999999987763 4444 3899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD 538 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~ 538 (597)
+.||||||+|||.+.+..+-.-+.... ++-.||..||....+..
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999888776543 57789999999776643
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.8e-27 Score=212.61 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=142.3
Q ss_pred EEEEeeEEEe----CCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcc----eeCCCCCh
Q psy1502 341 IEFQNTNVRY----LSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDD----IDTEDVPL 409 (597)
Q Consensus 341 I~f~nVsf~Y----~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg----~di~~~~~ 409 (597)
+..+||+.++ .++ -|||+|+||+++.||++.+=||||||||||++.|-+-| |++|+|.+-. +|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 6788887766 122 37999999999999999999999999999999999988 7899999832 24444443
Q ss_pred HH----HhcCcEEEeCCCCCCCc-----cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc---CCCchhhhCCCCCCCh
Q psy1502 410 SK----LRSNISIIPQDPVLFSG-----TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG---AGLNMTVYEGGTNFSV 477 (597)
Q Consensus 410 ~~----lr~~I~~V~Q~~~LF~g-----TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~G~~LSG 477 (597)
.. .|+.||||+|---.... -+.|-+. ....+.+.....+ .+....+ +.+- .=-...+||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll-~~gv~~~~a~~~a-----~~Ll~rLnlperLW---~LaPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAKA-----ADLLTRLNLPERLW---SLAPATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH-HcCCCHHHHHHHH-----HHHHHHcCCCHHHh---cCCCcccCC
Confidence 32 46789999995332221 1122221 1122222221111 1222221 1111 112468999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
|++||+-|||+++-|-|||+|||||++||..+.+.|.+.|++.. +|..+|=|=|+-+.-.. |||++-|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999997654 58899999999876554 899998754
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=9.8e-27 Score=234.75 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=136.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc-cC-CceEEEcce-eCCCCC--hHHHhcCcEEEeCCCC---------CC-CccHH
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA-EV-EGVIKIDDI-DTEDVP--LSKLRSNISIIPQDPV---------LF-SGTLR 431 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~-~~-~G~I~idg~-di~~~~--~~~lr~~I~~V~Q~~~---------LF-~gTI~ 431 (597)
...++||||||||||||++.|+++. +. .|++...|. |+-... ....+.+|++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999975 43 478888777 432211 1123458999999962 22 35888
Q ss_pred hhcccCC---------CCChHHHHHHHHHhcHH----H------HHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHc-
Q psy1502 432 KNLDPFE---------KYPDYVLWTALQEVELK----D------MIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 432 eNI~~~~---------~~~~e~i~~a~~~a~l~----~------fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll- 490 (597)
+|+..+. ....+++.++++.+++. . -|.++ +. ..........||||||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 8885421 12346677777777653 0 12222 11 13345667899999999999999997
Q ss_pred ---cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 491 ---RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 491 ---~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
++|+++||||||++||+++...+.+.|+++.++.|+|+|||+.+.+..||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888899999999999999999998764
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.8e-27 Score=231.18 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=134.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHh-cCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLR-SNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr-~~I~~ 418 (597)
.|+++|.- +|. +..+++++++ +.+||+||+||||||++++|.. ++|.+.. ..| +++++
T Consensus 5 ~l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~---------~~G~~~~-----~~~~~~i~~ 63 (212)
T cd03274 5 KLVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF---------VFGFRAS-----KMRQKKLSD 63 (212)
T ss_pred EEEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH---------HhccCHH-----HhhhhhHHH
Confidence 47788876 674 4568999987 8999999999999999999972 3444332 223 67999
Q ss_pred EeCCCCCCCc-cHHhhcccCCCCChHHHH------HHHHH-----hcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEKYPDYVLW------TALQE-----VELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~------~a~~~-----a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
++|+..+++. |.++++.+......-+.. ..... ..+ ..+..+ ++.++. ...||||||||++|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~----~~~lS~G~~~r~~l 138 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKN----ISNLSGGEKTLSSL 138 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccc----hhhcCHHHHHHHHH
Confidence 9999887764 788887654321110000 00000 000 011122 444544 35899999999999
Q ss_pred HHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 486 ARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 486 ARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
|||++ ++|++++|||||++||+++...+.+.|+++.++.|+|+|||+....+.||++++|..
T Consensus 139 a~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 139 ALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99996 358999999999999999999999999999888899999999988889999999854
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=2.8e-26 Score=223.89 Aligned_cols=163 Identities=19% Similarity=0.201 Sum_probs=126.4
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHh----ccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCC-----CCCC-c
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIF----RLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP-----VLFS-G 428 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~----~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~-----~LF~-g 428 (597)
.++++.+| +++|+||||||||||++.|. |.. +..|.+.-+...+.. ..-+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34667777 99999999999999999995 543 445666522222222 23467899999998 4443 3
Q ss_pred cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH------HHHHHHHccCCCEEEeecCC
Q psy1502 429 TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL------ICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 429 TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR------IaIARAll~~p~ILILDEaT 502 (597)
|+.+|+.+. ..+++.+. +.+....|||||+|| ++||||+..+|++++|||||
T Consensus 92 ~~~~~~~~~---~~~~~~~~-------------------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 92 AILENVIFC---HQGESNWP-------------------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred hHhhceeee---chHHHHHH-------------------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 889998763 22332221 145567999999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 503 ANVDPKTDL-LIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 503 SaLD~~te~-~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
++||+++.. .+.+.|.++.+ ++|+|+|||++..+..||+|++|++.
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999998 99999988765 68999999999999999999999653
No 379
>KOG0927|consensus
Probab=99.93 E-value=4.2e-26 Score=239.29 Aligned_cols=191 Identities=23% Similarity=0.329 Sum_probs=157.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|-|.||+|.|++++.+++++||-|..+++||+|||+|+|||||+|+++|.. |..|.|.-.- +.++++
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~~~ 457 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKLPR 457 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccchh
Confidence 4889999999987778999999999999999999999999999999999964 7889886533 233444
Q ss_pred EeC---CCCCCCccHHhhccc-CC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQ---DPVLFSGTLRKNLDP-FE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q---~~~LF~gTI~eNI~~-~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
-.| +....+-|.-|++.. +. .-+.+++...+...|+... ..+..+ .+||+|||-|++.||..++.|
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd-----~q~~p~----~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGD-----AQVVPM----SQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcc-----ccccch----hhcccccchhHHHHHHHhcCC
Confidence 444 334567778888764 23 3456677777777776421 122222 489999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.||+|||||++||.++-....++|++. .-++|.|+|..-.|.+ +++|.+.+||.+..
T Consensus 529 ~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 999999999999999999999999987 4589999999999987 89999999999876
No 380
>KOG0065|consensus
Probab=99.93 E-value=4.4e-26 Score=260.61 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=162.5
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHhcCcEEEeCCCC-CCC
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV-LFS 427 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~-LF~ 427 (597)
+.+.+|+||+=-++||..+|++|+||||||||+++|+|-. ..+|+|+|||.+..+ +..++.+|||.|++. +=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 3457999999999999999999999999999999999753 358999999999765 778999999999665 555
Q ss_pred ccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC-CEE
Q psy1502 428 GTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN-VIL 496 (597)
Q Consensus 428 gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p-~IL 496 (597)
-||||-|.+. .+.+++| ++++.+..++.++- |..||.-|..||.+||.|+.||=-|+.|| .||
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 7999999642 2455554 45555555555442 55799999999999999999999999999 899
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH--hhcCEEEEEeC-CeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI--MDSDKVLVMDS-GVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti--~~~D~Iivl~~-G~Ive 552 (597)
.||||||+||+++...|++.++++. .|+|+++.=|.+|.. +..|+++.|+. |+.|-
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 9999999999999999999999986 489999999999875 67999999976 57664
No 381
>KOG0059|consensus
Probab=99.93 E-value=1.5e-25 Score=261.33 Aligned_cols=204 Identities=20% Similarity=0.301 Sum_probs=174.6
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-ChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV-PLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~-~~~~lr~~I 416 (597)
..+..+|++..|+....+.+++||.|++||+.|+-|++||||||++++|.|.. |++|++.++|.|+..- +.+..++++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 35789999999965444999999999999999999999999999999999987 5789999999999864 445689999
Q ss_pred EEEeCCCCCCC-ccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+||+..|++ -|.||.+.+. +.....+ +.+.++..++.++ .++. -.++|||+|.|++.|-|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~------~~~~----~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY------ANKQ----VRTYSGGNKRRLSFAIA 712 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh------hccc----hhhCCCcchhhHHHHHH
Confidence 99999999997 5999999653 2333323 5555555555544 3333 35899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCc-EEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC-TVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++-+|++++|||||+++||.+.+.+.+.|.+..++. .+|..||.++..+. |||+..|.+|++..
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE
Confidence 999999999999999999999999999999988754 99999999999986 99999999999987
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=4.1e-26 Score=207.49 Aligned_cols=199 Identities=19% Similarity=0.274 Sum_probs=167.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+.++||+.+- -|-.+|.++..||.+=+|||+|||||||+.-+.|+.|.+|+|.++|.|+..++...+-++=+|..
T Consensus 4 ~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLs 78 (248)
T COG4138 4 MQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLS 78 (248)
T ss_pred eeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHh
Confidence 5667776532 35668999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-----CC-
Q psy1502 421 QD-PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR-----NN- 493 (597)
Q Consensus 421 Q~-~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~-----~p- 493 (597)
|+ ...|...+..-+++..+. .+ .+..-+.|..+-+++-.+|..-..||||+.||+-+|-..+. ||
T Consensus 79 Qqq~p~f~mpV~~YL~L~qP~--~~------~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~ 150 (248)
T COG4138 79 QQQTPPFAMPVWHYLTLHQPD--KT------RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA 150 (248)
T ss_pred hccCCcchhhhhhhhhhcCch--HH------HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence 75 458999999999875433 21 12222444444566777888888999999999999999887 33
Q ss_pred -CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCch-hHhhcCEEEEEeCCeEEE
Q psy1502 494 -VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLH-TIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 -~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrls-ti~~~D~Iivl~~G~Ive 552 (597)
++||||||.++||...+..+-..|.+++. +.|+||-.|+|+ |+++||++..+..|++..
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence 69999999999999999988888888764 899999999986 789999999999999876
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.5e-24 Score=229.66 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH-HHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS-KLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~-~lr~~I~~ 418 (597)
++++|++.. ..++|+||++.+||.+||.|--|||+|=|+..|.|..+ .+|+|.+||+++.--++. ..+.-|+|
T Consensus 264 l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~ 338 (500)
T COG1129 264 LEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338 (500)
T ss_pred EEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEe
Confidence 667877652 25889999999999999999999999999999999775 689999999998887754 67888999
Q ss_pred EeCCCC---CC-CccHHhhcccC--CCCChH-HHHHHHHHhcHHHHHHhc----CCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 419 IPQDPV---LF-SGTLRKNLDPF--EKYPDY-VLWTALQEVELKDMIMEG----AGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 419 V~Q~~~---LF-~gTI~eNI~~~--~~~~~e-~i~~a~~~a~l~~fI~~l----~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||-|-- || ..||++||.+. ...... -+....+.+...+++..+ .+.+.. -.+||||-.|++.|||
T Consensus 339 v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~----v~~LSGGNQQKVvlar 414 (500)
T COG1129 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP----IGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch----hhcCCchhhhhHHHHH
Confidence 998543 44 67999999763 111111 244555556667777775 233333 4589999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.|..+|+||||||||-++|.-+.+.|.+.|+++.+ |+++|+||-.+..+. .||||+||.+|+|+.
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998875 799999999999887 699999999999987
No 384
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=4.1e-25 Score=222.30 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=137.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEccee-C-C-----CCChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDID-T-E-----DVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~d-i-~-----~~~~~~ 411 (597)
.|+++|. -+|.+. .+|...+ ..++|+||+|||||||+..|.++ ++..|++..++.+ + . ..+...
T Consensus 3 ~i~l~nf-~~~~~~------~~~~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 3 RLELENF-KSYKGR------HVIGPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEEECc-cccCCC------eeecCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 4677775 335321 1223233 39999999999999999999985 4556777654321 1 1 111112
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcc---c-CCCCChHHHHHHHHHhcHHHHHHh--c-CCCchhhhCC---------CC
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLD---P-FEKYPDYVLWTALQEVELKDMIME--G-AGLNMTVYEG---------GT 473 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~---~-~~~~~~e~i~~a~~~a~l~~fI~~--l-~GldT~vge~---------G~ 473 (597)
..-.+.+..|++ .++..+++++-. . +...+.+++.+.++.++++.+... . +|--+.+.+. ..
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 333455555543 244555555432 1 234677778888888887533211 1 3332333222 26
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 474 NFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
.||||||||++||||++. +|+++||||||++||+.+...+.+.|.++.+ +.|+|+|||+.+.+..||++++|..
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 899999999999999976 4899999999999999999999999998865 7899999999999999999999854
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=8.1e-24 Score=244.46 Aligned_cols=91 Identities=23% Similarity=0.348 Sum_probs=83.7
Q ss_pred CCCch-hhhCCCCCCChhHHHHHHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 462 AGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT-~vge~G~~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
-|++. .++.....||||||||++|||||+++| +++||||||++||+++...+.+.|+++. .+.|+|+|+|++..+
T Consensus 817 vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i 896 (943)
T PRK00349 817 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVI 896 (943)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 36654 468888999999999999999999999 9999999999999999999999999875 478999999999999
Q ss_pred hhcCEEEEE------eCCeEEE
Q psy1502 537 MDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 537 ~~~D~Iivl------~~G~Ive 552 (597)
..||+|++| ++|+|+.
T Consensus 897 ~~aD~ii~Lgp~~G~~~G~Iv~ 918 (943)
T PRK00349 897 KTADWIIDLGPEGGDGGGEIVA 918 (943)
T ss_pred HhCCEEEEecCCcCCCCCEEEE
Confidence 999999999 7999987
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=9.2e-24 Score=253.35 Aligned_cols=200 Identities=20% Similarity=0.257 Sum_probs=141.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHH---------HHhccccC----C-c----eEEEcc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA---------AIFRLAEV----E-G----VIKIDD 401 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~---------LL~~l~~~----~-G----~I~idg 401 (597)
.++++|++. ..|+|+||+|++|+.++|+|+||||||||++ +|.|..++ + + -|.||-
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 478888762 3799999999999999999999999999999 44443211 1 1 134444
Q ss_pred eeCCCCC----h------HHHh---------cCc-----EEEeCC------------------C----------------
Q psy1502 402 IDTEDVP----L------SKLR---------SNI-----SIIPQD------------------P---------------- 423 (597)
Q Consensus 402 ~di~~~~----~------~~lr---------~~I-----~~V~Q~------------------~---------------- 423 (597)
.++..-. . +.+| ++. .+.+|. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 3333211 1 1333 111 122221 0
Q ss_pred ----CCCC-ccHHhhcccCCC-C-----ChHHHHHHHHHhcHHHHHHhcCCCchh-hhCCCCCCChhHHHHHHHHHHHc-
Q psy1502 424 ----VLFS-GTLRKNLDPFEK-Y-----PDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 424 ----~LF~-gTI~eNI~~~~~-~-----~~e~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~LSGGQrQRIaIARAll- 490 (597)
..+. -||.||+.++-. + +.+++.+.++ .++. -|++.. .++....||||||||++|||||+
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~-vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS-LGLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH-cCCcchhhcCccccCCHHHHHHHHHHHHHhh
Confidence 1233 377888766311 1 1222332221 1111 477765 78888999999999999999998
Q ss_pred --cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEe------CCeEEE
Q psy1502 491 --RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMD------SGVAVV 552 (597)
Q Consensus 491 --~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~------~G~Ive 552 (597)
++|++|||||||++||+.+...+.+.|.++. .+.|+|+|+|++..++.||+|++|+ +|+++.
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~ 897 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLA 897 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEE
Confidence 6999999999999999999999999998875 4789999999999998899999996 788887
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=6e-23 Score=236.83 Aligned_cols=91 Identities=24% Similarity=0.364 Sum_probs=83.3
Q ss_pred CCCch-hhhCCCCCCChhHHHHHHHHHHHcc---CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 462 AGLNM-TVYEGGTNFSVGQRQLICLARAIVR---NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT-~vge~G~~LSGGQrQRIaIARAll~---~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
-|++. .+++....|||||+||++|||||.+ +|+++||||||++||+.+...+.+.|.++. ++.|+|+|+|++..+
T Consensus 815 ~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i 894 (924)
T TIGR00630 815 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVI 894 (924)
T ss_pred cCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 36654 4788899999999999999999997 599999999999999999999999999875 478999999999999
Q ss_pred hhcCEEEEE------eCCeEEE
Q psy1502 537 MDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 537 ~~~D~Iivl------~~G~Ive 552 (597)
+.||+|++| ++|+|+.
T Consensus 895 ~~aD~ii~Lgp~~G~~gG~iv~ 916 (924)
T TIGR00630 895 KTADYIIDLGPEGGDGGGTIVA 916 (924)
T ss_pred HhCCEEEEecCCccCCCCEEEE
Confidence 999999999 7999987
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=7.1e-23 Score=198.89 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=117.6
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEE--cceeCCCC-ChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI--DDIDTEDV-PLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~i--dg~di~~~-~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
+++++++.+| ..+|+||+|||||||+..|.-.. .|+... -|..+.++ ....-...|.+++|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l--~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL--GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh--cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 5677777776 77999999999999999986321 111111 12111110 00111456888888876655 2
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH----ccCCCEEEeecCCCCCCHHHH
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI----VRNNVILVLDEATANVDPKTD 510 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl----l~~p~ILILDEaTSaLD~~te 510 (597)
..++.+ .+.+.++++. .....+...+||||||||++||||+ +.+|+++||||||++||+.+.
T Consensus 84 ----~~~~~~------~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 84 ----PLCVLS------QDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred ----cCCHHH------HHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 111111 1122233332 2223445679999999999999999 699999999999999999999
Q ss_pred HHHHHHHHHhcC----CcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 511 LLIQRTIRKKFA----DCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 511 ~~I~~~l~~~~~----~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
..+.+.|.+... ++|+|+++|++..+..+|+|-+|..|+
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999988643 358999999999999999999998754
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=210.16 Aligned_cols=205 Identities=23% Similarity=0.345 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeC-CCCChHHHhc-Cc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDT-EDVPLSKLRS-NI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di-~~~~~~~lr~-~I 416 (597)
-++++|++..-+.+.+.+++|||++.+||.+||.|-+|-|-+-|+.+|+|+. +.+|+|.++|+|+ ..++...+|+ -+
T Consensus 257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 4789999987644456899999999999999999999999999999999997 5679999999997 6667777665 69
Q ss_pred EEEeCCCC----CCCccHHhhcccCCC----------CChHHHHHHHHHhcHHHHHHhcCCCchh---hhCCCCCCChhH
Q psy1502 417 SIIPQDPV----LFSGTLRKNLDPFEK----------YPDYVLWTALQEVELKDMIMEGAGLNMT---VYEGGTNFSVGQ 479 (597)
Q Consensus 417 ~~V~Q~~~----LF~gTI~eNI~~~~~----------~~~e~i~~a~~~a~l~~fI~~l~GldT~---vge~G~~LSGGQ 479 (597)
+|||.|-. .-+.|+.||+.+... .+..++.+.++ +.+++ ||-. ....-.+||||+
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~---fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEE---FDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHH---cCccCCCCCcchhhcCCcc
Confidence 99999873 567899999965321 12233332222 33333 3322 123346899999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +++.+++|+-.|..+.. ||||.||.+|+|+.
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999999999999999999987765 58899999999999965 99999999999987
No 390
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.89 E-value=6.2e-20 Score=183.90 Aligned_cols=228 Identities=16% Similarity=0.281 Sum_probs=172.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYF--SLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFE 104 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 104 (597)
+...+.++.++..|.++..+++........ .....+...++ ++.++.........+...+.+.++..++|.++++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (275)
T PF00664_consen 6 LLSILSGLLSLLFPLLLGQIIDSLSSGNSD---NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFE 82 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888874433211 00111111111 1222223333344445667889999999999999
Q ss_pred HHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 105 AVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYL 184 (597)
Q Consensus 105 ~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~ 184 (597)
+++++|+++|+++++|++++|+++|++.+++.+...+..++..++.++++++++++++|.++++++++.++.+++...+.
T Consensus 83 ~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 162 (275)
T PF00664_consen 83 KLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFS 162 (275)
T ss_dssp HHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888887777777787
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLC 257 (597)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (597)
+..++..+......++..+.+.|.++|+++||+||.|+++.++|++..++..+...+......+.......+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (275)
T PF00664_consen 163 KKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFIS 235 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666777788999999999999999999999999999999888766555444444444444444433
No 391
>KOG0062|consensus
Probab=99.89 E-value=1.5e-22 Score=211.69 Aligned_cols=201 Identities=21% Similarity=0.283 Sum_probs=163.2
Q ss_pred ccEEEEeeEEEeCCCC-ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
..+++.+|+|.|+.++ +.+.++++.+..-+++++||++|+||||+++++.+ +.|+.|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 4699999999995444 79999999999999999999999999999999998 678899988765 7889
Q ss_pred EEEeCCCCCCCccHHhhcc-------cCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCC-CCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSGTLRKNLD-------PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG-TNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~-------~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G-~~LSGGQrQRIaIARA 488 (597)
+|-.|.-.=| ..-|.. ..+.-++||+++.|...|+ +-.+.-.+ ..||||||-|+++|-.
T Consensus 430 ~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl----------~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 430 KYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL----------SGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred cchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC----------CchhhhccccccCCcchhHHHHHHH
Confidence 9999865433 222221 1223378888887766655 43344333 5799999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCc--hhHhhHhhh
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFG--FFFSKDLIE 565 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g--~y~~l~~~~ 565 (597)
...+|.+|+|||||..||-++-..+-++|++. +--||+|||..+.+.. |+.+.+.+||++..-..+ .|+++...+
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~~e 574 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAE 574 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHHHH
Confidence 99999999999999999999999999999987 3479999999999986 999999999999872233 466666543
No 392
>KOG0927|consensus
Probab=99.87 E-value=8.4e-22 Score=207.12 Aligned_cols=204 Identities=19% Similarity=0.305 Sum_probs=139.0
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceE--EEcceeCCCCChHHHhc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVI--KIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I--~idg~di~~~~~~~lr~ 414 (597)
...|.++|++++|+ +.++++|..|++.+|+++||+|++||||||+++.|.+ .+|..-++ +.-. +++.+..+..
T Consensus 73 s~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls---~e~~ps~~~a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS---REIEPSEKQA 148 (614)
T ss_pred cccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc---ccCCCchHHH
Confidence 34699999999996 4679999999999999999999999999999999997 55522222 1111 1122211111
Q ss_pred CcEEEeCCCCCCCccHHhhc-------ccC-CCCChH---HHHHHHHHhcHHHHHHh----c--CCCc-hhhhCCCCCCC
Q psy1502 415 NISIIPQDPVLFSGTLRKNL-------DPF-EKYPDY---VLWTALQEVELKDMIME----G--AGLN-MTVYEGGTNFS 476 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI-------~~~-~~~~~e---~i~~a~~~a~l~~fI~~----l--~Gld-T~vge~G~~LS 476 (597)
+ |....+..+-+--+ .-. ++.+.+ ++++-+...+.+.|-.. + .|+. ......-.+||
T Consensus 149 -v----~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 149 -V----QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred -H----HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 0 11111222222222 111 111111 22332322332222111 2 2333 33445568999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCc-EEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC-TVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||-|+++||||+.+|++|+|||||.+||.++-..+.+-|.+. ++ |+++++|.-.++-. |-.|+.|++++.+-
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~ 299 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIY 299 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceee
Confidence 99999999999999999999999999999999999999999887 45 89999999999976 99999999999654
No 393
>KOG0066|consensus
Probab=99.87 E-value=7.6e-22 Score=201.51 Aligned_cols=191 Identities=22% Similarity=0.290 Sum_probs=143.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-+-+.||+|.||+.+|.+++++|-|.--+.||||||+|.|||||++||.| +-|..|+..=+. |=+||+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGW 654 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeec
Confidence 36789999999999999999999999999999999999999999999999 557889876432 457888
Q ss_pred EeCCCC--CC-CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPV--LF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~--LF-~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
..|..- |- ..|-.|-+.-.-+.+.++.+.++-.-++..- -+|. .-..||||||-|+++|---++.|+|
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sH------AHTi---kikdLSGGQKaRValaeLal~~PDv 725 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASH------AHTI---KIKDLSGGQKARVALAELALGGPDV 725 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhc------cceE---eeeecCCcchHHHHHHHHhcCCCCE
Confidence 888642 11 1233333321113444544444444333211 1221 2368999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcC-EEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSD-KVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D-~Iivl~~G~Ive 552 (597)
|||||||.+||.++-..+-++|++. +-.||||+|.-..|...| ..+|+++-.|-|
T Consensus 726 lILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 726 LILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred EEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 9999999999999999999999987 457999999988886533 456677655554
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=3.4e-21 Score=183.82 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=72.4
Q ss_pred CCCchhhhCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH
Q psy1502 462 AGLNMTVYEGGTNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT~vge~G~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti 536 (597)
+|-.|++ ||||||||++||||+. .+|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+
T Consensus 88 ~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~ 161 (178)
T cd03239 88 QGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF 161 (178)
T ss_pred CCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 5555555 9999999999999984 79999999999999999999999999988755 48999999999999
Q ss_pred hhcCEEEEEeC
Q psy1502 537 MDSDKVLVMDS 547 (597)
Q Consensus 537 ~~~D~Iivl~~ 547 (597)
..||+++++++
T Consensus 162 ~~adrvi~i~~ 172 (178)
T cd03239 162 ENADKLIGVLF 172 (178)
T ss_pred hhCCeEEEEEE
Confidence 99999999976
No 395
>KOG0062|consensus
Probab=99.85 E-value=5.5e-22 Score=207.39 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=130.4
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
..+|..+|.+.+|. ++..|++-++++..|.+.|+|||+|+|||||++.|.. |.|.+-.+. +..|.--.
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~ve------qE~~g~~t 145 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVE------QEVRGDDT 145 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCch------hheeccch
Confidence 35799999999996 5679999999999999999999999999999999987 333221110 00011000
Q ss_pred EEeCCCCCCCccHHhhcccCC-----CCChHHHHH-HHHHhcHHHHHHhcCCCchhhhCC-CCCCChhHHHHHHHHHHHc
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFE-----KYPDYVLWT-ALQEVELKDMIMEGAGLNMTVYEG-GTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~-----~~~~e~i~~-a~~~a~l~~fI~~l~GldT~vge~-G~~LSGGQrQRIaIARAll 490 (597)
...|+ .+-.+|-+.-+..-+ ..+.+|+.. +++- .|+....-++ -..||||-|=|+|+|||++
T Consensus 146 ~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g----------lGFt~emq~~pt~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 146 EALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAG----------LGFTPEMQLQPTKSLSGGWRMRLALARALF 214 (582)
T ss_pred HHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh----------CCCCHHHHhccccccCcchhhHHHHHHHHh
Confidence 11111 112222222221100 002222222 2222 3555444333 3589999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
.+||||+|||||..||..+-..+.+-|..+ ..|+|+|+|+-+.+.. |--|+.+++-++
T Consensus 215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred cCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999887 3899999999999976 888888887554
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=6.9e-21 Score=196.29 Aligned_cols=180 Identities=23% Similarity=0.350 Sum_probs=135.0
Q ss_pred eeEEEeCCCCccceeeeEEE-----cCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 345 NTNVRYLSGPRVIKNLNITI-----HPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I-----~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
+.-++|++-...+.+..|++ ..||.++++||+|-||||++++|+|. .|++|. ..+ -.|+|
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 44455554444455666665 45688999999999999999999995 578887 222 36889
Q ss_pred EeCCCC-CCCccHHhhcccCC-C-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPV-LFSGTLRKNLDPFE-K-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~-LF~gTI~eNI~~~~-~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
=||-.. -|+||+++=+.-.. . +.+.-.+ ..|..+..++-.+...-.+||||+.||+|||-||.|++++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~---------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl 476 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFK---------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL 476 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhH---------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE
Confidence 999533 48899988774311 1 2221111 1122233445555556678999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
++||||++.||.+..-.+-++|++... ++|.++|-|++-.+.. +||++|.+.
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999998888999988764 6899999999999975 899999975
No 397
>KOG2355|consensus
Probab=99.84 E-value=3.3e-20 Score=173.21 Aligned_cols=200 Identities=17% Similarity=0.205 Sum_probs=152.0
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC-CCh------
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED-VPL------ 409 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~-~~~------ 409 (597)
...|++.++.|+|+...|++-|+|+++|+|....+||.+|||||||+|+|.|=. .-.|.|.+.|.+--. -++
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 456999999999987779999999999999999999999999999999999954 344999999986432 111
Q ss_pred ----HHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHH--hc-CCCchhhhCCCCCCChhHHHH
Q psy1502 410 ----SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM--EG-AGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 410 ----~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~--~l-~GldT~vge~G~~LSGGQrQR 482 (597)
.+|++..+.-- +..|- .+++-+++ +.-++-.+|.. .+ +=+|--+--+-..+|-|||.|
T Consensus 91 ~YLGgeW~~~~~~ag-evplq-----------~D~sae~m---ifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAG-EVPLQ-----------GDISAEHM---IFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRR 155 (291)
T ss_pred eEecccccccccccc-ccccc-----------ccccHHHH---HhhccCCChhHhhhhhhheeccceEEEeeccccchhh
Confidence 12222222221 11111 12332222 22222223321 13 445655667778999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+.|+-.||+.=++|+|||.|--||.-....+.+-+++.+ +++|++..||-..-+.. ..+++.+.+|+++.
T Consensus 156 VQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 156 VQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999999999999999999998765 47899999999998875 89999999999998
No 398
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.83 E-value=2.2e-21 Score=193.74 Aligned_cols=186 Identities=19% Similarity=0.152 Sum_probs=131.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccccC---CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV---EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~---~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
+.+.+||+++|+||+|+|||||++.+.+..+. +..+.+-...-+..+..++.+.+. ..++-.+ ++
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~-----~~~v~~~------~~- 78 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK-----GEVIAST------FD- 78 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhc-----cEEEEec------CC-
Confidence 57889999999999999999999999986643 223333333333355555555540 0001000 11
Q ss_pred CCChHHH---HHHHHHhc-----------HHHHHHhc-CCCchhhhCCCCCCChhH--------HHHHHHHHHHccCCCE
Q psy1502 439 KYPDYVL---WTALQEVE-----------LKDMIMEG-AGLNMTVYEGGTNFSVGQ--------RQLICLARAIVRNNVI 495 (597)
Q Consensus 439 ~~~~e~i---~~a~~~a~-----------l~~fI~~l-~GldT~vge~G~~LSGGQ--------rQRIaIARAll~~p~I 495 (597)
.....++ ..+...|. +-|.+..+ +++++.+|+.|.++|||| +||+++||+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 1111111 11111111 11234455 799999999999999999 9999999999999999
Q ss_pred EEeecCCCCCCHHHHHH-HHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE---ecCchhHhhHh
Q psy1502 496 LVLDEATANVDPKTDLL-IQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV---SSFGFFFSKDL 563 (597)
Q Consensus 496 LILDEaTSaLD~~te~~-I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive---~~~g~y~~l~~ 563 (597)
.+| ||+++|+.+|.. ++ ++++. .++|.|+++||+++..++|.|.||+.|.+.+ ..++.|+.++.
T Consensus 159 t~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 159 TII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEELQRMWL 227 (249)
T ss_pred EEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCCHHHHHHHHH
Confidence 999 999999877764 44 44444 5789999999999999999999999999987 45667777754
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=3.6e-20 Score=173.34 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=159.1
Q ss_pred EEEeeEEEe--CC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHHh
Q psy1502 342 EFQNTNVRY--LS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 342 ~f~nVsf~Y--~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~lr 413 (597)
.++|++..+ +. .-.+.+++|++.+.||.-|+||.||||||-++|.|+|... +.-+..+|++|+-.+++...|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 345555544 22 2358999999999999999999999999999999999642 457788999999999998877
Q ss_pred c----CcEEEeCCCCCCCc---c----HHhhcc---cC-C-----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCC
Q psy1502 414 S----NISIIPQDPVLFSG---T----LRKNLD---PF-E-----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473 (597)
Q Consensus 414 ~----~I~~V~Q~~~LF~g---T----I~eNI~---~~-~-----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~ 473 (597)
+ .|++++|+|.-.-+ + +-+||- |. + .....+..+.+.++|+.|--.-+..|- .
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-------~ 157 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-------Y 157 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-------c
Confidence 6 57899999975533 2 346663 21 1 123455667788888854322222232 3
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeE
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~I 550 (597)
.|-.|+-|++.||-|+..+|++||-||||.++|+.|...|...|.++-+ +.|++.|+|++.++. .||+|-||-=|+-
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 4556777999999999999999999999999999999999998877643 679999999999996 5999999999998
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
+|
T Consensus 238 ~E 239 (330)
T COG4170 238 VE 239 (330)
T ss_pred cc
Confidence 88
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=6.5e-20 Score=187.51 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 474 NFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
.|||||+||+++||+++. +|+++||||||++||+.+...+.+.|.+..+++|+|+|||++.....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997654 9999999999999999999999999999888899999999999888999999999875
Q ss_pred E
Q psy1502 550 A 550 (597)
Q Consensus 550 I 550 (597)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=3.2e-20 Score=182.24 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=110.5
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHh------cCcEEEeCCCCCCCcc-
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLR------SNISIIPQDPVLFSGT- 429 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr------~~I~~V~Q~~~LF~gT- 429 (597)
+++.+++.+| ..+|+|++|||||||+..|.- ++...... . +.-...++. ..|-...+.. +..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~-----r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-G-----RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-c-----cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 3455555444 568999999999999999864 43211100 0 000111110 1111111110 000
Q ss_pred HHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHH----HccCCCEEEeecCCCC
Q psy1502 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARA----IVRNNVILVLDEATAN 504 (597)
Q Consensus 430 I~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARA----ll~~p~ILILDEaTSa 504 (597)
-.+|+.. -.+.+.+.+++..... |.+..+ .+.+.. ..+...||||||||+++|++ ++.+|+++|+||||++
T Consensus 85 ~~~n~~~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~ 160 (213)
T cd03277 85 QVDNLCQ--FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG 160 (213)
T ss_pred ccCCceE--EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc
Confidence 1333331 1234455555555444 444444 444322 45678999999999887755 4689999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCC---cEEEEeccCchhHh-hcC--EEEEEeCCe
Q psy1502 505 VDPKTDLLIQRTIRKKFAD---CTVLTIAHRLHTIM-DSD--KVLVMDSGV 549 (597)
Q Consensus 505 LD~~te~~I~~~l~~~~~~---~TvI~IaHrlsti~-~~D--~Iivl~~G~ 549 (597)
||+.+...+.+.|.+..+. .|+|+|||++..+. .|| +|++|++|+
T Consensus 161 LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 161 MDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999887543 47999999985554 455 889999996
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.81 E-value=1e-19 Score=177.24 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=106.4
Q ss_pred ceeeeEEEcCCc-EEEEEcCCCCCHHHHHHHHh-cc-ccCCc-eEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 357 IKNLNITIHPKE-KIGIVGRTGAGKSSLIAAIF-RL-AEVEG-VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 357 L~~isl~I~~G~-~vaIVG~SGsGKSTL~~LL~-~l-~~~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
.-++||++++|+ .++|+||+|||||||++.|. .. .+..| .+-... ...++|++|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-----------~~~~~~~~~~~~~l------ 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-----------GSSLPVFENIFADI------ 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-----------cccCcCccEEEEec------
Confidence 457899999996 69999999999999999987 21 12222 110000 01233433331100
Q ss_pred hcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHH
Q psy1502 433 NLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512 (597)
Q Consensus 433 NI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~ 512 (597)
|.+..+.++-..+|+|+||+..|++++ .+|+++++||||+++|+++...
T Consensus 80 ------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~ 128 (200)
T cd03280 80 ------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAA 128 (200)
T ss_pred ------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHH
Confidence 111112233358999999999999985 8999999999999999999888
Q ss_pred HHH-HHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 513 IQR-TIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 513 I~~-~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.. .++.+. .+.|+|++||.....+.||++++|++|+++.
T Consensus 129 i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~ 170 (200)
T cd03280 129 LAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEF 170 (200)
T ss_pred HHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEE
Confidence 754 455544 3789999999977778899999999999976
No 403
>KOG0065|consensus
Probab=99.78 E-value=2.4e-19 Score=205.88 Aligned_cols=193 Identities=21% Similarity=0.294 Sum_probs=159.0
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-cc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GT 429 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gT 429 (597)
++|+|+|.-++||+.+-+.||.|||||||++.|.|-.+ ..|+|..||.+.++... ++.++|.+|+..-|. .|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 69999999999999999999999999999999998542 46899999999999887 889999999998886 69
Q ss_pred HHhhcccC-------CCCChHHHHHHHHHhcHHHHHHh---c-CCCchhhhCCC-CCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 430 LRKNLDPF-------EKYPDYVLWTALQEVELKDMIME---G-AGLNMTVYEGG-TNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 430 I~eNI~~~-------~~~~~e~i~~a~~~a~l~~fI~~---l-~GldT~vge~G-~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
+||-|.+. ..++ ++.+--+.+...|.+.+ + ...||.||.+. ...|||||.|+++|-++..+|+++.
T Consensus 206 VreTldFa~rck~~~~r~~--~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYD--EVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred EeehhhHHHhccCCccccc--cccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 99999742 1122 11111122224454443 4 67899999774 5799999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCch--hHhhcCEEEEEeCCeEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH--TIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrls--ti~~~D~Iivl~~G~Ive 552 (597)
+||+|-+||+.|.-.+.++|+++.. +.|.++.=|..+ +..-.|.|++|.+|+++-
T Consensus 284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy 342 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY 342 (1391)
T ss_pred eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE
Confidence 9999999999999999999988754 677777777654 456689999999999986
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=1.9e-18 Score=162.60 Aligned_cols=134 Identities=20% Similarity=0.300 Sum_probs=99.1
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHHhhcccCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
++.+.++..+.|+||+||||||+++.+.-. ...+|.+.- +.+. +.+ .+|+...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc----------cCCCcceeeEEEE------------
Confidence 445556679999999999999999997643 344444432 0000 111 122222111
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHH
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~ 514 (597)
+... ..||+||+||+++||+|.. +|+++|||||++++|++....+.
T Consensus 72 -------------------i~~~-----------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~ 121 (162)
T cd03227 72 -------------------IFTR-----------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA 121 (162)
T ss_pred -------------------ehhe-----------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0000 1199999999999999987 78999999999999999999999
Q ss_pred HHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 515 RTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 515 ~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
+.+.+... ++|+|++||++.....+|+++.|+.
T Consensus 122 ~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 122 EAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99987654 5899999999999999999999975
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=2.1e-18 Score=176.10 Aligned_cols=177 Identities=25% Similarity=0.400 Sum_probs=136.1
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--------c-cCCceEEEcceeCCCCChHHHhcCcEEEeC--CC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--------A-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ--DP 423 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--------~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q--~~ 423 (597)
.+|+|+||+|+||+.++|||+|||||||++.+|+|. | |++|.|.+--..+ -+.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 589999999999999999999999999999999995 3 5689887632222 123443 33
Q ss_pred CCCCccHHhhcccCCCCCh-HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 424 VLFSGTLRKNLDPFEKYPD-YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 424 ~LF~gTI~eNI~~~~~~~~-e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
.+=.-||.|.+.- ...| ..-.+.+..+++.|-+-- - ..-..||-|||-|..||+++...|.+++.||.-
T Consensus 466 ~f~~~tilehl~s--~tGD~~~AveILnraGlsDAvly----R----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 466 EFGEVTILEHLRS--KTGDLNAAVEILNRAGLSDAVLY----R----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred ccCchhHHHHHhh--ccCchhHHHHHHHhhccchhhhh----h----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 3333477777642 2222 223466777777553321 1 123479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
|.||+.|..+|...|.++. .+.|+++||||.+.+.. -|.++.+-=|+...
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 9999999999999999887 68899999999998875 49999887776543
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=9.9e-18 Score=173.16 Aligned_cols=190 Identities=21% Similarity=0.271 Sum_probs=126.5
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEE-----------EcceeCCCCChHHH
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIK-----------IDDIDTEDVPLSKL 412 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~-----------idg~di~~~~~~~l 412 (597)
++.-+|..+-..|-++- ..++|+.+||+|++|-||||-+++|.| +.|.=|+-- +-|..+.+|=..-+
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 46778843322343332 256999999999999999999999999 445434320 11111111100000
Q ss_pred ----h--cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 413 ----R--SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 413 ----r--~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
| .++-||.-=|-.+.|++.|=+.- +-+.-..++.++. -+++..+..+-..||||+-||+|||
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~-----------~de~g~~devve~-l~L~nvl~r~v~~LSGGELQr~aIa 225 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKK-----------VDERGKFDEVVER-LGLENVLDRDVSELSGGELQRVAIA 225 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHh-----------hhhcCcHHHHHHH-hcchhhhhhhhhhcCchHHHHHHHH
Confidence 0 11222222333444444443321 1111123344444 3566677777789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
-|++|+++++++|||||-||....-.+-+.|+++.+ +++||+|-|+|..+.. +|-|-++-.
T Consensus 226 a~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 226 AALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999999999998888889999887 6999999999999975 798887754
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=9.7e-18 Score=165.64 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=111.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHH
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~ 431 (597)
.+.+.+|+++++++|+.++|.||+||||||+++.+.-. .+..++| +||.+...+. +.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe--cc
Confidence 34689999999999999999999999999999999721 2344555 7777642221 11
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecC---CCCCC
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRNNVILVLDEA---TANVD 506 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~p~ILILDEa---TSaLD 506 (597)
+.|. ... |++-.. ..++|.|++|+..+|+++ +.+|+++||||| |+++|
T Consensus 74 ~~il--------------~~~----------~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 74 DCIL--------------ARV----------GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ceeE--------------eee----------ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 1110 011 111111 357999999999999999 999999999999 99999
Q ss_pred HHHHHHH-HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 507 PKTDLLI-QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 507 ~~te~~I-~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+...... .+.+.+ ..++|+|++||..+....||++..+++|++..
T Consensus 127 ~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~ 172 (222)
T cd03285 127 GFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTA 172 (222)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEE
Confidence 9876543 355544 24789999999755556699999999999976
No 408
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5.7e-17 Score=165.28 Aligned_cols=189 Identities=19% Similarity=0.258 Sum_probs=113.9
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----------c------C-----------------------Cc--
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----------E------V-----------------------EG-- 395 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----------~------~-----------------------~G-- 395 (597)
++.++++++| ..+|+|||||||||++..|.-+. + + +|
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4566777775 68899999999999998764210 0 0 01
Q ss_pred eEEEcceeCCC-CChHHHhcCcEEEeCCCCCCCccHHhhcccCCC---CChHHHHH---HHHHh--cHHHHHHhc--CCC
Q psy1502 396 VIKIDDIDTED-VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK---YPDYVLWT---ALQEV--ELKDMIMEG--AGL 464 (597)
Q Consensus 396 ~I~idg~di~~-~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~~~e~i~~---a~~~a--~l~~fI~~l--~Gl 464 (597)
.+.+||..++. -+...+...|.+.|++..|+.++-.+-..+.+. -.+.+..+ ..+++ +..+....+ +-+
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~d~l 171 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHRDDL 171 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCChhhe
Confidence 33455655543 112223345666777777875443333222110 01122111 11111 011111122 222
Q ss_pred chhhh--CCCCCCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 465 NMTVY--EGGTNFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 465 dT~vg--e~G~~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
.-.+. +.-.-+|+||+|+++|||+|. .+|+++||||||++||+.....+.+.+.+.. .+++++|..
T Consensus 172 ~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~ 248 (270)
T cd03242 172 LFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDL 248 (270)
T ss_pred EEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCc
Confidence 22222 222347999999999999974 8999999999999999999999999998752 455566655
Q ss_pred hhHhh-c---CEEEEEeCCeE
Q psy1502 534 HTIMD-S---DKVLVMDSGVA 550 (597)
Q Consensus 534 sti~~-~---D~Iivl~~G~I 550 (597)
..+.+ | ++|+.+++|+|
T Consensus 249 ~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 249 ADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccchhccCccEEEEeCcEE
Confidence 55544 5 78999999986
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.5e-16 Score=174.57 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=82.7
Q ss_pred CCCch-hhhCCCCCCChhHHHHHHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 462 AGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT-~vge~G~~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
-|+.. .+|.....||||+.|||-+|.-|.|.+ -++||||||-+|-.+--+.+++.|.++. +|.|||+|-|.|..|
T Consensus 809 VGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI 888 (935)
T COG0178 809 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI 888 (935)
T ss_pred cCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE
Confidence 36655 479999999999999999999999988 8999999999999999999999998876 488999999999999
Q ss_pred hhcCEEEEE------eCCeEEE
Q psy1502 537 MDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 537 ~~~D~Iivl------~~G~Ive 552 (597)
+.||+|+-| +.|+|+.
T Consensus 889 k~AD~IIDLGPeGG~~GG~iva 910 (935)
T COG0178 889 KTADWIIDLGPEGGDGGGEIVA 910 (935)
T ss_pred eecCEEEEcCCCCCCCCceEEE
Confidence 999999999 5678887
No 410
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.71 E-value=8.9e-18 Score=144.62 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=71.8
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
.++|++++|++++|+.++|+||||||||||+++++ +|.+.++|.|+..++.+..++.++++||+ +|.+|||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 46899999999999999999999999999999987 89999999999999999999999999999 999999999
Q ss_pred ccc
Q psy1502 434 LDP 436 (597)
Q Consensus 434 I~~ 436 (597)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 975
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.69 E-value=1.4e-16 Score=192.06 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=81.2
Q ss_pred CCch-hhhCCCCCCChhHHHHHHHHHHHccC---CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh
Q psy1502 463 GLNM-TVYEGGTNFSVGQRQLICLARAIVRN---NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM 537 (597)
Q Consensus 463 GldT-~vge~G~~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~ 537 (597)
|+.. .+|+.-..|||||.|||-||.-|.++ +.++||||||.+|++..-+.+.+.|+++. .+.|+|+|.|++..++
T Consensus 1687 GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~ 1766 (1809)
T PRK00635 1687 GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLK 1766 (1809)
T ss_pred CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 5544 47999999999999999999999986 78999999999999999999999998875 4799999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|+-| +.|+|+.
T Consensus 1767 ~aD~iidlgp~gG~~GG~iva 1787 (1809)
T PRK00635 1767 QADYLIEMGPGSGKTGGKILF 1787 (1809)
T ss_pred hCCEEEEcCCCcccCCCEEEE
Confidence 99999999 5578887
No 412
>KOG0066|consensus
Probab=99.68 E-value=6.8e-17 Score=165.52 Aligned_cols=220 Identities=21% Similarity=0.256 Sum_probs=151.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-c-cc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-R-LA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~-l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+|.++|.+.+- .++..+-|-||.|-.|...|+|||+|-|||||++-|. | |- |+.=.+++
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLl----------------- 325 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLL----------------- 325 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEe-----------------
Confidence 47888877765 3566889999999999999999999999999999997 4 32 54433333
Q ss_pred EEEeCCCCCCCccHHhhc---------------------ccCCCCChHHHHHH---HHHhcHHH---HHHh-c--CCCch
Q psy1502 417 SIIPQDPVLFSGTLRKNL---------------------DPFEKYPDYVLWTA---LQEVELKD---MIME-G--AGLNM 466 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI---------------------~~~~~~~~e~i~~a---~~~a~l~~---fI~~-l--~GldT 466 (597)
+.|+..-=+.|--+-+ .-|..--.|++.++ ++..+++. -... + -|++-
T Consensus 326 --CEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk 403 (807)
T KOG0066|consen 326 --CEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK 403 (807)
T ss_pred --eeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh
Confidence 3333322222111111 01111111222222 22222211 0111 2 47777
Q ss_pred hhhCCC-CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEE
Q psy1502 467 TVYEGG-TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLV 544 (597)
Q Consensus 467 ~vge~G-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iiv 544 (597)
.+-++. ..+|||-|-|+++||||+-.|-+|.|||||..||-..--.+-.-|+.+ .+|.++|+|.-..+.+ |..|+.
T Consensus 404 EMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 404 EMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred hHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhh
Confidence 777775 589999999999999999999999999999999998877776677766 5899999999999986 999999
Q ss_pred EeCCeEEE--ecCchhHhhHhhhcccchHHHHHHHhHhH
Q psy1502 545 MDSGVAVV--SSFGFFFSKDLIEGTVSAKVLSSRKRREK 581 (597)
Q Consensus 545 l~~G~Ive--~~~g~y~~l~~~~~~~~~~~~~~~~~~~~ 581 (597)
||+-++-- .....|++||.+...+..+.+.++.++-+
T Consensus 482 LD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~Lk 520 (807)
T KOG0066|consen 482 LDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLK 520 (807)
T ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99977654 33456888888776666666555544433
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.67 E-value=1e-16 Score=155.78 Aligned_cols=139 Identities=18% Similarity=0.141 Sum_probs=94.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC-CccHH
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF-~gTI~ 431 (597)
+++|++|++|+. |+.++|+||||||||||++.|.+... +..+|.++.. + ++++|...+| ..|++
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~a-------~--~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVCA-------S--SFELPPVKIFTSIRVS 77 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEec-------C--ccCcccceEEEeccch
Confidence 345888887665 79999999999999999999987431 1124444321 1 2566655566 46999
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
||+..+.....++..+ +.+.++.. + +++|+++||||||+++|+.+..
T Consensus 78 d~l~~~~s~~~~e~~~------~~~iL~~~-~--------------------------~~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 78 DDLRDGISYFYAELRR------LKEIVEKA-K--------------------------KGEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred hccccccChHHHHHHH------HHHHHHhc-c--------------------------CCCCeEEEEecccCCCCHHHHH
Confidence 9998754332333222 22222221 1 0799999999999999999877
Q ss_pred HHHH-HHHHhc-CCcEEEEeccCchhHhhc
Q psy1502 512 LIQR-TIRKKF-ADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 512 ~I~~-~l~~~~-~~~TvI~IaHrlsti~~~ 539 (597)
.+.. .++.+. ++.|+|++||++..+...
T Consensus 125 ~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 125 AASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 6644 344443 368999999999888654
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.65 E-value=2.3e-16 Score=153.89 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=98.6
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-c-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRL-A-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
|+++.+|++++|+||+|||||||++.|.+. + ...|...- ..+..+++..|....|+ ..++
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~----- 84 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDS----- 84 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccc-----
Confidence 455668999999999999999999999853 3 23343211 01233444333222111 0011
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHH-H
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT-I 517 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~-l 517 (597)
+.++-..++++++| +..+-+.+.+|+++||||||+++|+.....+... +
T Consensus 85 -----------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll 134 (202)
T cd03243 85 -----------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVL 134 (202)
T ss_pred -----------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHH
Confidence 11111345666665 6666788899999999999999999877766544 3
Q ss_pred HHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 518 RKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 518 ~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.+. .+.|+|++||+...+..||++..++.|++.+
T Consensus 135 ~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~ 170 (202)
T cd03243 135 EHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEE 170 (202)
T ss_pred HHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEE
Confidence 4332 3789999999999999999999999999887
No 415
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=4.6e-16 Score=189.59 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=103.2
Q ss_pred CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHH------HHHHHHHHccCCCEEE
Q psy1502 425 LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQ------LICLARAIVRNNVILV 497 (597)
Q Consensus 425 LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQ------RIaIARAll~~p~ILI 497 (597)
.|+||+++||.+..+++++ +.|++.+++++|+..+ .| ||.++.+| +||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4899999999995566666 7999999999999998 89 99999887 99999999 9999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhc------CCcEEEEeccCchhHhh------cCEEEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKF------ADCTVLTIAHRLHTIMD------SDKVLVM 545 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~------~~~TvI~IaHrlsti~~------~D~Iivl 545 (597)
|||||++||+.+...+.+.|.++. .+.|+|+|||++..+.. ||+.|-+
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999999999887763 36799999999999874 4555544
No 416
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.64 E-value=7.3e-16 Score=178.78 Aligned_cols=91 Identities=24% Similarity=0.326 Sum_probs=82.8
Q ss_pred CCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh
Q psy1502 462 AGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM 537 (597)
Q Consensus 462 ~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~ 537 (597)
-|++.. .+..-..|||||+|||+|||||..+| ++|||||||++||+.....+.+.|+++.. +.|+|+|+|++..+.
T Consensus 476 vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~ 555 (943)
T PRK00349 476 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR 555 (943)
T ss_pred cccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 466543 56777899999999999999999997 99999999999999999999999998754 789999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|++| ++|+|+.
T Consensus 556 ~aD~vi~LgpgaG~~~G~iv~ 576 (943)
T PRK00349 556 AADYIVDIGPGAGVHGGEVVA 576 (943)
T ss_pred hCCEEEEeccccCCCCCEEee
Confidence 99999999 9999987
No 417
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.1e-15 Score=177.07 Aligned_cols=90 Identities=27% Similarity=0.352 Sum_probs=82.2
Q ss_pred CCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh
Q psy1502 463 GLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD 538 (597)
Q Consensus 463 GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~ 538 (597)
|++.. ++.....|||||+||++|||||..+| ++|||||||++||+.+...+.+.|+++.. +.|+|+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 55543 57778899999999999999999986 89999999999999999999999988754 7899999999999999
Q ss_pred cCEEEEE------eCCeEEE
Q psy1502 539 SDKVLVM------DSGVAVV 552 (597)
Q Consensus 539 ~D~Iivl------~~G~Ive 552 (597)
||+|++| ++|+|+.
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~ 574 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVA 574 (924)
T ss_pred CCEEEEecccccCCCCEEee
Confidence 9999999 9999987
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.56 E-value=9.3e-15 Score=147.79 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHH
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i 445 (597)
+.++|+||+|||||||++.|+|+. +.+|+|.++|.++..++ ...+...++++||+..--..++.+|-. ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~~- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KAE- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HHH-
Confidence 689999999999999999999987 57899999999998775 567778889999975322234444411 000
Q ss_pred HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy1502 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525 (597)
Q Consensus 446 ~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~T 525 (597)
| -..++|+ .+|+++|+|||++ ...+...++.+..+.|
T Consensus 185 -----------------~------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~ 221 (270)
T TIGR02858 185 -----------------G------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVS 221 (270)
T ss_pred -----------------H------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCE
Confidence 0 1455666 4999999999974 2234444444446899
Q ss_pred EEEeccCchh--H------------hhcCEEEEEeCCe
Q psy1502 526 VLTIAHRLHT--I------------MDSDKVLVMDSGV 549 (597)
Q Consensus 526 vI~IaHrlst--i------------~~~D~Iivl~~G~ 549 (597)
+|+++|..+. + .-+||+++|++|+
T Consensus 222 vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 222 IIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred EEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 9999997655 3 3379999999764
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.55 E-value=8.2e-14 Score=147.67 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=66.6
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh---cC
Q psy1502 473 TNFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD---SD 540 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~---~D 540 (597)
..+|+||+|+++||+++. ++||||+||||+|.||+.....+.+.+.+. ++++++.+|.+..+.. ++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 899999999999999999999999888754 4688999998876644 46
Q ss_pred EEEEEeCCeE
Q psy1502 541 KVLVMDSGVA 550 (597)
Q Consensus 541 ~Iivl~~G~I 550 (597)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 420
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=2.6e-14 Score=139.21 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=97.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHH
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~ 431 (597)
++++.+|++|++++|+.++|.||||+||||+++.+.++. +..++| +||-.. ..-++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCCCcchhh--cCccCh
Confidence 456899999999999999999999999999999998763 122222 232221 122455
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
|||... -+.+..+.++...+|+|++|+. .+-++..+|+++|||||++++|+....
T Consensus 73 d~I~~~------------------------~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred hheeEe------------------------cCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 565321 0111123344568999999764 445578899999999999999997644
Q ss_pred HHHHH-HHHhc-CCcEEEEeccCchhHhhcC
Q psy1502 512 LIQRT-IRKKF-ADCTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 512 ~I~~~-l~~~~-~~~TvI~IaHrlsti~~~D 540 (597)
.+..+ ++.+. .++|+|++||..+.+..++
T Consensus 128 ~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 128 AISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 44332 33332 3789999999999887543
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.52 E-value=5.4e-14 Score=139.02 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=60.0
Q ss_pred CCChhHHHHHHHH----HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 474 NFSVGQRQLICLA----RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 474 ~LSGGQrQRIaIA----RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
.||||||-+++|| ..-+.++|++||||+.++||......+.+.|.+..+++-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999997 33467899999999999999999999999999998889999999999999999999876
No 422
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.51 E-value=1.5e-14 Score=162.90 Aligned_cols=88 Identities=26% Similarity=0.361 Sum_probs=80.5
Q ss_pred CCCchhhhCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEeecCC-CCCCHHHHHHHHHHHHHhcCCc
Q psy1502 462 AGLNMTVYEGG------TNFSVGQRQLICLARAIV----------RNNVILVLDEAT-ANVDPKTDLLIQRTIRKKFADC 524 (597)
Q Consensus 462 ~GldT~vge~G------~~LSGGQrQRIaIARAll----------~~p~ILILDEaT-SaLD~~te~~I~~~l~~~~~~~ 524 (597)
+++++.+++.| ..||||||||++|||||+ .+|++||||||| ++||+.+...+.+.|.++ ++.
T Consensus 450 ~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~ 528 (562)
T PHA02562 450 EEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDT 528 (562)
T ss_pred hhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCC
Confidence 67888898888 789999999999999887 599999999998 789999999999999998 789
Q ss_pred EEEEeccCchhHhhcCEEEEEeC-CeE
Q psy1502 525 TVLTIAHRLHTIMDSDKVLVMDS-GVA 550 (597)
Q Consensus 525 TvI~IaHrlsti~~~D~Iivl~~-G~I 550 (597)
|+|+|||+......||++++|++ |+.
T Consensus 529 ~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 529 NVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred eEEEEECchhchhhhhcEEEEEEECCe
Confidence 99999999998899999999987 554
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.51 E-value=8e-14 Score=137.25 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=98.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTL 430 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI 430 (597)
+.+.+|++|++++ +.++|+||+||||||+++.+.+.. . ..|.. ++ ..+..+++++| +|. -+.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~---------vp--~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF---------VP--ASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe---------ec--cccceecceee---EeccCCc
Confidence 4588999999887 999999999999999999998743 2 22321 11 11346677754 232 244
Q ss_pred HhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecC---CCCC
Q psy1502 431 RKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRNNVILVLDEA---TANV 505 (597)
Q Consensus 431 ~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~p~ILILDEa---TSaL 505 (597)
.||+..+. |-=...+..+++++ ..+|+++||||| |+++
T Consensus 83 ~~~ls~g~-------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 83 SDDLAGGR-------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hhhhccCc-------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 44443321 11111223345544 469999999999 9999
Q ss_pred CHHH-HHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 506 DPKT-DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 506 D~~t-e~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|... ...+.+.+.+. .++|+|++||.......+|++-.+++|++..
T Consensus 126 D~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~ 172 (216)
T cd03284 126 DGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAV 172 (216)
T ss_pred HHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEE
Confidence 9865 34555666543 3789999999987777788887778888765
No 424
>KOG0063|consensus
Probab=99.47 E-value=2.7e-13 Score=139.49 Aligned_cols=180 Identities=21% Similarity=0.305 Sum_probs=136.2
Q ss_pred EEeCCCCccceeeeEEEcCCc-----EEEEEcCCCCCHHHHHHHHhccc-cC-CceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 348 VRYLSGPRVIKNLNITIHPKE-----KIGIVGRTGAGKSSLIAAIFRLA-EV-EGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 348 f~Y~~~~~vL~~isl~I~~G~-----~vaIVG~SGsGKSTL~~LL~~l~-~~-~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+.+.-+-+..|.|+.|+ .+-..|.+|-||||++++++|.. |+ .|+|-. =.|+|=|
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~--------------lnVSykp 408 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV--------------LNVSYKP 408 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--------------cceeccc
Confidence 678877778889999999985 57888999999999999999954 54 466543 2577888
Q ss_pred CCCC-CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 421 QDPV-LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 421 Q~~~-LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|... =|.+|+|+=+. +.++.+-..-++...+.++-..+..++..-.+||||+.||+|||=+|=+.+++++.|
T Consensus 409 qkispK~~~tvR~ll~-------~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliD 481 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLH-------TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLID 481 (592)
T ss_pred cccCccccchHHHHHH-------HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec
Confidence 8644 56788887652 334444333333333344433455567777899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHh--cCCcEEEEeccCchhHh-hcCEEEEEeCC
Q psy1502 500 EATANVDPKTDLLIQRTIRKK--FADCTVLTIAHRLHTIM-DSDKVLVMDSG 548 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~--~~~~TvI~IaHrlsti~-~~D~Iivl~~G 548 (597)
||.+-||++.....-+.+++. ..++|-.+|-|.+-... -|||++|.+.-
T Consensus 482 EpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 482 EPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred CchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 999999998766555555553 35789999999987775 49999999863
No 425
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.39 E-value=7.1e-13 Score=148.64 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 473 TNFSVGQRQLICLARAIVRN----NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~----p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999885 69999999999999999999999999988899999999999999999999999886
Q ss_pred e
Q psy1502 549 V 549 (597)
Q Consensus 549 ~ 549 (597)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=4.3e-12 Score=124.70 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=92.6
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC--ccH
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS--GTL 430 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~--gTI 430 (597)
.|-+|+++.=..+.+++|+||+|+|||||++.+... ....|...... .-.++|..|...-++ +|+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 455666664222389999999999999999999842 34566655421 235777777643222 223
Q ss_pred HhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHH
Q psy1502 431 RKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510 (597)
Q Consensus 431 ~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te 510 (597)
.+++. .| --+-||+++|+++..+|+++|||||++++|+...
T Consensus 86 ~~~~S--------------------~f-------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 86 SSGQS--------------------AF-------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred hhccc--------------------hH-------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 22221 11 1234999999999999999999999999999754
Q ss_pred HHH-HHHHHHhcC----CcEEEEeccCchhHhhcC
Q psy1502 511 LLI-QRTIRKKFA----DCTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 511 ~~I-~~~l~~~~~----~~TvI~IaHrlsti~~~D 540 (597)
..+ ...++.+.+ ..++|++||.++.+....
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 434 445555542 248999999999987653
No 427
>PRK10869 recombination and repair protein; Provisional
Probab=99.36 E-value=1.8e-12 Score=144.35 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=72.0
Q ss_pred CCCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 473 TNFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
..+||||+||++|||+++. +|+++||||||++||..+...+.+.|.++.+++|+|+|||.+..+..||++++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3689999999999999996 689999999999999999999999999998889999999999999999999999875
Q ss_pred e
Q psy1502 549 V 549 (597)
Q Consensus 549 ~ 549 (597)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 428
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.35 E-value=1.6e-11 Score=132.05 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=119.5
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeC---CC-----CChHHHhcCcEEEeCCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDT---ED-----VPLSKLRSNISIIPQDP 423 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di---~~-----~~~~~lr~~I~~V~Q~~ 423 (597)
+..+++++ |++++|++++|+|+||+|||||+++|+++++ +.|.|.+.|.+- .+ ++...+++.|.+|++..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 9999999999999999999999999999884 679999955544 43 34455778888887431
Q ss_pred CCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH----HccCCCEEEee
Q psy1502 424 VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA----IVRNNVILVLD 499 (597)
Q Consensus 424 ~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA----ll~~p~ILILD 499 (597)
+..-+++..+.-..-+.|+... .|.|-.+--+ +++ |.|-|-- .+..||
T Consensus 224 ---------------~~~~~r~~~~~~a~~iAEyfr~-~g~~Vll~~D--slt-----r~A~A~rEisl~~ge~P----- 275 (438)
T PRK07721 224 ---------------QPALMRIKGAYTATAIAEYFRD-QGLNVMLMMD--SVT-----RVAMAQREIGLAVGEPP----- 275 (438)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEe--ChH-----HHHHHHHHHHHhcCCCC-----
Confidence 1122333333333334455554 4666544321 111 2222211 134555
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKF---ADC-----TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~---~~~-----TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+|+++|+..-..+.+.+++.. ++. |+++.+|+++. .-||++.++.||+|+.
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVL 334 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEE
Confidence 789999999999998888875 364 99999999995 7799999999999997
No 429
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.34 E-value=8.1e-13 Score=130.11 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCC-----CCCCHHHHHHHHHHHHHhc
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEAT-----ANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaT-----SaLD~~te~~I~~~l~~~~ 521 (597)
-|+|++.|||+++.+|++++||||| ++||+.+...+.+.+.++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998863
No 430
>PRK13695 putative NTPase; Provisional
Probab=99.31 E-value=2e-12 Score=123.16 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=69.5
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeec--CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDE--ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDE--aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
....+||+++-++.+++..+++|+++++|| |+..+|....+.+.+.++ .++++|+++|.-..-..+|+|..+.+|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCc
Confidence 345699999999999999999999999999 555666555555555552 378999999996666779999999999
Q ss_pred eEEE----ecCchhHhhH
Q psy1502 549 VAVV----SSFGFFFSKD 562 (597)
Q Consensus 549 ~Ive----~~~g~y~~l~ 562 (597)
+|.+ +++..|....
T Consensus 152 ~i~~~~~~~r~~~~~~~~ 169 (174)
T PRK13695 152 RVYELTPENRDSLPFEIL 169 (174)
T ss_pred EEEEEcchhhhhHHHHHH
Confidence 9998 4555555443
No 431
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.30 E-value=2.7e-11 Score=139.23 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=97.1
Q ss_pred cEEEEeeEEEeCCCCcccee-----eeEEEcCC-cEEEEEcCCCCCHHHHHHHHhcc-c-cCCceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKN-----LNITIHPK-EKIGIVGRTGAGKSSLIAAIFRL-A-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~-----isl~I~~G-~~vaIVG~SGsGKSTL~~LL~~l-~-~~~G~I~idg~di~~~~~~~ 411 (597)
.+.++++.. |++++ +|+++.++ +.++|+||+|+|||||++.+.+. + +..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 477777654 33433 68888877 99999999999999999999986 2 33331
Q ss_pred HhcCcEEEeCCCC-CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 412 LRSNISIIPQDPV-LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 412 lr~~I~~V~Q~~~-LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+||.... .+ .+.+++- ....+++ .+.++-..||+|++|+..|++++
T Consensus 354 ------~Vpa~~~~~~--~~~d~i~--~~i~~~~----------------------si~~~LStfS~~m~~~~~il~~~- 400 (771)
T TIGR01069 354 ------PIPANEHSEI--PYFEEIF--ADIGDEQ----------------------SIEQNLSTFSGHMKNISAILSKT- 400 (771)
T ss_pred ------CccCCccccc--cchhhee--eecChHh----------------------HHhhhhhHHHHHHHHHHHHHHhc-
Confidence 4444321 11 1122221 1111111 01223356999999999999987
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEeccCchhH
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQR-TIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~-~l~~~~-~~~TvI~IaHrlsti 536 (597)
.+|+++|||||++++|+..-..+.. .+..+. .++++|++||....-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 7899999999999999998887744 344432 478999999997653
No 432
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.29 E-value=6e-12 Score=121.07 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred hCCCCCCChhHHHHHHHHHHHcc--CCCEEEeecCCCCCCHHHHHHHHHH-HHHhc--CCcEEEEeccCchhHhhcCEEE
Q psy1502 469 YEGGTNFSVGQRQLICLARAIVR--NNVILVLDEATANVDPKTDLLIQRT-IRKKF--ADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 469 ge~G~~LSGGQrQRIaIARAll~--~p~ILILDEaTSaLD~~te~~I~~~-l~~~~--~~~TvI~IaHrlsti~~~D~Ii 543 (597)
.++-..||+|++| +++++.. +|+++|+||||+++|+.....+... ++.+. .++++|++||..+..+.||+--
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~ 132 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHP 132 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCc
Confidence 3444678888887 4555555 9999999999999999977666444 45443 2689999999998777787533
Q ss_pred EEeCCe
Q psy1502 544 VMDSGV 549 (597)
Q Consensus 544 vl~~G~ 549 (597)
-+++++
T Consensus 133 ~v~~~~ 138 (185)
T smart00534 133 GVRNLH 138 (185)
T ss_pred cceEEE
Confidence 344443
No 433
>PRK14079 recF recombination protein F; Provisional
Probab=99.20 E-value=1.9e-10 Score=121.41 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEE
Q psy1502 473 TNFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
.-+|+||++++++|+.|. .+|||++||||||.||......+.+.|.... .++|.-+ +.-..||+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t---~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGT---EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcC---CCCCCCceEE
Confidence 467999999999999998 8999999999999999999999988886542 3444433 3345699999
Q ss_pred EEeCCeEE
Q psy1502 544 VMDSGVAV 551 (597)
Q Consensus 544 vl~~G~Iv 551 (597)
.+++|++.
T Consensus 337 ~~~~~~~~ 344 (349)
T PRK14079 337 RIEAGVFT 344 (349)
T ss_pred EEeccEec
Confidence 99999874
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.18 E-value=1.1e-10 Score=115.09 Aligned_cols=137 Identities=14% Similarity=0.040 Sum_probs=81.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+.+.+|++|.+++|++++|.||+|+||||+++.+.+.. +..|...... .-.++|.+|=- ..-.-.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-----------~~~~~~~~~i~--~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-----------SATLSIFDSVL--TRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-----------ceEEeccceEE--EEecCc
Confidence 56899999999999999999999999999999999853 5677754321 11233322211 011112
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC---HH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD---PK 508 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD---~~ 508 (597)
|++.-+...=..|+.+ ++-.=.-..+|+++|||||.++.| ..
T Consensus 85 d~~~~~~StF~~e~~~-----------------------------------~~~il~~~~~~sLvllDE~~~gT~~~d~~ 129 (222)
T cd03287 85 DSIQHGMSTFMVELSE-----------------------------------TSHILSNCTSRSLVILDELGRGTSTHDGI 129 (222)
T ss_pred cccccccchHHHHHHH-----------------------------------HHHHHHhCCCCeEEEEccCCCCCChhhHH
Confidence 2221111000112221 111111234799999999855555 44
Q ss_pred H-HHHHHHHHHHhcCCcEEEEeccCchhHhhc
Q psy1502 509 T-DLLIQRTIRKKFADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 509 t-e~~I~~~l~~~~~~~TvI~IaHrlsti~~~ 539 (597)
+ ...+.+.+.+. +++|+|++||.++.....
T Consensus 130 ~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 130 AIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 4 23455555443 478999999998876543
No 435
>PRK01156 chromosome segregation protein; Provisional
Probab=99.15 E-value=8e-11 Score=139.66 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=67.1
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC---C-cEEEEeccCchhHhhcC
Q psy1502 471 GGTNFSVGQRQLICL------ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---D-CTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 471 ~G~~LSGGQrQRIaI------ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~---~-~TvI~IaHrlsti~~~D 540 (597)
....|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.|..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999999998888864322 2 48999999999999999
Q ss_pred EEEEEe
Q psy1502 541 KVLVMD 546 (597)
Q Consensus 541 ~Iivl~ 546 (597)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.12 E-value=5.7e-10 Score=107.06 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=63.0
Q ss_pred CCCchhhhCCCCCCChhHHH------HHHHHHHHccCCCEEEeecCCCCCC---HHHHHHHHHHHHHhc-CCcEEEEecc
Q psy1502 462 AGLNMTVYEGGTNFSVGQRQ------LICLARAIVRNNVILVLDEATANVD---PKTDLLIQRTIRKKF-ADCTVLTIAH 531 (597)
Q Consensus 462 ~GldT~vge~G~~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD---~~te~~I~~~l~~~~-~~~TvI~IaH 531 (597)
.|....+......+|+||+| ....+.+.-.+|+++++||+|+.+| ......+.+.+..+. .+.|+|+++|
T Consensus 59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~ 138 (187)
T cd01124 59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSE 138 (187)
T ss_pred cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 34444555666788999999 4444444556999999999999999 666666766665543 3789999999
Q ss_pred Cchh---------Hh-hcCEEEEEe
Q psy1502 532 RLHT---------IM-DSDKVLVMD 546 (597)
Q Consensus 532 rlst---------i~-~~D~Iivl~ 546 (597)
.... +. -||.|+.|+
T Consensus 139 ~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 139 QSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCCCcccCcCceeEeeeEEEEEE
Confidence 8764 43 489999987
No 437
>PRK03918 chromosome segregation protein; Provisional
Probab=99.10 E-value=1.5e-10 Score=137.35 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEE
Q psy1502 473 TNFSVGQRQ------LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 473 ~~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl 545 (597)
..|||||+| |+||||++..+|+++||||||++||+.....+.+.|..+.. +.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 56677789999999999999999999999999999987654 57999999999988889999999
Q ss_pred eC
Q psy1502 546 DS 547 (597)
Q Consensus 546 ~~ 547 (597)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.09 E-value=2.5e-10 Score=119.82 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccce-----------eeeEEEcCCcEEEEE
Q psy1502 305 HMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIK-----------NLNITIHPKEKIGIV 373 (597)
Q Consensus 305 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~-----------~isl~I~~G~~vaIV 373 (597)
...+.+|++++++.++.... +++ ...+.|+|+||+|.||+++.+|+ |+++.|.+||+++||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~------~~e--~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD------DPE--KAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred ccccHhHHHHHhCCCccCCC------Ccc--ccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 34578999999987654211 111 23567999999999998778997 999999999999999
Q ss_pred cCCCCCHHHHHHHHhccccC---CceEEEcceeCCCCChHHHhcCc
Q psy1502 374 GRTGAGKSSLIAAIFRLAEV---EGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 374 G~SGsGKSTL~~LL~~l~~~---~G~I~idg~di~~~~~~~lr~~I 416 (597)
||+|||||||+++|.+.+.. +..+.+--.+-+..+..++.+.+
T Consensus 175 G~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred CCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 99999999999999997642 23343333333334444444443
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.08 E-value=1.9e-09 Score=107.25 Aligned_cols=156 Identities=10% Similarity=0.119 Sum_probs=88.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHH-HHHHhccccCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL-IAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL-~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+..++++..++. .+++|+.+.|+|++||||||| .+++.++... | ..+.|+
T Consensus 8 ~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g------------------~~~~yi 58 (230)
T PRK08533 8 LSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-G------------------YSVSYV 58 (230)
T ss_pred EEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-C------------------CcEEEE
Confidence 556666655543 289999999999999999999 5888886532 2 122333
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcH--HHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc----cCC
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVEL--KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV----RNN 493 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l--~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll----~~p 493 (597)
+.+- | .+++.+.++..+. .+++.. ..+. .+. -...+|+++.++-.+++.+- .+|
T Consensus 59 ~~e~-----~------------~~~~~~~~~~~g~~~~~~~~~-~~l~-~~~-~~~~~~~~~~~~~~l~~il~~~~~~~~ 118 (230)
T PRK08533 59 STQL-----T------------TTEFIKQMMSLGYDINKKLIS-GKLL-YIP-VYPLLSGNSEKRKFLKKLMNTRRFYEK 118 (230)
T ss_pred eCCC-----C------------HHHHHHHHHHhCCchHHHhhc-CcEE-EEE-ecccccChHHHHHHHHHHHHHHHhcCC
Confidence 3211 1 1111111111111 111111 0110 000 01246677666555555443 369
Q ss_pred CEEEeecCCCCC----CHHHHHHHHHHHHHhcC-CcEEEEeccCchhH--------h-hcCEEEEEe
Q psy1502 494 VILVLDEATANV----DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI--------M-DSDKVLVMD 546 (597)
Q Consensus 494 ~ILILDEaTSaL----D~~te~~I~~~l~~~~~-~~TvI~IaHrlsti--------~-~~D~Iivl~ 546 (597)
+++++||||+.+ |+...+.+.+.++.+.+ ++|++ ++|..... . -||-|+.|+
T Consensus 119 ~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi-~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 119 DVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVII-LTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEE-EEecccccccccceeEEEeeeEEEEEE
Confidence 999999999999 77766778888876644 56555 45654432 2 157777776
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.08 E-value=3.2e-10 Score=130.85 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=93.0
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~eNI 434 (597)
|=+|+++. +.+..+.|.||+++||||+++.+.-.. +-.++| +||-+.. ..-++.++|
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~-~~i~~~~~i 374 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP-SEIPVFKEI 374 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC-ccccccceE
Confidence 44455543 345679999999999999999985421 122333 4554420 011233333
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHH
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~ 514 (597)
-. ++.++ -.+..+-..||+|++|+..|+|++ .+|+++|||||++++|+.....+.
T Consensus 375 ~~--~ig~~----------------------~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 375 FA--DIGDE----------------------QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred EE--ecCCc----------------------cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHH
Confidence 21 11111 112234468999999999999999 899999999999999999887775
Q ss_pred HH-HHHhc-CCcEEEEeccCchhHhhc-CEEEE
Q psy1502 515 RT-IRKKF-ADCTVLTIAHRLHTIMDS-DKVLV 544 (597)
Q Consensus 515 ~~-l~~~~-~~~TvI~IaHrlsti~~~-D~Iiv 544 (597)
.+ +..+. .++++|++||.......+ |+..+
T Consensus 430 ~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 430 ISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred HHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 54 43332 478999999998877653 44433
No 441
>KOG0063|consensus
Probab=99.07 E-value=3e-10 Score=117.37 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=107.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCcE--------------------------
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNIS-------------------------- 417 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I~-------------------------- 417 (597)
.||+..++||.+|-||||-++.++| +.|+-|.-- + +-.|..-++
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~--------pp~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-N--------PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-C--------CcchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 5899999999999999999999998 444444321 1 111222222
Q ss_pred EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
||.|=|-.-.+++.+++.--. +.+...+++... .++......-..||||+-||.|||-+...++++.+
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~--~r~~~~~~~~~~----------~L~~~~~re~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKD--ERDNKEEVCDQL----------DLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcccHHHHHHHH----------HHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeE
Confidence 222222222233333332100 000111122211 12333334456899999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
+|||.|-||.+....--.+|+.+. .++-+|+|-|+|+.+.. .|-|.++-.
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 999999999998887777888765 47899999999999874 788887754
No 442
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.07 E-value=1.6e-10 Score=141.10 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=68.9
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 471 GGTNFSVGQRQLICLARAI----VRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAl----l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|..+.++.|+|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4458999999999999998 57889999999999999999999999999887788999999999999999999754
No 443
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=3.5e-10 Score=135.80 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCCCChhHHHHHHHHHHHcc----------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-c
Q psy1502 472 GTNFSVGQRQLICLARAIVR----------NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-S 539 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~----------~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~ 539 (597)
-..||||+++|++||+||.. +|++|+|||||++||+++-..+.+.|.++. .++||++|||....... |
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 46899999999999999985 799999999999999999999999998874 47899999999998864 8
Q ss_pred CEEEEEeCC
Q psy1502 540 DKVLVMDSG 548 (597)
Q Consensus 540 D~Iivl~~G 548 (597)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.04 E-value=1.2e-09 Score=127.29 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=56.3
Q ss_pred HccCCCEEEeecCCCCC-CHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh----------hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANV-DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM----------DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaL-D~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~----------~~D~Iivl~~G~Ive 552 (597)
+..+|+++++|||+++| |+.....+.+.++...+ +.++|++||.++.+. +||..++|.+|++.+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~ 724 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE 724 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence 35799999999999999 68999999999987654 789999999998874 799999999999865
No 445
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.04 E-value=1.2e-10 Score=124.21 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=53.1
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCc-eEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEG-VIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
++|++|||++++||.++|+||||||||||++ .++ .|++| +|.+||.++...+.+.+..-- +|.|+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~ 86 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDG 86 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHh
Confidence 5899999999999999999999999999999 444 46666 899999999887654433211 78776
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.00 E-value=8.5e-10 Score=107.28 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW 446 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~ 446 (597)
.+.|+|||||||||+++.|++..+ ..|.|..-..++ ++... ...+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E~~~~---~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-EFVHE---SKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-ccccc---Cccceeeecc-----------------------
Confidence 589999999999999999998764 357766544443 11110 1112222210
Q ss_pred HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEE
Q psy1502 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTV 526 (597)
Q Consensus 447 ~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~Tv 526 (597)
+|.+...++. ++++|+..+|+++++||+. |.++-..+.++ ...+.++
T Consensus 56 ---------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~---a~~G~~v 102 (198)
T cd01131 56 ---------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTA---AETGHLV 102 (198)
T ss_pred ---------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH---HHcCCEE
Confidence 1111111211 4889999999999999996 77665444443 3358899
Q ss_pred EEeccCchhHhhcCEEEEEe
Q psy1502 527 LTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 527 I~IaHrlsti~~~D~Iivl~ 546 (597)
+.++|..+....+||++.|-
T Consensus 103 ~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 103 MSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEecCCcHHHHHhHHHhhc
Confidence 99999999988889987764
No 447
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.00 E-value=5.8e-10 Score=136.12 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCchhhhCCC------CCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q psy1502 463 GLNMTVYEGG------TNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532 (597)
Q Consensus 463 GldT~vge~G------~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 532 (597)
|++..|...| ..||||||++++||+++. ++||++|||||+++||+.+...+.+.|.++.++.++|+|||+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 4454554333 479999999999999997 588999999999999999999999999998888899999999
Q ss_pred chhHhhcCEEEEEeC
Q psy1502 533 LHTIMDSDKVLVMDS 547 (597)
Q Consensus 533 lsti~~~D~Iivl~~ 547 (597)
..++..||+++.+..
T Consensus 1137 ~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1137 SPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHhcceeEeEEE
Confidence 999999999987643
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.96 E-value=1.1e-09 Score=113.90 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=90.5
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
+++.+++|+.++|+|++|||||||++.|++++| ..|.+.|+ |..++.... ++.+.++.+.. -....
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~----------~~~~~ 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG----------GQGLA 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC----------CCCcC
Confidence 557788999999999999999999999999986 46777775 444443322 22233222210 00000
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHH
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~ 518 (597)
.++ ..=+++++|-.+|+++++||+.+ .+ +.+.++
T Consensus 204 ~~~---------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~l~ 237 (308)
T TIGR02788 204 KVT---------------------------------------PKDLLQSCLRMRPDRIILGELRG---DE----AFDFIR 237 (308)
T ss_pred ccC---------------------------------------HHHHHHHHhcCCCCeEEEeccCC---HH----HHHHHH
Confidence 111 11246667888999999999996 33 233444
Q ss_pred HhcCC-cEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 519 KKFAD-CTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 519 ~~~~~-~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
....+ .+++...|-.+.....||+..|-.|++..
T Consensus 238 a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~ 272 (308)
T TIGR02788 238 AVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAG 272 (308)
T ss_pred HHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccc
Confidence 44334 46799999999888899999998888765
No 449
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.94 E-value=3.5e-09 Score=117.46 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=88.1
Q ss_pred HHHHhcCCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEecc
Q psy1502 456 DMIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAH 531 (597)
Q Consensus 456 ~fI~~l~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaH 531 (597)
+|.... |++.. +......||||+.|||-||+.+-.+= =++|||||+.+|-+.--.++.++|+++.. |.|+|+|-|
T Consensus 463 ~fL~~V-GL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 463 GFLVDV-GLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHHc-CcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 344443 44443 35556799999999999999996653 47899999999999877777778877653 889999999
Q ss_pred CchhHhhcCEEEEE------eCCeEEEecCchhHhhHhhhcccchHHHH
Q psy1502 532 RLHTIMDSDKVLVM------DSGVAVVSSFGFFFSKDLIEGTVSAKVLS 574 (597)
Q Consensus 532 rlsti~~~D~Iivl------~~G~Ive~~~g~y~~l~~~~~~~~~~~~~ 574 (597)
+..+++.||+|+-| ..|+|+. +|-+.++.+...+-..+-++
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~--~Gtp~~i~~~~~SlTG~YLs 588 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVA--EGTPEELLANPESLTGQYLS 588 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEE--ccCHHHHHhCCcchhhHhhc
Confidence 99999999999998 5678987 56666666544444444333
No 450
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=4.6e-09 Score=112.40 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=113.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++-++++-.|..+-.+++++ |.+.+|++++|+|++|+|||||++.|+|... +.|.|.+.|..-+
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------- 195 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------- 195 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-------------
Confidence 456677777776555688885 9999999999999999999999999999874 5666655443321
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCC-chhhhCCCCCCChhHHHHHHHHHHHc-------
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYEGGTNFSVGQRQLICLARAIV------- 490 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~Gl-dT~vge~G~~LSGGQrQRIaIARAll------- 490 (597)
+++|.+. ..++. .|+ .|.+=-.-.+-|.|+|+|.+.+.+.+
T Consensus 196 ----------ev~e~~~-----------~~l~~----------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~ 244 (432)
T PRK06793 196 ----------EVKDFIR-----------KELGE----------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQ 244 (432)
T ss_pred ----------cHHHHHH-----------HHhhh----------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 1222211 00000 111 12222445688999999999999988
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.++-++++||+|...|+. ++|-.++.+.. .+.|..+-+|-.+..++|.+ .++|.|..
T Consensus 245 G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~ 302 (432)
T PRK06793 245 GNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITG 302 (432)
T ss_pred CCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEE
Confidence 788999999999999997 44555565544 46788888885444455554 46888765
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=4e-08 Score=88.11 Aligned_cols=116 Identities=31% Similarity=0.296 Sum_probs=84.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCC--ceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChH
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVE--GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~--G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e 443 (597)
++..+.|+||+|+||||++..|++..... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 47889999999999999999999876543 4566655444333322211
Q ss_pred HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHH-------H
Q psy1502 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR-------T 516 (597)
Q Consensus 444 ~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~-------~ 516 (597)
............+++.++..+++|-..+|+++++||+....+......... .
T Consensus 51 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~ 109 (148)
T smart00382 51 ---------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLL 109 (148)
T ss_pred ---------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHH
Confidence 112344456778889999999999998999999999999999998876653 2
Q ss_pred HHHhcCCcEEEEeccC
Q psy1502 517 IRKKFADCTVLTIAHR 532 (597)
Q Consensus 517 l~~~~~~~TvI~IaHr 532 (597)
......+..+|..+|.
T Consensus 110 ~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 110 LLKSEKNLTVILTTND 125 (148)
T ss_pred HHHhcCCCEEEEEeCC
Confidence 3334456788888884
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.89 E-value=1.5e-08 Score=94.13 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH----------HHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPK----------TDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~----------te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
..+.++.++++.+++...+|+++|+||+++-+|.. ....+.+.+.... .+.|+|+++|..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 34455666889999999999999999999655544 3344444443433 378999999987655
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=98.86 E-value=4.2e-09 Score=124.96 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=66.9
Q ss_pred CCCChhHHH------HHHHHHHHccC------CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccCchhHhh
Q psy1502 473 TNFSVGQRQ------LICLARAIVRN------NVILVLDEATANVDPKTDLLIQRTIRKKFA-D-CTVLTIAHRLHTIMD 538 (597)
Q Consensus 473 ~~LSGGQrQ------RIaIARAll~~------p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrlsti~~ 538 (597)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 267999999999999999999988887753 3 489999999999999
Q ss_pred cCEEEEEeCC
Q psy1502 539 SDKVLVMDSG 548 (597)
Q Consensus 539 ~D~Iivl~~G 548 (597)
||++++|...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999753
No 454
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.85 E-value=1.2e-08 Score=100.29 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=84.2
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-cc
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GT 429 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gT 429 (597)
.+.|-+|++|++++|++++|.||+|+||||+++.+.... ..-|.-- +-. ...++++. .+|. -.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~v----pa~-------~~~i~~~~---~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDV----PAK-------SMRLSLVD---RIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCcc----Ccc-------ccEecccc---EEEEecC
Confidence 346889999999999999999999999999999988642 1223210 000 01111111 1111 12
Q ss_pred HHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 430 I~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
-.||+..+...=..|+.+ ++-.=....+|++++|||+++++|+..
T Consensus 82 ~~d~~~~~~StF~~e~~~-----------------------------------~~~il~~~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 82 ARDDIMKGESTFMVELSE-----------------------------------TANILRHATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred cccccccCcchHHHHHHH-----------------------------------HHHHHHhCCCCeEEEEecccCCCCchH
Confidence 233333221110112222 111111124789999999999999998
Q ss_pred HHHHHHH-HHHhcC--CcEEEEeccCchhHhhc
Q psy1502 510 DLLIQRT-IRKKFA--DCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 510 e~~I~~~-l~~~~~--~~TvI~IaHrlsti~~~ 539 (597)
...+..+ ++.+.+ ++++|++||........
T Consensus 127 g~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 127 GYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 7777766 555544 78999999998887653
No 455
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.84 E-value=9.6e-09 Score=102.18 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=53.4
Q ss_pred CCChhHHHHHHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH
Q psy1502 474 NFSVGQRQLICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI 536 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti 536 (597)
.+|.|++|.++|+-+++..+ .++++|||-++|+|.....+.+.|.+..+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45999999999999998877 89999999999999999999999988776 78999999998754
No 456
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.82 E-value=8.5e-09 Score=100.68 Aligned_cols=65 Identities=25% Similarity=0.262 Sum_probs=56.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc-------------CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE-------------VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~-------------~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
++|+.++|+||||||||||+++|++.++ ..|+ ++|.|+..++.+.+++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999998753 3577 699999989988888754 588889999999
Q ss_pred hhc
Q psy1502 432 KNL 434 (597)
Q Consensus 432 eNI 434 (597)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 884
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.81 E-value=6.2e-08 Score=96.73 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=86.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP 441 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~ 441 (597)
-+|+|+.+.|.|++|||||||+..++- .....+. +.|+..+- +
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~-------------------~~y~~~e~-----------------~ 64 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKK-------------------VYVITTEN-----------------T 64 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCE-------------------EEEEEcCC-----------------C
Confidence 589999999999999999999988752 2222222 33443321 1
Q ss_pred hHHHHHHHHHhcH--HHHHHhcCCCchhhh---CCCCCCChhHHHHHHHHHHHcc--CCCEEEeecCCCCCC---HHHHH
Q psy1502 442 DYVLWTALQEVEL--KDMIMEGAGLNMTVY---EGGTNFSVGQRQLICLARAIVR--NNVILVLDEATANVD---PKTDL 511 (597)
Q Consensus 442 ~e~i~~a~~~a~l--~~fI~~l~GldT~vg---e~G~~LSGGQrQRIaIARAll~--~p~ILILDEaTSaLD---~~te~ 511 (597)
.+++.+-++..+. .+++. .|+-..+. +.....|.++++.+...+..+. +|+++++||+|+.+| .+.-.
T Consensus 65 ~~~~~~~~~~~g~~~~~~~~--~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~ 142 (234)
T PRK06067 65 SKSYLKQMESVKIDISDFFL--WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDIL 142 (234)
T ss_pred HHHHHHHHHHCCCChhHHHh--CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHH
Confidence 1122222222221 11111 12111110 1223457789999999999998 999999999996544 43333
Q ss_pred HHHHHHHHh-cCCcEEEEeccCchh-------Hh-hcCEEEEEeC
Q psy1502 512 LIQRTIRKK-FADCTVLTIAHRLHT-------IM-DSDKVLVMDS 547 (597)
Q Consensus 512 ~I~~~l~~~-~~~~TvI~IaHrlst-------i~-~~D~Iivl~~ 547 (597)
.+.+.+..+ ..++|+++++|.... +. -+|-++.|+.
T Consensus 143 ~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 143 NFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 443445432 247899999997653 22 2566666653
No 458
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.80 E-value=9.4e-09 Score=123.11 Aligned_cols=76 Identities=21% Similarity=0.114 Sum_probs=63.9
Q ss_pred CCCCChhHHHHHHHHHHHcc--------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCE
Q psy1502 472 GTNFSVGQRQLICLARAIVR--------NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDK 541 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~--------~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~ 541 (597)
-..|||||+|+++|||||.. +|++|+|||||++||+.+-..+++.|.++. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999995 899999999999999999999999998875 57899999995555444 345
Q ss_pred EEEEeC
Q psy1502 542 VLVMDS 547 (597)
Q Consensus 542 Iivl~~ 547 (597)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 555443
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=3.1e-08 Score=106.16 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=69.8
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEc---ceeCCCCChHHH-
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKID---DIDTEDVPLSKL- 412 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~id---g~di~~~~~~~l- 412 (597)
.+.++.++++..|..+..+++.++ +|.+||+++|+|+||||||||++.|.++. ++.|.|.+. |.++.++..+.+
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 346899999999977777999996 99999999999999999999999999987 467988874 566665544332
Q ss_pred ---hcCcEEEeCCC
Q psy1502 413 ---RSNISIIPQDP 423 (597)
Q Consensus 413 ---r~~I~~V~Q~~ 423 (597)
++.|++|+|..
T Consensus 216 ~~r~rtI~vV~qsd 229 (450)
T PRK06002 216 DNLKKAVAVVATSD 229 (450)
T ss_pred HhhCCeEEEEEcCC
Confidence 35799999964
No 460
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.60 E-value=4.7e-07 Score=106.34 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=53.3
Q ss_pred HHHHHccCCCEEEeecCCCCC-CHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh---cCEEEEEeCCeEE
Q psy1502 485 LARAIVRNNVILVLDEATANV-DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD---SDKVLVMDSGVAV 551 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaL-D~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~---~D~Iivl~~G~Iv 551 (597)
|+|++..+|.++++|||++.| |+.....+.+.++...+ +.+++++||+++.+.. ++.|+..-+.+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 789999999999999999999 78899999888877653 7899999999998864 3334333444444
No 461
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.49 E-value=3.7e-07 Score=96.41 Aligned_cols=122 Identities=21% Similarity=0.214 Sum_probs=79.6
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP 441 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~ 441 (597)
..++..+.|+|||||||||+++.+.+..+ .+|.|..-..++.-. .....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 35789999999999999999999998654 357765533322100 00001111110
Q ss_pred hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc
Q psy1502 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~ 521 (597)
.+|..+.. --=++++||-.+|+++++||+. |+++.....++ ..
T Consensus 176 -------------------------evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a~ 218 (343)
T TIGR01420 176 -------------------------EVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA---AE 218 (343)
T ss_pred -------------------------ccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---HH
Confidence 11211111 1235788999999999999997 99887765544 33
Q ss_pred CCcEEEEeccCchhHhhcCEEEEE
Q psy1502 522 ADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 522 ~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
.|.+++...|..+.....||++-|
T Consensus 219 tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 219 TGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred cCCcEEEEEcCCCHHHHHHHHHHh
Confidence 588999999998888777777543
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=1.8e-07 Score=99.43 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q psy1502 473 TNFSVGQRQLICLARAIVR---------NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~---------~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~ 537 (597)
..+|.||+++++||.+|.. +||||+||||+|.||+.....+.+.|.+. +.++++++|.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999764 579999999987654
No 463
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.48 E-value=8.7e-07 Score=82.89 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
.-|-|+-=-=-+.|.+ ++.-|+|||||-|+|-+.-.-.+...|.++.+ |.-+|+.||.+=.+.. --.|+.++.|-+.
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 4488876655556654 56789999999999999999999999988764 6789999998765543 3788889888765
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
+
T Consensus 208 ~ 208 (233)
T COG3910 208 E 208 (233)
T ss_pred c
Confidence 4
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.47 E-value=1.6e-07 Score=101.96 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=48.0
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~ 435 (597)
+++.++.+++|+.+++|||+|+||||++..|++.+ ...|. .+|++|++|+ |.-+..||+.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHH
Confidence 33455556789999999999999999999999876 34553 2678999998 6667788886
Q ss_pred c
Q psy1502 436 P 436 (597)
Q Consensus 436 ~ 436 (597)
.
T Consensus 307 ~ 307 (484)
T PRK06995 307 I 307 (484)
T ss_pred H
Confidence 4
No 465
>PRK01889 GTPase RsgA; Reviewed
Probab=98.47 E-value=1.6e-07 Score=99.54 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=64.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
-++.+.-.+++|++++|+|+||+|||||++.|+|.. +..|+|.+++..... ...++++.+++|+.++|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 355566668899999999999999999999999976 578999998754332 2346789999999999998888888
Q ss_pred ccC
Q psy1502 435 DPF 437 (597)
Q Consensus 435 ~~~ 437 (597)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 764
No 466
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=1.2e-07 Score=101.56 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=63.0
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC---ceEEEcceeCCCCChHHH------hcCcEEEeCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE---GVIKIDDIDTEDVPLSKL------RSNISIIPQD 422 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~---G~I~idg~di~~~~~~~l------r~~I~~V~Q~ 422 (597)
+..+++++ |++.+||+++|+|+||+|||||+++|+|+++ +. |.|-.+|.+++++..+.| |..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 34589999 9999999999999999999999999999874 32 555556666666554444 4578999999
Q ss_pred CCCCC-ccHHhhc
Q psy1502 423 PVLFS-GTLRKNL 434 (597)
Q Consensus 423 ~~LF~-gTI~eNI 434 (597)
...+. -+..+|.
T Consensus 221 ~s~~~rl~a~e~a 233 (434)
T PRK07196 221 ESPLMRIKATELC 233 (434)
T ss_pred CChhhhHHHHHHH
Confidence 87774 4666665
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.44 E-value=3.9e-08 Score=108.48 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHh--cccc-CCceEEEcceeCCCCChHHHhc---CcEEEeCCCCCCCccHHhhccc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIF--RLAE-VEGVIKIDDIDTEDVPLSKLRS---NISIIPQDPVLFSGTLRKNLDP 436 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~--~l~~-~~G~I~idg~di~~~~~~~lr~---~I~~V~Q~~~LF~gTI~eNI~~ 436 (597)
-+++|..+.|.|++|||||||..-++ |.-. -+..++|... -+++++++ .+|+-.|+..- .+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 48999999999999999999998764 4443 4566666542 34444443 44544443210 011211
Q ss_pred CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH--HHHccCCCEEEeecCCCCCCHHHHHHHH
Q psy1502 437 FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA--RAIVRNNVILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 437 ~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA--RAll~~p~ILILDEaTSaLD~~te~~I~ 514 (597)
-...+.......++..++.++ +..-...+|+|++||+.|+ .++..+|+.. ....+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~----------l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~ 147 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSAL----------IERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIF 147 (484)
T ss_pred EecCchhccccccccCCHHHH----------HHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHH
Confidence 000011111112222233333 2333357899999999999 6776665533 34555566
Q ss_pred HHHHHhc-CCcEEEEeccCchh--------H-h-hcCEEEEEe
Q psy1502 515 RTIRKKF-ADCTVLTIAHRLHT--------I-M-DSDKVLVMD 546 (597)
Q Consensus 515 ~~l~~~~-~~~TvI~IaHrlst--------i-~-~~D~Iivl~ 546 (597)
+.++.+. .++|+|+++|..+. + . -||.|+.|+
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 6665543 37999999998753 2 3 379999887
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.44 E-value=2.2e-07 Score=89.43 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=55.3
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC--CC-CccHH
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LF-SGTLR 431 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~--LF-~gTI~ 431 (597)
..+=+.+.+++|+.++|+||+|||||||++.|+++.+ ..|.|.+.+.+-...+ .+..++++.|... .+ ..|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 4445667799999999999999999999999999875 5799999775433332 2455677766553 22 24677
Q ss_pred hhc
Q psy1502 432 KNL 434 (597)
Q Consensus 432 eNI 434 (597)
+++
T Consensus 91 ~~l 93 (186)
T cd01130 91 DLL 93 (186)
T ss_pred HHH
Confidence 766
No 469
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.43 E-value=0.0021 Score=68.78 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 66 IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145 (597)
Q Consensus 66 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i 145 (597)
+..+++++++...+..+..++......+-..-|.+.+.++.++.. ..+ .-=+||+.|+.............++
T Consensus 141 l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li 213 (409)
T PRK11098 141 VGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFI 213 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHH
Confidence 444555544444444444444444444444444444455444332 111 2467999999988887778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q psy1502 146 QGVMQVSGALIVSLSVNPLF-------------SIPVLILLYLF----WRLSKAYLRTSKSLKYLEGVTRSPVFTHLNAC 208 (597)
Q Consensus 146 ~~~~~~i~~~i~l~~~~~~l-------------~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 208 (597)
.++++++..+.+++.+|..+ ..++++..++. .++.+...+...+.++.|..-+..+ -...|.
T Consensus 214 ~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~L-Vrvren 292 (409)
T PRK11098 214 NAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKEL-VYGEDD 292 (409)
T ss_pred HHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHH-hHhhhh
Confidence 99999888888888887653 11222212222 2222222222222222222221111 111222
Q ss_pred HccHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHH
Q psy1502 209 LHGLPTIRAHGAA-KILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-SFFFFADIGGKVGLAVTQTM 286 (597)
Q Consensus 209 l~gi~~Ika~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~ 286 (597)
-+ +.| ....++|++..++..+........ ..+......+..++..+++. .+....+..|.+......+.
T Consensus 293 aE--------~~E~~~L~~~F~~V~~N~~rl~~~~~~l-~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~ 363 (409)
T PRK11098 293 AD--------RATPPTVRELFSNVRKNYFRLYFHYMYF-NIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFG 363 (409)
T ss_pred hh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 11 112 234444444433332222111111 11111111111111111110 00001234455555556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1502 287 TLMGVVQWAMRQAAEVENHMISVKRLVEYTKL 318 (597)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 318 (597)
++.+.++.++..+.++..-.+..+|+.++.+.
T Consensus 364 ~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 364 QVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999988653
No 470
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.38 E-value=3.5e-07 Score=96.62 Aligned_cols=87 Identities=23% Similarity=0.227 Sum_probs=63.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc---cCCc-eEEEcceeCCCCChHHHhcCcEEEeCCC-----CCCCccHHhhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEG-VIKIDDIDTEDVPLSKLRSNISIIPQDP-----VLFSGTLRKNLD 435 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~~-----~LF~gTI~eNI~ 435 (597)
++|..++|+|||||||||+++.|++++ ++.| .|.....++ ++..+.+++..++|+|.. .-|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 589999999999999999999999976 2344 565544444 587777777778888864 357889999987
Q ss_pred cCC------CCChHH-HHHHHHHh
Q psy1502 436 PFE------KYPDYV-LWTALQEV 452 (597)
Q Consensus 436 ~~~------~~~~e~-i~~a~~~a 452 (597)
..+ ++.|.+ +..|++.+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHH
Confidence 433 344555 44566664
No 471
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.35 E-value=0.0011 Score=68.08 Aligned_cols=178 Identities=10% Similarity=0.058 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc-ccC---hhHHHHHHHHHHHHHHHHHHH
Q psy1502 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFS-TNP---SGRILNRFSKDMGAVDEVLPK 139 (597)
Q Consensus 64 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~-~~~---sG~l~~rit~D~~~i~~~~~~ 139 (597)
..+..++++++...+++....++....+.+....|...+.++.++-. .||. +.. ....=+||+.|++...+....
T Consensus 67 ~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~ 145 (281)
T PF06472_consen 67 RLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLS 145 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHH
Confidence 34555666666666666666677777777777777778888877766 5665 222 335667999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHh
Q psy1502 140 AMLDAAQGVMQVSGALIVSLSVNPLFSI-PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAH 218 (597)
Q Consensus 140 ~~~~~i~~~~~~i~~~i~l~~~~~~l~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~ 218 (597)
....++..++.++.....++..+..+.+ ++++..++..++.+...+...++...++..+++.........++-+.|-.+
T Consensus 146 l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~ 225 (281)
T PF06472_consen 146 LFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFY 225 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhc
Confidence 8888888888888888888777777766 333333444455555555555554444455566666777778888999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 219 GAAKILVEEFDYHQDLHSSTWHLF 242 (597)
Q Consensus 219 ~~e~~~~~~~~~~~~~~~~~~~~~ 242 (597)
+.|+.+.++.++..+.....+...
T Consensus 226 ~Ge~~E~~~l~~~f~~l~~~~~~~ 249 (281)
T PF06472_consen 226 RGESRERRRLDRRFDALIDNWRRL 249 (281)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888776655544433
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.35 E-value=3.1e-07 Score=89.22 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh-----cccC--CCCC
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN-----LDPF--EKYP 441 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN-----I~~~--~~~~ 441 (597)
.+||+|+||||||||++.|.++. ..|.+.+ +++|.+...-+.+++ ..+. ...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~~~~~~v-------------------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-GNPKVVI-------------------ISQDSYYKDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCCeEE-------------------EEecccccccccccHHHhccCCCCCCCccc
Confidence 48999999999999999999976 3344433 333332221111111 1111 1122
Q ss_pred hHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 442 DYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
.+.+.+ .+..+ .|- .+.-...+.|.|++++-.+ .+.+|+++|+|.+.+..++
T Consensus 61 ~~~~~~---------~l~~l~~~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 FDLLIS---------HLQDLKNGK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHH---------HHHHHHCCC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 222222 22222 221 1222344777787776554 5788999999999999986
No 473
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.34 E-value=3.8e-06 Score=88.80 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=115.4
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-cccc---CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAE---VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~~---~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+|.-|++. .+.+ +-||+| .+.|||..=-|||||++.|. |.|+ -.|+=++ --.+.
T Consensus 227 ve~~LP~~g-~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~V-----------------VT~~~ 285 (448)
T PF09818_consen 227 VEIELPNGG-TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFV-----------------VTDPD 285 (448)
T ss_pred EEEECCCCC-EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEE-----------------EECCC
Confidence 777776532 4555 478999 99999999999999999998 6884 2343222 11110
Q ss_pred CCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 422 DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
-.. | .+.|- +....+++..||.+| .|.||. .=--.+=||---|=-.|..||=..+++|++||
T Consensus 286 avk-----i--------rAEDG---R~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDE 348 (448)
T PF09818_consen 286 AVK-----I--------RAEDG---RSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDE 348 (448)
T ss_pred ceE-----E--------EecCC---ceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 0 11111 122345667999998 999987 22235779999999999999999999999999
Q ss_pred CCCCC-----CHHHHHHH-------------HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 501 ATANV-----DPKTDLLI-------------QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaL-----D~~te~~I-------------~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
=|||- |...+..| ...|.+...-.|++++.--=..+.-||+|++||+=+..+
T Consensus 349 DtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~d 418 (448)
T PF09818_consen 349 DTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPKD 418 (448)
T ss_pred cccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccchh
Confidence 99997 66667666 233333333345555555555567799999999966543
No 474
>PRK12369 putative transporter; Reviewed
Probab=98.31 E-value=0.0058 Score=63.92 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLD 143 (597)
Q Consensus 64 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~ 143 (597)
..+..+++++++..++..+..++......+-..-+.+.+.++.+..+- .. +++ =.||+.|+.............
T Consensus 64 ~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~i-DNP----DQRI~EDi~~f~~~tl~l~~~ 137 (326)
T PRK12369 64 ASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-NI-EGS----SQRIQEDTYRFAKIMESLGLS 137 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC-CCc----cHhHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555566666555321 11 222 279999999888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccchHHHHHH
Q psy1502 144 AAQGVMQVSGALIVSLSVNPLFSIP------------VLILLYLFWRLSKAYLRTSKSL----KYLEGVTRSPVFTHLNA 207 (597)
Q Consensus 144 ~i~~~~~~i~~~i~l~~~~~~l~l~------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e 207 (597)
++.++++++..+.+++.++..+.++ +++..++...+..+..+...++ ++.|..-+..+ -...|
T Consensus 138 ~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~L-vrvre 216 (326)
T PRK12369 138 FLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKEL-VYAED 216 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHH-Hhhcc
Confidence 9999999888888888877544221 1111112222222222221111 22222111100 00111
Q ss_pred HHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HhhhhHHHHHHH
Q psy1502 208 CLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFF---FF-ADIGGKVGLAVT 283 (597)
Q Consensus 208 ~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~g~i~~~~~ 283 (597)
.-+. +.-.+...++|.+..+...+.... ..++..+......+...+..+... +. .+..|.+.....
T Consensus 217 ~ae~------~~E~~~l~~~f~~v~~n~~~~~~~----~~~l~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~ 286 (326)
T PRK12369 217 DKKN------YAKPETLIELFTGLRFNYFRLFLH----YGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISN 286 (326)
T ss_pred chhh------hhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 1111 111133444454443332222111 111222211111111111111111 11 234455555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1502 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTK 317 (597)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 317 (597)
.+..+.+.+..+...+.++..-.+..+|+.++.+
T Consensus 287 AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 287 AFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888899999999999999999988754
No 475
>PRK15494 era GTPase Era; Provisional
Probab=98.31 E-value=3.6e-07 Score=96.23 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=50.3
Q ss_pred CcccEEEEeeEEEeCCCCccceeeeEEEcCCc-------EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKE-------KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~-------~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..|++++++++|+||..++++++++|++++|+ +++|||++|+|||||++.|.+-
T Consensus 15 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 46789999999999977889999999999999 9999999999999999999873
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.28 E-value=8e-07 Score=85.49 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
|+.++|+||||||||||+++|.+..++ .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999987643 5788888877666666677888888883
No 477
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.28 E-value=1.1e-06 Score=107.74 Aligned_cols=61 Identities=26% Similarity=0.234 Sum_probs=54.9
Q ss_pred CCCCChhHHHHHH----HHHH--------HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 472 GTNFSVGQRQLIC----LARA--------IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 472 G~~LSGGQrQRIa----IARA--------ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
...||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++||++|++-
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 4689999999996 6766 55799999999999999999999999999988 789999999974
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.28 E-value=1.4e-06 Score=83.12 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEE-----------cceeCCCCChHHHh-----cCcEEEeCCCCCCCc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI-----------DDIDTEDVPLSKLR-----SNISIIPQDPVLFSG 428 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~i-----------dg~di~~~~~~~lr-----~~I~~V~Q~~~LF~g 428 (597)
|+.++|+||||||||||++.|++.++..|.+.+ +|.+....+.+.+. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 678999999999999999999987654465544 67777767666653 358888887655443
No 479
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.26 E-value=2.5e-06 Score=85.43 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=36.5
Q ss_pred HHccCCCEEEeecCCCC------CCHHHHHHHHHHHHHhcC--CcEEEEeccCch
Q psy1502 488 AIVRNNVILVLDEATAN------VDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH 534 (597)
Q Consensus 488 All~~p~ILILDEaTSa------LD~~te~~I~~~l~~~~~--~~TvI~IaHrls 534 (597)
+..++|+++|+| |+++ +|+..-..+.+.|.++.+ ++|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 445799999999 6654 688888888888877653 789999999764
No 480
>PRK08149 ATP synthase SpaL; Validated
Probab=98.26 E-value=9.2e-07 Score=94.76 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=57.7
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC---ceEEEcceeCCCCChHHHh----cCcEEEeCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE---GVIKIDDIDTEDVPLSKLR----SNISIIPQD 422 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~---G~I~idg~di~~~~~~~lr----~~I~~V~Q~ 422 (597)
+..+++++ +++.+||+++|+|+||+|||||++.|+++.. +. |.|-.+|.+++++..+.++ +++++|...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 34689999 9999999999999999999999999999874 33 8899999999887766554 566777654
No 481
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=6.9e-06 Score=74.12 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=41.5
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc------CCcEEEEeccCch
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF------ADCTVLTIAHRLH 534 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~------~~~TvI~IaHrls 534 (597)
++.....++...++.++++||+-.. +++....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998775 5566667777777763 5678889988654
No 482
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.22 E-value=1.1e-05 Score=87.38 Aligned_cols=178 Identities=24% Similarity=0.237 Sum_probs=106.2
Q ss_pred eCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc
Q psy1502 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428 (597)
Q Consensus 350 Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g 428 (597)
|..+..+++++ |++.+|++++|+|+||+|||||++.|+++.+ +.|.+...|..-+++. .+... +..+
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~ 214 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGE 214 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcc
Confidence 34455689999 9999999999999999999999999999874 5576666555544432 11110 1111
Q ss_pred cHHhhcc-c---CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhh-CCCCCCChhHHHH-HHHHHHHccCCCEEEeecCC
Q psy1502 429 TLRKNLD-P---FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQL-ICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 429 TI~eNI~-~---~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vg-e~G~~LSGGQrQR-IaIARAll~~p~ILILDEaT 502 (597)
.-.++-. . .++..-++...+.-..-..|+... +|.|-.+= +.=.++- |-|| |++| +..|| .+
T Consensus 215 ~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd-~G~~Vll~~DslTr~A--~A~REisl~---~ge~P------~~ 282 (440)
T TIGR01026 215 EGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD-QGKDVLLLMDSVTRFA--MAQREIGLA---AGEPP------AT 282 (440)
T ss_pred cccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEeChHHHH--HHHHHHHHh---cCCCC------cc
Confidence 1112211 1 112223333332222233455544 47665432 2211211 1111 1111 22333 46
Q ss_pred CCCCHHHHHHHHHHHHHhcC-Cc-------EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKFA-DC-------TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~-~~-------TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+.|+..-..+-+-+++... ++ |+++-+|++ +-.-||.+.-+.||+|+-
T Consensus 283 ~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivL 339 (440)
T TIGR01026 283 KGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVL 339 (440)
T ss_pred cccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEE
Confidence 78999998888888877543 46 888899998 344689999999999986
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=2.9e-06 Score=103.31 Aligned_cols=43 Identities=28% Similarity=0.531 Sum_probs=36.1
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-ccc-CCceEEEcce
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAE-VEGVIKIDDI 402 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~-~~G~I~idg~ 402 (597)
+++..++++++||+|++|+|||||++.+.+ +.+ .+|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 467778899999999999999999999965 433 5899999763
No 484
>PLN02796 D-glycerate 3-kinase
Probab=98.20 E-value=4.1e-07 Score=94.39 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCCCccceeeeEEE---cCCcE-----EEEEcCCCCCHHHHHHHHhccccC----CceEEEcceeCCCCChHHHhc
Q psy1502 351 LSGPRVIKNLNITI---HPKEK-----IGIVGRTGAGKSSLIAAIFRLAEV----EGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 351 ~~~~~vL~~isl~I---~~G~~-----vaIVG~SGsGKSTL~~LL~~l~~~----~G~I~idg~di~~~~~~~lr~ 414 (597)
|....+++++++.+ ++|+. +||+|+||||||||++.|.++... .|.|.+||..+.......+++
T Consensus 76 P~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 76 PVYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred CcHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 44456899999988 67887 999999999999999999997642 488999999987777666665
No 485
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.19 E-value=3.8e-07 Score=103.94 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.9
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.+++| +.|+||+|+||||+++.+++-
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHH
Confidence 56666 999999999999999999874
No 486
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.19 E-value=3.7e-06 Score=99.97 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=66.0
Q ss_pred CCCCChhHHHHH------HHHHHHccC--CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEE
Q psy1502 472 GTNFSVGQRQLI------CLARAIVRN--NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKV 542 (597)
Q Consensus 472 G~~LSGGQrQRI------aIARAll~~--p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~I 542 (597)
-..|||||+=.+ |||..+-.+ -+.|+|||||..||+++-..+.++|.++.. +++||||||.-.....+|.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 358999998754 555566667 699999999999999999999999988766 59999999999999999999
Q ss_pred EEEeCC
Q psy1502 543 LVMDSG 548 (597)
Q Consensus 543 ivl~~G 548 (597)
+.++..
T Consensus 893 i~V~k~ 898 (908)
T COG0419 893 IRVKKD 898 (908)
T ss_pred EEEEec
Confidence 988653
No 487
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.18 E-value=4.1e-05 Score=89.93 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=47.1
Q ss_pred HHccCCCEEEeecCCCCCC-HHHHHHHHHHHHHhcC-CcEEEEeccCchhH----------hhcCEEEEEeC
Q psy1502 488 AIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI----------MDSDKVLVMDS 547 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD-~~te~~I~~~l~~~~~-~~TvI~IaHrlsti----------~~~D~Iivl~~ 547 (597)
.+-.+|.++++|||...|| +...+.+.+.++...+ +..++++||.++.+ .+|+--+.|-+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 4567899999999999999 7888888888877654 67899999998764 45665455544
No 488
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.15 E-value=7.9e-06 Score=89.67 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=54.8
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED 406 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~ 406 (597)
++|++..|+ +..+++++++.+..|+.++++|++|||||||++.|.|+.| .+|++.+++..|.+
T Consensus 187 ~~d~~~v~G-q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIG-QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEEC-cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 457877774 4569999999999999999999999999999999999875 78999998877643
No 489
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.12 E-value=3.7e-05 Score=76.38 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=30.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHh--ccccCCceEEEcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIF--RLAEVEGVIKIDD 401 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~--~l~~~~G~I~idg 401 (597)
-+++|+.+.|.|++|||||||+..++ ++.+.++.+.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58999999999999999999998665 3333445666654
No 490
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.12 E-value=7.6e-06 Score=78.83 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--H-hhcCEEEEEeCCe
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--I-MDSDKVLVMDSGV 549 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i-~~~D~Iivl~~G~ 549 (597)
|+-+|-+||.++..||+.+..+| +-+||...+.+.+.+.+... +.++++-+|.+.. + ..||.+++++.+.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 77899999999999999988887 67999999999988887653 3699999999843 3 5699999998874
No 491
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.12 E-value=1.7e-06 Score=82.43 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhc-CcEEEeCCC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRS-NISIIPQDP 423 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~-~I~~V~Q~~ 423 (597)
+|+.++|+|+||||||||++.|.++... +.+||.++... ..+|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 6999999999999999999999997643 68899887432 23333 345555553
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.10 E-value=1.3e-06 Score=85.61 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=35.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
|+|+.+||+|+||||||||++.|.++.+. ..+++++||.++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------------------~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------------------LEIVIISQDNYYKD 46 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------------------cCCeEecccccccC
Confidence 68999999999999999999999997641 25677777777664
No 493
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.10 E-value=7e-06 Score=79.86 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
+++|+|++|||||||++.+.+..++.+.+.+-+.|........|....++++|+..+. +..|-.......++...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~-- 77 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILG---VETGGCPHTAIREDASM-- 77 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcCCCccceeccCHHH--
Confidence 6899999999999999999987654444656566776666666777789999987642 11121211111112111
Q ss_pred HHHhcHHHHHHhcCCCc-hhhhCCCCCCChhH
Q psy1502 449 LQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQ 479 (597)
Q Consensus 449 ~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQ 479 (597)
....+.+.+..++++| +.|+..|..+|.--
T Consensus 78 -~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 78 -NLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred -HHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 1223345555554455 45666676666554
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.09 E-value=2.3e-06 Score=83.21 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=42.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
++|+.++|+|+||||||||+++|.+.. + ..|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 678999999999999999999999854 4 34789999988762 2233466666663
No 495
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.08 E-value=5.9e-05 Score=88.69 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHccCCCEEEeecCCCCCC-HHHHHHHHHHHHHhc-CCcEEEEeccCchhH----------hhcCEEEEEeCCe
Q psy1502 487 RAIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI----------MDSDKVLVMDSGV 549 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD-~~te~~I~~~l~~~~-~~~TvI~IaHrlsti----------~~~D~Iivl~~G~ 549 (597)
+.+-.+|.++++|||++.|| +.....+.+.++... .+.+++++||.++.+ .+|+--+.|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 44456899999999999999 677888888887764 478999999998744 3566666665543
No 496
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.08 E-value=8.9e-06 Score=81.04 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=49.8
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc------CCceEEEcceeCCCCChHHHhc---CcEEEeCCCCCCCccHH
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE------VEGVIKIDDIDTEDVPLSKLRS---NISIIPQDPVLFSGTLR 431 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~------~~G~I~idg~di~~~~~~~lr~---~I~~V~Q~~~LF~gTI~ 431 (597)
=+++|+.+.|+|++|||||||+.-++. ..+ .++.++||+.+ ..+.+.+.+ +.+. ...++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~~~~~~-------~~~~~~ 85 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIAERFGL-------DPEEVL 85 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHHHHhcc-------ChHhHh
Confidence 389999999999999999999998863 223 26888998865 234444433 2333 224577
Q ss_pred hhcccCCCCChHHHH
Q psy1502 432 KNLDPFEKYPDYVLW 446 (597)
Q Consensus 432 eNI~~~~~~~~e~i~ 446 (597)
+|+.+....+.+++.
T Consensus 86 ~~i~~~~~~~~~~l~ 100 (235)
T cd01123 86 DNIYVARAYNSDHQL 100 (235)
T ss_pred cCEEEEecCCHHHHH
Confidence 787665444444443
No 497
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.00 E-value=1.3e-05 Score=78.61 Aligned_cols=44 Identities=30% Similarity=0.514 Sum_probs=36.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g 428 (597)
+++..|||+|+||||||||++.|.+.++ ...+++++||.+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--------------------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--------------------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--------------------CCceEEEeCCccccCc
Confidence 4688999999999999999999998651 2468888998887754
No 498
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.99 E-value=3.9e-06 Score=80.01 Aligned_cols=75 Identities=25% Similarity=0.228 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccC-------------CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEV-------------EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~-------------~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
|+.++|+||||||||||++.|++.++. .|+ ++|.+..-++.+.+.+.+ +++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 789999999999999999999996531 222 355555545555555543 46666666666666
Q ss_pred cccCCCCChHHHHHHH
Q psy1502 434 LDPFEKYPDYVLWTAL 449 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~ 449 (597)
. ++ .+.+.+.+++
T Consensus 76 ~-y~--~~~~~i~~~~ 88 (180)
T TIGR03263 76 Y-YG--TPKSPVEEAL 88 (180)
T ss_pred e-eC--CcHHHHHHHH
Confidence 3 32 3344444443
No 499
>PRK09183 transposase/IS protein; Provisional
Probab=97.99 E-value=2.6e-05 Score=79.01 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=38.2
Q ss_pred EEEeeEEEeCCCC-----ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 342 EFQNTNVRYLSGP-----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 342 ~f~nVsf~Y~~~~-----~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+++..|++.... ..|.+++| +++|+.+.|+||+|+|||+|+..|....
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3566666663221 24788899 9999999999999999999999996543
No 500
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.98 E-value=3.6e-06 Score=81.15 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.4
Q ss_pred hhhCCCCCCChhHHHHHH--HHHHHcc-CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCC
Q psy1502 467 TVYEGGTNFSVGQRQLIC--LARAIVR-NNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523 (597)
Q Consensus 467 ~vge~G~~LSGGQrQRIa--IARAll~-~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~ 523 (597)
.++.+.-.+|+||+|++. +++.+-. +++++ ||||+|.+.-..+.+.|.++.++
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566678999999987 6677644 34443 99999999999999999887654
Done!